Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08483.t1 | XP_013444504.1 | 94.2 | 240 | 14 | 0 | 2 | 241 | 90 | 329 | 1.70E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08483.t1 | O74507 | 24.1 | 249 | 157 | 10 | 2 | 227 | 86 | 325 | 2.2e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08483.t1 | G7ZZ33 | 94.2 | 240 | 14 | 0 | 2 | 241 | 90 | 329 | 1.2e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050991 | MS.gene08483 | 0.815949 | 7.11E-52 | -1.69E-46 |
| MS.gene052100 | MS.gene08483 | -0.817063 | 4.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08483.t1 | MTR_8g023760 | 94.167 | 240 | 14 | 0 | 2 | 241 | 90 | 329 | 1.11e-167 | 466 |
| MS.gene08483.t1 | MTR_7g117475 | 68.548 | 248 | 61 | 4 | 2 | 241 | 76 | 314 | 4.20e-121 | 347 |
| MS.gene08483.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 49 | 231 | 87 | 272 | 2.61e-12 | 65.5 |
| MS.gene08483.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 49 | 231 | 118 | 303 | 3.62e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08483.t1 | AT2G46890 | 70.833 | 240 | 70 | 0 | 2 | 241 | 83 | 322 | 6.01e-130 | 370 |
| MS.gene08483.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 22 | 226 | 61 | 256 | 1.09e-13 | 69.3 |
| MS.gene08483.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 22 | 226 | 61 | 256 | 1.24e-13 | 69.3 |
| MS.gene08483.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 22 | 226 | 61 | 256 | 1.43e-11 | 63.2 |
| MS.gene08483.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 22 | 226 | 61 | 256 | 1.74e-11 | 63.2 |
| MS.gene08483.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 22 | 226 | 61 | 256 | 1.83e-11 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8.2:-72205630 | MS.gene08483:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.284159 | 8.2:-72205871 | MS.gene08483:CDS |
| ACTGAGATGGGTCAACAATA+TGG | 0.318813 | 8.2:-72207483 | MS.gene08483:CDS |
| TTACTATGCAACACACTCTT+TGG | 0.320860 | 8.2:-72207631 | MS.gene08483:CDS |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8.2:-72205673 | MS.gene08483:CDS |
| GTGTCAAGTACAGGGATTAC+AGG | 0.372568 | 8.2:+72205738 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8.2:-72205622 | MS.gene08483:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8.2:-72207433 | MS.gene08483:intron |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8.2:+72205617 | None:intergenic |
| CTTTGGCTCAATATAATTTG+TGG | 0.386121 | 8.2:-72207614 | MS.gene08483:CDS |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8.2:+72205894 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8.2:-72205840 | MS.gene08483:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8.2:-72205680 | MS.gene08483:CDS |
| CATAGGCCGGTGTCAAGTAC+AGG | 0.445863 | 8.2:+72205729 | None:intergenic |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8.2:-72205862 | MS.gene08483:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8.2:-72205659 | MS.gene08483:CDS |
| CTGTACTTGACACCGGCCTA+TGG | 0.464031 | 8.2:-72205728 | MS.gene08483:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8.2:-72205679 | MS.gene08483:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8.2:+72205690 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8.2:-72205699 | MS.gene08483:CDS |
| TAGACGTGAAAAGTGGCAAT+GGG | 0.478654 | 8.2:-72207529 | MS.gene08483:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8.2:-72205583 | MS.gene08483:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8.2:+72207648 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8.2:-72205765 | MS.gene08483:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8.2:-72205503 | MS.gene08483:CDS |
| AGACTGGCGTTTCACTGAGA+TGG | 0.499038 | 8.2:-72207496 | MS.gene08483:CDS |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8.2:-72205590 | MS.gene08483:CDS |
| GACTGGCGTTTCACTGAGAT+GGG | 0.508793 | 8.2:-72207495 | MS.gene08483:CDS |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8.2:-72205865 | MS.gene08483:CDS |
| ATTACTTTAGACGTGAAAAG+TGG | 0.516981 | 8.2:-72207536 | MS.gene08483:CDS |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8.2:-72205641 | MS.gene08483:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8.2:-72205651 | MS.gene08483:CDS |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8.2:-72205678 | MS.gene08483:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8.2:-72207467 | MS.gene08483:CDS |
| AACAATATGGAAAACATTGG+TGG | 0.558953 | 8.2:-72207470 | MS.gene08483:CDS |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8.2:+72205898 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8.2:+72205486 | None:intergenic |
| AATGGGGTGCTAGAGAAGAC+TGG | 0.595480 | 8.2:-72207512 | MS.gene08483:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8.2:-72207466 | MS.gene08483:CDS |
| TTAGACGTGAAAAGTGGCAA+TGG | 0.603246 | 8.2:-72207530 | MS.gene08483:CDS |
| TGGCTCAATATAATTTGTGG+AGG | 0.605658 | 8.2:-72207611 | MS.gene08483:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.608096 | 8.2:-72207473 | MS.gene08483:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8.2:+72205864 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8.2:-72205645 | MS.gene08483:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8.2:+72205634 | None:intergenic |
| GTAATCCCTGTACTTGACAC+CGG | 0.623890 | 8.2:-72205735 | MS.gene08483:CDS |
| CCGGCCTATGGTATTACAGC+CGG | 0.626049 | 8.2:-72205716 | MS.gene08483:CDS |
| ATAGGCCGGTGTCAAGTACA+GGG | 0.634937 | 8.2:+72205730 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8.2:+72205697 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8.2:+72205899 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8.2:-72205686 | MS.gene08483:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8.2:-72205580 | MS.gene08483:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8.2:+72207649 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.682562 | 8.2:+72205712 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8.2:-72205683 | MS.gene08483:CDS |
| CCGGCTGTAATACCATAGGC+CGG | 0.693621 | 8.2:+72205716 | None:intergenic |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8.2:-72205512 | MS.gene08483:CDS |
| AGACGTGAAAAGTGGCAATG+GGG | 0.716295 | 8.2:-72207528 | MS.gene08483:CDS |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8.2:+72205593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTTTACAATTTTA+GGG | - | chr8.2:72206073-72206092 | MS.gene08483:intron | 10.0% |
| !!! | TATTAGTTATTTCTATTTTT+CGG | - | chr8.2:72206195-72206214 | MS.gene08483:intron | 10.0% |
| !! | TCAAAGAAAATTGATATATT+TGG | - | chr8.2:72206320-72206339 | MS.gene08483:intron | 15.0% |
| !! | TTGAATTATATATAATTTGG+AGG | - | chr8.2:72206102-72206121 | MS.gene08483:intron | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | - | chr8.2:72206853-72206872 | MS.gene08483:intron | 15.0% |
| !!! | CTATTTTTATTATTTTAGTC+AGG | + | chr8.2:72206702-72206721 | None:intergenic | 15.0% |
| !!! | CTGTTTTATTTTTTATAGAT+AGG | + | chr8.2:72206461-72206480 | None:intergenic | 15.0% |
| !!! | GATTGAAATTTTACAATTTT+AGG | - | chr8.2:72206072-72206091 | MS.gene08483:intron | 15.0% |
| !!! | TTTTGGATAAATAATCAATT+TGG | - | chr8.2:72205832-72205851 | MS.gene08483:CDS | 15.0% |
| !! | AAAATAAGTGAATAATGTCT+GGG | - | chr8.2:72206011-72206030 | MS.gene08483:intron | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | + | chr8.2:72207039-72207058 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr8.2:72206359-72206378 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | + | chr8.2:72205919-72205938 | None:intergenic | 20.0% |
| !!! | GATATATTTGGTTCAAAATT+TGG | - | chr8.2:72206332-72206351 | MS.gene08483:intron | 20.0% |
| !!! | TAGATTTTTTTTTTGACAGA+AGG | + | chr8.2:72207062-72207081 | None:intergenic | 20.0% |
| !!! | TTATTTTTTATAGATAGGAC+TGG | + | chr8.2:72206456-72206475 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | + | chr8.2:72207716-72207735 | None:intergenic | 20.0% |
| !!! | TTGCTTTTATTTTATATCAG+AGG | + | chr8.2:72206293-72206312 | None:intergenic | 20.0% |
| ! | AACATTAATATCGTTGTGTT+TGG | - | chr8.2:72206946-72206965 | MS.gene08483:intron | 25.0% |
| ! | GAAAATAAGTGAATAATGTC+TGG | - | chr8.2:72206010-72206029 | MS.gene08483:intron | 25.0% |
| ! | TCAAAAAAATTTGTCATGTG+CGG | + | chr8.2:72206260-72206279 | None:intergenic | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | - | chr8.2:72206041-72206060 | MS.gene08483:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | - | chr8.2:72206040-72206059 | MS.gene08483:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | - | chr8.2:72206387-72206406 | MS.gene08483:intron | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | - | chr8.2:72206386-72206405 | MS.gene08483:intron | 25.0% |
| !!! | ACATTTCATAGGATTTTTTG+TGG | - | chr8.2:72206539-72206558 | MS.gene08483:intron | 25.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | - | chr8.2:72205815-72205834 | MS.gene08483:CDS | 25.0% |
| AACAATATGGAAAACATTGG+TGG | - | chr8.2:72205711-72205730 | MS.gene08483:CDS | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | - | chr8.2:72207170-72207189 | MS.gene08483:intron | 30.0% | |
| ACAAAGTGCACAACATATAA+AGG | + | chr8.2:72207290-72207309 | None:intergenic | 30.0% | |
| AGAGTGAATTTGAATTGCAA+TGG | - | chr8.2:72207158-72207177 | MS.gene08483:intron | 30.0% | |
| ATCTATATTTCCTTTGTGCT+AGG | - | chr8.2:72207077-72207096 | MS.gene08483:intron | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | + | chr8.2:72207567-72207586 | None:intergenic | 30.0% | |
| ATTACTTTAGACGTGAAAAG+TGG | - | chr8.2:72205645-72205664 | MS.gene08483:CDS | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | + | chr8.2:72205797-72205816 | None:intergenic | 30.0% | |
| GATAATTGGCACATTCTTAA+AGG | + | chr8.2:72206234-72206253 | None:intergenic | 30.0% | |
| GTCAACAATATGGAAAACAT+TGG | - | chr8.2:72205708-72205727 | MS.gene08483:CDS | 30.0% | |
| TGGCGATAAAAACATTTCAT+AGG | - | chr8.2:72206528-72206547 | MS.gene08483:intron | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | - | chr8.2:72205803-72205822 | MS.gene08483:CDS | 30.0% | |
| ! | CTTTGGCTCAATATAATTTG+TGG | - | chr8.2:72205567-72205586 | MS.gene08483:CDS | 30.0% |
| ! | TGTGAAGAATTGATTTCTGT+AGG | - | chr8.2:72206885-72206904 | MS.gene08483:intron | 30.0% |
| ! | TTTTCAATGCACAAATGACA+AGG | + | chr8.2:72207218-72207237 | None:intergenic | 30.0% |
| !! | ACATTGTGATTTTGTTGACT+TGG | - | chr8.2:72205597-72205616 | MS.gene08483:CDS | 30.0% |
| !! | TGACATTAAGTTGGTAATGT+CGG | - | chr8.2:72205977-72205996 | MS.gene08483:intron | 30.0% |
| !! | TTGTTGCAGATGTTTTTGAT+TGG | - | chr8.2:72207254-72207273 | MS.gene08483:intron | 30.0% |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | - | chr8.2:72206203-72206222 | MS.gene08483:intron | 30.0% |
| !!! | CATTGTGATTTTGTTGACTT+GGG | - | chr8.2:72205598-72205617 | MS.gene08483:CDS | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | - | chr8.2:72206204-72206223 | MS.gene08483:intron | 30.0% |
| AAAAATTTGTCATGTGCGGA+CGG | + | chr8.2:72206256-72206275 | None:intergenic | 35.0% | |
| AAATAACAGACCTAGCACAA+AGG | + | chr8.2:72207090-72207109 | None:intergenic | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | - | chr8.2:72207416-72207435 | MS.gene08483:intron | 35.0% | |
| AATATGGAAAACATTGGTGG+TGG | - | chr8.2:72205714-72205733 | MS.gene08483:CDS | 35.0% | |
| AATCAAATCCGTTCCTTTGT+TGG | - | chr8.2:72205936-72205955 | MS.gene08483:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | + | chr8.2:72206729-72206748 | None:intergenic | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | + | chr8.2:72205535-72205554 | None:intergenic | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | + | chr8.2:72207591-72207610 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | + | chr8.2:72207286-72207305 | None:intergenic | 35.0% | |
| CAAAAACAACGCTAACACAT+AGG | + | chr8.2:72206778-72206797 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | - | chr8.2:72207310-72207329 | MS.gene08483:intron | 35.0% | |
| CTTGTCTCACTGAAATTTGA+TGG | - | chr8.2:72206508-72206527 | MS.gene08483:intron | 35.0% | |
| GAAGGAAATGACTTAAACCA+AGG | + | chr8.2:72207698-72207717 | None:intergenic | 35.0% | |
| GATGCAGTTGTACAATTTCA+GGG | + | chr8.2:72205859-72205878 | None:intergenic | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | - | chr8.2:72207341-72207360 | MS.gene08483:intron | 35.0% | |
| GGACTAAAGTGACATTAAGT+TGG | - | chr8.2:72205968-72205987 | MS.gene08483:intron | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | + | chr8.2:72207285-72207304 | None:intergenic | 35.0% | |
| GTTATTGTGAGTTGTTAGTC+AGG | - | chr8.2:72207135-72207154 | MS.gene08483:intron | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | + | chr8.2:72205536-72205555 | None:intergenic | 35.0% | |
| TATCACTACCAACAAAGGAA+CGG | + | chr8.2:72205947-72205966 | None:intergenic | 35.0% | |
| TGATGCAGTTGTACAATTTC+AGG | + | chr8.2:72205860-72205879 | None:intergenic | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | - | chr8.2:72205501-72205520 | MS.gene08483:CDS | 35.0% | |
| TTACTATGCAACACACTCTT+TGG | - | chr8.2:72205550-72205569 | MS.gene08483:CDS | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | - | chr8.2:72205715-72205734 | MS.gene08483:CDS | 35.0% |
| ! | TGGCTCAATATAATTTGTGG+AGG | - | chr8.2:72205570-72205589 | MS.gene08483:CDS | 35.0% |
| ! | TGTGTTTAGCTTATGTGACT+AGG | - | chr8.2:72207591-72207610 | MS.gene08483:CDS | 35.0% |
| !! | CTATGTGTTAGCGTTGTTTT+TGG | - | chr8.2:72206776-72206795 | MS.gene08483:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | - | chr8.2:72206967-72206986 | MS.gene08483:intron | 35.0% |
| !! | TTCCTTTGTTGGTAGTGATA+TGG | - | chr8.2:72205947-72205966 | MS.gene08483:intron | 35.0% |
| !!! | CTAGGTCTGTTATTTTTCAG+CGG | - | chr8.2:72207095-72207114 | MS.gene08483:intron | 35.0% |
| !!! | TGATTTTGTTGACTTGGGTT+TGG | - | chr8.2:72205603-72205622 | MS.gene08483:CDS | 35.0% |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | - | chr8.2:72206205-72206224 | MS.gene08483:intron | 35.0% |
| ACCAAGTCCAAGATACTCAA+AGG | + | chr8.2:72207320-72207339 | None:intergenic | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | - | chr8.2:72207316-72207335 | MS.gene08483:intron | 40.0% | |
| ACTGAGATGGGTCAACAATA+TGG | - | chr8.2:72205698-72205717 | MS.gene08483:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | + | chr8.2:72207494-72207513 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | - | chr8.2:72207559-72207578 | MS.gene08483:CDS | 40.0% | |
| GTCCATATCACTACCAACAA+AGG | + | chr8.2:72205952-72205971 | None:intergenic | 40.0% | |
| TAGACGTGAAAAGTGGCAAT+GGG | - | chr8.2:72205652-72205671 | MS.gene08483:CDS | 40.0% | |
| TTAGACGTGAAAAGTGGCAA+TGG | - | chr8.2:72205651-72205670 | MS.gene08483:CDS | 40.0% | |
| TTCACACACGTCAGTCAAAA+TGG | - | chr8.2:72206738-72206757 | MS.gene08483:intron | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | - | chr8.2:72207319-72207338 | MS.gene08483:intron | 40.0% | |
| ACAGGGATCACTGTCCAATA+TGG | + | chr8.2:72205518-72205537 | None:intergenic | 45.0% | |
| AGACGTGAAAAGTGGCAATG+GGG | - | chr8.2:72205653-72205672 | MS.gene08483:CDS | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | - | chr8.2:72207598-72207617 | MS.gene08483:CDS | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | - | chr8.2:72207669-72207688 | MS.gene08483:intron | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | - | chr8.2:72207495-72207514 | MS.gene08483:CDS | 45.0% | |
| CACACGTCAGTCAAAATGGA+CGG | - | chr8.2:72206742-72206761 | MS.gene08483:intron | 45.0% | |
| CAGAATGTAAGCCCATGTGT+TGG | + | chr8.2:72206174-72206193 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | - | chr8.2:72207551-72207570 | MS.gene08483:CDS | 45.0% | |
| GTAATCCCTGTACTTGACAC+CGG | - | chr8.2:72207446-72207465 | MS.gene08483:CDS | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | + | chr8.2:72207446-72207465 | None:intergenic | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | - | chr8.2:72207530-72207549 | MS.gene08483:CDS | 45.0% | |
| GTTTATGTCTCTCAGCAGGT+TGG | - | chr8.2:72205752-72205771 | MS.gene08483:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | + | chr8.2:72207550-72207569 | None:intergenic | 45.0% | |
| TGGTGGGATTTGACATGTTC+CGG | - | chr8.2:72206139-72206158 | MS.gene08483:intron | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | - | chr8.2:72207601-72207620 | MS.gene08483:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | - | chr8.2:72207536-72207555 | MS.gene08483:CDS | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | - | chr8.2:72205748-72205767 | MS.gene08483:CDS | 45.0% |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | - | chr8.2:72205759-72205778 | MS.gene08483:CDS | 45.0% |
| !!! | ATTTTGAATTATATATAATT+TGG | - | chr8.2:72206099-72206118 | MS.gene08483:intron | 5.0% |
| AGACTGGCGTTTCACTGAGA+TGG | - | chr8.2:72205685-72205704 | MS.gene08483:CDS | 50.0% | |
| AGGACTAAGTTCCTGCTTGG+TGG | - | chr8.2:72206122-72206141 | MS.gene08483:intron | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | - | chr8.2:72207678-72207697 | MS.gene08483:intron | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | + | chr8.2:72207487-72207506 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | - | chr8.2:72207540-72207559 | MS.gene08483:CDS | 50.0% | |
| CATGTCAAATCCCACCAAGC+AGG | + | chr8.2:72206136-72206155 | None:intergenic | 50.0% | |
| GACTGGCGTTTCACTGAGAT+GGG | - | chr8.2:72205686-72205705 | MS.gene08483:CDS | 50.0% | |
| GGACTAAGTTCCTGCTTGGT+GGG | - | chr8.2:72206123-72206142 | MS.gene08483:intron | 50.0% | |
| GGTGTCCAACACCAACACAT+GGG | - | chr8.2:72206160-72206179 | MS.gene08483:intron | 50.0% | |
| GTCATGTGCGGACGGATAAT+TGG | + | chr8.2:72206248-72206267 | None:intergenic | 50.0% | |
| TGGAGGACTAAGTTCCTGCT+TGG | - | chr8.2:72206119-72206138 | MS.gene08483:intron | 50.0% | |
| ! | AATGGGGTGCTAGAGAAGAC+TGG | - | chr8.2:72205669-72205688 | MS.gene08483:CDS | 50.0% |
| ! | ATAGGCCGGTGTCAAGTACA+GGG | + | chr8.2:72207454-72207473 | None:intergenic | 50.0% |
| ! | GTAAGCCCATGTGTTGGTGT+TGG | + | chr8.2:72206168-72206187 | None:intergenic | 50.0% |
| !! | CATGTGTTGGTGTTGGACAC+CGG | + | chr8.2:72206161-72206180 | None:intergenic | 50.0% |
| ACTTTGGTGAGACGCTGTGG+TGG | - | chr8.2:72207498-72207517 | MS.gene08483:CDS | 55.0% | |
| AGCCGGCGTCCGAATTACTT+TGG | - | chr8.2:72207482-72207501 | MS.gene08483:CDS | 55.0% | |
| CCGGCCTATGGTATTACAGC+CGG | - | chr8.2:72207465-72207484 | MS.gene08483:CDS | 55.0% | |
| CCGGCTGTAATACCATAGGC+CGG | + | chr8.2:72207468-72207487 | None:intergenic | 55.0% | |
| CGGTGTCCAACACCAACACA+TGG | - | chr8.2:72206159-72206178 | MS.gene08483:intron | 55.0% | |
| CTGTACTTGACACCGGCCTA+TGG | - | chr8.2:72207453-72207472 | MS.gene08483:CDS | 55.0% | |
| ! | CATAGGCCGGTGTCAAGTAC+AGG | + | chr8.2:72207455-72207474 | None:intergenic | 55.0% |
| ! | GACGCCGGCTGTAATACCAT+AGG | + | chr8.2:72207472-72207491 | None:intergenic | 55.0% |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | - | chr8.2:72207522-72207541 | MS.gene08483:CDS | 55.0% |
| TGGTGAGACGCTGTGGTGGT+GGG | - | chr8.2:72207502-72207521 | MS.gene08483:CDS | 60.0% | |
| TTGGTGAGACGCTGTGGTGG+TGG | - | chr8.2:72207501-72207520 | MS.gene08483:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | - | chr8.2:72207503-72207522 | MS.gene08483:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | - | chr8.2:72207508-72207527 | MS.gene08483:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 72205461 | 72207742 | 72205461 | ID=MS.gene08483 |
| chr8.2 | mRNA | 72205461 | 72207742 | 72205461 | ID=MS.gene08483.t1;Parent=MS.gene08483 |
| chr8.2 | exon | 72207739 | 72207742 | 72207739 | ID=MS.gene08483.t1.exon1;Parent=MS.gene08483.t1 |
| chr8.2 | CDS | 72207739 | 72207742 | 72207739 | ID=cds.MS.gene08483.t1;Parent=MS.gene08483.t1 |
| chr8.2 | exon | 72207434 | 72207675 | 72207434 | ID=MS.gene08483.t1.exon2;Parent=MS.gene08483.t1 |
| chr8.2 | CDS | 72207434 | 72207675 | 72207434 | ID=cds.MS.gene08483.t1;Parent=MS.gene08483.t1 |
| chr8.2 | exon | 72205461 | 72205940 | 72205461 | ID=MS.gene08483.t1.exon3;Parent=MS.gene08483.t1 |
| chr8.2 | CDS | 72205461 | 72205940 | 72205461 | ID=cds.MS.gene08483.t1;Parent=MS.gene08483.t1 |
| Gene Sequence |
| Protein sequence |
