Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08927.t1 | XP_003629711.2 | 95.9 | 728 | 29 | 1 | 1 | 727 | 1 | 728 | 0.00E+00 | 1377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08927.t1 | Q84P17 | 68.6 | 730 | 218 | 7 | 4 | 727 | 3 | 727 | 6.7e-293 | 1007.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08927.t1 | G7LHZ3 | 95.9 | 728 | 29 | 1 | 1 | 727 | 1 | 728 | 0.0e+00 | 1377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045801 | MS.gene08927 | PPI |
| MS.gene08927 | MS.gene83231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08927.t1 | MTR_8g085680 | 96.429 | 728 | 25 | 1 | 1 | 727 | 1 | 728 | 0.0 | 1444 |
| MS.gene08927.t1 | MTR_8g085680 | 95.965 | 694 | 27 | 1 | 1 | 693 | 1 | 694 | 0.0 | 1373 |
| MS.gene08927.t1 | MTR_8g086050 | 85.871 | 729 | 101 | 1 | 1 | 727 | 1 | 729 | 0.0 | 1264 |
| MS.gene08927.t1 | MTR_8g085680 | 96.175 | 549 | 20 | 1 | 1 | 548 | 1 | 549 | 0.0 | 1088 |
| MS.gene08927.t1 | MTR_8g086050 | 86.356 | 623 | 83 | 1 | 1 | 621 | 1 | 623 | 0.0 | 1080 |
| MS.gene08927.t1 | MTR_8g086050 | 86.294 | 591 | 79 | 1 | 1 | 589 | 1 | 591 | 0.0 | 1020 |
| MS.gene08927.t1 | MTR_2g056120 | 50.137 | 730 | 344 | 11 | 1 | 720 | 1 | 720 | 0.0 | 723 |
| MS.gene08927.t1 | MTR_7g084850 | 24.880 | 623 | 428 | 22 | 123 | 721 | 118 | 724 | 3.41e-30 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08927.t1 | AT1G55320 | 69.315 | 730 | 213 | 7 | 4 | 727 | 3 | 727 | 0.0 | 1042 |
| MS.gene08927.t1 | AT1G55320 | 74.755 | 511 | 126 | 3 | 220 | 727 | 1 | 511 | 0.0 | 792 |
| MS.gene08927.t1 | AT5G23050 | 50.484 | 723 | 345 | 8 | 1 | 719 | 1 | 714 | 0.0 | 700 |
| MS.gene08927.t1 | AT5G23050 | 49.073 | 593 | 291 | 7 | 1 | 591 | 1 | 584 | 0.0 | 548 |
| MS.gene08927.t1 | AT5G36880 | 24.885 | 651 | 426 | 26 | 106 | 721 | 97 | 719 | 2.08e-25 | 112 |
| MS.gene08927.t1 | AT5G36880 | 24.961 | 649 | 428 | 25 | 106 | 721 | 47 | 669 | 2.29e-25 | 112 |
| MS.gene08927.t1 | AT5G36880 | 24.961 | 649 | 428 | 25 | 106 | 721 | 47 | 669 | 2.29e-25 | 112 |
| MS.gene08927.t1 | AT5G36880 | 24.961 | 649 | 428 | 25 | 106 | 721 | 47 | 669 | 2.29e-25 | 112 |
| MS.gene08927.t1 | AT5G36880 | 24.961 | 649 | 428 | 25 | 106 | 721 | 47 | 669 | 2.29e-25 | 112 |
| MS.gene08927.t1 | AT5G36880 | 24.913 | 574 | 374 | 23 | 106 | 646 | 47 | 596 | 1.99e-18 | 90.1 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGAAGATTTACTTTA+AGG | 0.083745 | 4.4:+14468316 | MS.gene08927:CDS |
| CAACCTTAATCCTTTATTTA+AGG | 0.093679 | 4.4:+14469403 | MS.gene08927:CDS |
| CTTCTTCTCCTCCTCTTTAT+TGG | 0.129077 | 4.4:+14462259 | MS.gene08927:CDS |
| TGCATCACCCTTGGAGAAAT+TGG | 0.134060 | 4.4:-14465020 | None:intergenic |
| TATTGCTGGCCTACAAATTT+AGG | 0.157820 | 4.4:+14466863 | MS.gene08927:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.4:+14467664 | MS.gene08927:intron |
| ATACTCTCATCTTGTTTGTT+AGG | 0.203184 | 4.4:-14464818 | None:intergenic |
| GCCTCCACAACATTCAATTA+TGG | 0.214028 | 4.4:-14467902 | None:intergenic |
| TTAGTCATCCTTGATGAAAA+TGG | 0.254005 | 4.4:+14468012 | MS.gene08927:CDS |
| TGACCTTAAATAAAGGATTA+AGG | 0.255216 | 4.4:-14469406 | None:intergenic |
| CTACTACAGCCTCAAGCTTT+TGG | 0.257165 | 4.4:+14467958 | MS.gene08927:CDS |
| AGGCGAGTTGCAATTTCTTT+TGG | 0.267236 | 4.4:-14465142 | None:intergenic |
| TTATATTCATGCTTCCTATC+TGG | 0.270357 | 4.4:+14466908 | MS.gene08927:CDS |
| TAGGGCTGATGAATGCATTT+TGG | 0.283163 | 4.4:+14469250 | MS.gene08927:CDS |
| GGGCTTATTCCCTGTATATA+TGG | 0.294420 | 4.4:+14468265 | MS.gene08927:CDS |
| GCTTGGAACTGTTCCCAAAA+TGG | 0.311835 | 4.4:-14467678 | None:intergenic |
| CACGGAGGAACCTGGCTTCC+TGG | 0.313286 | 4.4:+14464749 | MS.gene08927:CDS |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.4:-14468939 | None:intergenic |
| CATGAGAAGATTTACTTTAA+GGG | 0.321098 | 4.4:+14468317 | MS.gene08927:CDS |
| CCTCCACAACATTCAATTAT+GGG | 0.325262 | 4.4:-14467901 | None:intergenic |
| TGAGTCCAAGGAATTGCTTT+TGG | 0.327617 | 4.4:-14466776 | None:intergenic |
| GAGAGTTTGACCTTAAATAA+AGG | 0.331168 | 4.4:-14469413 | None:intergenic |
| CAACACTTCCTTCAATTCAT+TGG | 0.331370 | 4.4:-14462100 | None:intergenic |
| CATGAATCTTGGTGGAATAA+AGG | 0.333589 | 4.4:+14468940 | MS.gene08927:CDS |
| AAAAGAGGAAAACTAGTAAT+AGG | 0.341960 | 4.4:-14464521 | None:intergenic |
| TCTCCGCTAGGTCATGGTTT+TGG | 0.352620 | 4.4:+14466956 | MS.gene08927:CDS |
| TACTCTCATCTTGTTTGTTA+GGG | 0.358590 | 4.4:-14464817 | None:intergenic |
| GAATCGATTGATTGATAGAT+TGG | 0.364438 | 4.4:-14466638 | None:intergenic |
| AGGATTAAGGTTGGTTTGAA+TGG | 0.369128 | 4.4:-14469393 | None:intergenic |
| ACAAATATAACCAGTTGTTC+TGG | 0.372196 | 4.4:-14469311 | None:intergenic |
| CAAATGTTGATGATGACCTT+TGG | 0.373899 | 4.4:+14467854 | MS.gene08927:CDS |
| AAATTGAGCGCGTCTGTGAT+AGG | 0.374839 | 4.4:+14469231 | MS.gene08927:CDS |
| GATGTATCTAAAATGCAATT+TGG | 0.379893 | 4.4:-14464710 | None:intergenic |
| TTCCTTCAATTCATTGGCTT+CGG | 0.393896 | 4.4:-14462094 | None:intergenic |
| CTCATCTTGTTTGTTAGGGT+GGG | 0.396642 | 4.4:-14464813 | None:intergenic |
| TACACAATGTATGGAGGGCT+TGG | 0.407496 | 4.4:+14467721 | MS.gene08927:CDS |
| TGGAGGGTGTGAGGGTATGA+TGG | 0.408960 | 4.4:-14462195 | None:intergenic |
| TCAGTTGCTCCCATATATAC+AGG | 0.409158 | 4.4:-14468275 | None:intergenic |
| AACCCGGAGACGTCTATTGC+TGG | 0.420668 | 4.4:+14466849 | MS.gene08927:CDS |
| TCCATCTGCAGCACTTCGTA+TGG | 0.431839 | 4.4:-14466807 | None:intergenic |
| GCAGGCAATCCGCACAAACC+TGG | 0.433498 | 4.4:+14464442 | MS.gene08927:CDS |
| TAGACTCCCCATGATATAAC+AGG | 0.435997 | 4.4:-14467938 | None:intergenic |
| CTGGCCTACAAATTTAGGTT+GGG | 0.439023 | 4.4:+14466868 | MS.gene08927:CDS |
| TCTCATCTTGTTTGTTAGGG+TGG | 0.442425 | 4.4:-14464814 | None:intergenic |
| TAAGAGAACATGACTTATCA+TGG | 0.450422 | 4.4:+14466456 | MS.gene08927:CDS |
| TTGGAAGAGTACACAATGTA+TGG | 0.451022 | 4.4:+14467712 | MS.gene08927:CDS |
| GTATTGCACTGCAGGTGTAC+TGG | 0.452092 | 4.4:+14464645 | MS.gene08927:intron |
| CCAACACAAGGTACATCATC+TGG | 0.453253 | 4.4:-14468236 | None:intergenic |
| ACTACAATTGTTCAGGATGC+AGG | 0.453438 | 4.4:+14467650 | MS.gene08927:intron |
| GGTTTCTACATTTAGAGAGC+AGG | 0.460097 | 4.4:+14464424 | MS.gene08927:intron |
| TGCCGAAGCCAATGAATTGA+AGG | 0.463190 | 4.4:+14462092 | MS.gene08927:CDS |
| TTCAATTCATTGGCTTCGGC+AGG | 0.464114 | 4.4:-14462090 | None:intergenic |
| AAATGGAGGTCCAGAACAAC+TGG | 0.465792 | 4.4:+14469301 | MS.gene08927:CDS |
| CCACATTACTTCCAGGTTGG+TGG | 0.467372 | 4.4:+14464982 | MS.gene08927:intron |
| GCCATCTTGTTGTGCAAGGA+AGG | 0.472268 | 4.4:+14468906 | MS.gene08927:CDS |
| ATGAGAGTATAGCTATCATC+TGG | 0.476182 | 4.4:+14464831 | MS.gene08927:CDS |
| TTTAGGAGCATCCTTGTACA+AGG | 0.477406 | 4.4:+14464496 | MS.gene08927:CDS |
| ATCACCCAACCTAAATTTGT+AGG | 0.482826 | 4.4:-14466872 | None:intergenic |
| TGTTTGTTAGGGTGGGAGCT+AGG | 0.484688 | 4.4:-14464806 | None:intergenic |
| GGGATCCAAAAGCAATTCCT+TGG | 0.486702 | 4.4:+14466771 | MS.gene08927:CDS |
| ACAAATTTAGGTTGGGTGAT+GGG | 0.487973 | 4.4:+14466875 | MS.gene08927:CDS |
| GTACCTTGTGTTGGTGAAGC+GGG | 0.488589 | 4.4:+14468245 | MS.gene08927:CDS |
| GGCTTATTCCCTGTATATAT+GGG | 0.489550 | 4.4:+14468266 | MS.gene08927:CDS |
| GCTTGCATCCTGTTATATCA+TGG | 0.489645 | 4.4:+14467930 | MS.gene08927:CDS |
| GTCAGTGTTTCTGCTGCAAA+TGG | 0.491410 | 4.4:+14469284 | MS.gene08927:CDS |
| AATTGCAATTGCATCACCCT+TGG | 0.492471 | 4.4:-14465029 | None:intergenic |
| TACGAAGTGCTGCAGATGGA+TGG | 0.492810 | 4.4:+14466810 | MS.gene08927:CDS |
| GCTGGCCTACAAATTTAGGT+TGG | 0.493594 | 4.4:+14466867 | MS.gene08927:CDS |
| TGTGAGGGTATGATGGTTTG+AGG | 0.493666 | 4.4:-14462188 | None:intergenic |
| CATCAAAACACGGAGGAACC+TGG | 0.494365 | 4.4:+14464741 | MS.gene08927:CDS |
| GATATAATCAAAAGAACTGT+AGG | 0.494735 | 4.4:+14468881 | MS.gene08927:CDS |
| CTTAAATAAAGGATTAAGGT+TGG | 0.496808 | 4.4:-14469402 | None:intergenic |
| GAGCAAGAGTTGCTCCAGAT+AGG | 0.507851 | 4.4:-14466922 | None:intergenic |
| GCAGGAAATTCCCTTTGTAC+AGG | 0.508196 | 4.4:+14465329 | MS.gene08927:CDS |
| AGAAGCTGGTGGAGGGTGTG+AGG | 0.510536 | 4.4:-14462204 | None:intergenic |
| AGAGTGGTGATGATCATAGA+TGG | 0.510649 | 4.4:-14462235 | None:intergenic |
| GTACTGGTCTCTTGTTCTAA+AGG | 0.511821 | 4.4:+14464661 | MS.gene08927:CDS |
| AGGCCAGCAATAGACGTCTC+CGG | 0.518061 | 4.4:-14466852 | None:intergenic |
| AAGTACAGAACCAGGAAGCC+AGG | 0.518355 | 4.4:-14464759 | None:intergenic |
| ATCAACATTTGAAGTTTCCC+CGG | 0.519896 | 4.4:-14467842 | None:intergenic |
| TATAGTAGAGAAGCTGGTGG+AGG | 0.523030 | 4.4:-14462212 | None:intergenic |
| TACAAATTTAGGTTGGGTGA+TGG | 0.523734 | 4.4:+14466874 | MS.gene08927:CDS |
| GCTATCATCTGGAGGGATGA+AGG | 0.523832 | 4.4:+14464842 | MS.gene08927:CDS |
| CAGGCAATCCGCACAAACCT+GGG | 0.524737 | 4.4:+14464443 | MS.gene08927:CDS |
| CTTGCATCCTGTTATATCAT+GGG | 0.525021 | 4.4:+14467931 | MS.gene08927:CDS |
| GAAGCTGGTGGAGGGTGTGA+GGG | 0.525825 | 4.4:-14462203 | None:intergenic |
| GGCCAGCAATAGACGTCTCC+GGG | 0.527044 | 4.4:-14466851 | None:intergenic |
| AATGTATGGAGGGCTTGGAT+TGG | 0.527992 | 4.4:+14467726 | MS.gene08927:CDS |
| AATTGAGCGCGTCTGTGATA+GGG | 0.528177 | 4.4:+14469232 | MS.gene08927:CDS |
| CTCCGTGTTTCCGATGCAAA+GGG | 0.530604 | 4.4:+14465163 | MS.gene08927:CDS |
| CACTCTCCTCAGCTGACACA+TGG | 0.531737 | 4.4:+14462142 | MS.gene08927:CDS |
| AGATGGTATAGTAGAGAAGC+TGG | 0.532142 | 4.4:-14462218 | None:intergenic |
| ATATATAATCACAGCATTGA+CGG | 0.539607 | 4.4:-14465065 | None:intergenic |
| GCTGATGATACCATGAATCT+TGG | 0.539803 | 4.4:+14468929 | MS.gene08927:CDS |
| CCTCCGTGTTTCCGATGCAA+AGG | 0.541069 | 4.4:+14465162 | MS.gene08927:CDS |
| CATGGATCTCCGCTAGGTCA+TGG | 0.541719 | 4.4:+14466950 | MS.gene08927:CDS |
| GGTCGTCTCATGCAAAATCA+TGG | 0.541952 | 4.4:+14464464 | MS.gene08927:CDS |
| CCGCTTCCAACAAAATACTA+AGG | 0.542322 | 4.4:+14469647 | MS.gene08927:CDS |
| CCCTTCCTTGCACAACAAGA+TGG | 0.543979 | 4.4:-14468907 | None:intergenic |
| TAGCAGGTTCTTCGAAGACA+TGG | 0.543982 | 4.4:+14468857 | MS.gene08927:intron |
| AAGCATGAATATAAAAGAGT+TGG | 0.545939 | 4.4:-14466899 | None:intergenic |
| AACACATCCTGCTAAAACAA+TGG | 0.550057 | 4.4:-14465092 | None:intergenic |
| TATACCTTTCCTTTGTAAAG+CGG | 0.551050 | 4.4:-14468344 | None:intergenic |
| ACGAAGTGCTGCAGATGGAT+GGG | 0.552217 | 4.4:+14466811 | MS.gene08927:CDS |
| CCTTAAAGTAAATCTTCTCA+TGG | 0.553450 | 4.4:-14468316 | None:intergenic |
| AAACCCATAATTGAATGTTG+TGG | 0.554187 | 4.4:+14467898 | MS.gene08927:CDS |
| ATGATGGTTTGAGGACTCTA+CGG | 0.555176 | 4.4:-14462179 | None:intergenic |
| GAGGAGGAGAAGAAGAAGAG+TGG | 0.555603 | 4.4:-14462251 | None:intergenic |
| TACCCTTTGCATCGGAAACA+CGG | 0.557533 | 4.4:-14465165 | None:intergenic |
| ACTTCATATTAAGAGGTGGC+AGG | 0.560885 | 4.4:+14465311 | MS.gene08927:CDS |
| AAGGGAATGCCGCTTTACAA+AGG | 0.566824 | 4.4:+14468335 | MS.gene08927:CDS |
| GTATCTAAAATGCAATTTGG+AGG | 0.568095 | 4.4:-14464707 | None:intergenic |
| CCCATACGAAGTGCTGCAGA+TGG | 0.572789 | 4.4:+14466806 | MS.gene08927:CDS |
| GATGATACCATGAATCTTGG+TGG | 0.578979 | 4.4:+14468932 | MS.gene08927:CDS |
| CTGTACCATGGATCTCCGCT+AGG | 0.582836 | 4.4:+14466944 | MS.gene08927:CDS |
| CGTGAAAATACCCTTTGCAT+CGG | 0.583654 | 4.4:-14465173 | None:intergenic |
| CCAACATCATTGTCTATCAC+AGG | 0.584997 | 4.4:-14466425 | None:intergenic |
| ATAATCAAAAGAACTGTAGG+AGG | 0.585477 | 4.4:+14468884 | MS.gene08927:CDS |
| TGGTATAGTAGAGAAGCTGG+TGG | 0.589291 | 4.4:-14462215 | None:intergenic |
| AGAGAAGGGAACCAATAAAG+AGG | 0.590321 | 4.4:-14462270 | None:intergenic |
| GCAACTCTTGCTCTGTACCA+TGG | 0.591404 | 4.4:+14466932 | MS.gene08927:CDS |
| CCATCTGCAGCACTTCGTAT+GGG | 0.591719 | 4.4:-14466806 | None:intergenic |
| CCATCTTGTTGTGCAAGGAA+GGG | 0.596864 | 4.4:+14468907 | MS.gene08927:CDS |
| ATGGGCGAAAGTTGAGTCCA+AGG | 0.598596 | 4.4:-14466788 | None:intergenic |
| CCCATAATTGAATGTTGTGG+AGG | 0.600562 | 4.4:+14467901 | MS.gene08927:CDS |
| ATAGTAGAGAAGCTGGTGGA+GGG | 0.601851 | 4.4:-14462211 | None:intergenic |
| TTCTTCCAGTCGAGTCGTTG+AGG | 0.601975 | 4.4:+14466376 | MS.gene08927:intron |
| CTAAATGCTCCAAAAGCTTG+AGG | 0.602109 | 4.4:-14467967 | None:intergenic |
| CATGACCTAGCGGAGATCCA+TGG | 0.602172 | 4.4:-14466949 | None:intergenic |
| CAGTTGCTCCCATATATACA+GGG | 0.602896 | 4.4:-14468274 | None:intergenic |
| TTAGAGTGACTTACAGAGAA+GGG | 0.603250 | 4.4:-14462284 | None:intergenic |
| GAAGCGGTTCTAGGAAACAT+AGG | 0.603896 | 4.4:-14469631 | None:intergenic |
| AGTAATAGGATCCTTGTACA+AGG | 0.606933 | 4.4:-14464507 | None:intergenic |
| AGTGTTTCTGCTGCAAATGG+AGG | 0.607240 | 4.4:+14469287 | MS.gene08927:CDS |
| GGAGGCCATCTTGTTGTGCA+AGG | 0.609728 | 4.4:+14468902 | MS.gene08927:CDS |
| GCTTTAATCGATATTCAACC+CGG | 0.613037 | 4.4:+14466833 | MS.gene08927:CDS |
| TGAGACGACCCAGGTTTGTG+CGG | 0.620787 | 4.4:-14464451 | None:intergenic |
| TGTACCTTGTGTTGGTGAAG+CGG | 0.622459 | 4.4:+14468244 | MS.gene08927:CDS |
| ATTAGAGTGACTTACAGAGA+AGG | 0.622491 | 4.4:-14462285 | None:intergenic |
| TAGGACTTCATATTAAGAGG+TGG | 0.624381 | 4.4:+14465307 | MS.gene08927:intron |
| AGAGTATAGCTATCATCTGG+AGG | 0.624416 | 4.4:+14464834 | MS.gene08927:CDS |
| ATAGATGCCAATTTCTCCAA+GGG | 0.625023 | 4.4:+14465013 | MS.gene08927:CDS |
| AATAGATGCCAATTTCTCCA+AGG | 0.627081 | 4.4:+14465012 | MS.gene08927:CDS |
| CCTGTGATAGACAATGATGT+TGG | 0.628362 | 4.4:+14466425 | MS.gene08927:CDS |
| GAAGAGTACACAATGTATGG+AGG | 0.628430 | 4.4:+14467715 | MS.gene08927:CDS |
| GAAGGGAACCAATAAAGAGG+AGG | 0.628826 | 4.4:-14462267 | None:intergenic |
| GTGGCGCCATGTGTCAGCTG+AGG | 0.628901 | 4.4:-14462148 | None:intergenic |
| AAGAGTACACAATGTATGGA+GGG | 0.632020 | 4.4:+14467716 | MS.gene08927:CDS |
| GAGTATAGCTATCATCTGGA+GGG | 0.636952 | 4.4:+14464835 | MS.gene08927:CDS |
| TGAGGACTCTACGGCTGACG+AGG | 0.637199 | 4.4:-14462170 | None:intergenic |
| GCAATTTGGAGGTTCAACAA+AGG | 0.638687 | 4.4:-14464696 | None:intergenic |
| GCAATATTAAGTACAGAACC+AGG | 0.641645 | 4.4:-14464767 | None:intergenic |
| GCTGAGGAGAGTGAAGAGAG+TGG | 0.642669 | 4.4:-14462132 | None:intergenic |
| CCAGATGATGTACCTTGTGT+TGG | 0.644504 | 4.4:+14468236 | MS.gene08927:CDS |
| TTGCATCCTGTTATATCATG+GGG | 0.646094 | 4.4:+14467932 | MS.gene08927:CDS |
| GGACTCTACGGCTGACGAGG+TGG | 0.659775 | 4.4:-14462167 | None:intergenic |
| AATGCCGCTTTACAAAGGAA+AGG | 0.670295 | 4.4:+14468340 | MS.gene08927:CDS |
| GACAGGATACGATTCTGATG+CGG | 0.675497 | 4.4:+14469343 | MS.gene08927:CDS |
| TTTCCAAAACCATGACCTAG+CGG | 0.677256 | 4.4:-14466959 | None:intergenic |
| TCTTCTGACCCATCAAAACA+CGG | 0.682602 | 4.4:+14464731 | MS.gene08927:CDS |
| AAGCCCGCTTCACCAACACA+AGG | 0.728951 | 4.4:-14468248 | None:intergenic |
| CCTTTGCATCGGAAACACGG+AGG | 0.773889 | 4.4:-14465162 | None:intergenic |
| TCTGACCCATCAAAACACGG+AGG | 0.817018 | 4.4:+14464734 | MS.gene08927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14462030 | 14469723 | 14462030 | ID=MS.gene08927 |
| chr4.4 | mRNA | 14462030 | 14469723 | 14462030 | ID=MS.gene08927.t1;Parent=MS.gene08927 |
| chr4.4 | exon | 14462030 | 14462292 | 14462030 | ID=MS.gene08927.t1.exon1;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14462030 | 14462292 | 14462030 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14464439 | 14464571 | 14464439 | ID=MS.gene08927.t1.exon2;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14464439 | 14464571 | 14464439 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14464659 | 14464921 | 14464659 | ID=MS.gene08927.t1.exon3;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14464659 | 14464921 | 14464659 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14464997 | 14465198 | 14464997 | ID=MS.gene08927.t1.exon4;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14464997 | 14465198 | 14464997 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14465310 | 14465350 | 14465310 | ID=MS.gene08927.t1.exon5;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14465310 | 14465350 | 14465310 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14466385 | 14466513 | 14466385 | ID=MS.gene08927.t1.exon6;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14466385 | 14466513 | 14466385 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14466622 | 14466695 | 14466622 | ID=MS.gene08927.t1.exon7;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14466622 | 14466695 | 14466622 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14466771 | 14466991 | 14466771 | ID=MS.gene08927.t1.exon8;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14466771 | 14466991 | 14466771 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14467665 | 14467759 | 14467665 | ID=MS.gene08927.t1.exon9;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14467665 | 14467759 | 14467665 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14467828 | 14468044 | 14467828 | ID=MS.gene08927.t1.exon10;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14467828 | 14468044 | 14467828 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14468236 | 14468361 | 14468236 | ID=MS.gene08927.t1.exon11;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14468236 | 14468361 | 14468236 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14468863 | 14468961 | 14468863 | ID=MS.gene08927.t1.exon12;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14468863 | 14468961 | 14468863 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14469218 | 14469424 | 14469218 | ID=MS.gene08927.t1.exon13;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14469218 | 14469424 | 14469218 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| chr4.4 | exon | 14469610 | 14469723 | 14469610 | ID=MS.gene08927.t1.exon14;Parent=MS.gene08927.t1 |
| chr4.4 | CDS | 14469610 | 14469723 | 14469610 | ID=cds.MS.gene08927.t1;Parent=MS.gene08927.t1 |
| Gene Sequence |
| Protein sequence |
