Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08809.t1 | XP_013446625.1 | 98.1 | 160 | 3 | 0 | 1 | 160 | 34 | 193 | 5.90E-76 | 293.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08809.t1 | Q9SDN0 | 53.8 | 158 | 67 | 3 | 2 | 157 | 40 | 193 | 2.1e-37 | 156.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08809.t1 | A0A072TT90 | 98.1 | 160 | 3 | 0 | 1 | 160 | 34 | 193 | 4.3e-76 | 293.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene08809 | 0.808089 | 3.68E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene08809 | 0.819067 | 1.41E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene08809 | 0.839962 | 1.16E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene08809 | 0.80472 | 1.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08809.t1 | MTR_8g081620 | 97.500 | 160 | 4 | 0 | 1 | 160 | 34 | 193 | 4.63e-116 | 326 |
| MS.gene08809.t1 | MTR_4g094275 | 34.848 | 132 | 75 | 4 | 27 | 156 | 51 | 173 | 5.46e-18 | 77.0 |
| MS.gene08809.t1 | MTR_5g022210 | 48.485 | 66 | 34 | 0 | 29 | 94 | 74 | 139 | 9.81e-15 | 68.2 |
| MS.gene08809.t1 | MTR_5g022180 | 45.714 | 70 | 38 | 0 | 27 | 96 | 71 | 140 | 3.60e-14 | 66.6 |
| MS.gene08809.t1 | MTR_5g022130 | 44.928 | 69 | 38 | 0 | 28 | 96 | 72 | 140 | 4.73e-14 | 66.2 |
| MS.gene08809.t1 | MTR_8g075780 | 42.857 | 70 | 40 | 0 | 27 | 96 | 47 | 116 | 2.11e-13 | 63.9 |
| MS.gene08809.t1 | MTR_2g104030 | 35.644 | 101 | 54 | 2 | 6 | 98 | 41 | 138 | 2.92e-13 | 66.6 |
| MS.gene08809.t1 | MTR_2g008520 | 37.374 | 99 | 58 | 3 | 3 | 98 | 31 | 128 | 5.18e-13 | 63.5 |
| MS.gene08809.t1 | MTR_2g008540 | 37.374 | 99 | 58 | 3 | 3 | 98 | 31 | 128 | 5.18e-13 | 63.5 |
| MS.gene08809.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 5.40e-13 | 62.4 |
| MS.gene08809.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 6.47e-13 | 63.2 |
| MS.gene08809.t1 | MTR_3g061170 | 47.692 | 65 | 34 | 0 | 27 | 91 | 59 | 123 | 7.08e-13 | 63.2 |
| MS.gene08809.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 3.04e-12 | 62.4 |
| MS.gene08809.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 3.72e-12 | 61.6 |
| MS.gene08809.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 5.22e-12 | 62.0 |
| MS.gene08809.t1 | MTR_7g109340 | 42.466 | 73 | 40 | 1 | 26 | 98 | 25 | 95 | 6.74e-12 | 62.4 |
| MS.gene08809.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 6.92e-12 | 61.2 |
| MS.gene08809.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 1.80e-11 | 60.1 |
| MS.gene08809.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 80 | 150 | 3.36e-11 | 60.5 |
| MS.gene08809.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 3.40e-11 | 60.5 |
| MS.gene08809.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 3.78e-11 | 60.1 |
| MS.gene08809.t1 | MTR_3g087030 | 38.889 | 72 | 41 | 1 | 21 | 92 | 76 | 144 | 3.83e-11 | 60.5 |
| MS.gene08809.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 74 | 144 | 3.93e-11 | 60.5 |
| MS.gene08809.t1 | MTR_7g085600 | 45.455 | 66 | 33 | 1 | 29 | 94 | 56 | 118 | 4.37e-11 | 60.1 |
| MS.gene08809.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 4.69e-11 | 60.1 |
| MS.gene08809.t1 | MTR_3g108020 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 6.63e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08809.t1 | AT4G13830 | 57.595 | 158 | 61 | 3 | 2 | 157 | 40 | 193 | 1.05e-57 | 179 |
| MS.gene08809.t1 | AT4G13830 | 61.404 | 114 | 42 | 2 | 2 | 114 | 40 | 152 | 1.80e-41 | 136 |
| MS.gene08809.t1 | AT4G13830 | 60.526 | 114 | 43 | 2 | 2 | 114 | 40 | 152 | 4.28e-41 | 136 |
| MS.gene08809.t1 | AT4G36040 | 47.887 | 71 | 36 | 1 | 27 | 96 | 65 | 135 | 9.32e-15 | 68.2 |
| MS.gene08809.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 1.15e-13 | 63.9 |
| MS.gene08809.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 1.81e-13 | 64.7 |
| MS.gene08809.t1 | AT3G13310 | 42.647 | 68 | 34 | 1 | 27 | 94 | 64 | 126 | 1.97e-13 | 64.3 |
| MS.gene08809.t1 | AT2G17880 | 45.455 | 66 | 36 | 0 | 27 | 92 | 68 | 133 | 1.95e-12 | 62.0 |
| MS.gene08809.t1 | AT1G59980 | 46.970 | 66 | 33 | 1 | 26 | 91 | 22 | 85 | 8.04e-12 | 62.4 |
| MS.gene08809.t1 | AT1G59980 | 42.466 | 73 | 40 | 1 | 26 | 98 | 22 | 92 | 8.05e-12 | 62.4 |
| MS.gene08809.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.05e-11 | 62.0 |
| MS.gene08809.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.05e-11 | 62.0 |
| MS.gene08809.t1 | AT3G62600 | 39.744 | 78 | 45 | 1 | 21 | 98 | 20 | 95 | 1.36e-11 | 61.6 |
| MS.gene08809.t1 | AT3G14200 | 43.939 | 66 | 36 | 1 | 27 | 91 | 12 | 77 | 1.84e-11 | 60.5 |
| MS.gene08809.t1 | AT2G22360 | 43.077 | 65 | 34 | 1 | 28 | 92 | 87 | 148 | 2.26e-11 | 61.2 |
| MS.gene08809.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.28e-11 | 60.5 |
| MS.gene08809.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.28e-11 | 60.5 |
| MS.gene08809.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.28e-11 | 60.5 |
| MS.gene08809.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.76e-11 | 60.5 |
| MS.gene08809.t1 | AT5G25530 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 5.68e-11 | 59.7 |
| MS.gene08809.t1 | AT2G35720 | 33.000 | 100 | 66 | 1 | 26 | 124 | 14 | 113 | 6.96e-11 | 59.7 |
| MS.gene08809.t1 | AT4G37480 | 39.062 | 64 | 39 | 0 | 29 | 92 | 58 | 121 | 7.78e-11 | 59.7 |
| MS.gene08809.t1 | AT1G59725 | 40.000 | 65 | 39 | 0 | 28 | 92 | 5 | 69 | 8.53e-11 | 59.3 |
| MS.gene08809.t1 | AT3G17830 | 40.789 | 76 | 42 | 1 | 29 | 104 | 65 | 137 | 9.19e-11 | 59.3 |
Find 59 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 4.2:+13076037 | MS.gene08809:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 4.2:-13079162 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | 4.2:-13076065 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 4.2:+13076160 | MS.gene08809:CDS |
| TTGAAGGTGGCTTTAAGCTT+TGG | 0.356103 | 4.2:-13075993 | None:intergenic |
| TGAAGGTGGCTTTAAGCTTT+GGG | 0.376965 | 4.2:-13075992 | None:intergenic |
| GGATGACCCGAATGAGATTC+GGG | 0.401935 | 4.2:-13075967 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | 4.2:+13075960 | None:intergenic |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 4.2:+13076064 | MS.gene08809:CDS |
| CGCCACAACGCCGTCGTTGA+AGG | 0.409679 | 4.2:-13076009 | None:intergenic |
| AGGATGACCCGAATGAGATT+CGG | 0.411788 | 4.2:-13075968 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | 4.2:-13076072 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | 4.2:+13076280 | MS.gene08809:CDS |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 4.2:+13076198 | MS.gene08809:CDS |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | 4.2:+13076130 | MS.gene08809:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 4.2:-13075961 | None:intergenic |
| CTCGAATACGCCAGCAGAGG+GGG | 0.466457 | 4.2:+13079221 | MS.gene08809:CDS |
| TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | 4.2:+13079102 | MS.gene08809:intron |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | 4.2:+13075961 | None:intergenic |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | 4.2:-13076212 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 4.2:+13076038 | MS.gene08809:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 4.2:+13076166 | MS.gene08809:CDS |
| TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | 4.2:+13079110 | MS.gene08809:CDS |
| CAACGACGGCGTTGTGGCGG+AGG | 0.487062 | 4.2:+13076013 | MS.gene08809:CDS |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | 4.2:+13076223 | MS.gene08809:CDS |
| CGATCCGGTGGTGAAACATC+CGG | 0.500626 | 4.2:-13076128 | None:intergenic |
| GGCTCGAATACGCCAGCAGA+GGG | 0.500705 | 4.2:+13079219 | MS.gene08809:CDS |
| GTATACTCTTCCACCCGATC+CGG | 0.515930 | 4.2:-13076143 | None:intergenic |
| TCGAATACGCCAGCAGAGGG+GGG | 0.524687 | 4.2:+13079222 | MS.gene08809:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 4.2:-13076127 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 4.2:-13075960 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 4.2:+13079171 | MS.gene08809:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 4.2:+13076053 | MS.gene08809:CDS |
| CGAATACGCCAGCAGAGGGG+GGG | 0.536867 | 4.2:+13079223 | MS.gene08809:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 4.2:+13076129 | MS.gene08809:CDS |
| CTTAAAGCCACCTTCAACGA+CGG | 0.544649 | 4.2:+13075999 | MS.gene08809:CDS |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 4.2:-13076165 | None:intergenic |
| CGGCTCGAATACGCCAGCAG+AGG | 0.554435 | 4.2:+13079218 | MS.gene08809:CDS |
| CACCTTCAACGACGGCGTTG+TGG | 0.564399 | 4.2:+13076007 | MS.gene08809:CDS |
| GGTGGCTTTAAGCTTTGGGA+AGG | 0.570592 | 4.2:-13075988 | None:intergenic |
| ACGGCGTTGTGGCGGAGGAA+CGG | 0.572751 | 4.2:+13076018 | MS.gene08809:CDS |
| TGCTGCTGATAATACGTCAT+GGG | 0.573906 | 4.2:+13079195 | MS.gene08809:CDS |
| CACAACGCCGTCGTTGAAGG+TGG | 0.575442 | 4.2:-13076006 | None:intergenic |
| CTTCAACGACGGCGTTGTGG+CGG | 0.582226 | 4.2:+13076010 | MS.gene08809:CDS |
| TACTCTTCCACCCGATCCGG+TGG | 0.594060 | 4.2:-13076140 | None:intergenic |
| AGGATGAATGGAAATCTCGT+TGG | 0.596088 | 4.2:+13079122 | MS.gene08809:CDS |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 4.2:+13079165 | MS.gene08809:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 4.2:+13076169 | MS.gene08809:CDS |
| TGTTTCACCACCGGATCGGG+TGG | 0.605740 | 4.2:+13076133 | MS.gene08809:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 4.2:+13076231 | MS.gene08809:CDS |
| CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | 4.2:+13079139 | MS.gene08809:CDS |
| GCTCGAATACGCCAGCAGAG+GGG | 0.614172 | 4.2:+13079220 | MS.gene08809:CDS |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | 4.2:+13076230 | MS.gene08809:CDS |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 4.2:+13076124 | MS.gene08809:CDS |
| TGCTGATAATACGTCATGGG+CGG | 0.647620 | 4.2:+13079198 | MS.gene08809:CDS |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 4.2:+13076201 | MS.gene08809:CDS |
| ATGCTGCTGATAATACGTCA+TGG | 0.662327 | 4.2:+13079194 | MS.gene08809:CDS |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 4.2:+13076109 | MS.gene08809:CDS |
| GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | 4.2:+13076150 | MS.gene08809:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATATAATTGATTA+TGG | - | chr4.2:13078343-13078362 | None:intergenic | 10.0% |
| !! | GAATATATTATAAATTGTTT+CGG | - | chr4.2:13078207-13078226 | None:intergenic | 10.0% |
| !! | GTTATTAATTATTATTTGTT+AGG | + | chr4.2:13076943-13076962 | MS.gene08809:intron | 10.0% |
| !! | TTATGAAATATAAGAAAAAA+TGG | - | chr4.2:13076326-13076345 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTTTCATTGAAT+AGG | + | chr4.2:13079008-13079027 | MS.gene08809:intron | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | + | chr4.2:13078343-13078362 | MS.gene08809:intron | 10.0% |
| !! | AAAATATAATTGATTATGGA+AGG | - | chr4.2:13078339-13078358 | None:intergenic | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | - | chr4.2:13078338-13078357 | None:intergenic | 15.0% |
| !! | CTTATAATGAAATAAAAAAC+AGG | + | chr4.2:13078226-13078245 | MS.gene08809:intron | 15.0% |
| !! | GATTGTTAAGAAATTTAAAA+TGG | + | chr4.2:13078625-13078644 | MS.gene08809:intron | 15.0% |
| !!! | ATTTGATTTATACATACTAT+CGG | - | chr4.2:13076588-13076607 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTCTTCTTATG+GGG | + | chr4.2:13076353-13076372 | MS.gene08809:intron | 15.0% |
| !!! | GACAACTTTTTAATAATAAT+TGG | + | chr4.2:13078686-13078705 | MS.gene08809:intron | 15.0% |
| !!! | GATTTTTTTTTTCTTCTTAT+GGG | + | chr4.2:13076352-13076371 | MS.gene08809:intron | 15.0% |
| !!! | TGATTTTTTTTTTCTTCTTA+TGG | + | chr4.2:13076351-13076370 | MS.gene08809:intron | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | + | chr4.2:13076423-13076442 | MS.gene08809:intron | 15.0% |
| !! | TAAGTTATTGCTTTCTTATT+AGG | + | chr4.2:13079087-13079106 | MS.gene08809:intron | 20.0% |
| !! | TATCGTCATTATTTATTGAT+TGG | - | chr4.2:13078781-13078800 | None:intergenic | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | + | chr4.2:13076513-13076532 | MS.gene08809:intron | 20.0% |
| !! | TTACTTTGATTCTTCTTAAA+AGG | - | chr4.2:13078131-13078150 | None:intergenic | 20.0% |
| !! | TTGCTTAAAAATAGCATATA+TGG | + | chr4.2:13077274-13077293 | MS.gene08809:intron | 20.0% |
| !!! | AAATTATTTTCCTACTGATT+TGG | + | chr4.2:13077834-13077853 | MS.gene08809:intron | 20.0% |
| !!! | AGTTGTTTTAAATGTTAAGT+TGG | + | chr4.2:13078538-13078557 | MS.gene08809:intron | 20.0% |
| !!! | ATAAATTGTAAACTTTTCAG+GGG | - | chr4.2:13077522-13077541 | None:intergenic | 20.0% |
| !!! | ATCGTCATTATTTATTGATT+GGG | - | chr4.2:13078780-13078799 | None:intergenic | 20.0% |
| !!! | ATGTTAATATTAGTTTTGCT+TGG | + | chr4.2:13077304-13077323 | MS.gene08809:intron | 20.0% |
| !!! | CAGTTTTTTGTGATAAAAAA+TGG | - | chr4.2:13078077-13078096 | None:intergenic | 20.0% |
| !!! | GATAAATTGTAAACTTTTCA+GGG | - | chr4.2:13077523-13077542 | None:intergenic | 20.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | + | chr4.2:13076485-13076504 | MS.gene08809:intron | 20.0% |
| !!! | TAAATTTTGATTACATGACA+TGG | + | chr4.2:13077636-13077655 | MS.gene08809:intron | 20.0% |
| !!! | TGATAAATTGTAAACTTTTC+AGG | - | chr4.2:13077524-13077543 | None:intergenic | 20.0% |
| !!! | TGTTAATATTAGTTTTGCTT+GGG | + | chr4.2:13077305-13077324 | MS.gene08809:intron | 20.0% |
| !!! | TTTTTGAACTGATATATGAT+TGG | + | chr4.2:13076538-13076557 | MS.gene08809:intron | 20.0% |
| ! | AAAGCTTCTCAAACAAAAAA+AGG | - | chr4.2:13077068-13077087 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | - | chr4.2:13076982-13077001 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.2:13076752-13076771 | MS.gene08809:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | - | chr4.2:13076981-13077000 | None:intergenic | 25.0% |
| ! | ACAATTTATCAATCTGTTCA+GGG | + | chr4.2:13077533-13077552 | MS.gene08809:intron | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | + | chr4.2:13077481-13077500 | MS.gene08809:intron | 25.0% |
| ! | ATAATATAATCCCTGAATGA+TGG | + | chr4.2:13078878-13078897 | MS.gene08809:intron | 25.0% |
| ! | GAGCAAATATATATCAAAAC+CGG | + | chr4.2:13077866-13077885 | MS.gene08809:intron | 25.0% |
| ! | GATTATGTATGATAGAGATA+TGG | + | chr4.2:13076223-13076242 | MS.gene08809:CDS | 25.0% |
| ! | TACAATTTATCAATCTGTTC+AGG | + | chr4.2:13077532-13077551 | MS.gene08809:intron | 25.0% |
| ! | TACCATGCAAAATCAATTTA+AGG | - | chr4.2:13077158-13077177 | None:intergenic | 25.0% |
| ! | TTAAAATGGTAAGTTTGTCT+TGG | + | chr4.2:13078639-13078658 | MS.gene08809:intron | 25.0% |
| ! | TTAAACTAATCACATAATCC+AGG | + | chr4.2:13078590-13078609 | MS.gene08809:intron | 25.0% |
| ! | TTGATATATATTTGCTCCTA+AGG | - | chr4.2:13077863-13077882 | None:intergenic | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | + | chr4.2:13078001-13078020 | MS.gene08809:intron | 25.0% |
| !! | TTGTCAAGTTAGATCATTTT+TGG | + | chr4.2:13076611-13076630 | MS.gene08809:intron | 25.0% |
| !!! | AGTATCGAAATATTTTAAGG+GGG | + | chr4.2:13077898-13077917 | MS.gene08809:intron | 25.0% |
| !!! | GAGTATCGAAATATTTTAAG+GGG | + | chr4.2:13077897-13077916 | MS.gene08809:intron | 25.0% |
| !!! | GGAGTATCGAAATATTTTAA+GGG | + | chr4.2:13077896-13077915 | MS.gene08809:intron | 25.0% |
| !!! | TATTTTTTTCTCCCTTTTTG+AGG | + | chr4.2:13076967-13076986 | MS.gene08809:intron | 25.0% |
| !!! | TCCTTAAATTGATTTTGCAT+GGG | + | chr4.2:13077154-13077173 | MS.gene08809:intron | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | + | chr4.2:13077068-13077087 | MS.gene08809:intron | 25.0% |
| AACACAAGAATCATCTATGA+TGG | - | chr4.2:13077214-13077233 | None:intergenic | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | - | chr4.2:13078388-13078407 | None:intergenic | 30.0% | |
| ATATATCAAAACCGGATTGT+AGG | + | chr4.2:13077874-13077893 | MS.gene08809:intron | 30.0% | |
| ATGATTCATTACCATCATTC+AGG | - | chr4.2:13078892-13078911 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | + | chr4.2:13076280-13076299 | MS.gene08809:CDS | 30.0% | |
| ATTTGAACCTAAGAGAAAGA+AGG | - | chr4.2:13077996-13078015 | None:intergenic | 30.0% | |
| ATTTGTTTAATCGTGACTTC+TGG | + | chr4.2:13077927-13077946 | MS.gene08809:intron | 30.0% | |
| CACACAAAAGGAAATGAATA+TGG | - | chr4.2:13078455-13078474 | None:intergenic | 30.0% | |
| GAAATAAAAAACAGGCAACT+TGG | + | chr4.2:13078234-13078253 | MS.gene08809:intron | 30.0% | |
| TACATACTATCGGTGTAAAA+AGG | - | chr4.2:13076578-13076597 | None:intergenic | 30.0% | |
| TATATCAAAACCGGATTGTA+GGG | + | chr4.2:13077875-13077894 | MS.gene08809:intron | 30.0% | |
| TGATTCATTACCATCATTCA+GGG | - | chr4.2:13078891-13078910 | None:intergenic | 30.0% | |
| TGTGGTTTCATCATCATTTA+AGG | + | chr4.2:13077659-13077678 | MS.gene08809:intron | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | + | chr4.2:13078019-13078038 | MS.gene08809:intron | 30.0% | |
| TTATTAGGTGAGTGAACAAA+AGG | + | chr4.2:13079102-13079121 | MS.gene08809:intron | 30.0% | |
| TTATTGTGCAACTTCTTTGT+TGG | + | chr4.2:13077027-13077046 | MS.gene08809:intron | 30.0% | |
| TTGCTTGTATGAGTATGTTA+CGG | + | chr4.2:13078403-13078422 | MS.gene08809:intron | 30.0% | |
| TTTCATTGAATAGGACCTTT+GGG | + | chr4.2:13079017-13079036 | MS.gene08809:intron | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | - | chr4.2:13076075-13076094 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | + | chr4.2:13076717-13076736 | MS.gene08809:intron | 30.0% |
| ! | AGTTAGTTTGATGTAGAACT+TGG | - | chr4.2:13077346-13077365 | None:intergenic | 30.0% |
| ! | TTTTCATTGAATAGGACCTT+TGG | + | chr4.2:13079016-13079035 | MS.gene08809:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | + | chr4.2:13077155-13077174 | MS.gene08809:intron | 30.0% |
| !! | GTCCTTAAATTGATTTTGCA+TGG | + | chr4.2:13077153-13077172 | MS.gene08809:intron | 30.0% |
| !!! | GGGAGTATCGAAATATTTTA+AGG | + | chr4.2:13077895-13077914 | MS.gene08809:intron | 30.0% |
| !!! | TTTGTTTTGGAATTAGTGTG+TGG | + | chr4.2:13076436-13076455 | MS.gene08809:intron | 30.0% |
| AAAAACAGGCAACTTGGTTT+AGG | + | chr4.2:13078240-13078259 | MS.gene08809:intron | 35.0% | |
| AAAACAATGAAGGGTCACTT+TGG | - | chr4.2:13076861-13076880 | None:intergenic | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | + | chr4.2:13078241-13078260 | MS.gene08809:intron | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | + | chr4.2:13076198-13076217 | MS.gene08809:CDS | 35.0% | |
| AACACAAGAATCATCCATGA+TGG | - | chr4.2:13077129-13077148 | None:intergenic | 35.0% | |
| AAGCTTTCACAGAACTGAAA+TGG | + | chr4.2:13077761-13077780 | MS.gene08809:intron | 35.0% | |
| ACAATCAGAAAACAACATCC+TGG | - | chr4.2:13078611-13078630 | None:intergenic | 35.0% | |
| ACTATCTCCTTCTTTCTCTT+AGG | + | chr4.2:13077986-13078005 | MS.gene08809:intron | 35.0% | |
| ATCAAGCACCAGTAAATATC+AGG | - | chr4.2:13077955-13077974 | None:intergenic | 35.0% | |
| ATCATGCCTTCAAAAGAGAT+AGG | + | chr4.2:13078907-13078926 | MS.gene08809:intron | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | + | chr4.2:13076231-13076250 | MS.gene08809:CDS | 35.0% | |
| ATGGTATCTCAAGCAAGTTT+AGG | + | chr4.2:13077172-13077191 | MS.gene08809:intron | 35.0% | |
| CATTTGAAGAAGACTCATCA+AGG | + | chr4.2:13077455-13077474 | MS.gene08809:intron | 35.0% | |
| CCCCATGCAAAATCAATTTA+AGG | - | chr4.2:13077243-13077262 | None:intergenic | 35.0% | |
| CGTTGACATATACACACAAA+AGG | - | chr4.2:13078467-13078486 | None:intergenic | 35.0% | |
| GAAAGAAGGAGATAGTACAA+AGG | - | chr4.2:13077982-13078001 | None:intergenic | 35.0% | |
| GTATACCAAGAGGTTTATTC+AGG | + | chr4.2:13076160-13076179 | MS.gene08809:CDS | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | + | chr4.2:13076230-13076249 | MS.gene08809:CDS | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | - | chr4.2:13076215-13076234 | None:intergenic | 35.0% | |
| TCATGCCTTCAAAAGAGATA+GGG | + | chr4.2:13078908-13078927 | MS.gene08809:intron | 35.0% | |
| TCCCAGATGAAAACAATGAA+GGG | - | chr4.2:13076870-13076889 | None:intergenic | 35.0% | |
| TGAGTGAACAAAAGGATGAA+TGG | + | chr4.2:13079110-13079129 | MS.gene08809:CDS | 35.0% | |
| TTCATTGAATAGGACCTTTG+GGG | + | chr4.2:13079018-13079037 | MS.gene08809:intron | 35.0% | |
| TTTGATTACATGACATGGTG+TGG | + | chr4.2:13077641-13077660 | MS.gene08809:intron | 35.0% | |
| ! | AATGTCCCTATCTCTTTTGA+AGG | - | chr4.2:13078916-13078935 | None:intergenic | 35.0% |
| ! | ACCCTTCATTGTTTTCATCT+GGG | + | chr4.2:13076866-13076885 | MS.gene08809:intron | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | + | chr4.2:13077112-13077131 | MS.gene08809:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | + | chr4.2:13077001-13077020 | MS.gene08809:intron | 35.0% |
| ! | TTCATTGTTTTCATCTGGGA+GGG | + | chr4.2:13076870-13076889 | MS.gene08809:intron | 35.0% |
| ! | TTTGTCAAGGTTCTGATTTG+TGG | + | chr4.2:13076897-13076916 | MS.gene08809:intron | 35.0% |
| !! | AGTAACTTGTTCAGTGTTTG+TGG | - | chr4.2:13078507-13078526 | None:intergenic | 35.0% |
| !! | AGTACATTTTAAGTGTGCTG+TGG | + | chr4.2:13078175-13078194 | MS.gene08809:intron | 35.0% |
| !! | GTGTAACTGACTTACGTTTT+GGG | + | chr4.2:13078263-13078282 | MS.gene08809:intron | 35.0% |
| !! | TTATTTTGCAGTGGAAAACC+CGG | - | chr4.2:13077577-13077596 | None:intergenic | 35.0% |
| !! | TTCTGGTTCCTGATATTTAC+TGG | + | chr4.2:13077944-13077963 | MS.gene08809:intron | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | - | chr4.2:13077586-13077605 | None:intergenic | 35.0% |
| AAGAAGTGATAGCAAGGTCA+TGG | + | chr4.2:13079171-13079190 | MS.gene08809:CDS | 40.0% | |
| AGGATGAATGGAAATCTCGT+TGG | + | chr4.2:13079122-13079141 | MS.gene08809:CDS | 40.0% | |
| ATGCTGCTGATAATACGTCA+TGG | + | chr4.2:13079194-13079213 | MS.gene08809:CDS | 40.0% | |
| ATTGAATTGCGACCACAATG+TGG | - | chr4.2:13077704-13077723 | None:intergenic | 40.0% | |
| CCTAAGGTAACCAAATCAGT+AGG | - | chr4.2:13077847-13077866 | None:intergenic | 40.0% | |
| CTCCCAGATGAAAACAATGA+AGG | - | chr4.2:13076871-13076890 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | + | chr4.2:13079165-13079184 | MS.gene08809:CDS | 40.0% | |
| GTAGAGCTTATGACTGAAAC+CGG | + | chr4.2:13077555-13077574 | MS.gene08809:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | + | chr4.2:13077556-13077575 | MS.gene08809:intron | 40.0% | |
| TCATTGAATAGGACCTTTGG+GGG | + | chr4.2:13079019-13079038 | MS.gene08809:intron | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | - | chr4.2:13079165-13079184 | None:intergenic | 40.0% | |
| TGCTGCTGATAATACGTCAT+GGG | + | chr4.2:13079195-13079214 | MS.gene08809:CDS | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | + | chr4.2:13077676-13077695 | MS.gene08809:intron | 40.0% | |
| TTTCGATACTCCCTACAATC+CGG | - | chr4.2:13077888-13077907 | None:intergenic | 40.0% | |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | - | chr4.2:13078504-13078523 | None:intergenic | 40.0% |
| ! | CTTCATTGTTTTCATCTGGG+AGG | + | chr4.2:13076869-13076888 | MS.gene08809:intron | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | + | chr4.2:13076865-13076884 | MS.gene08809:intron | 40.0% |
| !! | ACTTGCAAGAAAGTATCACC+CGG | + | chr4.2:13076109-13076128 | MS.gene08809:CDS | 40.0% |
| !! | CCTACTGATTTGGTTACCTT+AGG | + | chr4.2:13077844-13077863 | MS.gene08809:intron | 40.0% |
| !! | GGTGTAACTGACTTACGTTT+TGG | + | chr4.2:13078262-13078281 | MS.gene08809:intron | 40.0% |
| !! | TGAAGGTGGCTTTAAGCTTT+GGG | - | chr4.2:13075995-13076014 | None:intergenic | 40.0% |
| !! | TTGAAGGTGGCTTTAAGCTT+TGG | - | chr4.2:13075996-13076015 | None:intergenic | 40.0% |
| AATGTGGAGCCAAGATAAGG+AGG | - | chr4.2:13077688-13077707 | None:intergenic | 45.0% | |
| ACCAGAATCCGGTTCATTGA+TGG | + | chr4.2:13076064-13076083 | MS.gene08809:CDS | 45.0% | |
| AGGATGACCCGAATGAGATT+CGG | - | chr4.2:13075971-13075990 | None:intergenic | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | + | chr4.2:13076166-13076185 | MS.gene08809:CDS | 45.0% | |
| CACAATGTGGAGCCAAGATA+AGG | - | chr4.2:13077691-13077710 | None:intergenic | 45.0% | |
| CATTGAATAGGACCTTTGGG+GGG | + | chr4.2:13079020-13079039 | MS.gene08809:intron | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | - | chr4.2:13076168-13076187 | None:intergenic | 45.0% | |
| CTTAAAGCCACCTTCAACGA+CGG | + | chr4.2:13075999-13076018 | MS.gene08809:CDS | 45.0% | |
| CTTATCTTGGCTCCACATTG+TGG | + | chr4.2:13077689-13077708 | MS.gene08809:intron | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | + | chr4.2:13076201-13076220 | MS.gene08809:CDS | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | - | chr4.2:13076068-13076087 | None:intergenic | 45.0% | |
| TGCTGATAATACGTCATGGG+CGG | + | chr4.2:13079198-13079217 | MS.gene08809:CDS | 45.0% | |
| !!! | TTAATAAATTTTCATAATTT+TGG | - | chr4.2:13077729-13077748 | None:intergenic | 5.0% |
| ACGGAGCTTCTACGATCTTC+TGG | + | chr4.2:13076037-13076056 | MS.gene08809:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | + | chr4.2:13076038-13076057 | MS.gene08809:CDS | 50.0% | |
| CGTTGGCAATCTCAACTCGA+TGG | + | chr4.2:13079139-13079158 | MS.gene08809:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | + | chr4.2:13076053-13076072 | MS.gene08809:CDS | 50.0% | |
| GAGGTTTATTCAGGTGCAGG+AGG | + | chr4.2:13076169-13076188 | MS.gene08809:CDS | 50.0% | |
| GGATGACCCGAATGAGATTC+GGG | - | chr4.2:13075970-13075989 | None:intergenic | 50.0% | |
| GTATACTCTTCCACCCGATC+CGG | - | chr4.2:13076146-13076165 | None:intergenic | 50.0% | |
| ! | AATAGGACCTTTGGGGGGAT+TGG | + | chr4.2:13079025-13079044 | MS.gene08809:intron | 50.0% |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | - | chr4.2:13078495-13078514 | None:intergenic | 50.0% |
| ! | GGGTGGAAGAGTATACCAAG+AGG | + | chr4.2:13076150-13076169 | MS.gene08809:CDS | 50.0% |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | + | chr4.2:13076884-13076903 | MS.gene08809:intron | 50.0% |
| !! | GGTGGCTTTAAGCTTTGGGA+AGG | - | chr4.2:13075991-13076010 | None:intergenic | 50.0% |
| CGATCCGGTGGTGAAACATC+CGG | - | chr4.2:13076131-13076150 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | + | chr4.2:13076129-13076148 | MS.gene08809:CDS | 55.0% | |
| CTTCTAGCCAATCCCCCCAA+AGG | - | chr4.2:13079035-13079054 | None:intergenic | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | - | chr4.2:13076130-13076149 | None:intergenic | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | + | chr4.2:13076130-13076149 | MS.gene08809:CDS | 55.0% | |
| TCACCCGGATGTTTCACCAC+CGG | + | chr4.2:13076124-13076143 | MS.gene08809:CDS | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | - | chr4.2:13078496-13078515 | None:intergenic | 55.0% |
| CACAACGCCGTCGTTGAAGG+TGG | - | chr4.2:13076009-13076028 | None:intergenic | 60.0% | |
| CACCTTCAACGACGGCGTTG+TGG | + | chr4.2:13076007-13076026 | MS.gene08809:CDS | 60.0% | |
| CTCGAATACGCCAGCAGAGG+GGG | + | chr4.2:13079221-13079240 | MS.gene08809:CDS | 60.0% | |
| CTTCAACGACGGCGTTGTGG+CGG | + | chr4.2:13076010-13076029 | MS.gene08809:CDS | 60.0% | |
| GCTCGAATACGCCAGCAGAG+GGG | + | chr4.2:13079220-13079239 | MS.gene08809:CDS | 60.0% | |
| GGCTCGAATACGCCAGCAGA+GGG | + | chr4.2:13079219-13079238 | MS.gene08809:CDS | 60.0% | |
| TACTCTTCCACCCGATCCGG+TGG | - | chr4.2:13076143-13076162 | None:intergenic | 60.0% | |
| TCGAATACGCCAGCAGAGGG+GGG | + | chr4.2:13079222-13079241 | MS.gene08809:CDS | 60.0% | |
| TGTTTCACCACCGGATCGGG+TGG | + | chr4.2:13076133-13076152 | MS.gene08809:CDS | 60.0% | |
| CGAATACGCCAGCAGAGGGG+GGG | + | chr4.2:13079223-13079242 | MS.gene08809:CDS | 65.0% | |
| CGCCACAACGCCGTCGTTGA+AGG | - | chr4.2:13076012-13076031 | None:intergenic | 65.0% | |
| CGGCTCGAATACGCCAGCAG+AGG | + | chr4.2:13079218-13079237 | MS.gene08809:CDS | 65.0% | |
| ! | ACGGCGTTGTGGCGGAGGAA+CGG | + | chr4.2:13076018-13076037 | MS.gene08809:CDS | 65.0% |
| CAACGACGGCGTTGTGGCGG+AGG | + | chr4.2:13076013-13076032 | MS.gene08809:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 13075963 | 13079252 | 13075963 | ID=MS.gene08809 |
| chr4.2 | mRNA | 13075963 | 13079252 | 13075963 | ID=MS.gene08809.t1;Parent=MS.gene08809 |
| chr4.2 | exon | 13075963 | 13076301 | 13075963 | ID=MS.gene08809.t1.exon1;Parent=MS.gene08809.t1 |
| chr4.2 | CDS | 13075963 | 13076301 | 13075963 | ID=cds.MS.gene08809.t1;Parent=MS.gene08809.t1 |
| chr4.2 | exon | 13079109 | 13079252 | 13079109 | ID=MS.gene08809.t1.exon2;Parent=MS.gene08809.t1 |
| chr4.2 | CDS | 13079109 | 13079252 | 13079109 | ID=cds.MS.gene08809.t1;Parent=MS.gene08809.t1 |
| Gene Sequence |
| Protein sequence |
