AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059683.t1 MTR_5g014140 93.548 558 26 2 1 558 1 548 0.0 1060
MS.gene059683.t1 MTR_5g014140 91.626 406 21 3 1 403 1 396 0.0 741
MS.gene059683.t1 MTR_6g034195 71.487 491 137 1 67 557 88 575 0.0 741
MS.gene059683.t1 MTR_1g099360 73.885 471 123 0 86 556 102 572 0.0 739
MS.gene059683.t1 MTR_1g076540 43.908 476 245 7 88 542 90 564 7.78e-123 373
MS.gene059683.t1 MTR_1g105965 41.189 488 264 9 88 556 91 574 2.01e-111 344
MS.gene059683.t1 MTR_4g083340 39.702 403 229 8 83 474 3 402 7.72e-89 283
MS.gene059683.t1 MTR_7g100760 39.552 402 229 8 84 474 7 405 1.36e-87 280
MS.gene059683.t1 MTR_6g004020 37.342 474 266 11 88 532 21 492 3.19e-86 276
MS.gene059683.t1 MTR_4g083330 38.575 407 215 9 83 481 6 385 7.75e-81 261
MS.gene059683.t1 MTR_1g105965 44.884 303 156 5 88 380 91 392 6.16e-79 254
MS.gene059683.t1 MTR_1g091040 30.000 410 255 11 89 475 30 430 3.45e-46 170
MS.gene059683.t1 MTR_1g061630 28.713 404 253 11 89 475 30 415 1.07e-43 163
MS.gene059683.t1 MTR_7g103420 28.218 404 271 9 89 475 30 431 1.23e-43 163
MS.gene059683.t1 MTR_7g103420 28.218 404 271 9 89 475 30 431 1.51e-43 162
MS.gene059683.t1 MTR_1g061630 29.064 406 265 11 89 475 30 431 2.63e-43 162
MS.gene059683.t1 MTR_1g105965 39.623 212 118 4 88 290 91 301 1.65e-41 152
MS.gene059683.t1 MTR_1g091040 31.317 281 172 7 208 475 25 297 6.60e-32 127
MS.gene059683.t1 MTR_7g103420 27.114 343 232 8 150 475 1 342 1.85e-31 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059683.t1 AT1G32440 78.270 474 102 1 83 556 95 567 0.0 781
MS.gene059683.t1 AT5G52920 73.885 471 123 0 86 556 109 579 0.0 749
MS.gene059683.t1 AT3G22960 43.671 474 247 8 88 542 118 590 1.35e-117 360
MS.gene059683.t1 AT5G56350 39.609 409 233 8 84 481 5 410 6.52e-90 286
MS.gene059683.t1 AT4G26390 37.188 441 252 8 84 501 4 442 1.28e-88 282
MS.gene059683.t1 AT5G63680 37.967 482 263 13 83 532 15 492 4.62e-87 278
MS.gene059683.t1 AT5G63680 37.967 482 263 13 83 532 15 492 4.62e-87 278
MS.gene059683.t1 AT5G63680 37.967 482 263 13 83 532 15 492 4.62e-87 278
MS.gene059683.t1 AT3G25960 35.307 473 272 9 86 532 15 479 1.82e-86 276
MS.gene059683.t1 AT3G55650 38.519 405 239 6 86 481 15 418 5.16e-86 276
MS.gene059683.t1 AT5G08570 36.709 474 269 10 88 532 21 492 6.12e-86 276
MS.gene059683.t1 AT5G08570 36.709 474 269 10 88 532 21 492 6.12e-86 276
MS.gene059683.t1 AT5G08570 36.709 474 269 10 88 532 21 492 6.12e-86 276
MS.gene059683.t1 AT3G04050 33.126 483 282 10 86 532 15 492 3.20e-80 261
MS.gene059683.t1 AT3G55810 35.109 413 226 9 86 482 15 401 4.82e-70 233
MS.gene059683.t1 AT3G52990 27.869 488 300 16 89 537 30 504 1.01e-45 169
MS.gene059683.t1 AT2G36580 27.459 488 302 15 89 537 30 504 5.95e-44 164
MS.gene059683.t1 AT3G52990 27.371 464 285 16 113 537 1 451 2.49e-40 153
MS.gene059683.t1 AT3G49160 30.568 229 141 6 196 413 473 694 2.76e-20 95.5
MS.gene059683.t1 AT3G49160 30.568 229 141 6 196 413 385 606 4.31e-20 94.7

Find 120 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACTCTTCTTCGCTTTA+TGG 0.078528 5.1:+6974135 MS.gene059683:CDS
GCTGATGCTGTCATGCTTTC+AGG 0.174287 5.1:+6977553 MS.gene059683:CDS
ACTGGTTGGAGGAGGTTATT+TGG 0.214557 5.1:-6973977 None:intergenic
TCCCCTTCTTTGAGTAAAAT+TGG 0.214804 5.1:-6974519 None:intergenic
CTGGTTGGAGGAGGTTATTT+GGG 0.225464 5.1:-6973976 None:intergenic
TAGAGTGGTTTATGAGTTAA+AGG 0.244503 5.1:+6975161 MS.gene059683:CDS
ATATTTGTTGCCACAATAAC+TGG 0.253207 5.1:-6977454 None:intergenic
CTACTAAGCATAAGCATAAT+AGG 0.283664 5.1:+6973934 MS.gene059683:CDS
CTAGCTCACGTGACATGATT+TGG 0.304407 5.1:+6974229 MS.gene059683:CDS
TTATGGAAGCTCAAATGATT+TGG 0.306013 5.1:-6978234 None:intergenic
CATCAGATTACCTGCAATAA+AGG 0.308265 5.1:-6976489 None:intergenic
CCCATCTGAAGCTGAAAGTA+TGG 0.322009 5.1:-6975392 None:intergenic
TTTGAAAATTGCATGTATAT+AGG 0.322417 5.1:-6978852 None:intergenic
GAAAGTATGGAATGAAGATT+TGG 0.359728 5.1:-6975379 None:intergenic
ATTATTGTGTTCACCAGAAC+TGG 0.366269 5.1:+6978476 MS.gene059683:CDS
GTTCTGGTGAACACAATAAT+AGG 0.368132 5.1:-6978473 None:intergenic
TGAAGAAGTTCCTTTATTGC+AGG 0.368254 5.1:+6976479 MS.gene059683:CDS
TTATGCATGCGGTGGCTCTA+AGG 0.369389 5.1:+6978178 MS.gene059683:CDS
CTTTATGGTACGTGGCGAAC+AGG 0.375273 5.1:+6974150 MS.gene059683:CDS
CAACAGAATTATACCAGTTA+TGG 0.376774 5.1:-6974942 None:intergenic
ATTTGGAAACTCGCTCAAAC+TGG 0.377742 5.1:+6974246 MS.gene059683:CDS
ATTCAAGTTCGCGAGGTTCA+TGG 0.386523 5.1:+6979093 MS.gene059683:CDS
GCAACGCTTCCTTCCATAAC+TGG 0.387501 5.1:+6974929 MS.gene059683:CDS
AATAGCCATGGATCCAGTTC+TGG 0.406106 5.1:-6978489 None:intergenic
TAGAATGAAATGGAAGTTGT+TGG 0.423842 5.1:-6973914 None:intergenic
GACTGGGAAGATATCAAATT+CGG 0.436482 5.1:+6975090 MS.gene059683:CDS
AATAAAGGAACTTCTTCAAC+AGG 0.439066 5.1:-6976474 None:intergenic
GTTAAATGTGAAGTTATTGA+TGG 0.440375 5.1:+6974860 MS.gene059683:CDS
ATGGTTGCTCGTGGGGACCT+TGG 0.459485 5.1:+6976441 MS.gene059683:CDS
AAAGCGGAGCACAACCAATC+TGG 0.463651 5.1:+6979049 MS.gene059683:CDS
AGGCAAACATTGCTCCCATA+TGG 0.465978 5.1:-6978415 None:intergenic
TTGTTGAGTAGGGCCTATAA+TGG 0.470791 5.1:-6978520 None:intergenic
ACAAAGATCGTGTGCACGAT+TGG 0.474868 5.1:+6974198 MS.gene059683:CDS
AACCTTGGTGTCAAGCATGA+TGG 0.477591 5.1:-6974376 None:intergenic
TTTAGGAGGAATGATGTCTC+TGG 0.478177 5.1:+6974811 MS.gene059683:intron
AAATCATTTGAGCTTCCATA+AGG 0.479866 5.1:+6978236 MS.gene059683:CDS
ATGTCACGTGAGCTAGTAGA+TGG 0.481868 5.1:-6974222 None:intergenic
GTTAATAATACTTACGAGAG+TGG 0.482443 5.1:-6974003 None:intergenic
ATGGCGGAGAATTGAAATCT+AGG 0.484689 5.1:+6974879 MS.gene059683:CDS
AGACATAATTGTTGCATGGA+AGG 0.485758 5.1:-6978435 None:intergenic
TTGTTGGGAGATGGAATTGG+AGG 0.488962 5.1:-6973898 None:intergenic
GAAAGCAAATATTGTTGAGT+AGG 0.489292 5.1:-6978531 None:intergenic
TCCATACTTTCAGCTTCAGA+TGG 0.490595 5.1:+6975391 MS.gene059683:CDS
AGGAAGGATTAAGCAGAGGT+TGG 0.491594 5.1:+6978809 MS.gene059683:CDS
AAGTTGTTGGGAGATGGAAT+TGG 0.494485 5.1:-6973901 None:intergenic
TACTTACGAGAGTGGGAGAC+TGG 0.497804 5.1:-6973995 None:intergenic
AGAATGAAATGGAAGTTGTT+GGG 0.497944 5.1:-6973913 None:intergenic
AGGCGTCATTTGAATGTTCG+TGG 0.498628 5.1:+6974899 MS.gene059683:CDS
ATGGATTCCGCACGCCAGAT+TGG 0.500210 5.1:-6979063 None:intergenic
TTGTAGGCAATGGTTGCTCG+TGG 0.504158 5.1:+6976432 MS.gene059683:intron
TATGGAATGAAGATTTGGTA+TGG 0.504548 5.1:-6975374 None:intergenic
TCTTTGAGTAAAATTGGTTG+TGG 0.506244 5.1:-6974513 None:intergenic
GGAAGGATTAAGCAGAGGTT+GGG 0.506385 5.1:+6978810 MS.gene059683:CDS
TGTAGGCAATGGTTGCTCGT+GGG 0.507482 5.1:+6976433 MS.gene059683:intron
CTTCTTATGCTGCAGAGTAA+AGG 0.507893 5.1:+6978991 MS.gene059683:intron
CCATACTTTCAGCTTCAGAT+GGG 0.512422 5.1:+6975392 MS.gene059683:CDS
TTATCTTCACAGAAAAGGAC+TGG 0.512596 5.1:+6975073 MS.gene059683:intron
ATAACTTTAACAGATTTCAA+TGG 0.520035 5.1:-6978159 None:intergenic
GACTTCCGCCCTAGTTGGTG+TGG 0.524986 5.1:-6977500 None:intergenic
AGAATCACTTCTTAAAACAC+TGG 0.527093 5.1:-6978208 None:intergenic
TACGAGAGTGGGAGACTGGT+TGG 0.531081 5.1:-6973991 None:intergenic
TTTGTCAATGATGTCGAGGT+TGG 0.531439 5.1:+6974609 MS.gene059683:CDS
AAATGGAAGTTGTTGGGAGA+TGG 0.534950 5.1:-6973907 None:intergenic
GTAGGCAATGGTTGCTCGTG+GGG 0.538287 5.1:+6976434 MS.gene059683:intron
GGAGACGTTCTTCTCGTCGA+TGG 0.538636 5.1:+6974630 MS.gene059683:CDS
TTTATGGTACGTGGCGAACA+GGG 0.539109 5.1:+6974151 MS.gene059683:CDS
TTATGCTTAGTAGAATGAAA+TGG 0.541753 5.1:-6973924 None:intergenic
AAAGCAAATATTGTTGAGTA+GGG 0.543382 5.1:-6978530 None:intergenic
GGTACGTGGCGAACAGGGGA+AGG 0.543690 5.1:+6974156 MS.gene059683:CDS
TTAATAATACTTACGAGAGT+GGG 0.544034 5.1:-6974002 None:intergenic
TAGAGCTCTCAAACTACTGT+TGG 0.548085 5.1:+6978896 MS.gene059683:CDS
AGATTTGAAGAGAGAAGACG+TGG 0.548216 5.1:-6973850 None:intergenic
TTATTCATCCCACACCAACT+AGG 0.548728 5.1:+6977491 MS.gene059683:CDS
CTTCTTCGCTTTATGGTACG+TGG 0.549723 5.1:+6974142 MS.gene059683:CDS
TATTCATCCCACACCAACTA+GGG 0.551145 5.1:+6977492 MS.gene059683:CDS
TCTGAGACTTCCGCCCTAGT+TGG 0.552113 5.1:-6977505 None:intergenic
AATGCAAAAGCCAGTTATTG+TGG 0.555416 5.1:+6977444 MS.gene059683:CDS
ACATCCCCACTTCTAACTTC+AGG 0.560293 5.1:-6974489 None:intergenic
CGCTCAAACTGGAATGAATG+TGG 0.563608 5.1:+6974257 MS.gene059683:CDS
GCGAACTTGAATGTGGTGAA+TGG 0.564425 5.1:-6979082 None:intergenic
AGTGGGAGACTGGTTGGAGG+AGG 0.565230 5.1:-6973985 None:intergenic
TATTAGACATAATTGTTGCA+TGG 0.566112 5.1:-6978439 None:intergenic
ATTTGTCAAGGATGCTAGAG+TGG 0.569048 5.1:+6975146 MS.gene059683:CDS
TTCCATCATGCTTGACACCA+AGG 0.575678 5.1:+6974374 MS.gene059683:CDS
TAAGTCAAAGACAAAAGACT+TGG 0.575703 5.1:+6974838 MS.gene059683:CDS
ATGGCTCAAAAGAATAGCCA+TGG 0.577093 5.1:-6978501 None:intergenic
TGGTTGGAGGAGGTTATTTG+GGG 0.581391 5.1:-6973975 None:intergenic
CTATGCTGTATCATTTGTCA+AGG 0.582412 5.1:+6975134 MS.gene059683:CDS
TATCTTCACAGAAAAGGACT+GGG 0.583985 5.1:+6975074 MS.gene059683:intron
GAGAGTGGGAGACTGGTTGG+AGG 0.588953 5.1:-6973988 None:intergenic
CAACAGGAAGTTCAGCTCCA+AGG 0.592964 5.1:-6976458 None:intergenic
AAATGTGAAGTTATTGATGG+CGG 0.593438 5.1:+6974863 MS.gene059683:CDS
CAGGGTCCTGAAGTTAGAAG+TGG 0.601265 5.1:+6974483 MS.gene059683:intron
GTTCACCAGAACTGGATCCA+TGG 0.601626 5.1:+6978484 MS.gene059683:CDS
CTCGTTTGAATATGTCACAT+GGG 0.602332 5.1:+6974280 MS.gene059683:CDS
AGGGTCCTGAAGTTAGAAGT+GGG 0.603493 5.1:+6974484 MS.gene059683:intron
CTTTCAGGAGAAACCGCACA+TGG 0.609257 5.1:+6977568 MS.gene059683:CDS
AGAATTATACCAGTTATGGA+AGG 0.618973 5.1:-6974938 None:intergenic
ACAGAGGAAGGATTAAGCAG+AGG 0.619421 5.1:+6978805 MS.gene059683:intron
GCAAACACACTTTCCATGTG+CGG 0.620007 5.1:-6977581 None:intergenic
TAGTTTGAGAGCTCTAGCAA+AGG 0.632195 5.1:-6978889 None:intergenic
ACTTCCGCCCTAGTTGGTGT+GGG 0.639256 5.1:-6977499 None:intergenic
CATACTTTCAGCTTCAGATG+GGG 0.642578 5.1:+6975393 MS.gene059683:CDS
AGTAAAGGTCATTTAGACGA+GGG 0.650023 5.1:+6979006 MS.gene059683:CDS
TTATGGTACGTGGCGAACAG+GGG 0.652515 5.1:+6974152 MS.gene059683:CDS
TCACCACATTCAAGTTCGCG+AGG 0.654208 5.1:+6979086 MS.gene059683:CDS
TGTTAAAGTTATGCATGCGG+TGG 0.657671 5.1:+6978170 MS.gene059683:CDS
TATGTTACTCTTGTTCAAAG+CGG 0.659469 5.1:+6979033 MS.gene059683:CDS
AGCACAACCAATCTGGCGTG+CGG 0.662564 5.1:+6979056 MS.gene059683:CDS
GATTTGAAGAGAGAAGACGT+GGG 0.664172 5.1:-6973849 None:intergenic
GTAAAGGTCATTTAGACGAG+GGG 0.667617 5.1:+6979007 MS.gene059683:CDS
GCTCGTTTGAATATGTCACA+TGG 0.667972 5.1:+6974279 MS.gene059683:CDS
GAGTAAAGGTCATTTAGACG+AGG 0.670895 5.1:+6979005 MS.gene059683:intron
TCATCCCACACCAACTAGGG+CGG 0.676041 5.1:+6977495 MS.gene059683:CDS
GGGTCCTGAAGTTAGAAGTG+GGG 0.678048 5.1:+6974485 MS.gene059683:intron
ATTGCAATTGCAGTAAGACA+AGG 0.681715 5.1:+6977529 MS.gene059683:CDS
TCGTTTGAATATGTCACATG+GGG 0.683251 5.1:+6974281 MS.gene059683:CDS
GAACCTCGCGAACTTGAATG+TGG 0.702421 5.1:-6979089 None:intergenic
ATCTGTTAAAGTTATGCATG+CGG 0.709524 5.1:+6978167 MS.gene059683:CDS
GGTTGGAGGAGGTTATTTGG+GGG 0.775151 5.1:-6973974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTATAGTAAAATATAT+AGG + chr5.1:6976772-6976791 MS.gene059683:intron 10.0%
!! TTTATTAAACATATAAAAAC+TGG + chr5.1:6975468-6975487 MS.gene059683:intron 10.0%
!!! GTTTTTATATGTTTAATAAA+AGG - chr5.1:6975468-6975487 None:intergenic 10.0%
!! AAATATAAGGATAAATAGAA+TGG + chr5.1:6977789-6977808 MS.gene059683:intron 15.0%
!! AATGTAAACACAAATTAATT+AGG - chr5.1:6978385-6978404 None:intergenic 15.0%
!! CACAAATAAATATAATACTT+TGG - chr5.1:6976378-6976397 None:intergenic 15.0%
!! GATTATTATAAACACAAAAT+TGG - chr5.1:6974706-6974725 None:intergenic 15.0%
!! TTAAAAAAAGATGACAAATT+AGG - chr5.1:6978037-6978056 None:intergenic 15.0%
!! TTGAACTGATAAAATAAAAA+AGG - chr5.1:6977627-6977646 None:intergenic 15.0%
!!! ACATTTCAAGTTAAAAATAT+CGG + chr5.1:6975565-6975584 MS.gene059683:intron 15.0%
!!! ATGTTTGATAATCATTATTT+TGG + chr5.1:6976588-6976607 MS.gene059683:intron 15.0%
!!! ATTTACTTTTTAAAATGTCT+AGG - chr5.1:6977880-6977899 None:intergenic 15.0%
!!! ATTTGAATCTTTTGTTTTAT+AGG - chr5.1:6977104-6977123 None:intergenic 15.0%
!!! TCAATTTTACTATTAAAAGA+GGG + chr5.1:6974547-6974566 MS.gene059683:CDS 15.0%
!!! TTCAATTTTACTATTAAAAG+AGG + chr5.1:6974546-6974565 MS.gene059683:CDS 15.0%
!! AATACATAATTTGAACAATG+AGG - chr5.1:6975425-6975444 None:intergenic 20.0%
!! ACAGACTATTTATATAAATG+AGG + chr5.1:6976807-6976826 MS.gene059683:intron 20.0%
!! ACCATAAAAAATGTTTATGA+AGG + chr5.1:6977151-6977170 MS.gene059683:intron 20.0%
!! ATAAAATAAAAAAGGAACCA+TGG - chr5.1:6977619-6977638 None:intergenic 20.0%
!! ATAACTTTAACAGATTTCAA+TGG - chr5.1:6978162-6978181 None:intergenic 20.0%
!! CAGACTATTTATATAAATGA+GGG + chr5.1:6976808-6976827 MS.gene059683:intron 20.0%
!! GATATTATCAATCAAATCTA+CGG - chr5.1:6978356-6978375 None:intergenic 20.0%
!! GATCATATTATATTATCTTG+AGG + chr5.1:6978727-6978746 MS.gene059683:intron 20.0%
!! TACAATTAGATGATTACTAA+TGG - chr5.1:6976351-6976370 None:intergenic 20.0%
!! TATTATAAACACAAAATTGG+AGG - chr5.1:6974703-6974722 None:intergenic 20.0%
!! TCGCAAAATTATTAAAAGAA+CGG - chr5.1:6977301-6977320 None:intergenic 20.0%
!! TTATATTATCTTGAGGTAAT+AGG + chr5.1:6978734-6978753 MS.gene059683:intron 20.0%
!! TTTGAAAATTGCATGTATAT+AGG - chr5.1:6978855-6978874 None:intergenic 20.0%
!!! ACACAAATTAATTAGGTTTT+AGG - chr5.1:6978378-6978397 None:intergenic 20.0%
!!! ATATCTTTTCACTGATATTT+AGG + chr5.1:6977335-6977354 MS.gene059683:intron 20.0%
!!! CAAAAACATAATTACTTTTG+AGG - chr5.1:6975191-6975210 None:intergenic 20.0%
!!! TCCTTCATAAACATTTTTTA+TGG - chr5.1:6977155-6977174 None:intergenic 20.0%
! AAAGCAAATATTGTTGAGTA+GGG - chr5.1:6978533-6978552 None:intergenic 25.0%
! AAATATATAGGAGTAGATGA+TGG + chr5.1:6976784-6976803 MS.gene059683:intron 25.0%
! AAGAAGAATAGTTGTTAATC+CGG - chr5.1:6974461-6974480 None:intergenic 25.0%
! AAGGGAAACAAACAAATATA+AGG + chr5.1:6977776-6977795 MS.gene059683:intron 25.0%
! AGAGAATATCCATCAAAAAA+AGG - chr5.1:6978954-6978973 None:intergenic 25.0%
! ATGTTTATGAAGGAATTCAT+TGG + chr5.1:6977161-6977180 MS.gene059683:intron 25.0%
! ATTCCTCCTAAAATAACAAT+GGG - chr5.1:6974803-6974822 None:intergenic 25.0%
! CTATGACTAAAAATTTGAGA+CGG + chr5.1:6976870-6976889 MS.gene059683:intron 25.0%
! CTCGATAAAGAAACTAAAAA+TGG + chr5.1:6975541-6975560 MS.gene059683:intron 25.0%
! GTGAAATAAGAAGTTATAGA+TGG - chr5.1:6978781-6978800 None:intergenic 25.0%
! GTTAAATGTGAAGTTATTGA+TGG + chr5.1:6974860-6974879 MS.gene059683:CDS 25.0%
! TATTAGACATAATTGTTGCA+TGG - chr5.1:6978442-6978461 None:intergenic 25.0%
! TGATATAAAATATCCTCCAA+GGG + chr5.1:6977758-6977777 MS.gene059683:intron 25.0%
! TGCAATGAATAATTTAACCT+TGG - chr5.1:6974394-6974413 None:intergenic 25.0%
! TTAATAATACTTACGAGAGT+GGG - chr5.1:6974005-6974024 None:intergenic 25.0%
! TTATATTTGTTTGTTTCCCT+TGG - chr5.1:6977777-6977796 None:intergenic 25.0%
! TTATGCTTAGTAGAATGAAA+TGG - chr5.1:6973927-6973946 None:intergenic 25.0%
! TTCTATTTGTGTGTTATACA+AGG - chr5.1:6975594-6975613 None:intergenic 25.0%
!! AACCAATTTTACTCAAAGAA+GGG + chr5.1:6974517-6974536 MS.gene059683:CDS 25.0%
!! AATTGTGTACATCAATTTTC+CGG + chr5.1:6976953-6976972 MS.gene059683:intron 25.0%
!! TAATTTTATATCTTTTCCGC+AGG + chr5.1:6975304-6975323 MS.gene059683:intron 25.0%
!! TTCTTATTTCACTATTACAG+AGG + chr5.1:6978789-6978808 MS.gene059683:intron 25.0%
!!! AATCCCGTTTTTAATAAAAC+AGG + chr5.1:6977396-6977415 MS.gene059683:intron 25.0%
!!! CATTTTTAGTTTCTTTATCG+AGG - chr5.1:6975543-6975562 None:intergenic 25.0%
!!! TATTTTGGCACATTTGATTA+GGG + chr5.1:6976603-6976622 MS.gene059683:intron 25.0%
!!! TCCTCCTGTTTTATTAAAAA+CGG - chr5.1:6977403-6977422 None:intergenic 25.0%
!!! TTAACTCATTATTTCTGAGT+CGG + chr5.1:6974021-6974040 MS.gene059683:intron 25.0%
!!! TTATTTTGGCACATTTGATT+AGG + chr5.1:6976602-6976621 MS.gene059683:intron 25.0%
AAACCACACTTATAATGAGA+TGG - chr5.1:6976711-6976730 None:intergenic 30.0%
AAATCATTTGAGCTTCCATA+AGG + chr5.1:6978236-6978255 MS.gene059683:CDS 30.0%
AAATGTGAAGTTATTGATGG+CGG + chr5.1:6974863-6974882 MS.gene059683:CDS 30.0%
AAATGTTAAATCAGCCATAG+CGG - chr5.1:6976256-6976275 None:intergenic 30.0%
AACTACATATGTATGTCACA+AGG - chr5.1:6978284-6978303 None:intergenic 30.0%
AACTTCAACTAAGCAAAGTT+TGG + chr5.1:6977812-6977831 MS.gene059683:intron 30.0%
AATAAAGGAACTTCTTCAAC+AGG - chr5.1:6976477-6976496 None:intergenic 30.0%
ACTTCAACTAAGCAAAGTTT+GGG + chr5.1:6977813-6977832 MS.gene059683:intron 30.0%
AGAATCACTTCTTAAAACAC+TGG - chr5.1:6978211-6978230 None:intergenic 30.0%
AGAATGAAATGGAAGTTGTT+GGG - chr5.1:6973916-6973935 None:intergenic 30.0%
AGAATTATACCAGTTATGGA+AGG - chr5.1:6974941-6974960 None:intergenic 30.0%
AGTAGCATAAAATTGTCAAC+TGG - chr5.1:6975042-6975061 None:intergenic 30.0%
AGTTCGTGTAAAACTTTACA+TGG - chr5.1:6977228-6977247 None:intergenic 30.0%
ATCTGTTAAAGTTATGCATG+CGG + chr5.1:6978167-6978186 MS.gene059683:CDS 30.0%
ATTATCAATCAAATCTACGG+TGG - chr5.1:6978353-6978372 None:intergenic 30.0%
ATTCAGACAAATTCACGTTT+CGG - chr5.1:6977854-6977873 None:intergenic 30.0%
CAACAGAATTATACCAGTTA+TGG - chr5.1:6974945-6974964 None:intergenic 30.0%
CATTCCTCCTAAAATAACAA+TGG - chr5.1:6974804-6974823 None:intergenic 30.0%
CTACTAAGCATAAGCATAAT+AGG + chr5.1:6973934-6973953 MS.gene059683:CDS 30.0%
CTATATACATGTCACCAAAA+TGG - chr5.1:6976541-6976560 None:intergenic 30.0%
CTCATTATAAGTGTGGTTTA+AGG + chr5.1:6976712-6976731 MS.gene059683:intron 30.0%
GAAAGCAAATATTGTTGAGT+AGG - chr5.1:6978534-6978553 None:intergenic 30.0%
GGATTAACAACTATTCTTCT+TGG + chr5.1:6974460-6974479 MS.gene059683:intron 30.0%
GTGATATAAAATATCCTCCA+AGG + chr5.1:6977757-6977776 MS.gene059683:intron 30.0%
GTTAATAATACTTACGAGAG+TGG - chr5.1:6974006-6974025 None:intergenic 30.0%
TAAACAAATAGTAGAGGAGA+AGG - chr5.1:6974099-6974118 None:intergenic 30.0%
TAAGTCAAAGACAAAAGACT+TGG + chr5.1:6974838-6974857 MS.gene059683:CDS 30.0%
TAGAACTCAAAAGATGAAAC+TGG - chr5.1:6976409-6976428 None:intergenic 30.0%
TAGAATGAAATGGAAGTTGT+TGG - chr5.1:6973917-6973936 None:intergenic 30.0%
TAGAGTGGTTTATGAGTTAA+AGG + chr5.1:6975161-6975180 MS.gene059683:CDS 30.0%
TAGAGTTTCAATGTGATATG+TGG + chr5.1:6977199-6977218 MS.gene059683:intron 30.0%
TATGTTACTCTTGTTCAAAG+CGG + chr5.1:6979033-6979052 MS.gene059683:CDS 30.0%
TATTTCACTATTACAGAGGA+AGG + chr5.1:6978793-6978812 MS.gene059683:intron 30.0%
TCTCCTCTACTATTTGTTTA+GGG + chr5.1:6974099-6974118 MS.gene059683:intron 30.0%
TCTTCCATTATTCAACTTGA+TGG - chr5.1:6975915-6975934 None:intergenic 30.0%
TCTTTGAGTAAAATTGGTTG+TGG - chr5.1:6974516-6974535 None:intergenic 30.0%
TGTCTGTGTTTCTCTAATAT+TGG + chr5.1:6977127-6977146 MS.gene059683:intron 30.0%
TGTGTTTATCTTCACAGAAA+AGG + chr5.1:6975068-6975087 MS.gene059683:intron 30.0%
TTATGGAAGCTCAAATGATT+TGG - chr5.1:6978237-6978256 None:intergenic 30.0%
TTCCTCCTAAAATAACAATG+GGG - chr5.1:6974802-6974821 None:intergenic 30.0%
TTCTCCTCTACTATTTGTTT+AGG + chr5.1:6974098-6974117 MS.gene059683:intron 30.0%
TTTCCCTAAACAAATAGTAG+AGG - chr5.1:6974105-6974124 None:intergenic 30.0%
TTTCTGAACTAAGTACCTTA+TGG - chr5.1:6978254-6978273 None:intergenic 30.0%
! AAAGTTTTACACGAACTAGA+TGG + chr5.1:6977231-6977250 MS.gene059683:intron 30.0%
! ACCAATTTTACTCAAAGAAG+GGG + chr5.1:6974518-6974537 MS.gene059683:CDS 30.0%
! ATATTTGTTGCCACAATAAC+TGG - chr5.1:6977457-6977476 None:intergenic 30.0%
! ATGCGTGTTTCTTATTTCTT+GGG + chr5.1:6975261-6975280 MS.gene059683:intron 30.0%
! CAACCAATTTTACTCAAAGA+AGG + chr5.1:6974516-6974535 MS.gene059683:CDS 30.0%
! CTATTCTTTTGAGCCATTAT+AGG + chr5.1:6978507-6978526 MS.gene059683:CDS 30.0%
! GAAACAAACAGTACTTGTTA+TGG + chr5.1:6978701-6978720 MS.gene059683:intron 30.0%
! GAAAGTATGGAATGAAGATT+TGG - chr5.1:6975382-6975401 None:intergenic 30.0%
! TATGCGTGTTTCTTATTTCT+TGG + chr5.1:6975260-6975279 MS.gene059683:intron 30.0%
! TATGGAATGAAGATTTGGTA+TGG - chr5.1:6975377-6975396 None:intergenic 30.0%
! TGTTTGTTTCTCCTAAACAA+CGG - chr5.1:6978691-6978710 None:intergenic 30.0%
!! ACATGATATGTATGCCATTT+TGG + chr5.1:6976524-6976543 MS.gene059683:intron 30.0%
!! CATTTTGGTGACATGTATAT+AGG + chr5.1:6976539-6976558 MS.gene059683:intron 30.0%
!! CCTCCTGTTTTATTAAAAAC+GGG - chr5.1:6977402-6977421 None:intergenic 30.0%
!! GGCATTTTGATATTGTAAGA+AGG - chr5.1:6975994-6976013 None:intergenic 30.0%
!! TCAAGTTGAATAATGGAAGA+TGG + chr5.1:6975915-6975934 MS.gene059683:intron 30.0%
!! TCATCCATCAAGTTGAATAA+TGG + chr5.1:6975908-6975927 MS.gene059683:intron 30.0%
!!! ATGCATCTTCCTTTTTTTGA+TGG + chr5.1:6978942-6978961 MS.gene059683:intron 30.0%
!!! CTTTTGAGTTCTACTTTTGT+AGG + chr5.1:6976416-6976435 MS.gene059683:intron 30.0%
AAAAGGAAGATGCATGCAAT+TGG - chr5.1:6978937-6978956 None:intergenic 35.0%
AACAACTATTCTTCTTGGCA+GGG + chr5.1:6974465-6974484 MS.gene059683:intron 35.0%
AATGCAAAAGCCAGTTATTG+TGG + chr5.1:6977444-6977463 MS.gene059683:CDS 35.0%
AATGCACAACACTAAGACAA+AGG - chr5.1:6975752-6975771 None:intergenic 35.0%
AATGTTAAATCAGCCATAGC+GGG - chr5.1:6976255-6976274 None:intergenic 35.0%
ACAAACTCTTCTTCGCTTTA+TGG + chr5.1:6974135-6974154 MS.gene059683:CDS 35.0%
ACAGAGAATGTGGTTATCTT+TGG - chr5.1:6976115-6976134 None:intergenic 35.0%
AGACATAATTGTTGCATGGA+AGG - chr5.1:6978438-6978457 None:intergenic 35.0%
AGTAAAGGTCATTTAGACGA+GGG + chr5.1:6979006-6979025 MS.gene059683:CDS 35.0%
ATCGATTGCAGATAGTCAAT+AGG + chr5.1:6974977-6974996 MS.gene059683:intron 35.0%
ATGCACAACACTAAGACAAA+GGG - chr5.1:6975751-6975770 None:intergenic 35.0%
ATTATTGTGTTCACCAGAAC+TGG + chr5.1:6978476-6978495 MS.gene059683:CDS 35.0%
ATTGCAATTGCAGTAAGACA+AGG + chr5.1:6977529-6977548 MS.gene059683:CDS 35.0%
CAGAGAATGTGGTTATCTTT+GGG - chr5.1:6976114-6976133 None:intergenic 35.0%
CATAACTCGATTGCATGAAA+TGG - chr5.1:6975846-6975865 None:intergenic 35.0%
CATCAGATTACCTGCAATAA+AGG - chr5.1:6976492-6976511 None:intergenic 35.0%
CATTTCATGCAATCGAGTTA+TGG + chr5.1:6975844-6975863 MS.gene059683:intron 35.0%
CGAGTTATGGTGAAAATTGT+CGG + chr5.1:6975857-6975876 MS.gene059683:intron 35.0%
CGGGATAAACAAGCATAAAA+AGG - chr5.1:6975226-6975245 None:intergenic 35.0%
CTATGCTGTATCATTTGTCA+AGG + chr5.1:6975134-6975153 MS.gene059683:CDS 35.0%
CTCCAAAATATAGACTCTGA+GGG - chr5.1:6976324-6976343 None:intergenic 35.0%
CTCGTTTGAATATGTCACAT+GGG + chr5.1:6974280-6974299 MS.gene059683:CDS 35.0%
CTGCAGACGTTATTAAGATT+TGG + chr5.1:6976029-6976048 MS.gene059683:intron 35.0%
GACTGGGAAGATATCAAATT+CGG + chr5.1:6975090-6975109 MS.gene059683:CDS 35.0%
GTTCTGGTGAACACAATAAT+AGG - chr5.1:6978476-6978495 None:intergenic 35.0%
TAACAACTATTCTTCTTGGC+AGG + chr5.1:6974464-6974483 MS.gene059683:intron 35.0%
TACATATGTATGTCACAAGG+AGG - chr5.1:6978281-6978300 None:intergenic 35.0%
TATCAAAATGCCAGCTTACT+AGG + chr5.1:6976002-6976021 MS.gene059683:intron 35.0%
TATCATACACACTACTTGCA+TGG + chr5.1:6975884-6975903 MS.gene059683:intron 35.0%
TATCTTCACAGAAAAGGACT+GGG + chr5.1:6975074-6975093 MS.gene059683:intron 35.0%
TATTTGTTTGTTTCCCTTGG+AGG - chr5.1:6977774-6977793 None:intergenic 35.0%
TCACAGCATGGTGTATTATA+TGG + chr5.1:6975788-6975807 MS.gene059683:intron 35.0%
TCCCCTTCTTTGAGTAAAAT+TGG - chr5.1:6974522-6974541 None:intergenic 35.0%
TCGTTTGAATATGTCACATG+GGG + chr5.1:6974281-6974300 MS.gene059683:CDS 35.0%
TCTCCAAAATATAGACTCTG+AGG - chr5.1:6976325-6976344 None:intergenic 35.0%
TGAAGAAGTTCCTTTATTGC+AGG + chr5.1:6976479-6976498 MS.gene059683:CDS 35.0%
TTATCGAGGACTATGTTCAT+AGG - chr5.1:6975529-6975548 None:intergenic 35.0%
TTATCTTCACAGAAAAGGAC+TGG + chr5.1:6975073-6975092 MS.gene059683:intron 35.0%
TTTGGGTATCTGTATGAGTA+AGG - chr5.1:6976097-6976116 None:intergenic 35.0%
! AAGCATTGTTCTCCAAAACA+AGG - chr5.1:6977951-6977970 None:intergenic 35.0%
! AATATAGACTCTGAGGGTAT+TGG - chr5.1:6976318-6976337 None:intergenic 35.0%
! ACATTTTTGACAGAGCCATA+TGG + chr5.1:6978400-6978419 MS.gene059683:intron 35.0%
! AGTTGAATAATGGAAGATGG+TGG + chr5.1:6975918-6975937 MS.gene059683:intron 35.0%
! ATGGTGGAACTCTTACATAT+AGG + chr5.1:6977250-6977269 MS.gene059683:intron 35.0%
! CATTTTTGACAGAGCCATAT+GGG + chr5.1:6978401-6978420 MS.gene059683:intron 35.0%
! GCAATTTTCAAATGATGCTG+AGG + chr5.1:6978863-6978882 MS.gene059683:CDS 35.0%
! GCTATGGCTGATTTAACATT+TGG + chr5.1:6976255-6976274 MS.gene059683:intron 35.0%
! GTTGAATAATGGAAGATGGT+GGG + chr5.1:6975919-6975938 MS.gene059683:intron 35.0%
! TACCCTCAGAGTCTATATTT+TGG + chr5.1:6976319-6976338 MS.gene059683:intron 35.0%
! TAGTTTTCTGATGAGAAGTG+TGG - chr5.1:6974308-6974327 None:intergenic 35.0%
! TATTAGATTTTCCCAGTGAC+TGG - chr5.1:6976640-6976659 None:intergenic 35.0%
! TCAGCTGACGTATATTTTTC+TGG - chr5.1:6978636-6978655 None:intergenic 35.0%
! TGATTTTGTCAATGATGTCG+AGG + chr5.1:6974605-6974624 MS.gene059683:CDS 35.0%
! TGCGTGTTTCTTATTTCTTG+GGG + chr5.1:6975262-6975281 MS.gene059683:intron 35.0%
! TTCACTGATATTTAGGACGT+AGG + chr5.1:6977342-6977361 MS.gene059683:intron 35.0%
!! AGTTCTACTTTTGTAGGCAA+TGG + chr5.1:6976422-6976441 MS.gene059683:intron 35.0%
!! CCCGTTTTTAATAAAACAGG+AGG + chr5.1:6977399-6977418 MS.gene059683:intron 35.0%
!! GAGTTTGATGTAAGTTGATC+TGG + chr5.1:6975621-6975640 MS.gene059683:intron 35.0%
!! TTTTGGAGAACAATGCTTTC+AGG + chr5.1:6977953-6977972 MS.gene059683:intron 35.0%
!!! AGTTATTTTTCGTCCTGCTA+TGG + chr5.1:6978003-6978022 MS.gene059683:intron 35.0%
!!! TCTCTCCCCATTGTTATTTT+AGG + chr5.1:6974794-6974813 MS.gene059683:intron 35.0%
AAATGGAAGTTGTTGGGAGA+TGG - chr5.1:6973910-6973929 None:intergenic 40.0%
AAGTTGTTGGGAGATGGAAT+TGG - chr5.1:6973904-6973923 None:intergenic 40.0%
AGAGGTCTTACCTTTCATAG+AGG + chr5.1:6977067-6977086 MS.gene059683:intron 40.0%
AGATTTGAAGAGAGAAGACG+TGG - chr5.1:6973853-6973872 None:intergenic 40.0%
AGCAAGTCTCAGATTCTTAC+GGG + chr5.1:6975670-6975689 MS.gene059683:intron 40.0%
ATATGTTCTGCTTCACAGCA+TGG + chr5.1:6975776-6975795 MS.gene059683:intron 40.0%
ATGGCTCAAAAGAATAGCCA+TGG - chr5.1:6978504-6978523 None:intergenic 40.0%
ATTTGGAAACTCGCTCAAAC+TGG + chr5.1:6974246-6974265 MS.gene059683:CDS 40.0%
ATTTGTCAAGGATGCTAGAG+TGG + chr5.1:6975146-6975165 MS.gene059683:CDS 40.0%
CATACTTTCAGCTTCAGATG+GGG + chr5.1:6975393-6975412 MS.gene059683:CDS 40.0%
CCACACTTATAATGAGATGG+AGG - chr5.1:6976708-6976727 None:intergenic 40.0%
CCATACTTTCAGCTTCAGAT+GGG + chr5.1:6975392-6975411 MS.gene059683:CDS 40.0%
CCTCCATCTCATTATAAGTG+TGG + chr5.1:6976705-6976724 MS.gene059683:intron 40.0%
CTTCTTATGCTGCAGAGTAA+AGG + chr5.1:6978991-6979010 MS.gene059683:intron 40.0%
GAAAGCAGTGAACTAAACGA+CGG + chr5.1:6977031-6977050 MS.gene059683:intron 40.0%
GACACTCATAATGAGACTGA+TGG + chr5.1:6976910-6976929 MS.gene059683:intron 40.0%
GAGATTCGGATAATCGAGTT+AGG - chr5.1:6974769-6974788 None:intergenic 40.0%
GAGCAAGTCTCAGATTCTTA+CGG + chr5.1:6975669-6975688 MS.gene059683:intron 40.0%
GAGGTCTTACCTTTCATAGA+GGG + chr5.1:6977068-6977087 MS.gene059683:intron 40.0%
GAGTAAAGGTCATTTAGACG+AGG + chr5.1:6979005-6979024 MS.gene059683:intron 40.0%
GATTTGAAGAGAGAAGACGT+GGG - chr5.1:6973852-6973871 None:intergenic 40.0%
GCTCGTTTGAATATGTCACA+TGG + chr5.1:6974279-6974298 MS.gene059683:CDS 40.0%
GGATTGAGCTACATAGAACA+TGG - chr5.1:6977381-6977400 None:intergenic 40.0%
GGCAGGTTCAAACTAATTCA+GGG - chr5.1:6976285-6976304 None:intergenic 40.0%
GTAAAGGTCATTTAGACGAG+GGG + chr5.1:6979007-6979026 MS.gene059683:CDS 40.0%
GTTGCACTAAACGTTAACGA+TGG + chr5.1:6977004-6977023 MS.gene059683:intron 40.0%
GTTTAGTGCAACAGCTATAC+AGG - chr5.1:6976996-6977015 None:intergenic 40.0%
TAAACAACGGTGAGGACAAA+AGG - chr5.1:6978678-6978697 None:intergenic 40.0%
TAAGACCTCTCAGTTGAGAA+AGG - chr5.1:6977057-6977076 None:intergenic 40.0%
TAGAGCTCTCAAACTACTGT+TGG + chr5.1:6978896-6978915 MS.gene059683:CDS 40.0%
TATATCAGCATTGTGTCCTG+CGG - chr5.1:6975323-6975342 None:intergenic 40.0%
TATTCATCCCACACCAACTA+GGG + chr5.1:6977492-6977511 MS.gene059683:CDS 40.0%
TCCATACTTTCAGCTTCAGA+TGG + chr5.1:6975391-6975410 MS.gene059683:CDS 40.0%
TCTATTACGCCCTCTATGAA+AGG - chr5.1:6977080-6977099 None:intergenic 40.0%
TGTTAAAGTTATGCATGCGG+TGG + chr5.1:6978170-6978189 MS.gene059683:CDS 40.0%
TTATTCATCCCACACCAACT+AGG + chr5.1:6977491-6977510 MS.gene059683:CDS 40.0%
TTGTTGAGTAGGGCCTATAA+TGG - chr5.1:6978523-6978542 None:intergenic 40.0%
TTTAGGAGGAATGATGTCTC+TGG + chr5.1:6974811-6974830 MS.gene059683:intron 40.0%
TTTATCCCGTTGTGTGAATC+TGG + chr5.1:6975237-6975256 MS.gene059683:intron 40.0%
TTTGTCAATGATGTCGAGGT+TGG + chr5.1:6974609-6974628 MS.gene059683:CDS 40.0%
! ATGGCGGAGAATTGAAATCT+AGG + chr5.1:6974879-6974898 MS.gene059683:CDS 40.0%
! ATTAGTTTGAACCTGCCGAT+AGG + chr5.1:6976288-6976307 MS.gene059683:intron 40.0%
! GTTTTACACGAACTAGATGG+TGG + chr5.1:6977234-6977253 MS.gene059683:intron 40.0%
! TAGTTTGAGAGCTCTAGCAA+AGG - chr5.1:6978892-6978911 None:intergenic 40.0%
! TTTTGTCCTCACCGTTGTTT+AGG + chr5.1:6978677-6978696 MS.gene059683:intron 40.0%
!! CTGCAGACTTAACCTTGTTT+TGG + chr5.1:6977936-6977955 MS.gene059683:intron 40.0%
!! GAAAGTGTGTTTGCTATCCT+CGG + chr5.1:6977590-6977609 MS.gene059683:intron 40.0%
!! GAGGGTATTGGAAAACCTAT+CGG - chr5.1:6976306-6976325 None:intergenic 40.0%
!! GTTTGTTTCTGCACTATTGC+TGG + chr5.1:6975954-6975973 MS.gene059683:intron 40.0%
!! TTAGGTTTTGTAGCCATAGC+AGG - chr5.1:6978019-6978038 None:intergenic 40.0%
!!! AATGGAAGATGGTGGGTTTT+TGG + chr5.1:6975926-6975945 MS.gene059683:intron 40.0%
!!! CTCCCCATTGTTATTTTAGG+AGG + chr5.1:6974797-6974816 MS.gene059683:intron 40.0%
!!! TAACTGGCTTTTGCATTCTG+TGG - chr5.1:6977441-6977460 None:intergenic 40.0%
AATAGCCATGGATCCAGTTC+TGG - chr5.1:6978492-6978511 None:intergenic 45.0%
ACAAAGATCGTGTGCACGAT+TGG + chr5.1:6974198-6974217 MS.gene059683:CDS 45.0%
ACAGAGGAAGGATTAAGCAG+AGG + chr5.1:6978805-6978824 MS.gene059683:intron 45.0%
ACATCCCCACTTCTAACTTC+AGG - chr5.1:6974492-6974511 None:intergenic 45.0%
ACTGGTTGGAGGAGGTTATT+TGG - chr5.1:6973980-6973999 None:intergenic 45.0%
AGGAAGGATTAAGCAGAGGT+TGG + chr5.1:6978809-6978828 MS.gene059683:CDS 45.0%
AGGCAAACATTGCTCCCATA+TGG - chr5.1:6978418-6978437 None:intergenic 45.0%
AGGCGTCATTTGAATGTTCG+TGG + chr5.1:6974899-6974918 MS.gene059683:CDS 45.0%
AGGGTCCTGAAGTTAGAAGT+GGG + chr5.1:6974484-6974503 MS.gene059683:intron 45.0%
ATACAGTAGCTCCAGTCACT+GGG + chr5.1:6976626-6976645 MS.gene059683:intron 45.0%
ATGTCACGTGAGCTAGTAGA+TGG - chr5.1:6974225-6974244 None:intergenic 45.0%
CGCATACCAGATTCACACAA+CGG - chr5.1:6975246-6975265 None:intergenic 45.0%
CGCTCAAACTGGAATGAATG+TGG + chr5.1:6974257-6974276 MS.gene059683:CDS 45.0%
CGGCAGGTTCAAACTAATTC+AGG - chr5.1:6976286-6976305 None:intergenic 45.0%
CTAGCTCACGTGACATGATT+TGG + chr5.1:6974229-6974248 MS.gene059683:CDS 45.0%
CTGCAGTATACCTAGTAAGC+TGG - chr5.1:6976015-6976034 None:intergenic 45.0%
CTGGTTGGAGGAGGTTATTT+GGG - chr5.1:6973979-6973998 None:intergenic 45.0%
CTTCTTCGCTTTATGGTACG+TGG + chr5.1:6974142-6974161 MS.gene059683:CDS 45.0%
GATAACCACATTCTCTGTGC+AGG + chr5.1:6976117-6976136 MS.gene059683:intron 45.0%
GCAAACACACTTTCCATGTG+CGG - chr5.1:6977584-6977603 None:intergenic 45.0%
GCAAGTCTCAGATTCTTACG+GGG + chr5.1:6975671-6975690 MS.gene059683:intron 45.0%
GCATACCAGATTCACACAAC+GGG - chr5.1:6975245-6975264 None:intergenic 45.0%
GCGAACTTGAATGTGGTGAA+TGG - chr5.1:6979085-6979104 None:intergenic 45.0%
GGAAGGATTAAGCAGAGGTT+GGG + chr5.1:6978810-6978829 MS.gene059683:CDS 45.0%
GGGGAGAGAATCAAGAGATT+CGG - chr5.1:6974783-6974802 None:intergenic 45.0%
GTATTGGAAAACCTATCGGC+AGG - chr5.1:6976302-6976321 None:intergenic 45.0%
GTTTCTCCTAAACAACGGTG+AGG - chr5.1:6978686-6978705 None:intergenic 45.0%
TGGTTGGAGGAGGTTATTTG+GGG - chr5.1:6973978-6973997 None:intergenic 45.0%
TTCCATCATGCTTGACACCA+AGG + chr5.1:6974374-6974393 MS.gene059683:CDS 45.0%
TTGTTGGGAGATGGAATTGG+AGG - chr5.1:6973901-6973920 None:intergenic 45.0%
TTTATGGTACGTGGCGAACA+GGG + chr5.1:6974151-6974170 MS.gene059683:CDS 45.0%
! ATTCAAGTTCGCGAGGTTCA+TGG + chr5.1:6979093-6979112 MS.gene059683:CDS 45.0%
! CCCATCTGAAGCTGAAAGTA+TGG - chr5.1:6975395-6975414 None:intergenic 45.0%
!! AACCTTGGTGTCAAGCATGA+TGG - chr5.1:6974379-6974398 None:intergenic 45.0%
AAAGCGGAGCACAACCAATC+TGG + chr5.1:6979049-6979068 MS.gene059683:CDS 50.0%
AGCTATACAGGCAGCAGAGA+AGG - chr5.1:6976984-6977003 None:intergenic 50.0%
CAAAGCCTGCACAGAGAATG+TGG - chr5.1:6976125-6976144 None:intergenic 50.0%
CAACAGGAAGTTCAGCTCCA+AGG - chr5.1:6976461-6976480 None:intergenic 50.0%
CAGGGTCCTGAAGTTAGAAG+TGG + chr5.1:6974483-6974502 MS.gene059683:intron 50.0%
CTATACAGGCAGCAGAGAAG+GGG - chr5.1:6976982-6977001 None:intergenic 50.0%
CTTTATGGTACGTGGCGAAC+AGG + chr5.1:6974150-6974169 MS.gene059683:CDS 50.0%
CTTTCAGGAGAAACCGCACA+TGG + chr5.1:6977568-6977587 MS.gene059683:CDS 50.0%
GAACCTCGCGAACTTGAATG+TGG - chr5.1:6979092-6979111 None:intergenic 50.0%
GATACAGTAGCTCCAGTCAC+TGG + chr5.1:6976625-6976644 MS.gene059683:intron 50.0%
GCAACGCTTCCTTCCATAAC+TGG + chr5.1:6974929-6974948 MS.gene059683:CDS 50.0%
GCTATACAGGCAGCAGAGAA+GGG - chr5.1:6976983-6977002 None:intergenic 50.0%
GCTGATGCTGTCATGCTTTC+AGG + chr5.1:6977553-6977572 MS.gene059683:CDS 50.0%
GGGTCCTGAAGTTAGAAGTG+GGG + chr5.1:6974485-6974504 MS.gene059683:intron 50.0%
GGTTGGAGGAGGTTATTTGG+GGG - chr5.1:6973977-6973996 None:intergenic 50.0%
GTTCACCAGAACTGGATCCA+TGG + chr5.1:6978484-6978503 MS.gene059683:CDS 50.0%
TACTTACGAGAGTGGGAGAC+TGG - chr5.1:6973998-6974017 None:intergenic 50.0%
TCGCTGAAAACTTCCCGCTA+TGG + chr5.1:6976239-6976258 MS.gene059683:intron 50.0%
TGTAGGCAATGGTTGCTCGT+GGG + chr5.1:6976433-6976452 MS.gene059683:intron 50.0%
TTATGGTACGTGGCGAACAG+GGG + chr5.1:6974152-6974171 MS.gene059683:CDS 50.0%
TTGTAGGCAATGGTTGCTCG+TGG + chr5.1:6976432-6976451 MS.gene059683:intron 50.0%
! TCACCACATTCAAGTTCGCG+AGG + chr5.1:6979086-6979105 MS.gene059683:CDS 50.0%
! TTATGCATGCGGTGGCTCTA+AGG + chr5.1:6978178-6978197 MS.gene059683:CDS 50.0%
!! AGTGTGTTTGCTATCCTCGG+TGG + chr5.1:6977593-6977612 MS.gene059683:intron 50.0%
AAAAGGAACCATGGCCACCG+AGG - chr5.1:6977610-6977629 None:intergenic 55.0%
ACCGATCACGACACTGACAC+CGG + chr5.1:6974439-6974458 MS.gene059683:intron 55.0%
AGCACAACCAATCTGGCGTG+CGG + chr5.1:6979056-6979075 MS.gene059683:CDS 55.0%
ATGGATTCCGCACGCCAGAT+TGG - chr5.1:6979066-6979085 None:intergenic 55.0%
ATTTGGGGGACGCGTTTGGA+TGG - chr5.1:6973963-6973982 None:intergenic 55.0%
GACGGCCTTTCTCAACTGAG+AGG + chr5.1:6977049-6977068 MS.gene059683:intron 55.0%
GGAGACGTTCTTCTCGTCGA+TGG + chr5.1:6974630-6974649 MS.gene059683:CDS 55.0%
GGTTATTTGGGGGACGCGTT+TGG - chr5.1:6973967-6973986 None:intergenic 55.0%
GTAGGCAATGGTTGCTCGTG+GGG + chr5.1:6976434-6976453 MS.gene059683:intron 55.0%
TACGAGAGTGGGAGACTGGT+TGG - chr5.1:6973994-6974013 None:intergenic 55.0%
TCATCCCACACCAACTAGGG+CGG + chr5.1:6977495-6977514 MS.gene059683:CDS 55.0%
TGCTGCAGACTAGAGCGTAG+AGG + chr5.1:6978322-6978341 MS.gene059683:intron 55.0%
! ACTTCCGCCCTAGTTGGTGT+GGG - chr5.1:6977502-6977521 None:intergenic 55.0%
! TCCGGTGTCAGTGTCGTGAT+CGG - chr5.1:6974443-6974462 None:intergenic 55.0%
! TCTGAGACTTCCGCCCTAGT+TGG - chr5.1:6977508-6977527 None:intergenic 55.0%
! TTTGCTATCCTCGGTGGCCA+TGG + chr5.1:6977599-6977618 MS.gene059683:intron 55.0%
ATGGTTGCTCGTGGGGACCT+TGG + chr5.1:6976441-6976460 MS.gene059683:CDS 60.0%
GGCAGCAGAGAAGGGGATTC+CGG - chr5.1:6976975-6976994 None:intergenic 60.0%
! AGTGGGAGACTGGTTGGAGG+AGG - chr5.1:6973988-6974007 None:intergenic 60.0%
! GACTTCCGCCCTAGTTGGTG+TGG - chr5.1:6977503-6977522 None:intergenic 60.0%
! GAGAGTGGGAGACTGGTTGG+AGG - chr5.1:6973991-6974010 None:intergenic 60.0%
GGTACGTGGCGAACAGGGGA+AGG + chr5.1:6974156-6974175 MS.gene059683:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 6973825 6979119 6973825 ID=MS.gene059683
chr5.1 mRNA 6973825 6979119 6973825 ID=MS.gene059683.t1;Parent=MS.gene059683
chr5.1 exon 6973825 6974010 6973825 ID=MS.gene059683.t1.exon1;Parent=MS.gene059683.t1
chr5.1 CDS 6973825 6974010 6973825 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6974120 6974395 6974120 ID=MS.gene059683.t1.exon2;Parent=MS.gene059683.t1
chr5.1 CDS 6974120 6974395 6974120 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6974486 6974651 6974486 ID=MS.gene059683.t1.exon3;Parent=MS.gene059683.t1
chr5.1 CDS 6974486 6974651 6974486 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6974816 6974950 6974816 ID=MS.gene059683.t1.exon4;Parent=MS.gene059683.t1
chr5.1 CDS 6974816 6974950 6974816 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6975085 6975195 6975085 ID=MS.gene059683.t1.exon5;Parent=MS.gene059683.t1
chr5.1 CDS 6975085 6975195 6975085 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6975326 6975414 6975326 ID=MS.gene059683.t1.exon6;Parent=MS.gene059683.t1
chr5.1 CDS 6975326 6975414 6975326 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6976438 6976500 6976438 ID=MS.gene059683.t1.exon7;Parent=MS.gene059683.t1
chr5.1 CDS 6976438 6976500 6976438 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6977418 6977593 6977418 ID=MS.gene059683.t1.exon8;Parent=MS.gene059683.t1
chr5.1 CDS 6977418 6977593 6977418 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6978155 6978257 6978155 ID=MS.gene059683.t1.exon9;Parent=MS.gene059683.t1
chr5.1 CDS 6978155 6978257 6978155 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6978413 6978561 6978413 ID=MS.gene059683.t1.exon10;Parent=MS.gene059683.t1
chr5.1 CDS 6978413 6978561 6978413 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6978809 6978917 6978809 ID=MS.gene059683.t1.exon11;Parent=MS.gene059683.t1
chr5.1 CDS 6978809 6978917 6978809 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
chr5.1 exon 6979006 6979119 6979006 ID=MS.gene059683.t1.exon12;Parent=MS.gene059683.t1
chr5.1 CDS 6979006 6979119 6979006 ID=cds.MS.gene059683.t1;Parent=MS.gene059683.t1
Gene Sequence

>MS.gene059683

ATGACAACTATTCATCTTTCTTCTCCCACGTCTTCTCTCTTCAAATCTAATAATAATCTCAAAAATCTCTTTTCCTCCAATTCCATCTCCCAACAACTTCCATTTCATTCTACTAAGCATAAGCATAATAGGCATCCATCCAAACGCGTCCCCCAAATAACCTCCTCCAACCAGTCTCCCACTCTCGTAAGTATTATTAACTCATTATTTCTGAGTCGGAGTTCGACTCATCTAAACTTATATATTTTTTCAAAAAAATGAATTCACTTCTCCTTCTCCTCTACTATTTGTTTAGGGAAATGATTACTACACAAACTCTTCTTCGCTTTATGGTACGTGGCGAACAGGGGAAGGATCAGATGAACGAACTAAAACAAAGATCGTGTGCACGATTGGTCCATCTACTAGCTCACGTGACATGATTTGGAAACTCGCTCAAACTGGAATGAATGTGGCTCGTTTGAATATGTCACATGGGGACCACACTTCTCATCAGAAAACTATTGATTTTGTTAAACAATACAATTCTCACTTTCAAGATAGAGTTATTTCCATCATGCTTGACACCAAGGTTAAATTATTCATTGCATTGCATTGCAAAATGAATTAGAGACACCGATCACGACACTGACACCGGATTAACAACTATTCTTCTTGGCAGGGTCCTGAAGTTAGAAGTGGGGATGTGCCACAACCAATTTTACTCAAAGAAGGGGAGACATTCAATTTTACTATTAAAAGAGGGATTAGTACTCAAGATACTGTTAGTGTCAATTATGATGATTTTGTCAATGATGTCGAGGTTGGAGACGTTCTTCTCGTCGATGGTGAGTGTGTGTATGCTACTCTGCTTGTATTCTGAAATTTGAAATTAACCTCCAATTTTGTGTTTATAATAATCATAATATGTAAGACGAATTTATTTATTTGTTGCATAATCACCTAACTCGATTATCCGAATCTCTTGATTCTCTCCCCATTGTTATTTTAGGAGGAATGATGTCTCTGGTTGTTAAGTCAAAGACAAAAGACTTGGTTAAATGTGAAGTTATTGATGGCGGAGAATTGAAATCTAGGCGTCATTTGAATGTTCGTGGAAAAAGTGCAACGCTTCCTTCCATAACTGGTATAATTCTGTTGTATTTGTCGTTGATCGATTGCAGATAGTCAATAGGTTTCAACTACTTGCAGATATGTACTGTTAGTATGCTAATCCAGTTGACAATTTTATGCTACTTTGAAATGTGTTTATCTTCACAGAAAAGGACTGGGAAGATATCAAATTCGGTGTAGACAATGAAGTAGACTTCTATGCTGTATCATTTGTCAAGGATGCTAGAGTGGTTTATGAGTTAAAGGACTACCTCAAAAGTAATTATGTTTTTGCTATCTAATTTTCCTTTTTATGCTTGTTTATCCCGTTGTGTGAATCTGGTATGCGTGTTTCTTATTTCTTGGGGTATTGATTCTTTTAAGAACTAATTTTATATCTTTTCCGCAGGACACAATGCTGATATACATGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCCATACTTTCAGCTTCAGATGGGGTTAGTTCCTCATTGTTCAAATTATGTATTGCAGTATACATATTTTAACACCTTTTATTAAACATATAAAAACTGGAGTTAATTTTAGCTGTTCTATACATCAGTGTGCATCCTATGAACATAGTCCTCGATAAAGAAACTAAAAATGGAACATTTCAAGTTAAAAATATCGGTGTCCTTGTATAACACACAAATAGAAAAATATCGAGTTTGATGTAAGTTGATCTGGTAGTCAGTTTTATTTTTCAAGTTCTGAGCAAGTCTCAGATTCTTACGGGGTGTTAGAAAAACATAACTGCATCTTGAGTTGATGACTATAAACTACTATAGTTTCCCTTTGTCTTAGTGTTGTGCATTCATGATATGTTCTGCTTCACAGCATGGTGTATTATATGGACGATGATCACTATCTTTCTTAACTTAGATAGCCATTTCATGCAATCGAGTTATGGTGAAAATTGTCGGATAATATCATACACACTACTTGCATGGTTCATCCATCAAGTTGAATAATGGAAGATGGTGGGTTTTTGGTGCTTGTTTGTTTCTGCACTATTGCTGGCTGATAGTTTTTTTCCTTCTTACAATATCAAAATGCCAGCTTACTAGGTATACTGCAGACGTTATTAAGATTTGGAAAGTATATTGATTTGATTTCTACTTCAACATTCATAGTTGACCTTACTCATACAGATACCCAAAGATAACCACATTCTCTGTGCAGGCTTTGTAGTTGATTTCAATAGACTTGATAATGTATGAAACTGAATTTGTTAGAAAAATGCTAAATTAGAAAAATCTATTGCACATTTTTTAACTAAGTCTCGCTGAAAACTTCCCGCTATGGCTGATTTAACATTTGGTATACCCTGAATTAGTTTGAACCTGCCGATAGGTTTTCCAATACCCTCAGAGTCTATATTTTGGAGAAAGCCATTAGTAATCATCTAATTGTACATACCAAAGTATTATATTTATTTGTGCGTAGCATCCAGTTTCATCTTTTGAGTTCTACTTTTGTAGGCAATGGTTGCTCGTGGGGACCTTGGAGCTGAACTTCCTGTTGAAGAAGTTCCTTTATTGCAGGTAATCTGATGCTGATGCTCAGAACATGATATGTATGCCATTTTGGTGACATGTATATAGGTTCTTTCATCAGATAATCTACAAAATATGTTTGATAATCATTATTTTGGCACATTTGATTAGGGATACAGTAGCTCCAGTCACTGGGAAAATCTAATAAAAATAGCAATTTAAGTAGATGTTCTAAATTTCACTTTGTAGTCTCCTCCATCTCATTATAAGTGTGGTTTAAGGTAATGAGTATTTCTTAAGAAAATGATTATTAATATTGATTTCTATAGTAAAATATATAGGAGTAGATGATGGACAGACTATTTATATAAATGAGGGTATTATTGAAAAAAGATAATAAATATTTGCTTTGATATTCTATGACTAAAAATTTGAGACGGAAAAATATTTCAAATATGACACTCATAATGAGACTGATGGAGTATCATATTGTTGTCTTTAATTGTGTACATCAATTTTCCGGAATCCCCTTCTCTGCTGCCTGTATAGCTGTTGCACTAAACGTTAACGATGGTCTAGAAAGCAGTGAACTAAACGACGGCCTTTCTCAACTGAGAGGTCTTACCTTTCATAGAGGGCGTAATAGAGCCTATAAAACAAAAGATTCAAATATATGTCTGTGTTTCTCTAATATTGGAACCATAAAAAATGTTTATGAAGGAATTCATTGGATATCATTGATTGTTTAGAGTTTCAATGTGATATGTGGATTCCATGTAAAGTTTTACACGAACTAGATGGTGGAACTCTTACATATAGGCTTTCAAACTTTTATTTCTGTTTCTCCGTTCTTTTAATAATTTTGCGATTTCAAGTCTGCATATATCTTTTCACTGATATTTAGGACGTAGGACTATGTTTAACTCCATGTTCTATGTAGCTCAATCCCGTTTTTAATAAAACAGGAGGACATCATTAGAAGATGCCACAGAATGCAAAAGCCAGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTATTCATCCCACACCAACTAGGGCGGAAGTCTCAGACATTGCAATTGCAGTAAGACAAGGTGCTGATGCTGTCATGCTTTCAGGAGAAACCGCACATGGAAAGTGTGTTTGCTATCCTCGGTGGCCATGGTTCCTTTTTTATTTTATCAGTTCAAACATGTTTTTAAATTTCATTTTTTCTTCTTGTAATGCAAAAGATATACTATTTAGCTCATTTTAGATAAAAAAGTGTCATTAGAGAAGAGAATGAAAGAATAACAAGAATGTGATATAAAATATCCTCCAAGGGAAACAAACAAATATAAGGATAAATAGAATGGAACTTCAACTAAGCAAAGTTTGGGAATTTCTCTGCATGTCCGAAACGTGAATTTGTCTGAATCAACCTAGACATTTTAAAAAGTAAATAAATAACAATCTTAAATGATTTTTAGTGCTTTATGACTGCAGACTTAACCTTGTTTTGGAGAACAATGCTTTCAGGAAAGAAACTTCATTCATAATAAAAATTAGTTATTTTTCGTCCTGCTATGGCTACAAAACCTAATTTGTCATCTTTTTTTAACAGAATGCGTCTGTGCTGATAAGTATGCATATATTGCATTTCTTTTCAAATATTTTTAATGTAAGAAATTTATTTTAAAAGGTTTACAACTGCTTCAGATATCCATTGAAATCTGTTAAAGTTATGCATGCGGTGGCTCTAAGGAATGAATCCAGTGTTTTAAGAAGTGATTCTTATCCAAATCATTTGAGCTTCCATAAGGTACTTAGTTCAGAAATAAGCCTCCTTGTGACATACATATGTAGTTCTGAAATTCTATTTCACATGCTGCAGACTAGAGCGTAGAGGATTTACCACCGTAGATTTGATTGATAATATCCTAAAACCTAATTAATTTGTGTTTACATTTTTGACAGAGCCATATGGGAGCAATGTTTGCCTTCCATGCAACAATTATGTCTAATACTCTGAATACTCCTATTATTGTGTTCACCAGAACTGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCCTACTCAACAATATTTGCTTTCACAAATGAGTGAGTATTAGCAGCATGTATGTTTTATGTTTTGTTTTTTAATATAGATCTTATATGCATAATGCATCTAACCAGAAAAATATACGTCAGCTGATGAAATTATGCATGCTGTACCTTTTGTCCTCACCGTTGTTTAGGAGAAACAAACAGTACTTGTTATGGCTTGATCATATTATATTATCTTGAGGTAATAGGTGCTTAAGTCAACAATCTTTTCCATCTATAACTTCTTATTTCACTATTACAGAGGAAGGATTAAGCAGAGGTTGGGACTTTATCATAGTGTTATGCCTATATACATGCAATTTTCAAATGATGCTGAGGAGACCTTTGCTAGAGCTCTCAAACTACTGTTGGTGAGTGATATCTTCACCAATTGCATGCATCTTCCTTTTTTTGATGGATATTCTCTTAAATGTTGCTGAAAGTCTTCTTATGCTGCAGAGTAAAGGTCATTTAGACGAGGGGCAATATGTTACTCTTGTTCAAAGCGGAGCACAACCAATCTGGCGTGCGGAATCCATTCACCACATTCAAGTTCGCGAGGTTCATGGATAA
Protein sequence

>MS.gene059683.t1

MTTIHLSSPTSSLFKSNNNLKNLFSSNSISQQLPFHSTKHKHNRHPSKRVPQITSSNQSPTLGNDYYTNSSSLYGTWRTGEGSDERTKTKIVCTIGPSTSSRDMIWKLAQTGMNVARLNMSHGDHTSHQKTIDFVKQYNSHFQDRVISIMLDTKGPEVRSGDVPQPILLKEGETFNFTIKRGISTQDTVSVNYDDFVNDVEVGDVLLVDGGMMSLVVKSKTKDLVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVDNEVDFYAVSFVKDARVVYELKDYLKRHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPVEEVPLLQEDIIRRCHRMQKPVIVATNMLESMIIHPTPTRAEVSDIAIAVRQGADAVMLSGETAHGKYPLKSVKVMHAVALRNESSVLRSDSYPNHLSFHKSHMGAMFAFHATIMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEGRIKQRLGLYHSVMPIYMQFSNDAEETFARALKLLLSKGHLDEGQYVTLVQSGAQPIWRAESIHHIQVREVHG