Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08675.t1 | RHN40111.1 | 82.3 | 79 | 13 | 1 | 1 | 79 | 176 | 253 | 3.90E-22 | 114.4 |
| MS.gene08675.t1 | RHN40111.1 | 87.9 | 58 | 7 | 0 | 70 | 127 | 726 | 783 | 1.50E-18 | 102.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08675.t1 | P10978 | 49.1 | 55 | 28 | 0 | 70 | 124 | 1271 | 1325 | 4.2e-09 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08675.t1 | A0A396GIW2 | 82.3 | 79 | 13 | 1 | 1 | 79 | 176 | 253 | 2.8e-22 | 114.4 |
| MS.gene08675.t1 | A0A396GIW2 | 87.9 | 58 | 7 | 0 | 70 | 127 | 726 | 783 | 1.1e-18 | 102.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058266 | MS.gene08675 | 0.848017 | 8.01E-60 | -1.69E-46 |
| MS.gene060426 | MS.gene08675 | 0.814126 | 1.81E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTGTGGCAACTCTTAC+AGG | 0.225907 | 4.4:-45278307 | None:intergenic |
| TCAACCTTACCATCACATTT+TGG | 0.252049 | 4.4:-45278265 | None:intergenic |
| ATCTCCTGAGCTGAGATGTT+GGG | 0.302898 | 4.4:-45278420 | None:intergenic |
| TCACTACCATCTTCAATTAC+TGG | 0.376171 | 4.4:-45278367 | None:intergenic |
| TAGTGATGATGAAGATGTTC+AGG | 0.431216 | 4.4:+45278384 | MS.gene08675:CDS |
| GATGAAGACCCTAGGGTTGA+TGG | 0.460558 | 4.4:+45278340 | MS.gene08675:CDS |
| CAACTTTGTGCCGAGTTGAT+CGG | 0.465207 | 4.4:+45280029 | MS.gene08675:CDS |
| GAACTAGGGTACCTGGTAGA+TGG | 0.478163 | 4.4:-45278460 | None:intergenic |
| GATCTCCTGAGCTGAGATGT+TGG | 0.479025 | 4.4:-45278421 | None:intergenic |
| AATCCCCAACATCTCAGCTC+AGG | 0.503790 | 4.4:+45278416 | MS.gene08675:CDS |
| AACACCAAAATGTGATGGTA+AGG | 0.512205 | 4.4:+45278261 | MS.gene08675:CDS |
| ATATTGATGTCAGATATCAT+TGG | 0.516520 | 4.4:+45279904 | MS.gene08675:intron |
| TCTCCTGAGCTGAGATGTTG+GGG | 0.523063 | 4.4:-45278419 | None:intergenic |
| GGAAGAACAACAATTTATGT+TGG | 0.534006 | 4.4:+45279941 | MS.gene08675:CDS |
| CTGTAAGAGTTGCCACAGAA+GGG | 0.536965 | 4.4:+45278308 | MS.gene08675:CDS |
| TGTAAGAGTTGCCACAGAAG+GGG | 0.544300 | 4.4:+45278309 | MS.gene08675:CDS |
| ACTGGCTCACCATCAACCCT+AGG | 0.552430 | 4.4:-45278349 | None:intergenic |
| GAGATCTTGATGAAGACCCT+AGG | 0.554127 | 4.4:+45278332 | MS.gene08675:CDS |
| CCTGTAAGAGTTGCCACAGA+AGG | 0.558919 | 4.4:+45278307 | MS.gene08675:CDS |
| ACTCTTACAGGAGGAGTGAT+CGG | 0.576759 | 4.4:-45278295 | None:intergenic |
| TTGTGCCGAGTTGATCGGCA+TGG | 0.580056 | 4.4:+45280034 | MS.gene08675:CDS |
| CCAGAAACACCAAAATGTGA+TGG | 0.595828 | 4.4:+45278256 | MS.gene08675:CDS |
| GCGATCCATGCCGATCAACT+CGG | 0.603085 | 4.4:-45280039 | None:intergenic |
| ACTTTCGTCAACATATCCGC+AGG | 0.606804 | 4.4:-45279987 | None:intergenic |
| AGATCTTGATGAAGACCCTA+GGG | 0.607768 | 4.4:+45278333 | MS.gene08675:CDS |
| GAGGTCGTCAACCATCTACC+AGG | 0.616628 | 4.4:+45278449 | MS.gene08675:CDS |
| GATGATGAAGATGTTCAGGA+TGG | 0.628053 | 4.4:+45278388 | MS.gene08675:CDS |
| GGTGAGCCAGTAATTGAAGA+TGG | 0.629717 | 4.4:+45278361 | MS.gene08675:CDS |
| GTAAGAGTTGCCACAGAAGG+GGG | 0.631031 | 4.4:+45278310 | MS.gene08675:CDS |
| CTGGCTCACCATCAACCCTA+GGG | 0.637088 | 4.4:-45278348 | None:intergenic |
| TCATTGGTTGCGTCAAGCAG+CGG | 0.654978 | 4.4:+45279920 | MS.gene08675:CDS |
| CAGCTCAGGAGATCAAGCAG+AGG | 0.675895 | 4.4:+45278430 | MS.gene08675:CDS |
| TCTGTGGCAACTCTTACAGG+AGG | 0.691602 | 4.4:-45278304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATTTCTTGATCAAT+TGG | + | chr4.4:45279791-45279810 | MS.gene08675:intron | 20.0% |
| !! | AAAAGATTTCTTGATCAATT+GGG | + | chr4.4:45279792-45279811 | MS.gene08675:intron | 20.0% |
| ! | ATATTGATGTCAGATATCAT+TGG | + | chr4.4:45279904-45279923 | MS.gene08675:intron | 25.0% |
| ! | TAATGAAGTTCAAACTCATA+AGG | + | chr4.4:45278525-45278544 | MS.gene08675:intron | 25.0% |
| ! | TCATTTGACATGAAAAATCT+AGG | + | chr4.4:45279174-45279193 | MS.gene08675:intron | 25.0% |
| ! | TGAACTTCATTAAAACTTTC+CGG | - | chr4.4:45278517-45278536 | None:intergenic | 25.0% |
| !! | AGTTTAAAATGATTGGCTAA+CGG | - | chr4.4:45279333-45279352 | None:intergenic | 25.0% |
| !!! | ATAAGTATCATTTTTCTGCA+AGG | - | chr4.4:45278593-45278612 | None:intergenic | 25.0% |
| !!! | ATGTTTTGACATATACACAA+TGG | - | chr4.4:45279050-45279069 | None:intergenic | 25.0% |
| AATTTCTTATACCATTGCCT+TGG | - | chr4.4:45278982-45279001 | None:intergenic | 30.0% | |
| ATTGAACTCATCTTAACAAC+TGG | - | chr4.4:45278772-45278791 | None:intergenic | 30.0% | |
| CTAGAAAGATTCAACATGAA+GGG | + | chr4.4:45279288-45279307 | MS.gene08675:intron | 30.0% | |
| CTCATAAGGATAAAATCCAA+TGG | + | chr4.4:45278539-45278558 | MS.gene08675:intron | 30.0% | |
| GGAAGAACAACAATTTATGT+TGG | + | chr4.4:45279941-45279960 | MS.gene08675:CDS | 30.0% | |
| GTATATGTCAAAACATTTCG+AGG | + | chr4.4:45279054-45279073 | MS.gene08675:intron | 30.0% | |
| TACATTTGTATCACAGATGA+AGG | + | chr4.4:45278487-45278506 | MS.gene08675:intron | 30.0% | |
| TCTAGAAAGATTCAACATGA+AGG | + | chr4.4:45279287-45279306 | MS.gene08675:intron | 30.0% | |
| ! | AGTTCAATTCGAGTTATACT+CGG | + | chr4.4:45278784-45278803 | MS.gene08675:intron | 30.0% |
| ! | TCTGCTGAGTTTAAAATGAT+TGG | - | chr4.4:45279340-45279359 | None:intergenic | 30.0% |
| ! | TGTAGATGATATGTTGATAG+TGG | + | chr4.4:45279104-45279123 | MS.gene08675:intron | 30.0% |
| !! | CTTTTTCATCTTGACTAGTA+GGG | - | chr4.4:45279371-45279390 | None:intergenic | 30.0% |
| !! | GTAGATGATATGTTGATAGT+GGG | + | chr4.4:45279105-45279124 | MS.gene08675:intron | 30.0% |
| !! | TCTTTTTCATCTTGACTAGT+AGG | - | chr4.4:45279372-45279391 | None:intergenic | 30.0% |
| AAACTGAAGAAGAGCTTGTA+CGG | + | chr4.4:45278943-45278962 | MS.gene08675:intron | 35.0% | |
| AACACCAAAATGTGATGGTA+AGG | + | chr4.4:45278261-45278280 | MS.gene08675:CDS | 35.0% | |
| AATGGTGTTTACTTTCTCAG+GGG | + | chr4.4:45279665-45279684 | MS.gene08675:intron | 35.0% | |
| ATACAAATGTACTCCGAACT+AGG | - | chr4.4:45278478-45278497 | None:intergenic | 35.0% | |
| CAATCCTGGTAAAGAACATT+GGG | + | chr4.4:45279503-45279522 | MS.gene08675:intron | 35.0% | |
| GAATGGTGTTTACTTTCTCA+GGG | + | chr4.4:45279664-45279683 | MS.gene08675:intron | 35.0% | |
| GGACAAGATAAGGAAATGAT+TGG | + | chr4.4:45279126-45279145 | MS.gene08675:intron | 35.0% | |
| GGATAAAATCCAATGGATGA+AGG | + | chr4.4:45278546-45278565 | MS.gene08675:intron | 35.0% | |
| GTAAAGACTGCATTTCTTCA+TGG | + | chr4.4:45278847-45278866 | MS.gene08675:intron | 35.0% | |
| TACAAATGTACTCCGAACTA+GGG | - | chr4.4:45278477-45278496 | None:intergenic | 35.0% | |
| TAGAAAGTCTACTTCAGGAA+TGG | + | chr4.4:45279647-45279666 | MS.gene08675:intron | 35.0% | |
| TCACACTGATAAAAATCCTG+CGG | + | chr4.4:45279971-45279990 | MS.gene08675:CDS | 35.0% | |
| TCACTACCATCTTCAATTAC+TGG | - | chr4.4:45278370-45278389 | None:intergenic | 35.0% | |
| TCTAGATGAAGAGATCTACA+TGG | + | chr4.4:45278873-45278892 | MS.gene08675:intron | 35.0% | |
| ! | AATGATTGGTGACTTGAAGA+AGG | + | chr4.4:45279140-45279159 | MS.gene08675:intron | 35.0% |
| ! | AATTCGAGTTATACTCGGAT+TGG | + | chr4.4:45278789-45278808 | MS.gene08675:intron | 35.0% |
| ! | ATACCTAGAATTTGCTTTGC+AGG | - | chr4.4:45279201-45279220 | None:intergenic | 35.0% |
| ! | TACCTAGAATTTGCTTTGCA+GGG | - | chr4.4:45279200-45279219 | None:intergenic | 35.0% |
| ! | TAGTGATGATGAAGATGTTC+AGG | + | chr4.4:45278384-45278403 | MS.gene08675:CDS | 35.0% |
| ! | TCAACCTTACCATCACATTT+TGG | - | chr4.4:45278268-45278287 | None:intergenic | 35.0% |
| !! | GGATCAGAATCGATTTTGAA+AGG | + | chr4.4:45279588-45279607 | MS.gene08675:intron | 35.0% |
| AAAAGCCCTGAAGAACAAGT+GGG | + | chr4.4:45278639-45278658 | MS.gene08675:intron | 40.0% | |
| AAGCAGGGAAAGAAATGCTT+TGG | + | chr4.4:45279766-45279785 | MS.gene08675:intron | 40.0% | |
| ACAACAACAGTATGTGGAAC+GGG | + | chr4.4:45279263-45279282 | MS.gene08675:intron | 40.0% | |
| AGATCTTGATGAAGACCCTA+GGG | + | chr4.4:45278333-45278352 | MS.gene08675:CDS | 40.0% | |
| AGGATTTGAGAAGACTCGAA+AGG | + | chr4.4:45278906-45278925 | MS.gene08675:intron | 40.0% | |
| ATCTACATGGTACAACCAGA+AGG | + | chr4.4:45278886-45278905 | MS.gene08675:intron | 40.0% | |
| ATGGTGTTTACTTTCTCAGG+GGG | + | chr4.4:45279666-45279685 | MS.gene08675:intron | 40.0% | |
| CAATATGCTTTGTACGAGAG+TGG | - | chr4.4:45279890-45279909 | None:intergenic | 40.0% | |
| CACAACAACAGTATGTGGAA+CGG | + | chr4.4:45279262-45279281 | MS.gene08675:intron | 40.0% | |
| CCAATCCTGGTAAAGAACAT+TGG | + | chr4.4:45279502-45279521 | MS.gene08675:intron | 40.0% | |
| CCAATGTTCTTTACCAGGAT+TGG | - | chr4.4:45279505-45279524 | None:intergenic | 40.0% | |
| CCAGAAACACCAAAATGTGA+TGG | + | chr4.4:45278256-45278275 | MS.gene08675:CDS | 40.0% | |
| GAACTTGTGAAACTTCCTGA+AGG | + | chr4.4:45278613-45278632 | MS.gene08675:intron | 40.0% | |
| GATGATGAAGATGTTCAGGA+TGG | + | chr4.4:45278388-45278407 | MS.gene08675:CDS | 40.0% | |
| GATGGTAGAAAGTCTACTTC+AGG | + | chr4.4:45279642-45279661 | MS.gene08675:intron | 40.0% | |
| GGAATGGTGTTTACTTTCTC+AGG | + | chr4.4:45279663-45279682 | MS.gene08675:intron | 40.0% | |
| GTGTTCAAGCTCAAGAAAGA+TGG | + | chr4.4:45278661-45278680 | MS.gene08675:intron | 40.0% | |
| GTTGTCACAACAACAGTATG+TGG | + | chr4.4:45279257-45279276 | MS.gene08675:intron | 40.0% | |
| TAAAACAAGCTCCAAGGCAA+TGG | + | chr4.4:45278968-45278987 | MS.gene08675:intron | 40.0% | |
| TCTGATAAGTGCTTACGCTT+TGG | + | chr4.4:45279564-45279583 | MS.gene08675:intron | 40.0% | |
| TGACAAGCTAGTGAAGTACA+AGG | + | chr4.4:45278684-45278703 | MS.gene08675:intron | 40.0% | |
| TGATCAATTGGGAATGAAGC+AGG | + | chr4.4:45279803-45279822 | MS.gene08675:intron | 40.0% | |
| TGGGAGTTTGATGTATGCAA+TGG | + | chr4.4:45279425-45279444 | MS.gene08675:intron | 40.0% | |
| TGTATGCAATGGTTTCCACT+AGG | + | chr4.4:45279436-45279455 | MS.gene08675:intron | 40.0% | |
| TGTTGCCTTATCAACAACAG+AGG | + | chr4.4:45279722-45279741 | MS.gene08675:intron | 40.0% | |
| ! | ACGGATTAAAACAAGCTCCA+AGG | + | chr4.4:45278962-45278981 | MS.gene08675:intron | 40.0% |
| ! | ATTGGTTGCTAGCTTGGATT+TGG | + | chr4.4:45278807-45278826 | MS.gene08675:intron | 40.0% |
| ! | GGATTTGGAGCTTGAACAAA+TGG | + | chr4.4:45278822-45278841 | MS.gene08675:intron | 40.0% |
| ! | GTATGAAGATTTTGCGAGAC+CGG | + | chr4.4:45279217-45279236 | MS.gene08675:intron | 40.0% |
| ! | TGGATCTTGAGGTATCTGAA+AGG | + | chr4.4:45279537-45279556 | MS.gene08675:intron | 40.0% |
| !! | GTTGATAGTGGGACAAGATA+AGG | + | chr4.4:45279116-45279135 | MS.gene08675:intron | 40.0% |
| !!! | CCATCACATTTTGGTGTTTC+TGG | - | chr4.4:45278259-45278278 | None:intergenic | 40.0% |
| AACATTGGGAAGCTGTGAAG+TGG | + | chr4.4:45279517-45279536 | MS.gene08675:intron | 45.0% | |
| AAGCGCTTTGACTATCGCAA+TGG | - | chr4.4:45279842-45279861 | None:intergenic | 45.0% | |
| AAGCTGTGAAGTGGATCTTG+AGG | + | chr4.4:45279526-45279545 | MS.gene08675:intron | 45.0% | |
| AAGGCTCGCTTAGTCGTTAA+AGG | + | chr4.4:45278703-45278722 | MS.gene08675:intron | 45.0% | |
| ACAATGGTCTGCATCTGTCT+TGG | - | chr4.4:45279034-45279053 | None:intergenic | 45.0% | |
| ACTCTTACAGGAGGAGTGAT+CGG | - | chr4.4:45278298-45278317 | None:intergenic | 45.0% | |
| ACTTTCGTCAACATATCCGC+AGG | - | chr4.4:45279990-45280009 | None:intergenic | 45.0% | |
| AGAGGCGGAATATATTGCCA+TGG | + | chr4.4:45279740-45279759 | MS.gene08675:intron | 45.0% | |
| AGCAGGTATCTTTCCAATCC+TGG | + | chr4.4:45279489-45279508 | MS.gene08675:intron | 45.0% | |
| AGGCTACACAGATGCTGATA+TGG | + | chr4.4:45279608-45279627 | MS.gene08675:intron | 45.0% | |
| ATACCTTACTCCTCAGCAGT+TGG | + | chr4.4:45279405-45279424 | MS.gene08675:intron | 45.0% | |
| ATATTGCCATGGCTGAAGCA+GGG | + | chr4.4:45279751-45279770 | MS.gene08675:intron | 45.0% | |
| ATCTACCAGGTACCCTAGTT+CGG | + | chr4.4:45278462-45278481 | MS.gene08675:intron | 45.0% | |
| ATCTCCTGAGCTGAGATGTT+GGG | - | chr4.4:45278423-45278442 | None:intergenic | 45.0% | |
| ATGCAGTTGGAGTTGTTAGC+AGG | + | chr4.4:45279472-45279491 | MS.gene08675:intron | 45.0% | |
| CGAGTCTTCTCAAATCCTTC+TGG | - | chr4.4:45278904-45278923 | None:intergenic | 45.0% | |
| CGCTTAGTCGTTAAAGGCTT+TGG | + | chr4.4:45278709-45278728 | MS.gene08675:intron | 45.0% | |
| CTGTAAGAGTTGCCACAGAA+GGG | + | chr4.4:45278308-45278327 | MS.gene08675:CDS | 45.0% | |
| CTTGCATTGCCTTCATCCAT+TGG | - | chr4.4:45278558-45278577 | None:intergenic | 45.0% | |
| GAAAAGCCCTGAAGAACAAG+TGG | + | chr4.4:45278638-45278657 | MS.gene08675:intron | 45.0% | |
| GAACACCCACTTGTTCTTCA+GGG | - | chr4.4:45278647-45278666 | None:intergenic | 45.0% | |
| GAAGGCAATGCAAGAAGAGA+TGG | + | chr4.4:45278564-45278583 | MS.gene08675:intron | 45.0% | |
| GAGATCTTGATGAAGACCCT+AGG | + | chr4.4:45278332-45278351 | MS.gene08675:CDS | 45.0% | |
| GATAAGTGCTTACGCTTTGG+AGG | + | chr4.4:45279567-45279586 | MS.gene08675:intron | 45.0% | |
| GCTTCCCAATGTTCTTTACC+AGG | - | chr4.4:45279510-45279529 | None:intergenic | 45.0% | |
| GGTGAGCCAGTAATTGAAGA+TGG | + | chr4.4:45278361-45278380 | MS.gene08675:CDS | 45.0% | |
| TACACAGATGCTGATATGGC+AGG | + | chr4.4:45279612-45279631 | MS.gene08675:intron | 45.0% | |
| TACCTTACTCCTCAGCAGTT+GGG | + | chr4.4:45279406-45279425 | MS.gene08675:intron | 45.0% | |
| TATATTGCCATGGCTGAAGC+AGG | + | chr4.4:45279750-45279769 | MS.gene08675:intron | 45.0% | |
| TATCACAGATGAAGGAGAGC+CGG | + | chr4.4:45278495-45278514 | MS.gene08675:intron | 45.0% | |
| TGAACACCCACTTGTTCTTC+AGG | - | chr4.4:45278648-45278667 | None:intergenic | 45.0% | |
| TGCCTTATCAACAACAGAGG+CGG | + | chr4.4:45279725-45279744 | MS.gene08675:intron | 45.0% | |
| TGTAAGAGTTGCCACAGAAG+GGG | + | chr4.4:45278309-45278328 | MS.gene08675:CDS | 45.0% | |
| TTCCGCCTCTGTTGTTGATA+AGG | - | chr4.4:45279730-45279749 | None:intergenic | 45.0% | |
| ! | ACCATAGCTTCCTAGCTTTC+CGG | - | chr4.4:45279239-45279258 | None:intergenic | 45.0% |
| ! | TTGCGATAGTCAAAGCGCTT+TGG | + | chr4.4:45279842-45279861 | MS.gene08675:intron | 45.0% |
| !! | AAAGGCTTTGGACAAAAGCG+AGG | + | chr4.4:45278721-45278740 | MS.gene08675:intron | 45.0% |
| !! | CAACTTTGTGCCGAGTTGAT+CGG | + | chr4.4:45280029-45280048 | MS.gene08675:CDS | 45.0% |
| AATCCCCAACATCTCAGCTC+AGG | + | chr4.4:45278416-45278435 | MS.gene08675:CDS | 50.0% | |
| ACCGGAAAGCTAGGAAGCTA+TGG | + | chr4.4:45279235-45279254 | MS.gene08675:intron | 50.0% | |
| ATCAAGATCTCCCCCTTCTG+TGG | - | chr4.4:45278323-45278342 | None:intergenic | 50.0% | |
| ATGAGCAATGTCTGGCCTAG+TGG | - | chr4.4:45279454-45279473 | None:intergenic | 50.0% | |
| CATCAAACTCCCAACTGCTG+AGG | - | chr4.4:45279418-45279437 | None:intergenic | 50.0% | |
| CCAACTGCATGAGCAATGTC+TGG | - | chr4.4:45279462-45279481 | None:intergenic | 50.0% | |
| CCAGACATTGCTCATGCAGT+TGG | + | chr4.4:45279459-45279478 | MS.gene08675:intron | 50.0% | |
| CCTGTAAGAGTTGCCACAGA+AGG | + | chr4.4:45278307-45278326 | MS.gene08675:CDS | 50.0% | |
| CCTTCTGTGGCAACTCTTAC+AGG | - | chr4.4:45278310-45278329 | None:intergenic | 50.0% | |
| GATCTCCTGAGCTGAGATGT+TGG | - | chr4.4:45278424-45278443 | None:intergenic | 50.0% | |
| GATGAAGACCCTAGGGTTGA+TGG | + | chr4.4:45278340-45278359 | MS.gene08675:CDS | 50.0% | |
| GGCCCTGCAAAGCAAATTCT+AGG | + | chr4.4:45279195-45279214 | MS.gene08675:intron | 50.0% | |
| GTAAGAGTTGCCACAGAAGG+GGG | + | chr4.4:45278310-45278329 | MS.gene08675:CDS | 50.0% | |
| TCTCCTGAGCTGAGATGTTG+GGG | - | chr4.4:45278422-45278441 | None:intergenic | 50.0% | |
| TCTGTGGCAACTCTTACAGG+AGG | - | chr4.4:45278307-45278326 | None:intergenic | 50.0% | |
| TGCTGATATGGCAGGTGACT+TGG | + | chr4.4:45279620-45279639 | MS.gene08675:intron | 50.0% | |
| TTCTTTCCCTGCTTCAGCCA+TGG | - | chr4.4:45279760-45279779 | None:intergenic | 50.0% | |
| TTGGCTAACGGCGTGTTAAC+TGG | - | chr4.4:45279321-45279340 | None:intergenic | 50.0% | |
| ! | GAACTAGGGTACCTGGTAGA+TGG | - | chr4.4:45278463-45278482 | None:intergenic | 50.0% |
| ! | GATATGGCAGGTGACTTGGA+TGG | + | chr4.4:45279624-45279643 | MS.gene08675:intron | 50.0% |
| ! | TCATTGGTTGCGTCAAGCAG+CGG | + | chr4.4:45279920-45279939 | MS.gene08675:CDS | 50.0% |
| ! | TTCAGGGCTTTTCTGCCTTC+AGG | - | chr4.4:45278631-45278650 | None:intergenic | 50.0% |
| ! | TTTTGCGAGACCGGAAAGCT+AGG | + | chr4.4:45279226-45279245 | MS.gene08675:intron | 50.0% |
| !! | ACTCGGATTGGTTGCTAGCT+TGG | + | chr4.4:45278801-45278820 | MS.gene08675:intron | 50.0% |
| !! | GAAGACTCGAAAGGAGCACT+TGG | + | chr4.4:45278915-45278934 | MS.gene08675:intron | 50.0% |
| CAGCTCAGGAGATCAAGCAG+AGG | + | chr4.4:45278430-45278449 | MS.gene08675:CDS | 55.0% | |
| CTCCCAACTGCTGAGGAGTA+AGG | - | chr4.4:45279411-45279430 | None:intergenic | 55.0% | |
| CTGGCTCACCATCAACCCTA+GGG | - | chr4.4:45278351-45278370 | None:intergenic | 55.0% | |
| GAGGTCGTCAACCATCTACC+AGG | + | chr4.4:45278449-45278468 | MS.gene08675:CDS | 55.0% | |
| GCGATCCATGCCGATCAACT+CGG | - | chr4.4:45280042-45280061 | None:intergenic | 55.0% | |
| TCTCAGGGGGAGCTGTATCA+TGG | + | chr4.4:45279679-45279698 | MS.gene08675:intron | 55.0% | |
| ! | ACTGGCTCACCATCAACCCT+AGG | - | chr4.4:45278352-45278371 | None:intergenic | 55.0% |
| ! | GTACTCCGAACTAGGGTACC+TGG | - | chr4.4:45278470-45278489 | None:intergenic | 55.0% |
| !! | TTGTGCCGAGTTGATCGGCA+TGG | + | chr4.4:45280034-45280053 | MS.gene08675:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45278238 | 45280067 | 45278238 | ID=MS.gene08675 |
| chr4.4 | mRNA | 45278238 | 45280067 | 45278238 | ID=MS.gene08675.t1;Parent=MS.gene08675 |
| chr4.4 | exon | 45278238 | 45278470 | 45278238 | ID=MS.gene08675.t1.exon1;Parent=MS.gene08675.t1 |
| chr4.4 | CDS | 45278238 | 45278470 | 45278238 | ID=cds.MS.gene08675.t1;Parent=MS.gene08675.t1 |
| chr4.4 | exon | 45279917 | 45280067 | 45279917 | ID=MS.gene08675.t1.exon2;Parent=MS.gene08675.t1 |
| chr4.4 | CDS | 45279917 | 45280067 | 45279917 | ID=cds.MS.gene08675.t1;Parent=MS.gene08675.t1 |
| Gene Sequence |
| Protein sequence |
