AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060982


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060982.t1 MTR_2g072470 98.812 421 3 1 1 419 1 421 0.0 851
MS.gene060982.t1 MTR_4g095055 36.292 383 222 6 39 399 9 391 2.00e-76 243
MS.gene060982.t1 MTR_4g095055 35.192 287 164 6 39 303 9 295 7.81e-46 165
MS.gene060982.t1 MTR_4g095055 39.583 96 58 0 304 399 369 464 6.59e-17 82.8
MS.gene060982.t1 MTR_8g078070 37.349 249 136 7 111 346 92 333 4.26e-35 133
MS.gene060982.t1 MTR_5g019460 37.008 254 142 6 111 352 91 338 1.32e-34 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060982.t1 AT1G17050 73.352 364 97 0 55 418 53 416 0.0 548
MS.gene060982.t1 AT1G78510 67.064 419 122 3 2 418 1 405 0.0 545
MS.gene060982.t1 AT1G78510 78.743 334 71 0 85 418 33 366 0.0 540
MS.gene060982.t1 AT2G34630 39.809 314 176 3 101 401 85 398 1.69e-72 234
MS.gene060982.t1 AT2G34630 40.067 297 165 3 118 401 1 297 4.26e-69 221
MS.gene060982.t1 AT4G36810 41.176 255 126 9 109 346 85 332 4.67e-38 141
MS.gene060982.t1 AT2G18620 40.152 264 137 9 111 360 66 322 5.03e-36 135
MS.gene060982.t1 AT2G18640 38.000 250 137 7 109 346 90 333 2.43e-34 131
MS.gene060982.t1 AT3G14510 39.331 239 125 6 136 360 27 259 2.94e-33 126
MS.gene060982.t1 AT3G20160 35.827 254 140 8 109 346 59 305 1.63e-31 123
MS.gene060982.t1 AT3G32040 35.955 267 150 7 109 360 75 335 3.65e-29 117
MS.gene060982.t1 AT2G23800 35.857 251 141 9 109 346 94 337 2.00e-28 115
MS.gene060982.t1 AT3G29430 35.955 267 150 7 109 360 72 332 1.10e-27 113
MS.gene060982.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene060982.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene060982.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene060982.t1 AT3G14530 36.330 267 149 8 109 360 75 335 5.55e-27 111
MS.gene060982.t1 AT3G20160 33.603 247 127 8 109 346 59 277 1.24e-26 109
MS.gene060982.t1 AT1G49530 32.444 225 130 6 137 345 78 296 1.84e-22 97.8

Find 73 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTATTTGGTGAAAT+AGG 0.152420 2.3:-23945070 None:intergenic
TCAATATCGTGTTTCTTCTA+TGG 0.220495 2.3:+23943792 MS.gene060982:CDS
GAGACCAGCTCTTGTGTTCT+TGG 0.226567 2.3:+23945676 MS.gene060982:CDS
ACTACTTCAAACAACCTATT+TGG 0.233446 2.3:-23945079 None:intergenic
ACAACCTATTTGGTGAAATA+GGG 0.248193 2.3:-23945069 None:intergenic
GGCTAAACGTCGATGCTTTA+CGG 0.286782 2.3:-23945877 None:intergenic
TCACTAGCTTACCTCTTCTT+AGG 0.317476 2.3:-23945962 None:intergenic
TGGAAATGGAGCTCGTAAAT+TGG 0.324226 2.3:+23943744 MS.gene060982:CDS
GAAACTGTTCATCAAATGTT+TGG 0.338601 2.3:+23946426 MS.gene060982:CDS
CCAATATGTCGTCGACTACT+TGG 0.375193 2.3:-23947058 None:intergenic
CAACCCCTATTTCACCAAAT+AGG 0.381053 2.3:+23945065 MS.gene060982:CDS
TCAATGATATCCCTCAATTT+CGG 0.393056 2.3:-23947179 None:intergenic
CCAAGTAGTCGACGACATAT+TGG 0.395171 2.3:+23947058 MS.gene060982:CDS
TTTGGTGAAATAGGGGTTGC+TGG 0.395241 2.3:-23945061 None:intergenic
TGGAGCGGTCAGGTTACCTT+TGG 0.414371 2.3:-23947132 None:intergenic
AATTCTAAAGGGTGTGGAAA+TGG 0.428535 2.3:+23943730 MS.gene060982:CDS
GAGTCTGAATTTAGCGAGAT+TGG 0.432083 2.3:+23947200 MS.gene060982:CDS
GCAATTAAAGACCTTGCAAA+AGG 0.452757 2.3:+23945019 MS.gene060982:CDS
TCAGCTGCAGATATTAAAAC+TGG 0.453325 2.3:-23945623 None:intergenic
TATGCTAAGGTGAATTCTAA+AGG 0.455161 2.3:+23943718 MS.gene060982:CDS
TTTCACACTGGCAGCAATCA+AGG 0.458122 2.3:-23946955 None:intergenic
ACCGAGAAAATGTTCGAATA+CGG 0.464949 2.3:+23947014 MS.gene060982:CDS
TTGGCGAGGTCCGTGCCAGC+AGG 0.477676 2.3:-23947113 None:intergenic
TGGAGAAAGAACCGAAATTG+AGG 0.478658 2.3:+23947168 MS.gene060982:CDS
GAGCAACTTGGAAAGCCTGC+TGG 0.484511 2.3:+23947098 MS.gene060982:CDS
ACTTGGAAAGCCTGCTGGCA+CGG 0.485083 2.3:+23947103 MS.gene060982:CDS
ATCAAGTTGGTCAAGAGTTG+TGG 0.492995 2.3:+23947239 MS.gene060982:CDS
TTGATTGCTGCCAGTGTGAA+AGG 0.493597 2.3:+23946957 MS.gene060982:CDS
ACAAGAGTGGCAGTGCTGGC+TGG 0.494391 2.3:+23946450 MS.gene060982:CDS
ACGCAATCGGCAGAGCAACT+TGG 0.497280 2.3:+23947086 MS.gene060982:CDS
TTCGAATACGGGAAGAATCT+CGG 0.498347 2.3:+23947026 MS.gene060982:CDS
ATGAATCATTTCAACTATCT+CGG 0.499817 2.3:-23945898 None:intergenic
ATGCTAAGGTGAATTCTAAA+GGG 0.500417 2.3:+23943719 MS.gene060982:CDS
TGGAACAAGAGTGGCAGTGC+TGG 0.503897 2.3:+23946446 MS.gene060982:CDS
ATTGAGTGTTTGAAGATCAT+CGG 0.505570 2.3:-23945104 None:intergenic
GGAGAAAGAACCGAAATTGA+GGG 0.507533 2.3:+23947169 MS.gene060982:CDS
AATTGGTTTGTTGTAAGAAG+AGG 0.509786 2.3:+23943761 MS.gene060982:CDS
CATATTGGATTTCACGCAAT+CGG 0.510526 2.3:+23947073 MS.gene060982:CDS
TCTTTAGTGCTGGTGGGAAG+AGG 0.511599 2.3:+23945651 MS.gene060982:CDS
ACTGCAGAGCCTACTTTGAA+TGG 0.516676 2.3:+23943817 MS.gene060982:CDS
TCATGTTTGCACAATCATCA+TGG 0.521316 2.3:+23946478 MS.gene060982:CDS
ATGCCTATGAAAAGAAGCAT+TGG 0.522548 2.3:-23943683 None:intergenic
GGATGCTCTTGATAGATTGT+AGG 0.526067 2.3:+23945590 MS.gene060982:intron
CCGAGAAAATGTTCGAATAC+GGG 0.527115 2.3:+23947015 MS.gene060982:CDS
AGTCATTAAACTTATCAGCC+AGG 0.539916 2.3:+23946527 MS.gene060982:CDS
CAACCTATTTGGTGAAATAG+GGG 0.541722 2.3:-23945068 None:intergenic
AAGGTGAATTCTAAAGGGTG+TGG 0.545230 2.3:+23943724 MS.gene060982:CDS
TCAAGTTGGTCAAGAGTTGT+GGG 0.546195 2.3:+23947240 MS.gene060982:CDS
GACACCAAGAACACAAGAGC+TGG 0.548114 2.3:-23945680 None:intergenic
GCTGAGCAGATCTTTAGTGC+TGG 0.564731 2.3:+23945641 MS.gene060982:CDS
GAGCAGATCTTTAGTGCTGG+TGG 0.569958 2.3:+23945644 MS.gene060982:CDS
TCGTTTAGCTCTTGAGGACA+TGG 0.571941 2.3:+23947346 MS.gene060982:CDS
AGCAGATCTTTAGTGCTGGT+GGG 0.574274 2.3:+23945645 MS.gene060982:CDS
GATGAGAGTGACCTAAGAAG+AGG 0.576816 2.3:+23945951 MS.gene060982:CDS
AATCGAACGAGCACAAGAGT+TGG 0.579042 2.3:+23947265 MS.gene060982:CDS
TGTGTATCGTTTAGCTCTTG+AGG 0.580344 2.3:+23947340 MS.gene060982:CDS
TGGTGACATATAATCTTCAA+AGG 0.582035 2.3:+23947366 MS.gene060982:CDS
GCTGGCACGGACCTCGCCAA+AGG 0.585708 2.3:+23947116 MS.gene060982:CDS
TGAAGTTAAGAATTATGCTA+AGG 0.586221 2.3:+23943705 MS.gene060982:CDS
CGGTCAGGTTACCTTTGGCG+AGG 0.592711 2.3:-23947127 None:intergenic
TCTTGATGAAGCGATCAAGT+TGG 0.602092 2.3:+23947226 MS.gene060982:CDS
TCAAATGTTTGGAACAAGAG+TGG 0.606800 2.3:+23946437 MS.gene060982:CDS
AGAGCGACCGCAGAACTACA+TGG 0.608016 2.3:+23945704 MS.gene060982:CDS
ATCACTGTACCATTCAAAGT+AGG 0.612430 2.3:-23943826 None:intergenic
TATGTCGTCGACTACTTGGA+AGG 0.615085 2.3:-23947054 None:intergenic
CTCAAGGCCATGTAGTTCTG+CGG 0.632644 2.3:-23945711 None:intergenic
GCTAAACGATACACACTAGG+AGG 0.638041 2.3:-23947332 None:intergenic
AACTGCCGCTCCTTTCACAC+TGG 0.639921 2.3:-23946967 None:intergenic
AGAGCTAAACGATACACACT+AGG 0.642583 2.3:-23947335 None:intergenic
AAGTTGGTCAAGAGTTGTGG+GGG 0.644966 2.3:+23947242 MS.gene060982:CDS
CAAGTTGGTCAAGAGTTGTG+GGG 0.662378 2.3:+23947241 MS.gene060982:CDS
CACACTGGCAGCAATCAAGG+AGG 0.699964 2.3:-23946952 None:intergenic
TGCTGCCAGTGTGAAAGGAG+CGG 0.704894 2.3:+23946962 MS.gene060982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAAAAAATCATTATTT+CGG + chr2.3:23946739-23946758 MS.gene060982:intron 10.0%
!!! TTTTATTTTTGCAAAATTTT+TGG + chr2.3:23946816-23946835 MS.gene060982:intron 10.0%
!!! TTTTTCTTTCAAATTATTAT+CGG + chr2.3:23944857-23944876 MS.gene060982:intron 10.0%
!! TAAAAACAATGTTTAGAAAA+TGG - chr2.3:23946801-23946820 None:intergenic 15.0%
!! TGATCAAATAAATTATAACA+TGG - chr2.3:23946114-23946133 None:intergenic 15.0%
!! AACTTTGACATTAAAAGATT+TGG + chr2.3:23944975-23944994 MS.gene060982:intron 20.0%
!! AAGTAATTGATATCCATTTA+AGG - chr2.3:23946676-23946695 None:intergenic 20.0%
!! AATATGAAAGAACATATGTT+AGG + chr2.3:23946639-23946658 MS.gene060982:intron 20.0%
!! AGTAATTGATATCCATTTAA+GGG - chr2.3:23946675-23946694 None:intergenic 20.0%
!! ATATGTTAATTTAACTGATG+AGG + chr2.3:23945569-23945588 MS.gene060982:intron 20.0%
!! CATCAGTTAAATTAACATAT+AGG - chr2.3:23945569-23945588 None:intergenic 20.0%
!! TGGTATATACATTCATAAAA+AGG + chr2.3:23946278-23946297 MS.gene060982:intron 20.0%
!!! AGATATTAAAACTGGATTTT+CGG - chr2.3:23945618-23945637 None:intergenic 20.0%
!!! AGTATGACAAAAATTGATTT+AGG - chr2.3:23946065-23946084 None:intergenic 20.0%
!!! CTAACTTGTTTTGAATTAAT+AGG + chr2.3:23946399-23946418 MS.gene060982:intron 20.0%
!!! GTATGACAAAAATTGATTTA+GGG - chr2.3:23946064-23946083 None:intergenic 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr2.3:23944228-23944247 None:intergenic 20.0%
!!! TCAATTTTTGTCATACTTTA+CGG + chr2.3:23946068-23946087 MS.gene060982:intron 20.0%
!!! TGATTTTTTTGGTAAAAACT+TGG + chr2.3:23943642-23943661 MS.gene060982:CDS 20.0%
!!! TTGTTTTGAATTAATAGGAA+AGG + chr2.3:23946404-23946423 MS.gene060982:intron 20.0%
! AAGCTAGTGATATTTAGAAA+TGG + chr2.3:23945975-23945994 MS.gene060982:intron 25.0%
! AATGGATATCAATTACTTCA+AGG + chr2.3:23946678-23946697 MS.gene060982:intron 25.0%
! AATTGAATGTTACATGTGTT+TGG - chr2.3:23944827-23944846 None:intergenic 25.0%
! ATATGTTCTTTCATATTCAC+CGG - chr2.3:23946636-23946655 None:intergenic 25.0%
! ATCTTGAAATGAATGATTTC+AGG + chr2.3:23945847-23945866 MS.gene060982:intron 25.0%
! ATGAATCATTTCAACTATCT+CGG - chr2.3:23945901-23945920 None:intergenic 25.0%
! ATGGATATCAATTACTTCAA+GGG + chr2.3:23946679-23946698 MS.gene060982:intron 25.0%
! ATGTATATACCAATTTGTCA+AGG - chr2.3:23946270-23946289 None:intergenic 25.0%
! CACTCATTAAATGATGTATT+TGG - chr2.3:23944203-23944222 None:intergenic 25.0%
! CCAAATTAAAACAAAGTTTC+AGG - chr2.3:23946166-23946185 None:intergenic 25.0%
! CCTGAAAATTCTATGTAAAT+AGG + chr2.3:23945803-23945822 MS.gene060982:intron 25.0%
! GTAATTGATATCCATTTAAG+GGG - chr2.3:23946674-23946693 None:intergenic 25.0%
! TAAGCAAAAATCAACTTTCT+AGG + chr2.3:23944146-23944165 MS.gene060982:intron 25.0%
! TAGATGGAAAAGAAAAAACA+AGG - chr2.3:23946335-23946354 None:intergenic 25.0%
! TCTGACAATTCTAATATTGT+CGG - chr2.3:23944456-23944475 None:intergenic 25.0%
! TCTTGAAATGAATGATTTCA+GGG + chr2.3:23945848-23945867 MS.gene060982:intron 25.0%
! TGAAGTTAAGAATTATGCTA+AGG + chr2.3:23943705-23943724 MS.gene060982:CDS 25.0%
! TGTGATATACAATTTAGTAC+AGG - chr2.3:23945402-23945421 None:intergenic 25.0%
!! ATTGTTCAGTGATTTTAAAC+AGG + chr2.3:23945284-23945303 MS.gene060982:intron 25.0%
!! CCTATTTACATAGAATTTTC+AGG - chr2.3:23945806-23945825 None:intergenic 25.0%
!! GTTTAAAATCACTGAACAAT+GGG - chr2.3:23945284-23945303 None:intergenic 25.0%
!! TAATAATTTGAAGTGTGTTG+TGG + chr2.3:23943866-23943885 MS.gene060982:intron 25.0%
!! TAATGACTTCAATGTTTTCA+AGG - chr2.3:23946515-23946534 None:intergenic 25.0%
!! TGACATTAAAAGATTTGGTT+TGG + chr2.3:23944980-23944999 MS.gene060982:intron 25.0%
!! TGTTTAAAATCACTGAACAA+TGG - chr2.3:23945285-23945304 None:intergenic 25.0%
!! TTCATTTTGTATGTACTATG+TGG + chr2.3:23944026-23944045 MS.gene060982:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2.3:23944238-23944257 MS.gene060982:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+TGG - chr2.3:23944257-23944238 None:intergenic 25.0%
!!! AGCAAAAGCATTGATTTTTT+TGG + chr2.3:23943631-23943650 MS.gene060982:CDS 25.0%
!!! ATTTGGTTTGGTTTTTGAAT+AGG + chr2.3:23944992-23945011 MS.gene060982:intron 25.0%
!!! CCTGAAACTTTGTTTTAATT+TGG + chr2.3:23946163-23946182 MS.gene060982:intron 25.0%
ACAATATCTGTCAATTCTGT+TGG - chr2.3:23944798-23944817 None:intergenic 30.0%
ACATTCATAAAAAGGCTTCA+AGG + chr2.3:23946286-23946305 MS.gene060982:intron 30.0%
ACTACTTCAAACAACCTATT+TGG - chr2.3:23945082-23945101 None:intergenic 30.0%
ATCAATTACTTCAAGGGATT+GGG + chr2.3:23946685-23946704 MS.gene060982:intron 30.0%
ATGCTAAGGTGAATTCTAAA+GGG + chr2.3:23943719-23943738 MS.gene060982:CDS 30.0%
ATTGAGTGTTTGAAGATCAT+CGG - chr2.3:23945107-23945126 None:intergenic 30.0%
CAGATTTGTATACTTACTCA+AGG - chr2.3:23945730-23945749 None:intergenic 30.0%
CTTTCAAATTATTATCGGTC+TGG + chr2.3:23944862-23944881 MS.gene060982:intron 30.0%
GAAACTGTTCATCAAATGTT+TGG + chr2.3:23946426-23946445 MS.gene060982:CDS 30.0%
GAAAGAACATATGTTAGGAT+AGG + chr2.3:23946644-23946663 MS.gene060982:intron 30.0%
GAATTGTCAGATATTGTTGA+AGG + chr2.3:23944581-23944600 MS.gene060982:intron 30.0%
GACACAATTATAAGCAACTA+AGG - chr2.3:23945194-23945213 None:intergenic 30.0%
GATTGAATGTTACATATGTC+TGG - chr2.3:23944607-23944626 None:intergenic 30.0%
GTATCAGAATTATCTGATAC+CGG + chr2.3:23943972-23943991 MS.gene060982:intron 30.0%
TATCAATTACTTCAAGGGAT+TGG + chr2.3:23946684-23946703 MS.gene060982:intron 30.0%
TATGCTAAGGTGAATTCTAA+AGG + chr2.3:23943718-23943737 MS.gene060982:CDS 30.0%
TATGTATCACCTTGACAAAT+TGG + chr2.3:23946258-23946277 MS.gene060982:intron 30.0%
TATGTTCTTTCATATTCACC+GGG - chr2.3:23946635-23946654 None:intergenic 30.0%
TCAATATCGTGTTTCTTCTA+TGG + chr2.3:23943792-23943811 MS.gene060982:CDS 30.0%
TCAATGATATCCCTCAATTT+CGG - chr2.3:23947182-23947201 None:intergenic 30.0%
TGATTGATGTTACATATGTC+TGG - chr2.3:23944491-23944510 None:intergenic 30.0%
TGGTGACATATAATCTTCAA+AGG + chr2.3:23947366-23947385 MS.gene060982:CDS 30.0%
TTCTCCAATGCAAAAATTAC+TGG - chr2.3:23947155-23947174 None:intergenic 30.0%
TTGTATGAGTCATTACATGT+CGG + chr2.3:23946205-23946224 MS.gene060982:intron 30.0%
TTTCAAATTCTGCTATGCTA+TGG + chr2.3:23945437-23945456 MS.gene060982:intron 30.0%
TTTCTGCTTATGATCATGTT+TGG + chr2.3:23946027-23946046 MS.gene060982:intron 30.0%
! AACAACCTATTTGGTGAAAT+AGG - chr2.3:23945073-23945092 None:intergenic 30.0%
! ACAACCTATTTGGTGAAATA+GGG - chr2.3:23945072-23945091 None:intergenic 30.0%
! GTATCTTATTGAAAGTGTGT+CGG + chr2.3:23943939-23943958 MS.gene060982:intron 30.0%
! GTGATTAAAGATTTTGCTAG+TGG + chr2.3:23946849-23946868 MS.gene060982:CDS 30.0%
! TATCTTATTGAAAGTGTGTC+GGG + chr2.3:23943940-23943959 MS.gene060982:intron 30.0%
! TTCATTTTGTACGTACTATG+TGG + chr2.3:23944629-23944648 MS.gene060982:intron 30.0%
! TTTTCAACGTTGTATGATGA+TGG - chr2.3:23946559-23946578 None:intergenic 30.0%
!! AATTGGTTTGTTGTAAGAAG+AGG + chr2.3:23943761-23943780 MS.gene060982:CDS 30.0%
!!! GTTCGTATTGATTTTAGAAG+TGG + chr2.3:23944952-23944971 MS.gene060982:intron 30.0%
AATACTCAAACAGACAAGAC+AGG - chr2.3:23945216-23945235 None:intergenic 35.0%
ACCGAGAAAATGTTCGAATA+CGG + chr2.3:23947014-23947033 MS.gene060982:CDS 35.0%
AGAAAAGCTGAAAAGCAAGA+AGG - chr2.3:23945512-23945531 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG + chr2.3:23946527-23946546 MS.gene060982:CDS 35.0%
ATCACTGTACCATTCAAAGT+AGG - chr2.3:23943829-23943848 None:intergenic 35.0%
CAATGCAAAAATTACTGGAG+CGG - chr2.3:23947150-23947169 None:intergenic 35.0%
CATATTGGATTTCACGCAAT+CGG + chr2.3:23947073-23947092 MS.gene060982:CDS 35.0%
GAATTGTCAGATATTGTCGA+AGG + chr2.3:23944095-23944114 MS.gene060982:intron 35.0%
GACTGAATGAAACATGTGTA+TGG - chr2.3:23944004-23944023 None:intergenic 35.0%
GCAATTAAAGACCTTGCAAA+AGG + chr2.3:23945019-23945038 MS.gene060982:CDS 35.0%
GGTAAAAACTTGGTATCTTG+TGG + chr2.3:23943652-23943671 MS.gene060982:CDS 35.0%
TCAGCTGCAGATATTAAAAC+TGG - chr2.3:23945626-23945645 None:intergenic 35.0%
TCATGTTTGCACAATCATCA+TGG + chr2.3:23946478-23946497 MS.gene060982:CDS 35.0%
TGATTGAATGTTACACGTGT+TGG - chr2.3:23944375-23944394 None:intergenic 35.0%
TGCTTATAATAGTGACTGGA+GGG - chr2.3:23944132-23944151 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG - chr2.3:23944133-23944152 None:intergenic 35.0%
! AATTCTAAAGGGTGTGGAAA+TGG + chr2.3:23943730-23943749 MS.gene060982:CDS 35.0%
! AGTGTAGCGGAATTCAAAAA+TGG - chr2.3:23945340-23945359 None:intergenic 35.0%
! ATGCCTATGAAAAGAAGCAT+TGG - chr2.3:23943686-23943705 None:intergenic 35.0%
! CAACCTATTTGGTGAAATAG+GGG - chr2.3:23945071-23945090 None:intergenic 35.0%
! CTTCCAATGCTTCTTTTCAT+AGG + chr2.3:23943680-23943699 MS.gene060982:CDS 35.0%
! TCAAATGTTTGGAACAAGAG+TGG + chr2.3:23946437-23946456 MS.gene060982:CDS 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG - chr2.3:23945033-23945052 None:intergenic 35.0%
! TTCATTTTGTACGTGCTATG+CGG + chr2.3:23944512-23944531 MS.gene060982:intron 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG - chr2.3:23946511-23946530 None:intergenic 35.0%
!! TGTAGTACTGATACTTCTGA+TGG + chr2.3:23944044-23944063 MS.gene060982:intron 35.0%
!! TGTGGTACTGATACTTCTAA+TGG + chr2.3:23944647-23944666 MS.gene060982:intron 35.0%
!!! CAAAATTTTTGGTGTGTGAC+AGG + chr2.3:23946827-23946846 MS.gene060982:intron 35.0%
!!! TGGTTTGGTTTTTGAATAGG+TGG + chr2.3:23944995-23945014 MS.gene060982:intron 35.0%
AAAGTGTGTCTGGTGTCTAA+CGG + chr2.3:23944067-23944086 MS.gene060982:intron 40.0%
ACCACATCGAGTTTGAATAG+AGG - chr2.3:23946377-23946396 None:intergenic 40.0%
ACTATAGCGCTATAGTGTAG+CGG - chr2.3:23945353-23945372 None:intergenic 40.0%
AGAGCTAAACGATACACACT+AGG - chr2.3:23947338-23947357 None:intergenic 40.0%
CAACCCCTATTTCACCAAAT+AGG + chr2.3:23945065-23945084 MS.gene060982:CDS 40.0%
CCGAGAAAATGTTCGAATAC+GGG + chr2.3:23947015-23947034 MS.gene060982:CDS 40.0%
CGAGTTTGAATAGAGGCAAA+TGG - chr2.3:23946370-23946389 None:intergenic 40.0%
GAGTCTGAATTTAGCGAGAT+TGG + chr2.3:23947200-23947219 MS.gene060982:CDS 40.0%
GGAGAAAGAACCGAAATTGA+GGG + chr2.3:23947169-23947188 MS.gene060982:CDS 40.0%
GGATGCTCTTGATAGATTGT+AGG + chr2.3:23945590-23945609 MS.gene060982:intron 40.0%
TACTGATACTTCTGAGTGTC+TGG + chr2.3:23944769-23944788 MS.gene060982:intron 40.0%
TAGCTGCTATTGGACAATAC+TGG + chr2.3:23945465-23945484 MS.gene060982:intron 40.0%
TCCTTTACACCTCACACATA+TGG + chr2.3:23946140-23946159 MS.gene060982:intron 40.0%
TCTTGATGAAGCGATCAAGT+TGG + chr2.3:23947226-23947245 MS.gene060982:CDS 40.0%
TGAATGTTACATACTCCCTC+CGG - chr2.3:23944260-23944279 None:intergenic 40.0%
TGCAGATGCAAGTGATGATA+AGG - chr2.3:23946585-23946604 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2.3:23944242-23944261 MS.gene060982:intron 40.0%
TGGAAATGGAGCTCGTAAAT+TGG + chr2.3:23943744-23943763 MS.gene060982:CDS 40.0%
TGGAGAAAGAACCGAAATTG+AGG + chr2.3:23947168-23947187 MS.gene060982:CDS 40.0%
TTCGAATACGGGAAGAATCT+CGG + chr2.3:23947026-23947045 MS.gene060982:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2.3:23944241-23944260 MS.gene060982:intron 40.0%
TTGTCAAATAGCCGCTATTG+CGG - chr2.3:23945377-23945396 None:intergenic 40.0%
! AAGGTGAATTCTAAAGGGTG+TGG + chr2.3:23943724-23943743 MS.gene060982:CDS 40.0%
! CCCGTATTCGAACATTTTCT+CGG - chr2.3:23947018-23947037 None:intergenic 40.0%
! CGCTCCAGTAATTTTTGCAT+TGG + chr2.3:23947148-23947167 MS.gene060982:CDS 40.0%
! CTTCTAATGGAAAGTGTGTC+TGG + chr2.3:23944660-23944679 MS.gene060982:intron 40.0%
! GGGTATCATTCACGTTTTTC+TGG - chr2.3:23945264-23945283 None:intergenic 40.0%
! TCACTAGCTTACCTCTTCTT+AGG - chr2.3:23945965-23945984 None:intergenic 40.0%
! TTCTTTTCCATCTACTCTGC+TGG + chr2.3:23946341-23946360 MS.gene060982:intron 40.0%
!! ATCAAGTTGGTCAAGAGTTG+TGG + chr2.3:23947239-23947258 MS.gene060982:CDS 40.0%
!! TCAAGTTGGTCAAGAGTTGT+GGG + chr2.3:23947240-23947259 MS.gene060982:CDS 40.0%
!! TGTGTATCGTTTAGCTCTTG+AGG + chr2.3:23947340-23947359 MS.gene060982:CDS 40.0%
AACATGTGTATGGAGTTCGC+CGG - chr2.3:23943994-23944013 None:intergenic 45.0%
AATCGAACGAGCACAAGAGT+TGG + chr2.3:23947265-23947284 MS.gene060982:CDS 45.0%
ACTGCAGAGCCTACTTTGAA+TGG + chr2.3:23943817-23943836 MS.gene060982:CDS 45.0%
AGTTTCAGGCCATATGTGTG+AGG - chr2.3:23946152-23946171 None:intergenic 45.0%
CAAAAATTACTGGAGCGGTC+AGG - chr2.3:23947145-23947164 None:intergenic 45.0%
CCAAGTAGTCGACGACATAT+TGG + chr2.3:23947058-23947077 MS.gene060982:CDS 45.0%
GATGAGAGTGACCTAAGAAG+AGG + chr2.3:23945951-23945970 MS.gene060982:CDS 45.0%
GCCATATGTGTGAGGTGTAA+AGG - chr2.3:23946144-23946163 None:intergenic 45.0%
GCCTCTATTCAAACTCGATG+TGG + chr2.3:23946373-23946392 MS.gene060982:intron 45.0%
GCTAAACGATACACACTAGG+AGG - chr2.3:23947335-23947354 None:intergenic 45.0%
GGATAGGTCAACCCCTTAAA+TGG + chr2.3:23946660-23946679 MS.gene060982:intron 45.0%
GGCTAAACGTCGATGCTTTA+CGG - chr2.3:23945880-23945899 None:intergenic 45.0%
TATGGCGCTATAGCTGCTAT+TGG + chr2.3:23945455-23945474 MS.gene060982:intron 45.0%
TCTTTCATATTCACCGGGCA+GGG - chr2.3:23946630-23946649 None:intergenic 45.0%
TTCTTTCATATTCACCGGGC+AGG - chr2.3:23946631-23946650 None:intergenic 45.0%
TTGATTGCTGCCAGTGTGAA+AGG + chr2.3:23946957-23946976 MS.gene060982:CDS 45.0%
TTTCACACTGGCAGCAATCA+AGG - chr2.3:23946958-23946977 None:intergenic 45.0%
TTTGGTGAAATAGGGGTTGC+TGG - chr2.3:23945064-23945083 None:intergenic 45.0%
! AAGTTGGTCAAGAGTTGTGG+GGG + chr2.3:23947242-23947261 MS.gene060982:CDS 45.0%
! ACTTGCGTGCAGGGTTATTT+TGG + chr2.3:23946714-23946733 MS.gene060982:intron 45.0%
! CCAATATGTCGTCGACTACT+TGG - chr2.3:23947061-23947080 None:intergenic 45.0%
! CTTCTGATCGAAAGTGTGTC+TGG + chr2.3:23944057-23944076 MS.gene060982:intron 45.0%
! CTTCTGATGGAAAGTGTGTC+TGG + chr2.3:23944427-23944446 MS.gene060982:intron 45.0%
! GACATGTAAGTGTGTCACTG+CGG + chr2.3:23944884-23944903 MS.gene060982:intron 45.0%
! TATGTCGTCGACTACTTGGA+AGG - chr2.3:23947057-23947076 None:intergenic 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG + chr2.3:23945645-23945664 MS.gene060982:CDS 45.0%
!! CAAGTTGGTCAAGAGTTGTG+GGG + chr2.3:23947241-23947260 MS.gene060982:CDS 45.0%
!! GTATGATGATGGAACTCACC+TGG - chr2.3:23946548-23946567 None:intergenic 45.0%
!! TCGTTTAGCTCTTGAGGACA+TGG + chr2.3:23947346-23947365 MS.gene060982:CDS 45.0%
!! TGCGGTACTGATACTTCTGA+TGG + chr2.3:23944530-23944549 MS.gene060982:intron 45.0%
AATAACCCTGCACGCAAGTG+TGG - chr2.3:23946713-23946732 None:intergenic 50.0%
ATGGAGACCAGCAGAGTAGA+TGG - chr2.3:23946351-23946370 None:intergenic 50.0%
GAAAAGCAAGAAGGCTCAGC+AGG - chr2.3:23945503-23945522 None:intergenic 50.0%
GACACCAAGAACACAAGAGC+TGG - chr2.3:23945683-23945702 None:intergenic 50.0%
GAGACCAGCTCTTGTGTTCT+TGG + chr2.3:23945676-23945695 MS.gene060982:CDS 50.0%
GCGCTATAGTACCGCAATAG+CGG + chr2.3:23945363-23945382 MS.gene060982:intron 50.0%
GCTGAGCAGATCTTTAGTGC+TGG + chr2.3:23945641-23945660 MS.gene060982:CDS 50.0%
TTCCAAGATTCAACCCTGCC+CGG + chr2.3:23946614-23946633 MS.gene060982:intron 50.0%
! AAAGGAGCGGCAGTTTTCAG+CGG + chr2.3:23946975-23946994 MS.gene060982:CDS 50.0%
! CTCAAGGCCATGTAGTTCTG+CGG - chr2.3:23945714-23945733 None:intergenic 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG + chr2.3:23945644-23945663 MS.gene060982:CDS 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG + chr2.3:23945651-23945670 MS.gene060982:CDS 50.0%
AACTGCCGCTCCTTTCACAC+TGG - chr2.3:23946970-23946989 None:intergenic 55.0%
ACGCAATCGGCAGAGCAACT+TGG + chr2.3:23947086-23947105 MS.gene060982:CDS 55.0%
ACTTGGAAAGCCTGCTGGCA+CGG + chr2.3:23947103-23947122 MS.gene060982:CDS 55.0%
AGAGCGACCGCAGAACTACA+TGG + chr2.3:23945704-23945723 MS.gene060982:CDS 55.0%
CACACTGGCAGCAATCAAGG+AGG - chr2.3:23946955-23946974 None:intergenic 55.0%
GAGCAACTTGGAAAGCCTGC+TGG + chr2.3:23947098-23947117 MS.gene060982:CDS 55.0%
TGCTGCCAGTGTGAAAGGAG+CGG + chr2.3:23946962-23946981 MS.gene060982:CDS 55.0%
TGGAACAAGAGTGGCAGTGC+TGG + chr2.3:23946446-23946465 MS.gene060982:CDS 55.0%
TGGAGCGGTCAGGTTACCTT+TGG - chr2.3:23947135-23947154 None:intergenic 55.0%
CACCGGGCAGGGTTGAATCT+TGG - chr2.3:23946619-23946638 None:intergenic 60.0%
CGGTCAGGTTACCTTTGGCG+AGG - chr2.3:23947130-23947149 None:intergenic 60.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG + chr2.3:23946450-23946469 MS.gene060982:CDS 60.0%
GGGCTCCACACTTGCGTGCA+GGG + chr2.3:23946705-23946724 MS.gene060982:intron 65.0%
TGGGCTCCACACTTGCGTGC+AGG + chr2.3:23946704-23946723 MS.gene060982:intron 65.0%
GCTGGCACGGACCTCGCCAA+AGG + chr2.3:23947116-23947135 MS.gene060982:CDS 70.0%
TTGGCGAGGTCCGTGCCAGC+AGG - chr2.3:23947116-23947135 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 23943616 23947397 23943616 ID=MS.gene060982
chr2.3 mRNA 23943616 23947397 23943616 ID=MS.gene060982.t1;Parent=MS.gene060982
chr2.3 exon 23943616 23943838 23943616 ID=MS.gene060982.t1.exon1;Parent=MS.gene060982.t1
chr2.3 CDS 23943616 23943838 23943616 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
chr2.3 exon 23945014 23945141 23945014 ID=MS.gene060982.t1.exon2;Parent=MS.gene060982.t1
chr2.3 CDS 23945014 23945141 23945014 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
chr2.3 exon 23945605 23945732 23945605 ID=MS.gene060982.t1.exon3;Parent=MS.gene060982.t1
chr2.3 CDS 23945605 23945732 23945605 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
chr2.3 exon 23945869 23945972 23945869 ID=MS.gene060982.t1.exon4;Parent=MS.gene060982.t1
chr2.3 CDS 23945869 23945972 23945869 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
chr2.3 exon 23946421 23946548 23946421 ID=MS.gene060982.t1.exon5;Parent=MS.gene060982.t1
chr2.3 CDS 23946421 23946548 23946421 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
chr2.3 exon 23946849 23947397 23946849 ID=MS.gene060982.t1.exon6;Parent=MS.gene060982.t1
chr2.3 CDS 23946849 23947397 23946849 ID=cds.MS.gene060982.t1;Parent=MS.gene060982.t1
Gene Sequence

>MS.gene060982

ATGATGTCTGTCACTAGCAAAAGCATTGATTTTTTTGGTAAAAACTTGGTATCTTGTGGCTGTTCTTCCAATGCTTCTTTTCATAGGCATGAAGTTAAGAATTATGCTAAGGTGAATTCTAAAGGGTGTGGAAATGGAGCTCGTAAATTGGTTTGTTGTAAGAAGAGGAATACTCATCAATATCGTGTTTCTTCTATGGATACTGCAGAGCCTACTTTGAATGGTACAGTGATATTTTATTTTATTTTTTTAATAATTTGAAGTGTGTTGTGGAGTTACTTCATGTTACTAGTTTGCATGAATGATTTTGTCTGTACTACGTAGTATCTTATTGAAAGTGTGTCGGGTGTTCGTCAGTATCAGAATTATCTGATACCGGCGAACTCCATACACATGTTTCATTCAGTCATTTCATTTTGTATGTACTATGTAGTACTGATACTTCTGATCGAAAGTGTGTCTGGTGTCTAACGGTATCAGAATTGTCAGATATTGTCGAAGGCTAGACATACTCCCTCCAGTCACTATTATAAGCAAAAATCAACTTTCTAGGCATTAAATGATGTATCTAGTCTATATATTGACCAAATACATCATTTAATGAGTGAACCTAAAAAGTTGATTTTTGCTTATAATAGTGACCGGAGGGAGTATGTAACATTCAATCATTTCATTTTGTATGTACTATGTAGTACTGATACTTCTGATCGAAAGTGTGTCTGGTGTCTGACAGTATCAGAATTGTTCTCTCAAACGCCAACACGTGTAACATTCAATCATTTCATTTTGCATGTACTATGTAGTACTGATACTTCTGATGGAAAGTGTGTCTGGTTTCCGACAATATTAGAATTGTCAGATATTGTCGAAGGCCAGACATATGTAACATCAATCATTTCATTTTGTACGTGCTATGCGGTACTGATACTTCTGATGGAAAGTGTGTCTGGTGTCCGACAATATTAGAATTGTCAGATATTGTTGAAGGCCAGACATATGTAACATTCAATCATTTCATTTTGTACGTACTATGTGGTACTGATACTTCTAATGGAAAGTGTGTCTGGTGTCCGACAATATTAGAATTGTCAGATATTGTCGAACGTCAGACATATGTAACATTCAATCATTTCATTTTGTATGTACTATGTGGTACTGATACTTCTGAGTGTCTGGTGTCCAACAGAATTGACAGATATTGTTGAACACCAAACACATGTAACATTCAATTATTTCATTTTTTTTTCTTTCAAATTATTATCGGTCTGGACATGTAAGTGTGTCACTGCGGTGTGAGTATTTGTGTCAGTGTTTTATAGCGAATGAAGTAATATATGTTCGTATTGATTTTAGAAGTGGAACTTTGACATTAAAAGATTTGGTTTGGTTTTTGAATAGGTGGAGCAATTAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATCCAGCAACCCCTATTTCACCAAATAGGTTGTTTGAAGTAGTCTCCGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTGTAAGTATTGCTTTCTATATTCATTTTGTTTGTTGTTTTTTACTATCTGCCTTAGTTGCTTATAATTGTGTCCTGTCTTGTCTGTTTGAGTATTTCTTTGTTCTATTGACTTCAACAGACCAGAAAAACGTGAATGATACCCATTGTTCAGTGATTTTAAACAGGACATTCTTTGCTTATTGTTCTTTTAATTATCCATTTTTGAATTCCGCTACACTATAGCGCTATAGTACCGCAATAGCGGCTATTTGACAACACCTGTACTAAATTGTATATCACAAAACAATATTGATTTTTTCAAATTCTGCTATGCTATGGCGCTATAGCTGCTATTGGACAATACTGGTCATTCTTATTGCCTGCTGAGCCTTCTTGCTTTTCAGCTTTTCTTACACTGCAAACAGTAATGATTAGATTTTTGTTGCCTATATGTTAATTTAACTGATGAGGATGCTCTTGATAGATTGTAGGTGCCGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTTGTGTTCTTGGTGTCAAGAGCGACCGCAGAACTACATGGCCTTGAGTAAGTATACAAATCTGTCTTTATCTCTCTCACATGCGCGCGCACACGCAAAGAGTAGTCATTTGCTTGTCCTGAAAATTCTATGTAAATAGGCTATAAAAAATTGAAAGCTTCATCTTGAAATGAATGATTTCAGGGATCTTACCGTAAAGCATCGACGTTTAGCCGAGATAGTTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTGTTAGATGAGAGTGACCTAAGAAGAGGTAAGCTAGTGATATTTAGAAATGGCTGTTTAATGTTCTTGACATTACTTTATTTTTCTGCTTATGATCATGTTTGGCAACGTGCATGCCCTAAATCAATTTTTGTCATACTTTACGGTCGTTTTGATTTTAATCTTACCATGTTATAATTTATTTGATCAAGAATTTCCTTTACACCTCACACATATGGCCTGAAACTTTGTTTTAATTTGGAATTAAACATTATTGCTCGTTGTATGAGTCATTACATGTCGGTGTTAAGTACAAGTCTAAAGATACATCTGCTATGTATCACCTTGACAAATTGGTATATACATTCATAAAAAGGCTTCAAGGTTTCAAACTGTGACATTTGATTTCCTTGTTTTTTCTTTTCCATCTACTCTGCTGGTCTCCATTTGCCTCTATTCAAACTCGATGTGGTTGCTAACTTGTTTTGAATTAATAGGAAAGGAAACTGTTCATCAAATGTTTGGAACAAGAGTGGCAGTGCTGGCTGGAGACTTCATGTTTGCACAATCATCATGGTATCTCGCCAACCTTGAAAACATTGAAGTCATTAAACTTATCAGCCAGGTGAGTTCCATCATCATACAACGTTGAAAATATCCTTATCATCACTTGCATCTGCAAAATCATCATTCCAAGATTCAACCCTGCCCGGTGAATATGAAAGAACATATGTTAGGATAGGTCAACCCCTTAAATGGATATCAATTACTTCAAGGGATTGGGCTCCACACTTGCGTGCAGGGTTATTTTGGTCTAATGAAAAAATCATTATTTCGGAAGTGCTTAGCATAGTGTATGAAAAGATGCATTAGTCCATTTTCTAAACATTGTTTTTATTTTTGCAAAATTTTTGGTGTGTGACAGGTGATTAAAGATTTTGCTAGTGGAGAAATAAAGCAAGCTTCTAGCTTGTTTGATTGTGATGTTCAGCTCGACGAGTATCTAATCAAGAGTTATTTTAAGACAGCCTCCTTGATTGCTGCCAGTGTGAAAGGAGCGGCAGTTTTCAGCGGTTCTGACAGCAGCATGACCGAGAAAATGTTCGAATACGGGAAGAATCTCGGTCTCTCCTTCCAAGTAGTCGACGACATATTGGATTTCACGCAATCGGCAGAGCAACTTGGAAAGCCTGCTGGCACGGACCTCGCCAAAGGTAACCTGACCGCTCCAGTAATTTTTGCATTGGAGAAAGAACCGAAATTGAGGGATATCATTGAGTCTGAATTTAGCGAGATTGGTTCTCTTGATGAAGCGATCAAGTTGGTCAAGAGTTGTGGGGGAATCGAACGAGCACAAGAGTTGGCAAAAGAGAAAGCTGATCTTGCTATTCAAAGTCTTCAATGTCTTCCTCCTAGTGTGTATCGTTTAGCTCTTGAGGACATGGTGACATATAATCTTCAAAGGATTGCATAA

Protein sequence

>MS.gene060982.t1

MMSVTSKSIDFFGKNLVSCGCSSNASFHRHEVKNYAKVNSKGCGNGARKLVCCKKRNTHQYRVSSMDTAEPTLNGGAIKDLAKGLNLKSYPATPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELHGLEDLTVKHRRLAEIVEMIHTASLIHDDVLDESDLRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIKLVKSCGGIERAQELAKEKADLAIQSLQCLPPSVYRLALEDMVTYNLQRIA