AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051588


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051588.t1 MTR_1g016010 97.566 452 7 1 1 448 1 452 0.0 922
MS.gene051588.t1 MTR_2g099990 48.780 492 171 17 11 448 1 465 5.43e-133 391
MS.gene051588.t1 MTR_8g017210 47.129 505 187 14 1 433 1 497 7.42e-130 385
MS.gene051588.t1 MTR_2g099990 49.173 423 149 16 65 448 1 396 5.76e-113 338
MS.gene051588.t1 MTR_4g059870 73.711 194 50 1 16 208 12 205 4.01e-105 321
MS.gene051588.t1 MTR_1g094115 76.216 185 41 3 38 222 45 226 7.55e-102 314
MS.gene051588.t1 MTR_2g093960 44.784 393 162 10 40 420 31 380 2.09e-101 309
MS.gene051588.t1 MTR_1g112270 81.013 158 29 1 44 201 47 203 1.35e-97 304
MS.gene051588.t1 MTR_1g112270 75.740 169 29 2 44 201 47 214 7.21e-94 295
MS.gene051588.t1 MTR_2g090745 49.221 321 87 5 51 296 17 336 1.30e-92 286
MS.gene051588.t1 MTR_1g094115 69.189 185 37 4 38 222 45 209 1.61e-86 274
MS.gene051588.t1 MTR_2g017720 72.727 121 27 2 46 166 318 432 1.98e-52 182
MS.gene051588.t1 MTR_3g102000 48.193 166 68 5 68 229 36 187 2.94e-36 133
MS.gene051588.t1 MTR_5g030560 72.000 50 14 0 46 95 11 60 2.39e-21 88.2
MS.gene051588.t1 MTR_1g093095 34.161 161 91 6 47 194 91 249 1.89e-19 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051588.t1 AT1G55110 59.752 323 93 7 7 294 17 337 3.24e-120 358
MS.gene051588.t1 AT1G55110 59.752 323 93 7 7 294 17 337 3.24e-120 358
MS.gene051588.t1 AT1G55110 59.752 323 93 7 7 294 17 337 3.24e-120 358
MS.gene051588.t1 AT5G66730 75.000 196 41 3 10 203 4 193 5.51e-106 323
MS.gene051588.t1 AT3G50700 72.864 199 50 2 5 203 1 195 2.47e-105 320
MS.gene051588.t1 AT3G13810 69.444 216 46 2 8 203 17 232 1.83e-104 320
MS.gene051588.t1 AT3G13810 69.444 216 46 2 8 203 17 232 1.83e-104 320
MS.gene051588.t1 AT3G13810 69.444 216 46 2 8 203 12 227 1.99e-104 320
MS.gene051588.t1 AT3G45260 79.532 171 35 0 40 210 38 208 2.09e-103 315
MS.gene051588.t1 AT3G45260 79.532 171 35 0 40 210 38 208 2.09e-103 315
MS.gene051588.t1 AT4G02670 46.174 379 150 8 41 399 55 399 8.66e-103 312
MS.gene051588.t1 AT4G02670 46.174 379 150 8 41 399 53 397 9.67e-103 312
MS.gene051588.t1 AT1G03840 77.841 176 38 1 38 213 38 212 1.25e-102 315
MS.gene051588.t1 AT5G03150 76.966 178 38 1 40 214 52 229 1.67e-102 315
MS.gene051588.t1 AT3G13810 69.014 213 46 2 11 203 1 213 4.50e-102 313
MS.gene051588.t1 AT2G02080 78.916 166 34 1 38 203 51 215 1.03e-101 313
MS.gene051588.t1 AT2G02080 78.916 166 34 1 38 203 51 215 1.03e-101 313
MS.gene051588.t1 AT2G02080 78.916 166 34 1 38 203 51 215 1.03e-101 313
MS.gene051588.t1 AT2G02080 78.916 166 34 1 38 203 51 215 1.03e-101 313
MS.gene051588.t1 AT5G44160 75.000 188 46 1 24 211 20 206 2.18e-101 310
MS.gene051588.t1 AT1G14580 74.566 173 43 1 31 203 43 214 5.63e-101 310
MS.gene051588.t1 AT1G14580 74.566 173 43 1 31 203 43 214 5.63e-101 310
MS.gene051588.t1 AT1G14580 74.566 173 43 1 31 203 57 228 9.47e-101 309
MS.gene051588.t1 AT1G03840 76.705 176 38 2 38 213 38 210 7.71e-99 305
MS.gene051588.t1 AT2G02070 80.368 163 31 1 41 203 52 213 1.48e-98 307
MS.gene051588.t1 AT2G02070 80.368 163 31 1 41 203 52 213 1.48e-98 307
MS.gene051588.t1 AT5G60470 74.405 168 43 0 41 208 40 207 1.12e-96 298
MS.gene051588.t1 AT5G60470 74.405 168 43 0 41 208 44 211 1.16e-96 298
MS.gene051588.t1 AT3G13810 64.414 222 53 2 8 203 12 233 7.62e-95 295
MS.gene051588.t1 AT5G44160 79.141 163 33 1 49 211 6 167 3.26e-94 291
MS.gene051588.t1 AT3G13810 83.553 152 25 0 52 203 68 219 3.31e-94 293
MS.gene051588.t1 AT5G60470 73.885 157 41 0 52 208 46 202 5.26e-89 278
MS.gene051588.t1 AT2G02080 82.734 139 23 1 65 203 1 138 9.72e-88 275
MS.gene051588.t1 AT2G02080 82.734 139 23 1 65 203 1 138 9.72e-88 275
MS.gene051588.t1 AT1G68130 63.529 170 56 2 29 197 34 198 7.22e-75 241
MS.gene051588.t1 AT2G01940 62.722 169 61 2 28 195 32 199 2.59e-73 237
MS.gene051588.t1 AT1G25250 57.895 190 71 4 10 197 9 191 4.81e-72 232
MS.gene051588.t1 AT2G01940 61.765 170 62 3 28 195 32 200 1.07e-69 228
MS.gene051588.t1 AT1G25250 63.758 149 52 2 51 197 20 168 4.36e-68 221
MS.gene051588.t1 AT1G68130 64.286 112 39 1 87 197 1 112 1.42e-47 167
MS.gene051588.t1 AT1G25250 61.947 113 41 2 87 197 1 113 4.15e-45 159
MS.gene051588.t1 AT2G01940 62.727 110 40 1 87 195 1 110 1.24e-44 159
MS.gene051588.t1 AT1G34370 34.810 158 90 4 50 194 14 171 1.10e-22 98.2
MS.gene051588.t1 AT1G34370 34.810 158 90 4 50 194 224 381 3.97e-22 99.4
MS.gene051588.t1 AT1G34370 34.810 158 90 4 50 194 224 381 3.97e-22 99.4
MS.gene051588.t1 AT5G22890 31.395 172 103 4 36 194 185 354 4.29e-22 97.8
MS.gene051588.t1 AT1G13290 34.395 157 92 5 62 208 93 248 7.79e-20 90.1
MS.gene051588.t1 AT3G57670 32.749 171 96 6 62 215 209 377 3.67e-19 89.4
MS.gene051588.t1 AT3G20880 31.902 163 93 6 62 208 248 408 9.34e-19 88.6
MS.gene051588.t1 AT1G51220 33.803 142 83 5 62 194 170 309 1.19e-18 87.4
MS.gene051588.t1 AT1G08290 34.507 142 83 4 62 194 172 312 2.15e-17 83.6
MS.gene051588.t1 AT1G34790 32.571 175 105 5 28 194 107 276 2.27e-17 82.8

Find 88 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTAGTGCCACAAATTT+TGG 0.055414 1.3:+6203477 None:intergenic
TCTCATTGTTTGGCTTCTTA+TGG 0.135453 1.3:-6202594 MS.gene051588:CDS
GAGGAACAATATTCCCATTT+TGG 0.167286 1.3:-6202411 MS.gene051588:CDS
AACCATGGCTTTGATGAAAT+TGG 0.176098 1.3:+6202931 None:intergenic
AGTAACCATAATGGAATTTC+TGG 0.229667 1.3:+6202864 None:intergenic
CTCATTGTTTGGCTTCTTAT+GGG 0.236544 1.3:-6202593 MS.gene051588:CDS
TTTGAGTTGAAAGAATTATT+AGG 0.263924 1.3:+6202792 None:intergenic
AGGAAGATTTCTCTTCCTTT+TGG 0.267985 1.3:+6204411 None:intergenic
AGAGACTTGTTCAATATATC+TGG 0.300064 1.3:-6202306 MS.gene051588:CDS
GGAAACAAAGTTGTAGGGTT+AGG 0.304016 1.3:+6202813 None:intergenic
TGTTTGTTGCTAAGAGAGTT+TGG 0.304831 1.3:+6203791 None:intergenic
ATGCAAACTCACGTGCCTTC+AGG 0.323277 1.3:-6202660 MS.gene051588:CDS
TAAGACCAGAAATTCCATTA+TGG 0.323892 1.3:-6202869 MS.gene051588:CDS
GTTTGTTGCTAAGAGAGTTT+GGG 0.340724 1.3:+6203792 None:intergenic
TTCAATATATCTGGAATTGA+TGG 0.346876 1.3:-6202297 MS.gene051588:CDS
ACCATGGCTTTGATGAAATT+GGG 0.358760 1.3:+6202932 None:intergenic
TTATTAGGAAACAAAGTTGT+AGG 0.372201 1.3:+6202807 None:intergenic
ATGGCTTCACGTGAAGAAAT+AGG 0.374124 1.3:-6202630 MS.gene051588:CDS
AGGGCACTTGGTGACCTAAC+TGG 0.384172 1.3:-6203598 MS.gene051588:CDS
GAAACAAAGTTGTAGGGTTA+GGG 0.390096 1.3:+6202814 None:intergenic
AAAGCTAGCACTTGTGCCTC+AGG 0.393473 1.3:+6203820 None:intergenic
AGTGCTTCTTGATTCCAGTT+AGG 0.403331 1.3:+6203584 None:intergenic
GATAATGGTTCAAATGGGTT+GGG 0.421089 1.3:+6202841 None:intergenic
TGGGAGTGAGAAGAGAATAG+AGG 0.421836 1.3:+6202951 None:intergenic
TGATAATGGTTCAAATGGGT+TGG 0.442086 1.3:+6202840 None:intergenic
GGGAGTGAGAAGAGAATAGA+GGG 0.447356 1.3:+6202952 None:intergenic
GCACGTGAGTTTGCATTAAG+TGG 0.454018 1.3:+6202667 None:intergenic
TCTTGTCATCTCATCATCAT+TGG 0.457129 1.3:+6202359 None:intergenic
ATTTAATTACCTGGGTGGCC+AGG 0.460193 1.3:+6204391 None:intergenic
GCTTCTTCAGCAACCAAGAA+TGG 0.463212 1.3:-6204463 MS.gene051588:CDS
CTCTTGCATGATGTGATGTA+TGG 0.470739 1.3:-6202525 MS.gene051588:CDS
GTGTTCACCATGACCCTTCA+AGG 0.470912 1.3:-6203618 MS.gene051588:CDS
AAGAGATAATAATAACTTTG+AGG 0.471052 1.3:-6202430 MS.gene051588:CDS
CGTGAAGAAATAGGAACTAC+TGG 0.478841 1.3:-6202621 MS.gene051588:CDS
AAAAGGAAGAGAAATCTTCC+TGG 0.478919 1.3:-6204409 MS.gene051588:CDS
TGCATTAAGTGGGGTCTACA+AGG 0.485099 1.3:+6202678 None:intergenic
TATTAGGAAACAAAGTTGTA+GGG 0.486072 1.3:+6202808 None:intergenic
AAAGCTCATTCCAAAATTTG+TGG 0.492046 1.3:-6203487 MS.gene051588:CDS
AAACTCTCTTAGCAACAAAC+AGG 0.496554 1.3:-6203789 MS.gene051588:CDS
GTAAGCAAAATCAAACTCCT+TGG 0.497139 1.3:-6202257 MS.gene051588:CDS
AGATTCTTACCTTGAGAAGA+GGG 0.498855 1.3:+6203435 None:intergenic
GGAAGCACGGTGAGAAGAAG+TGG 0.500086 1.3:-6203555 MS.gene051588:CDS
CACGTGAGTTTGCATTAAGT+GGG 0.505578 1.3:+6202668 None:intergenic
ATCTAGAACCACAAGCCAAA+AGG 0.506626 1.3:-6204426 MS.gene051588:CDS
AACTCACGTGCCTTCAGGAA+TGG 0.520484 1.3:-6202655 MS.gene051588:CDS
AGAGATGATGAAAGGTTTGT+CGG 0.525812 1.3:-6204533 None:intergenic
TGGTGAACACATGTTGGCTC+TGG 0.526908 1.3:+6203631 None:intergenic
CATGACCCTTCAAGGGCACT+TGG 0.527782 1.3:-6203610 MS.gene051588:CDS
TGGGTTGGGAGTAACCATAA+TGG 0.528528 1.3:+6202855 None:intergenic
TCCCAATTTCATCAAAGCCA+TGG 0.529104 1.3:-6202933 MS.gene051588:CDS
GTTATGCAGTTCAGTCGGAT+TGG 0.535164 1.3:-6203510 MS.gene051588:CDS
TATTTCTTCACGTGAAGCCA+TGG 0.551561 1.3:+6202632 None:intergenic
TGCTTACCATGCAAACTCAA+AGG 0.555451 1.3:+6202273 None:intergenic
AGGTCACCAAGTGCCCTTGA+AGG 0.557241 1.3:+6203604 None:intergenic
TAAACGTTATGCAGTTCAGT+CGG 0.567043 1.3:-6203515 MS.gene051588:CDS
CGTGCCTTCAGGAATGGCCA+TGG 0.569617 1.3:-6202649 MS.gene051588:CDS
AAGATTCTTACCTTGAGAAG+AGG 0.572213 1.3:+6203434 None:intergenic
GATGGTCCTTTGAGTTTGCA+TGG 0.572532 1.3:-6202279 MS.gene051588:CDS
CAAGTGCCCTTGAAGGGTCA+TGG 0.580343 1.3:+6203611 None:intergenic
TTACTGCTGCTATGAGCATG+AGG 0.586599 1.3:-6202470 MS.gene051588:CDS
AAAAGCAACATTATAAAGAG+TGG 0.587418 1.3:-6202387 MS.gene051588:CDS
GTGATAGTGGTTGAAAACCA+TGG 0.587939 1.3:+6202916 None:intergenic
TTTGTTGCTAAGAGAGTTTG+GGG 0.590009 1.3:+6203793 None:intergenic
GGAGTGATAGAGATGATGAA+AGG 0.590165 1.3:-6204541 None:intergenic
AGAGAGGACATAATTTGCCA+TGG 0.596190 1.3:-6203708 MS.gene051588:CDS
ATTTGTGAGATTTGTAACAA+AGG 0.598660 1.3:-6203763 MS.gene051588:CDS
GGTCACCAAGTGCCCTTGAA+GGG 0.601914 1.3:+6203605 None:intergenic
AAGCTAGCACTTGTGCCTCA+GGG 0.605138 1.3:+6203821 None:intergenic
CTGTGATAAAACATCACAGA+AGG 0.605312 1.3:+6203001 None:intergenic
GAAGCCATGGCCATTCCTGA+AGG 0.608895 1.3:+6202645 None:intergenic
TGATGTGATGTATGGTAGTG+AGG 0.613764 1.3:-6202517 MS.gene051588:CDS
AATCTTCAGCTTCATAAGAG+AGG 0.614070 1.3:-6203724 MS.gene051588:CDS
TGTTCACCATGACCCTTCAA+GGG 0.614167 1.3:-6203617 MS.gene051588:CDS
GATGTGATGTATGGTAGTGA+GGG 0.620627 1.3:-6202516 MS.gene051588:CDS
AGCAACATTATAAAGAGTGG+TGG 0.627418 1.3:-6202384 MS.gene051588:CDS
CAAAATCAAACTCCTTGGTG+AGG 0.632534 1.3:-6202252 None:intergenic
AGAAATCTTCCTGGCCACCC+AGG 0.633086 1.3:-6204400 MS.gene051588:intron
ACTGTGGAACCCTCTTCTCA+AGG 0.634375 1.3:-6203444 MS.gene051588:intron
AAAGAGTATAAGTGTGACTG+TGG 0.643514 1.3:-6203460 MS.gene051588:CDS
TACTGCTGCTATGAGCATGA+GGG 0.646189 1.3:-6202469 MS.gene051588:CDS
AAAGCAGTGGCAGACATGTG+AGG 0.650724 1.3:+6202750 None:intergenic
GATGATGAAAGGTTTGTCGG+TGG 0.652402 1.3:-6204530 MS.gene051588:CDS
ACGTGAGTTTGCATTAAGTG+GGG 0.666291 1.3:+6202669 None:intergenic
GTGTGATTTAATTACCTGGG+TGG 0.673717 1.3:+6204386 None:intergenic
GGAGAGTGCATCAATTTCAG+CGG 0.685024 1.3:-6202979 MS.gene051588:CDS
CCTGAATATCAGCCTCACCA+AGG 0.685282 1.3:+6202240 None:intergenic
GGGTCATGGTGAACACATGT+TGG 0.693614 1.3:+6203625 None:intergenic
ACTGCTGCTATGAGCATGAG+GGG 0.697079 1.3:-6202468 MS.gene051588:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATCTTATTAATTTAAATT+TGG - chr1.3:6203365-6203384 MS.gene051588:intron 10.0%
!!! CCTATTATTTATTTTTTTTA+GGG - chr1.3:6202853-6202872 MS.gene051588:CDS 10.0%
!! AATATAAATTGGTATATTGA+AGG - chr1.3:6202464-6202483 MS.gene051588:CDS 15.0%
!! CAAGAAAATAATATTACAAT+TGG + chr1.3:6202422-6202441 None:intergenic 15.0%
!! CCCTAAAAAAAATAAATAAT+AGG + chr1.3:6202856-6202875 None:intergenic 15.0%
!!! GCCTATTATTTATTTTTTTT+AGG - chr1.3:6202852-6202871 MS.gene051588:CDS 15.0%
!! AAGAGATAATAATAACTTTG+AGG - chr1.3:6204353-6204372 MS.gene051588:intron 20.0%
!! ACATACAAATCAATTCAAAA+TGG - chr1.3:6203529-6203548 MS.gene051588:CDS 20.0%
!! TTACCTATCAAAAAAAGATA+GGG - chr1.3:6202565-6202584 MS.gene051588:CDS 20.0%
!!! GTTTTACAATTGAATATTTG+TGG - chr1.3:6202906-6202925 MS.gene051588:CDS 20.0%
!!! TTTGAGTTGAAAGAATTATT+AGG + chr1.3:6203994-6204013 None:intergenic 20.0%
! AAAAGCAACATTATAAAGAG+TGG - chr1.3:6204396-6204415 MS.gene051588:intron 25.0%
! ATTTGTGAGATTTGTAACAA+AGG - chr1.3:6203020-6203039 MS.gene051588:CDS 25.0%
! CTTACCTATCAAAAAAAGAT+AGG - chr1.3:6202564-6202583 MS.gene051588:CDS 25.0%
! GATACAAACAAACTAAATCA+TGG - chr1.3:6203396-6203415 MS.gene051588:intron 25.0%
! GGCTGAAAATATTGTTAATT+TGG - chr1.3:6202927-6202946 MS.gene051588:CDS 25.0%
! TATTAGGAAACAAAGTTGTA+GGG + chr1.3:6203978-6203997 None:intergenic 25.0%
! TTATTAGGAAACAAAGTTGT+AGG + chr1.3:6203979-6203998 None:intergenic 25.0%
! TTGAAGGAGTTATATATAGA+AGG - chr1.3:6202480-6202499 MS.gene051588:CDS 25.0%
!! GCTAGTCTAGTAATATAAAT+TGG - chr1.3:6202453-6202472 MS.gene051588:CDS 25.0%
!! TTCAATATATCTGGAATTGA+TGG - chr1.3:6204486-6204505 MS.gene051588:CDS 25.0%
!!! AAACCCTATCTTTTTTTGAT+AGG + chr1.3:6202571-6202590 None:intergenic 25.0%
!!! AATGTTGCTTTTACCAAAAT+GGG + chr1.3:6204388-6204407 None:intergenic 25.0%
!!! AGTTTATTTTTGATTGCAGA+AGG - chr1.3:6203737-6203756 MS.gene051588:CDS 25.0%
!!! GTTTATTTTTGATTGCAGAA+GGG - chr1.3:6203738-6203757 MS.gene051588:CDS 25.0%
!!! GTTTTGATAATGGTTCAAAT+GGG + chr1.3:6203950-6203969 None:intergenic 25.0%
!!! TAATGTTGCTTTTACCAAAA+TGG + chr1.3:6204389-6204408 None:intergenic 25.0%
!!! TGTTAGTAGTTAGTTTGTTA+GGG + chr1.3:6202544-6202563 None:intergenic 25.0%
!!! TGTTCTTTTTTTAGTGATAG+TGG + chr1.3:6203883-6203902 None:intergenic 25.0%
AAAGCTCATTCCAAAATTTG+TGG - chr1.3:6203296-6203315 MS.gene051588:intron 30.0%
ATTGGTGTGATTTAATTACC+TGG + chr1.3:6202404-6202423 None:intergenic 30.0%
CAATATATCACCTAAATCCA+TGG + chr1.3:6202639-6202658 None:intergenic 30.0%
TAAGACCAGAAATTCCATTA+TGG - chr1.3:6203914-6203933 MS.gene051588:intron 30.0%
TGGATTTAGGTGATATATTG+TGG - chr1.3:6202639-6202658 MS.gene051588:CDS 30.0%
TTGGTGTGATTTAATTACCT+GGG + chr1.3:6202403-6202422 None:intergenic 30.0%
! AGAGACTTGTTCAATATATC+TGG - chr1.3:6204477-6204496 MS.gene051588:CDS 30.0%
! AGTAACCATAATGGAATTTC+TGG + chr1.3:6203922-6203941 None:intergenic 30.0%
!! GTGTTAGTAGTTAGTTTGTT+AGG + chr1.3:6202545-6202564 None:intergenic 30.0%
!! TTTCTTTTCTTTAGCTTCCA+TGG + chr1.3:6203095-6203114 None:intergenic 30.0%
!!! ACAAGAGATTTTTTGAGTCT+TGG - chr1.3:6204441-6204460 MS.gene051588:CDS 30.0%
!!! GGTTTTGATAATGGTTCAAA+TGG + chr1.3:6203951-6203970 None:intergenic 30.0%
!!! TACTGGTTTTTCTCATTGTT+TGG - chr1.3:6204179-6204198 MS.gene051588:intron 30.0%
AAAAGGAAGAGAAATCTTCC+TGG - chr1.3:6202374-6202393 MS.gene051588:CDS 35.0%
AAACTCTCTTAGCAACAAAC+AGG - chr1.3:6202994-6203013 MS.gene051588:CDS 35.0%
AAGATTCTTACCTTGAGAAG+AGG + chr1.3:6203352-6203371 None:intergenic 35.0%
AATCTTCAGCTTCATAAGAG+AGG - chr1.3:6203059-6203078 MS.gene051588:intron 35.0%
ACAAAGAAAAGTAGTAGCCA+AGG + chr1.3:6202794-6202813 None:intergenic 35.0%
ACACTGATGCATAGTTACAT+AGG - chr1.3:6202744-6202763 MS.gene051588:CDS 35.0%
AGATTCTTACCTTGAGAAGA+GGG + chr1.3:6203351-6203370 None:intergenic 35.0%
AGCAACATTATAAAGAGTGG+TGG - chr1.3:6204399-6204418 MS.gene051588:intron 35.0%
CAAAGAAAAGTAGTAGCCAA+GGG + chr1.3:6202793-6202812 None:intergenic 35.0%
CTGTGATAAAACATCACAGA+AGG + chr1.3:6203785-6203804 None:intergenic 35.0%
GAAACAAAGTTGTAGGGTTA+GGG + chr1.3:6203972-6203991 None:intergenic 35.0%
GCTTCATAACTCATTTCTCT+TGG + chr1.3:6202615-6202634 None:intergenic 35.0%
GTAAGCAAAATCAAACTCCT+TGG - chr1.3:6204526-6204545 MS.gene051588:CDS 35.0%
TAAACGTTATGCAGTTCAGT+CGG - chr1.3:6203268-6203287 MS.gene051588:intron 35.0%
TCTTGTCATCTCATCATCAT+TGG + chr1.3:6204427-6204446 None:intergenic 35.0%
TTTGTTGCTAAGAGAGTTTG+GGG + chr1.3:6202993-6203012 None:intergenic 35.0%
! AAAGAGTATAAGTGTGACTG+TGG - chr1.3:6203323-6203342 MS.gene051588:intron 35.0%
! AAGAGAGAGAGTACGTAAAA+AGG - chr1.3:6203459-6203478 MS.gene051588:CDS 35.0%
! AGGAAGATTTCTCTTCCTTT+TGG + chr1.3:6202375-6202394 None:intergenic 35.0%
! CTCATTGTTTGGCTTCTTAT+GGG - chr1.3:6204190-6204209 MS.gene051588:intron 35.0%
! CTCTTTAGTGCCACAAATTT+TGG + chr1.3:6203309-6203328 None:intergenic 35.0%
! CTTCTGTGATGTTTTATCAC+AGG - chr1.3:6203783-6203802 MS.gene051588:CDS 35.0%
! GAGGAACAATATTCCCATTT+TGG - chr1.3:6204372-6204391 MS.gene051588:intron 35.0%
! GATAATGGTTCAAATGGGTT+GGG + chr1.3:6203945-6203964 None:intergenic 35.0%
! GTTTGTTGCTAAGAGAGTTT+GGG + chr1.3:6202994-6203013 None:intergenic 35.0%
! TCTCATTGTTTGGCTTCTTA+TGG - chr1.3:6204189-6204208 MS.gene051588:intron 35.0%
! TGTTGAAGCTTTTCCATTCT+TGG + chr1.3:6202336-6202355 None:intergenic 35.0%
! TGTTTGTTGCTAAGAGAGTT+TGG + chr1.3:6202995-6203014 None:intergenic 35.0%
!! AACCATGGCTTTGATGAAAT+TGG + chr1.3:6203855-6203874 None:intergenic 35.0%
!! ACCATGGCTTTGATGAAATT+GGG + chr1.3:6203854-6203873 None:intergenic 35.0%
!! CTGCAAAAAGCATCACAAAT+AGG - chr1.3:6204057-6204076 MS.gene051588:intron 35.0%
!! TAGGGTTAGGGTTTTGATAA+TGG + chr1.3:6203960-6203979 None:intergenic 35.0%
!! TAGTTAGTTTGTTAGGGAAG+TGG + chr1.3:6202538-6202557 None:intergenic 35.0%
!! TGATAATGGTTCAAATGGGT+TGG + chr1.3:6203946-6203965 None:intergenic 35.0%
!!! GAATCAAGAAGCACTTTTTC+AGG - chr1.3:6203207-6203226 MS.gene051588:intron 35.0%
ACGTGAGTTTGCATTAAGTG+GGG + chr1.3:6204117-6204136 None:intergenic 40.0%
AGTGCTTCTTGATTCCAGTT+AGG + chr1.3:6203202-6203221 None:intergenic 40.0%
ATGGCTTCACGTGAAGAAAT+AGG - chr1.3:6204153-6204172 MS.gene051588:intron 40.0%
CACGTGAGTTTGCATTAAGT+GGG + chr1.3:6204118-6204137 None:intergenic 40.0%
CGTGAAGAAATAGGAACTAC+TGG - chr1.3:6204162-6204181 MS.gene051588:intron 40.0%
CTCTTGCATGATGTGATGTA+TGG - chr1.3:6204258-6204277 MS.gene051588:intron 40.0%
GGAAACAAAGTTGTAGGGTT+AGG + chr1.3:6203973-6203992 None:intergenic 40.0%
GTGTGATTTAATTACCTGGG+TGG + chr1.3:6202400-6202419 None:intergenic 40.0%
TATTTCTTCACGTGAAGCCA+TGG + chr1.3:6204154-6204173 None:intergenic 40.0%
TCCCAATTTCATCAAAGCCA+TGG - chr1.3:6203850-6203869 MS.gene051588:intron 40.0%
TCTGATGATCGTGTTAGAGT+CGG + chr1.3:6202681-6202700 None:intergenic 40.0%
TGCTTACCATGCAAACTCAA+AGG + chr1.3:6204513-6204532 None:intergenic 40.0%
! AAATGAGTTATGAAGCGCCA+TGG - chr1.3:6202619-6202638 MS.gene051588:CDS 40.0%
! AGAGAGGACATAATTTGCCA+TGG - chr1.3:6203075-6203094 MS.gene051588:intron 40.0%
! ATCTAGAACCACAAGCCAAA+AGG - chr1.3:6202357-6202376 MS.gene051588:CDS 40.0%
! GATGTGATGTATGGTAGTGA+GGG - chr1.3:6204267-6204286 MS.gene051588:intron 40.0%
! TGATGTGATGTATGGTAGTG+AGG - chr1.3:6204266-6204285 MS.gene051588:intron 40.0%
! TTATGAAGCGCCATGGATTT+AGG - chr1.3:6202626-6202645 MS.gene051588:CDS 40.0%
!! GTGATAGTGGTTGAAAACCA+TGG + chr1.3:6203870-6203889 None:intergenic 40.0%
!!! AAGCACTTTTTCAGGAAGCA+CGG - chr1.3:6203215-6203234 MS.gene051588:intron 40.0%
!!! TTTCTCTTCCTTTTGGCTTG+TGG + chr1.3:6202368-6202387 None:intergenic 40.0%
ATTTAATTACCTGGGTGGCC+AGG + chr1.3:6202395-6202414 None:intergenic 45.0%
GCACGTGAGTTTGCATTAAG+TGG + chr1.3:6204119-6204138 None:intergenic 45.0%
GCTTCTTCAGCAACCAAGAA+TGG - chr1.3:6202320-6202339 MS.gene051588:CDS 45.0%
GGGAGTGAGAAGAGAATAGA+GGG + chr1.3:6203834-6203853 None:intergenic 45.0%
GTGTTTGACGTTTACTCTGC+AGG - chr1.3:6203586-6203605 MS.gene051588:CDS 45.0%
GTTATGCAGTTCAGTCGGAT+TGG - chr1.3:6203273-6203292 MS.gene051588:intron 45.0%
TACTGCTGCTATGAGCATGA+GGG - chr1.3:6204314-6204333 MS.gene051588:intron 45.0%
TGCATTAAGTGGGGTCTACA+AGG + chr1.3:6204108-6204127 None:intergenic 45.0%
TGGGAGTGAGAAGAGAATAG+AGG + chr1.3:6203835-6203854 None:intergenic 45.0%
TGTTCACCATGACCCTTCAA+GGG - chr1.3:6203166-6203185 MS.gene051588:intron 45.0%
TTACTGCTGCTATGAGCATG+AGG - chr1.3:6204313-6204332 MS.gene051588:intron 45.0%
! GATGGTCCTTTGAGTTTGCA+TGG - chr1.3:6204504-6204523 MS.gene051588:CDS 45.0%
! GGAGAGTGCATCAATTTCAG+CGG - chr1.3:6203804-6203823 MS.gene051588:CDS 45.0%
! TGGGTTGGGAGTAACCATAA+TGG + chr1.3:6203931-6203950 None:intergenic 45.0%
!! TGCTTTTTGCAGCAAAGCAG+TGG + chr1.3:6204049-6204068 None:intergenic 45.0%
!!! TGGTTTTGTTTCAGACCCTG+AGG - chr1.3:6202947-6202966 MS.gene051588:CDS 45.0%
!! ATATAACATTAATATATAAT+AGG + chr1.3:6202885-6202904 None:intergenic 5.0%
AAAGCAGTGGCAGACATGTG+AGG + chr1.3:6204036-6204055 None:intergenic 50.0%
AAAGCTAGCACTTGTGCCTC+AGG + chr1.3:6202966-6202985 None:intergenic 50.0%
AACTCACGTGCCTTCAGGAA+TGG - chr1.3:6204128-6204147 MS.gene051588:intron 50.0%
AAGCTAGCACTTGTGCCTCA+GGG + chr1.3:6202965-6202984 None:intergenic 50.0%
ACTGCTGCTATGAGCATGAG+GGG - chr1.3:6204315-6204334 MS.gene051588:intron 50.0%
ACTGTGGAACCCTCTTCTCA+AGG - chr1.3:6203339-6203358 MS.gene051588:intron 50.0%
ATGCAAACTCACGTGCCTTC+AGG - chr1.3:6204123-6204142 MS.gene051588:intron 50.0%
GGGTCATGGTGAACACATGT+TGG + chr1.3:6203161-6203180 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG - chr1.3:6203165-6203184 MS.gene051588:intron 50.0%
TAGGTAGCAGTAGCACCATG+AGG - chr1.3:6202763-6202782 MS.gene051588:CDS 50.0%
!! TGGTGAACACATGTTGGCTC+TGG + chr1.3:6203155-6203174 None:intergenic 50.0%
AGAAATCTTCCTGGCCACCC+AGG - chr1.3:6202383-6202402 MS.gene051588:CDS 55.0%
AGGTCACCAAGTGCCCTTGA+AGG + chr1.3:6203182-6203201 None:intergenic 55.0%
CAAGTGCCCTTGAAGGGTCA+TGG + chr1.3:6203175-6203194 None:intergenic 55.0%
GAAGCCATGGCCATTCCTGA+AGG + chr1.3:6204141-6204160 None:intergenic 55.0%
GGTCACCAAGTGCCCTTGAA+GGG + chr1.3:6203181-6203200 None:intergenic 55.0%
! AGGGCACTTGGTGACCTAAC+TGG - chr1.3:6203185-6203204 MS.gene051588:intron 55.0%
! GGAAGCACGGTGAGAAGAAG+TGG - chr1.3:6203228-6203247 MS.gene051588:intron 55.0%
!! CATGACCCTTCAAGGGCACT+TGG - chr1.3:6203173-6203192 MS.gene051588:intron 55.0%
CGTGCCTTCAGGAATGGCCA+TGG - chr1.3:6204134-6204153 MS.gene051588:intron 60.0%
! AGCACCATGAGGTGCTCCCT+TGG - chr1.3:6202774-6202793 MS.gene051588:CDS 60.0%
!! GTAGCCAAGGGAGCACCTCA+TGG + chr1.3:6202781-6202800 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 6202254 6204551 6202254 ID=MS.gene051588
chr1.3 mRNA 6202254 6204551 6202254 ID=MS.gene051588.t1;Parent=MS.gene051588
chr1.3 exon 6204401 6204551 6204401 ID=MS.gene051588.t1.exon1;Parent=MS.gene051588.t1
chr1.3 CDS 6204401 6204551 6204401 ID=cds.MS.gene051588.t1;Parent=MS.gene051588.t1
chr1.3 exon 6203445 6203844 6203445 ID=MS.gene051588.t1.exon2;Parent=MS.gene051588.t1
chr1.3 CDS 6203445 6203844 6203445 ID=cds.MS.gene051588.t1;Parent=MS.gene051588.t1
chr1.3 exon 6202254 6203049 6202254 ID=MS.gene051588.t1.exon3;Parent=MS.gene051588.t1
chr1.3 CDS 6202254 6203049 6202254 ID=cds.MS.gene051588.t1;Parent=MS.gene051588.t1
Gene Sequence

>MS.gene051588

ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAGCCAAAAGGAAGAGAAATCTTCCTGGCCACCCAGGTAATTAAATCACACCAATTGTAATATTATTTTCTTGTTCATGAAGTAGCTAGTCTAGTAATATAAATTGGTATATTGAAGGAGTTATATATAGAAGGTGTAGTGTTTGATATTTGTTACTCAACATTTTCCACTTCCCTAACAAACTAACTACTAACACTTACCTATCAAAAAAAGATAGGGTTTAATTTGTGCAACAATCTATCACCAAGAGAAATGAGTTATGAAGCGCCATGGATTTAGGTGATATATTGTGGTATGAGTTATGAAGCACCGACTCTAACACGATCATCAGACATGACACTAGCATGTTGACACTTTTAACTTCAAAAACATAGCACACTGATGCATAGTTACATAGGTAGCAGTAGCACCATGAGGTGCTCCCTTGGCTACTACTTTTCTTTGTAAAAGAAAAATTGAAAAAAAATGTCGTCTAAATTATTAGCCTATTATTTATTTTTTTTAGGGAATTAGCCTATTATATATTAATGTTATATTGTTTTACAATTGAATATTTGTGGCTGAAAATATTGTTAATTTGGTTTTGTTTCAGACCCTGAGGCACAAGTGCTAGCTTTGAGTCCCCAAACTCTCTTAGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAGAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACGTCAATGAAATCATAAGAAAGAAAGTGTATGTTTGTCCAGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAACGTTATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTCTTCTCAAGGTAAGAATCTTATTAATTTAAATTTGGTCATTATAGATACAAACAAACTAAATCATGGTACGTTCAATAATAATGAGTCAAAAAATCAAAAAAGAGATAAGAGAGAGAGTACGTAAAAAGGTAAAAAGTGCTTAAACAGTATTTTATTAGTTCATAGAAAATGTTGTGACATACAAATCAATTCAAAATGGTCAGATAATTGTTTGAGAGAACTTGAATTCAAATGTGTTTGACGTTTACTCTGCAGGTAACAAACTATAATGCATGTATTTTTTCAATATATATTTGAGATTAATTAAATAATGATATGATGTATATACTTTAAATTTAAGTTACTCTCATGACAAAATTATATTTAATTCATCAAATAATTTTGAGTTTATTTTTGATTGCAGAAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGTTTTATCACAGGAGAGTGCATCAATTTCAGCGGTGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCAAAGCCATGGTTTTCAACCACTATCACTAAAAAAAGAACAAGACTTCAATTTAAGACCAGAAATTCCATTATGGTTACTCCCAACCCATTTGAACCATTATCAAAACCCTAACCCTACAACTTTGTTTCCTAATAATTCTTTCAACTCAAACAATATAACTACTGCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGTAACGACAGTGAGTAAAACAGAACCTTGTAGACCCCACTTAATGCAAACTCACGTGCCTTCAGGAATGGCCATGGCTTCACGTGAAGAAATAGGAACTACTGGTTTTTCTCATTGTTTGGCTTCTTATGGGAATAAAGCTGCAATAACTTCTGATTGCTTTGAAGAATCTTCTTCTCTCTTGCATGATGTGATGTATGGTAGTGAGGGCTCACATTCACAATTTGAAGCTGTTACTGCTGCTATGAGCATGAGGGGAATGTTTGATACACAAAGAGATAATAATAACTTTGAGGAACAATATTCCCATTTTGGTAAAAGCAACATTATAAAGAGTGGTGGTGCCAATGATGATGAGATGACAAGAGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGTCCTTTGAGTTTGCATGGTAAGCAAAATCAAACTCCTTGGTGA

Protein sequence

>MS.gene051588.t1

MMKGLSVDENMSNLTSASSEISASSATKNGKASTNLEPQAKRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAVNPLFSSHSQFHQSHGFQPLSLKKEQDFNLRPEIPLWLLPTHLNHYQNPNPTTLFPNNSFNSNNITTASPHMSATALLQKASQIGVTTVSKTEPCRPHLMQTHVPSGMAMASREEIGTTGFSHCLASYGNKAAITSDCFEESSSLLHDVMYGSEGSHSQFEAVTAAMSMRGMFDTQRDNNNFEEQYSHFGKSNIIKSGGANDDEMTRDFLSLGAFSQRDLFNISGIDGPLSLHGKQNQTPW