Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09019.t1 | KEH20613.1 | 97.2 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.00E+00 | 1830.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09019.t1 | Q9FYG2 | 51.9 | 981 | 402 | 17 | 5 | 939 | 34 | 990 | 4.2e-250 | 865.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09019.t1 | A0A072TUT2 | 97.2 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.0e+00 | 1830.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09019.t1 | TF | CAMTA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene09019 | 0.817976 | 2.49E-52 | -1.69E-46 |
| MS.gene051960 | MS.gene09019 | 0.824136 | 9.51E-54 | -1.69E-46 |
| MS.gene057001 | MS.gene09019 | 0.859844 | 3.12E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09019.t1 | MTR_8g080800 | 97.190 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.0 | 1946 |
| MS.gene09019.t1 | MTR_3g085050 | 60.041 | 986 | 321 | 12 | 1 | 957 | 1 | 942 | 0.0 | 1097 |
| MS.gene09019.t1 | MTR_3g085050 | 60.354 | 961 | 310 | 11 | 1 | 934 | 1 | 917 | 0.0 | 1082 |
| MS.gene09019.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 399 | 986 | 7.83e-133 | 425 |
| MS.gene09019.t1 | MTR_2g008840 | 49.007 | 151 | 65 | 4 | 36 | 179 | 2 | 147 | 2.17e-35 | 146 |
| MS.gene09019.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 439 | 1026 | 3.28e-132 | 424 |
| MS.gene09019.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 4.10e-45 | 177 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 8.76e-128 | 409 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 1.23e-127 | 409 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 1.83e-126 | 409 |
| MS.gene09019.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.28e-46 | 180 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 2.17e-126 | 410 |
| MS.gene09019.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.78e-46 | 180 |
| MS.gene09019.t1 | MTR_4g121840 | 33.299 | 970 | 521 | 29 | 6 | 935 | 24 | 907 | 2.18e-126 | 405 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 2.27e-126 | 409 |
| MS.gene09019.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.18e-45 | 179 |
| MS.gene09019.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 2.87e-126 | 409 |
| MS.gene09019.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.26e-45 | 179 |
| MS.gene09019.t1 | MTR_4g094215 | 39.165 | 623 | 304 | 19 | 388 | 959 | 426 | 1024 | 3.24e-121 | 394 |
| MS.gene09019.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.44e-42 | 169 |
| MS.gene09019.t1 | MTR_4g094215 | 39.228 | 622 | 304 | 19 | 388 | 959 | 426 | 1023 | 3.60e-121 | 394 |
| MS.gene09019.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.59e-42 | 169 |
| MS.gene09019.t1 | MTR_4g121840 | 33.477 | 929 | 492 | 29 | 47 | 935 | 35 | 877 | 5.65e-116 | 377 |
| MS.gene09019.t1 | MTR_8g090205 | 39.440 | 464 | 247 | 9 | 394 | 840 | 498 | 944 | 7.36e-92 | 313 |
| MS.gene09019.t1 | MTR_8g090205 | 50.610 | 164 | 68 | 2 | 8 | 158 | 12 | 175 | 1.21e-45 | 178 |
| MS.gene09019.t1 | MTR_2g008840 | 38.289 | 491 | 233 | 14 | 388 | 839 | 439 | 898 | 1.69e-91 | 311 |
| MS.gene09019.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 2.56e-45 | 177 |
| MS.gene09019.t1 | MTR_2g034650 | 37.809 | 566 | 295 | 16 | 398 | 933 | 355 | 893 | 2.35e-87 | 300 |
| MS.gene09019.t1 | MTR_2g034650 | 51.034 | 145 | 69 | 1 | 6 | 150 | 23 | 165 | 4.42e-40 | 160 |
| MS.gene09019.t1 | MTR_4g094215 | 37.137 | 482 | 251 | 12 | 388 | 839 | 426 | 885 | 4.14e-86 | 296 |
| MS.gene09019.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.21e-42 | 169 |
| MS.gene09019.t1 | MTR_8g090200 | 27.465 | 426 | 223 | 18 | 117 | 489 | 14 | 406 | 4.13e-20 | 94.4 |
| MS.gene09019.t1 | MTR_4g123740 | 50.000 | 66 | 29 | 2 | 70 | 135 | 6 | 67 | 9.68e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09019.t1 | AT1G67310 | 52.434 | 986 | 393 | 21 | 3 | 939 | 32 | 990 | 0.0 | 902 |
| MS.gene09019.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 276 | 872 | 1.16e-124 | 400 |
| MS.gene09019.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 379 | 975 | 1.57e-123 | 400 |
| MS.gene09019.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.31e-45 | 178 |
| MS.gene09019.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 397 | 993 | 2.34e-123 | 400 |
| MS.gene09019.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.41e-45 | 178 |
| MS.gene09019.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 456 | 1052 | 2.22e-122 | 399 |
| MS.gene09019.t1 | AT5G09410 | 44.910 | 167 | 62 | 1 | 1 | 137 | 69 | 235 | 1.40e-40 | 162 |
| MS.gene09019.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 396 | 921 | 1.81e-121 | 394 |
| MS.gene09019.t1 | AT2G22300 | 38.919 | 185 | 106 | 3 | 53 | 235 | 1 | 180 | 4.76e-31 | 132 |
| MS.gene09019.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 9.35e-121 | 393 |
| MS.gene09019.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
| MS.gene09019.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 9.35e-121 | 393 |
| MS.gene09019.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
| MS.gene09019.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.10e-120 | 394 |
| MS.gene09019.t1 | AT5G64220 | 49.711 | 173 | 74 | 1 | 8 | 180 | 14 | 173 | 5.02e-48 | 186 |
| MS.gene09019.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.10e-120 | 394 |
| MS.gene09019.t1 | AT5G64220 | 49.711 | 173 | 74 | 1 | 8 | 180 | 14 | 173 | 5.02e-48 | 186 |
| MS.gene09019.t1 | AT3G16940 | 31.295 | 687 | 400 | 22 | 291 | 935 | 155 | 811 | 3.49e-79 | 275 |
| MS.gene09019.t1 | AT3G16940 | 48.993 | 149 | 75 | 1 | 12 | 160 | 1 | 148 | 8.17e-38 | 153 |
| MS.gene09019.t1 | AT3G16940 | 31.295 | 687 | 400 | 22 | 291 | 935 | 182 | 838 | 4.64e-79 | 275 |
| MS.gene09019.t1 | AT3G16940 | 47.742 | 155 | 80 | 1 | 6 | 160 | 22 | 175 | 7.88e-39 | 156 |
| MS.gene09019.t1 | AT3G16940 | 29.915 | 585 | 346 | 18 | 291 | 838 | 182 | 739 | 1.96e-56 | 209 |
| MS.gene09019.t1 | AT3G16940 | 53.030 | 132 | 62 | 0 | 6 | 137 | 22 | 153 | 3.55e-39 | 157 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGCATAGTAACAATTTA+TGG | 0.140587 | 4.4:-15296793 | None:intergenic |
| TTCACCATCTTCTTCATTAA+TGG | 0.149051 | 4.4:+15299624 | MS.gene09019:CDS |
| AGAAACCTCAGCTGACTTTA+AGG | 0.172864 | 4.4:+15297777 | MS.gene09019:CDS |
| ATTATAGAGGCTCTACTATT+TGG | 0.207358 | 4.4:+15300986 | MS.gene09019:CDS |
| GGAAGCATTACAAAGTATTA+TGG | 0.222235 | 4.4:+15302519 | MS.gene09019:CDS |
| AATAATCCCCTGCTCTTTCT+TGG | 0.231755 | 4.4:-15301128 | None:intergenic |
| AAAACAGAAATTTACTATTA+AGG | 0.252298 | 4.4:+15299961 | MS.gene09019:CDS |
| CTTCATTGGGCTGCACGTTT+TGG | 0.253483 | 4.4:+15301247 | MS.gene09019:CDS |
| GGGATTATTCACATGGTTGC+TGG | 0.262638 | 4.4:+15301142 | MS.gene09019:CDS |
| GCCAGGCATGACCATCTTTC+CGG | 0.272852 | 4.4:-15296151 | None:intergenic |
| CTGTTATTACTTGTTAGATT+TGG | 0.278401 | 4.4:+15300869 | MS.gene09019:CDS |
| CTTTGTAATGCTTCCTAACT+TGG | 0.282011 | 4.4:-15302511 | None:intergenic |
| CCCTTGATGATTCTGTGGTT+TGG | 0.285385 | 4.4:-15297902 | None:intergenic |
| ACTTCCTCCATATTCTTCTA+TGG | 0.286754 | 4.4:+15299838 | MS.gene09019:CDS |
| GTTACTCTGTGCATTACTTC+TGG | 0.291948 | 4.4:+15300737 | MS.gene09019:CDS |
| GGAGAAAAGGAGTCGGTTTA+CGG | 0.298490 | 4.4:+15302579 | MS.gene09019:CDS |
| ATGGGTGGACTGCCCTTCAT+TGG | 0.305451 | 4.4:+15301233 | MS.gene09019:CDS |
| TCAGAGGAATAACCCCATTC+TGG | 0.307135 | 4.4:-15299992 | None:intergenic |
| CATCATGAGATGCTCCAATT+TGG | 0.318825 | 4.4:-15299913 | None:intergenic |
| TTGTTTGACCAAAGCCAAAT+TGG | 0.322075 | 4.4:+15299899 | MS.gene09019:CDS |
| CTTTCCAGAGGCGGAGCTAT+TGG | 0.324977 | 4.4:+15296832 | MS.gene09019:CDS |
| AGTTCCTGTTGAGCTAATTC+AGG | 0.325656 | 4.4:+15300670 | MS.gene09019:CDS |
| TTTGGCAGTGAAAATTCTTC+TGG | 0.330125 | 4.4:+15301004 | MS.gene09019:CDS |
| GTCATCCCTCTGATTCTGCC+TGG | 0.330295 | 4.4:+15300624 | MS.gene09019:CDS |
| ATTCACATGGTTGCTGGGTT+GGG | 0.335295 | 4.4:+15301148 | MS.gene09019:CDS |
| TTCACTTGTTTGTGCAAGTT+CGG | 0.338414 | 4.4:-15303050 | None:intergenic |
| TGTTACTTGTTGGCTGTTGC+GGG | 0.338603 | 4.4:-15295543 | None:intergenic |
| ATTATGGGCAGTTGGAATCT+TGG | 0.340243 | 4.4:+15302535 | MS.gene09019:CDS |
| TGTTATTACTTGTTAGATTT+GGG | 0.340702 | 4.4:+15300870 | MS.gene09019:CDS |
| GTTTCATCCATAGAAGAATA+TGG | 0.341126 | 4.4:-15299845 | None:intergenic |
| TAAAATAGCCCCTGGTTATC+TGG | 0.347146 | 4.4:-15297964 | None:intergenic |
| AGCTTCATGCTCGTTGTAGA+AGG | 0.349283 | 4.4:-15297869 | None:intergenic |
| ATAGTAGAGCCTCTATAATA+TGG | 0.356170 | 4.4:-15300982 | None:intergenic |
| GAAGAGTATTACGTTTCTTC+CGG | 0.359417 | 4.4:+15296132 | MS.gene09019:CDS |
| GAAGTTCCATCTCACATTCC+TGG | 0.365550 | 4.4:+15300710 | MS.gene09019:CDS |
| TTCATCTACTTCCCGAGATC+TGG | 0.365870 | 4.4:-15301086 | None:intergenic |
| ATTCTTCTGGTACTATCAAT+TGG | 0.373127 | 4.4:+15301017 | MS.gene09019:CDS |
| TGCAGCTAGCAGCGGGCATA+AGG | 0.374436 | 4.4:+15301639 | MS.gene09019:CDS |
| TAACAGCTCATCTGGAGTTC+TGG | 0.376239 | 4.4:-15300852 | None:intergenic |
| TATTCACATGGTTGCTGGGT+TGG | 0.377002 | 4.4:+15301147 | MS.gene09019:CDS |
| CCAATTGGATCTTGTGCACT+TGG | 0.378723 | 4.4:-15301598 | None:intergenic |
| ATGTGAGAGGTTACCAAGTT+AGG | 0.379390 | 4.4:+15302498 | MS.gene09019:CDS |
| GAGAAAAGGAGTCGGTTTAC+GGG | 0.381739 | 4.4:+15302580 | MS.gene09019:CDS |
| GTTGCATCACTTATAGCTTC+TGG | 0.385172 | 4.4:+15301550 | MS.gene09019:CDS |
| AGTCATTCCATTGTTATAAG+AGG | 0.386448 | 4.4:-15297728 | None:intergenic |
| CCATCCTGAATTAGCTCAAC+AGG | 0.389513 | 4.4:-15300674 | None:intergenic |
| GCTTCTCTTTCCAATGGAGC+AGG | 0.391039 | 4.4:-15300827 | None:intergenic |
| CATTTCCATCAGGGAAATCA+TGG | 0.392414 | 4.4:-15299430 | None:intergenic |
| GAAGCATTACAAAGTATTAT+GGG | 0.396758 | 4.4:+15302520 | MS.gene09019:CDS |
| ATAGCTTCTGGTGCATCTGC+TGG | 0.404064 | 4.4:+15301562 | MS.gene09019:CDS |
| ATGCACAGAGTAACCTTTCC+AGG | 0.407884 | 4.4:-15300728 | None:intergenic |
| CATCCATTGCAGCTAGCAGC+GGG | 0.408752 | 4.4:+15301632 | MS.gene09019:CDS |
| ACAAGTAATAACAGCTCATC+TGG | 0.410138 | 4.4:-15300860 | None:intergenic |
| TTGTAGGGAAGGCTCAGTTC+TGG | 0.411053 | 4.4:+15297559 | MS.gene09019:intron |
| GAGATGCTCCAATTTGGCTT+TGG | 0.415155 | 4.4:-15299907 | None:intergenic |
| TGTGCATTACTTCTGGAAAC+CGG | 0.420398 | 4.4:+15300744 | MS.gene09019:CDS |
| TCAAGCTTTGCGCCGATTGG+AGG | 0.420689 | 4.4:+15297804 | MS.gene09019:CDS |
| CTGGTGGCTTCTCTTTCCAA+TGG | 0.422838 | 4.4:-15300833 | None:intergenic |
| TCACACCGCAACTGAGAATA+GGG | 0.423019 | 4.4:-15301189 | None:intergenic |
| AGCAGGGTCGGTGAAATTCT+TGG | 0.425679 | 4.4:-15300810 | None:intergenic |
| TACTCAAGCTTTGCGCCGAT+TGG | 0.428909 | 4.4:+15297801 | MS.gene09019:CDS |
| GAGGAATCCACAGCTCTCTC+TGG | 0.431726 | 4.4:+15297940 | MS.gene09019:CDS |
| TCTGCCTGGGCCTGTATGCT+TGG | 0.432274 | 4.4:+15300638 | MS.gene09019:CDS |
| TCATATAGTACTCAGAATCC+AGG | 0.436097 | 4.4:+15297634 | MS.gene09019:CDS |
| TGGGTGGACTGCCCTTCATT+GGG | 0.436536 | 4.4:+15301234 | MS.gene09019:CDS |
| GGATTATTCACATGGTTGCT+GGG | 0.437285 | 4.4:+15301143 | MS.gene09019:CDS |
| TTTCACCGACCCTGCTCCAT+TGG | 0.437455 | 4.4:+15300817 | MS.gene09019:CDS |
| TAAGGCAGTCTCCCCAGAAT+GGG | 0.443176 | 4.4:+15299979 | MS.gene09019:CDS |
| GAAGCTCTGATTAGGTTCAT+AGG | 0.447215 | 4.4:-15297680 | None:intergenic |
| AGCGGGCATAAGGGACTGGC+AGG | 0.447828 | 4.4:+15301649 | MS.gene09019:CDS |
| TGATATTGCTCACGAGCATC+AGG | 0.448217 | 4.4:-15302728 | None:intergenic |
| CCATCTGTCATCTCTTACAC+TGG | 0.451970 | 4.4:+15301699 | MS.gene09019:CDS |
| CAGAGGAATAACCCCATTCT+GGG | 0.453671 | 4.4:-15299991 | None:intergenic |
| CAAAACGTGCAGCCCAATGA+AGG | 0.453699 | 4.4:-15301246 | None:intergenic |
| ATGTTACTTGTTGGCTGTTG+CGG | 0.454201 | 4.4:-15295544 | None:intergenic |
| CCCGGTGACAATTGTGTGCC+AGG | 0.454642 | 4.4:-15297583 | None:intergenic |
| AAGTAATGATAACAACGAAT+CGG | 0.457105 | 4.4:+15300919 | MS.gene09019:CDS |
| GATCACATTCATTTAGAAAA+CGG | 0.457488 | 4.4:+15301890 | MS.gene09019:CDS |
| ATAAATTTCCGTGATGTCAA+TGG | 0.460639 | 4.4:+15301214 | MS.gene09019:CDS |
| AGAAGGCTGATGATGATTCA+TGG | 0.462726 | 4.4:+15300957 | MS.gene09019:CDS |
| AAAAGAGATGGAAGAGCTGT+AGG | 0.467414 | 4.4:+15296179 | MS.gene09019:CDS |
| AGTAGATGTGGAAATTGAAA+AGG | 0.467562 | 4.4:+15302673 | MS.gene09019:CDS |
| GGACTGGAGAAGCTCTGATT+AGG | 0.467985 | 4.4:-15297688 | None:intergenic |
| TCATCCCTCTGATTCTGCCT+GGG | 0.473426 | 4.4:+15300625 | MS.gene09019:CDS |
| TTACGTTTCTTCCGGAAAGA+TGG | 0.474223 | 4.4:+15296140 | MS.gene09019:CDS |
| TAGCTCCGCCTCTGGAAAGT+AGG | 0.474330 | 4.4:-15296828 | None:intergenic |
| GTGCTAAGATGGCGGAGAAA+AGG | 0.474475 | 4.4:+15302566 | MS.gene09019:CDS |
| TTCACACCGCAACTGAGAAT+AGG | 0.474658 | 4.4:-15301190 | None:intergenic |
| TATATTCTTGTAGGTGATAG+TGG | 0.478429 | 4.4:+15299383 | MS.gene09019:intron |
| CGTGGCTTACTTCCAGATCT+CGG | 0.478848 | 4.4:+15301074 | MS.gene09019:CDS |
| TTCTTTGTCCAAGAAAGAGC+AGG | 0.480183 | 4.4:+15301120 | MS.gene09019:CDS |
| TAAACAACGGACGTTGACCC+TGG | 0.483608 | 4.4:-15297652 | None:intergenic |
| TCTTCTTCTACCATGACATC+TGG | 0.484799 | 4.4:+15294950 | None:intergenic |
| AATCAGAGCTTCTCCAGTCC+TGG | 0.487676 | 4.4:+15297691 | MS.gene09019:CDS |
| GCTTCTTGAAGAGCTACTAA+AGG | 0.488943 | 4.4:+15301039 | MS.gene09019:CDS |
| TTCAGAAGAAATATCGAGGT+TGG | 0.489389 | 4.4:+15302049 | MS.gene09019:CDS |
| AATGCACCTTCAGCCGTTCG+TGG | 0.490374 | 4.4:-15296208 | None:intergenic |
| AGTAATGATAACAACGAATC+GGG | 0.494514 | 4.4:+15300920 | MS.gene09019:CDS |
| GAAATGAAAAGGCTCTATCA+TGG | 0.494556 | 4.4:+15299447 | MS.gene09019:CDS |
| TGACTTCACTGCATGACTCC+CGG | 0.494680 | 4.4:-15300763 | None:intergenic |
| GCAACTGAGAATAGGGTTCA+AGG | 0.496854 | 4.4:-15301182 | None:intergenic |
| ACATCCAATAGCTCCGCCTC+TGG | 0.497187 | 4.4:-15296836 | None:intergenic |
| GAGGTAACTTCTGCAGATCC+AGG | 0.497445 | 4.4:-15297709 | None:intergenic |
| TGGACAAGGTTGTGCTAAGA+TGG | 0.498360 | 4.4:+15302555 | MS.gene09019:CDS |
| GCATCCATTGCAGCTAGCAG+CGG | 0.501501 | 4.4:+15301631 | MS.gene09019:CDS |
| TAAATTTCCGTGATGTCAAT+GGG | 0.503471 | 4.4:+15301215 | MS.gene09019:CDS |
| CTAGACCATGATTTCCCTGA+TGG | 0.505531 | 4.4:+15299425 | MS.gene09019:CDS |
| TAGCAGCGGGCATAAGGGAC+TGG | 0.507308 | 4.4:+15301645 | MS.gene09019:CDS |
| TTTCCCTGATGGAAATGAAA+AGG | 0.507835 | 4.4:+15299436 | MS.gene09019:CDS |
| AATTTCAACACTGATAATGC+TGG | 0.508070 | 4.4:+15299682 | MS.gene09019:CDS |
| ATCATCCCTTGATGATTCTG+TGG | 0.509626 | 4.4:-15297907 | None:intergenic |
| AACTTAACTGCACCTCCAAT+CGG | 0.509739 | 4.4:-15297816 | None:intergenic |
| TACAAAGTATTATGGGCAGT+TGG | 0.512430 | 4.4:+15302527 | MS.gene09019:CDS |
| TGTATTTCTGACAGCAGCTA+AGG | 0.517159 | 4.4:-15301833 | None:intergenic |
| GTGGCTTACTTCCAGATCTC+GGG | 0.517721 | 4.4:+15301075 | MS.gene09019:CDS |
| ATGCCCGCTGCTAGCTGCAA+TGG | 0.519565 | 4.4:-15301635 | None:intergenic |
| CGAACCCGGAAAACTATAGC+TGG | 0.519978 | 4.4:+15299656 | MS.gene09019:CDS |
| ACCTGGCACACAATTGTCAC+CGG | 0.520234 | 4.4:+15297582 | MS.gene09019:CDS |
| CCAAGTGCACAAGATCCAAT+TGG | 0.522680 | 4.4:+15301598 | MS.gene09019:CDS |
| TCCAAACCACAGAATCATCA+AGG | 0.522957 | 4.4:+15297901 | MS.gene09019:CDS |
| AAAATGTACATCACTTCTGC+AGG | 0.523652 | 4.4:-15295484 | None:intergenic |
| TTCAACATCACCAAGCATAC+AGG | 0.525286 | 4.4:-15300648 | None:intergenic |
| TCCGGAAAGATGGTCATGCC+TGG | 0.525525 | 4.4:+15296150 | MS.gene09019:CDS |
| GGGTTTCAAACCAGAGATGC+AGG | 0.526149 | 4.4:+15302601 | MS.gene09019:CDS |
| AAGAAATATCGAGGTTGGAA+AGG | 0.529924 | 4.4:+15302054 | MS.gene09019:CDS |
| GCAGCTAGCAGCGGGCATAA+GGG | 0.531238 | 4.4:+15301640 | MS.gene09019:CDS |
| ATCACCAAGCATACAGGCCC+AGG | 0.535400 | 4.4:-15300642 | None:intergenic |
| CTTGACATAGCATAAAGCTC+TGG | 0.536851 | 4.4:-15301979 | None:intergenic |
| AGCTCCGCCTCTGGAAAGTA+GGG | 0.537194 | 4.4:-15296827 | None:intergenic |
| TTAAGGCAGTCTCCCCAGAA+TGG | 0.537679 | 4.4:+15299978 | MS.gene09019:CDS |
| GCTACTAAAGGATAAGCTAC+AGG | 0.543205 | 4.4:+15301051 | MS.gene09019:CDS |
| TCCATCTCACATTCCTGGAA+AGG | 0.544442 | 4.4:+15300715 | MS.gene09019:CDS |
| ATTGGAGCATCTCATGATGC+TGG | 0.547038 | 4.4:+15299917 | MS.gene09019:CDS |
| TCTCTCTGGACCAGATAACC+AGG | 0.547626 | 4.4:+15297954 | MS.gene09019:CDS |
| TTCATGGAGCCATATTATAG+AGG | 0.548594 | 4.4:+15300973 | MS.gene09019:CDS |
| GCAATACTTACATTTCCTGC+TGG | 0.549061 | 4.4:-15299485 | None:intergenic |
| AACTGTTAGTAATGTCTCCA+AGG | 0.549109 | 4.4:+15301768 | MS.gene09019:CDS |
| ATGCACCTTCAGCCGTTCGT+GGG | 0.549348 | 4.4:-15296207 | None:intergenic |
| AACTTCTGCAGATCCAGGAC+TGG | 0.551466 | 4.4:-15297704 | None:intergenic |
| ATCAAGAAGCTCAAAGGAGG+TGG | 0.554450 | 4.4:+15295455 | MS.gene09019:CDS |
| GTGCATTACTTCTGGAAACC+GGG | 0.556150 | 4.4:+15300745 | MS.gene09019:CDS |
| GATGGATATAATGGAAGGCA+AGG | 0.559300 | 4.4:+15297988 | MS.gene09019:CDS |
| TCTTTCCAATGGAGCAGGGT+CGG | 0.560531 | 4.4:-15300822 | None:intergenic |
| GGTGCAGTTAAGTTTGAATG+AGG | 0.561643 | 4.4:+15297825 | MS.gene09019:CDS |
| AGAAGCCCACGAACGGCTGA+AGG | 0.562890 | 4.4:+15296202 | MS.gene09019:CDS |
| ATCTGTATCAAGAAGCTCAA+AGG | 0.564701 | 4.4:+15295449 | MS.gene09019:CDS |
| ACCTTTCCAGGAATGTGAGA+TGG | 0.568391 | 4.4:-15300716 | None:intergenic |
| GTTACTTGTTGGCTGTTGCG+GGG | 0.569067 | 4.4:-15295542 | None:intergenic |
| TTACTTGTTGGCTGTTGCGG+GGG | 0.569205 | 4.4:-15295541 | None:intergenic |
| TACAACGAGCATGAAGCTAC+CGG | 0.569270 | 4.4:+15297874 | MS.gene09019:CDS |
| GGTTCCATTAATGAAGAAGA+TGG | 0.570466 | 4.4:-15299628 | None:intergenic |
| TTTATGATGGATATAATGGA+AGG | 0.570899 | 4.4:+15297983 | MS.gene09019:CDS |
| GATATAAGTGCAAGTAGTGT+TGG | 0.571594 | 4.4:+15301949 | MS.gene09019:CDS |
| TCGGGAAGTAGATGAAGAGA+CGG | 0.571607 | 4.4:+15301093 | MS.gene09019:CDS |
| GGAAGGCTCAGTTCTGGACC+TGG | 0.571723 | 4.4:+15297565 | MS.gene09019:CDS |
| ATTCTGTGGTTTGGAATCAC+CGG | 0.571949 | 4.4:-15297893 | None:intergenic |
| GGACTATACGCAGAAGAACC+CGG | 0.572116 | 4.4:-15297601 | None:intergenic |
| AGAAAAGGAGTCGGTTTACG+GGG | 0.574601 | 4.4:+15302581 | MS.gene09019:CDS |
| CTTCTCTTTCCAATGGAGCA+GGG | 0.575366 | 4.4:-15300826 | None:intergenic |
| GAAACAAATGCTGTTATGAG+TGG | 0.575428 | 4.4:+15301922 | MS.gene09019:CDS |
| ATCCATCATAAAATAGCCCC+TGG | 0.576549 | 4.4:-15297972 | None:intergenic |
| GAAGTTACCTCTTATAACAA+TGG | 0.577185 | 4.4:+15297721 | MS.gene09019:CDS |
| ACATGTGTTACCAGATGTCA+TGG | 0.577892 | 4.4:-15294960 | None:intergenic |
| ATGTTCACGTGAGTTTCGAA+AGG | 0.582903 | 4.4:-15302007 | None:intergenic |
| GCCTGGCGGAAGAAAAGAGA+TGG | 0.583866 | 4.4:+15296167 | MS.gene09019:CDS |
| TGCTGTCAGAAATACAACTC+AGG | 0.587231 | 4.4:+15301840 | MS.gene09019:CDS |
| TGTCTCAAGAGTGCTGTCCA+TGG | 0.588545 | 4.4:+15302697 | MS.gene09019:CDS |
| CAGCTCATCTGGAGTTCTGG+TGG | 0.594570 | 4.4:-15300849 | None:intergenic |
| ACAGGCCCAGGCAGAATCAG+AGG | 0.594590 | 4.4:-15300630 | None:intergenic |
| ATATTGCTTTCAGTGAGGAT+CGG | 0.596772 | 4.4:+15301794 | MS.gene09019:CDS |
| TTTGTGTAGGCTCATGTGAG+AGG | 0.599137 | 4.4:+15302485 | MS.gene09019:intron |
| AAAACGTGCAGCCCAATGAA+GGG | 0.600218 | 4.4:-15301245 | None:intergenic |
| TTCTGAGTACTATATGAGCT+AGG | 0.601385 | 4.4:-15297628 | None:intergenic |
| TTGAACCCTATTCTCAGTTG+CGG | 0.604424 | 4.4:+15301184 | MS.gene09019:CDS |
| GCTTCATGCTCGTTGTAGAA+GGG | 0.605012 | 4.4:-15297868 | None:intergenic |
| TCTTTGTCCAAGAAAGAGCA+GGG | 0.605633 | 4.4:+15301121 | MS.gene09019:CDS |
| CCTGGCACACAATTGTCACC+GGG | 0.606469 | 4.4:+15297583 | MS.gene09019:CDS |
| AATGGAACCAGTTACGAACC+CGG | 0.608529 | 4.4:+15299642 | MS.gene09019:CDS |
| CCAGTGTAAGAGATGACAGA+TGG | 0.610309 | 4.4:-15301699 | None:intergenic |
| TTATTCCTCTGAGACTACAA+AGG | 0.612910 | 4.4:+15300003 | MS.gene09019:CDS |
| AGGGATGATGTGCAAGCAAG+AGG | 0.613198 | 4.4:+15297921 | MS.gene09019:CDS |
| CAGTCCACCCATTGACATCA+CGG | 0.613503 | 4.4:-15301222 | None:intergenic |
| CGGGAAGTAGATGAAGAGAC+GGG | 0.614610 | 4.4:+15301094 | MS.gene09019:CDS |
| CATATAGTACTCAGAATCCA+GGG | 0.621356 | 4.4:+15297635 | MS.gene09019:CDS |
| AGTAACCTTAAAGTCAGCTG+AGG | 0.622511 | 4.4:-15297782 | None:intergenic |
| CCTGTTGAGCTAATTCAGGA+TGG | 0.622578 | 4.4:+15300674 | MS.gene09019:CDS |
| CCGAAAACAGAAAGTAGATG+TGG | 0.623324 | 4.4:+15302661 | MS.gene09019:CDS |
| CTGTAGGAGAAGCCCACGAA+CGG | 0.626185 | 4.4:+15296195 | MS.gene09019:CDS |
| GCGGGCATAAGGGACTGGCA+GGG | 0.631483 | 4.4:+15301650 | MS.gene09019:CDS |
| GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 4.4:+15302541 | MS.gene09019:CDS |
| ACTGGCAGGGTATCTTTCTG+AGG | 0.634962 | 4.4:+15301663 | MS.gene09019:CDS |
| AATGGAATGACTTACTCAGA+AGG | 0.637909 | 4.4:+15297739 | MS.gene09019:CDS |
| CAGGCCCAGGCAGAATCAGA+GGG | 0.639349 | 4.4:-15300629 | None:intergenic |
| ATACAACTCAGGCAGCTGCA+CGG | 0.642481 | 4.4:+15301851 | MS.gene09019:CDS |
| GTACTATATGAGCTAGGACT+CGG | 0.643924 | 4.4:-15297622 | None:intergenic |
| CTCTCTGGACCAGATAACCA+GGG | 0.644821 | 4.4:+15297955 | MS.gene09019:CDS |
| AGAGCAGGGGATTATTCACA+TGG | 0.645001 | 4.4:+15301135 | MS.gene09019:CDS |
| CCAAACCACAGAATCATCAA+GGG | 0.649452 | 4.4:+15297902 | MS.gene09019:CDS |
| AGCTAAGGTATCTTTGAGTG+AGG | 0.652018 | 4.4:-15301818 | None:intergenic |
| TCAATTCAGAAGAAATATCG+AGG | 0.658574 | 4.4:+15302045 | MS.gene09019:CDS |
| TGTATCAAGAAGCTCAAAGG+AGG | 0.661177 | 4.4:+15295452 | MS.gene09019:CDS |
| TGAGAAGTATCGTCAAGCCA+AGG | 0.663944 | 4.4:+15302760 | MS.gene09019:CDS |
| ATAAATTGTTACTATGCACA+TGG | 0.664247 | 4.4:+15296795 | MS.gene09019:CDS |
| ACAAACCTTTGTAGTCTCAG+AGG | 0.664931 | 4.4:-15300008 | None:intergenic |
| CTTTGTCCAAGAAAGAGCAG+GGG | 0.667079 | 4.4:+15301122 | MS.gene09019:CDS |
| GGAAAATATTGCTTTCAGTG+AGG | 0.667748 | 4.4:+15301789 | MS.gene09019:CDS |
| AGAACCCTACTTTCCAGAGG+CGG | 0.671098 | 4.4:+15296823 | MS.gene09019:CDS |
| ATTTCCGTGATGTCAATGGG+TGG | 0.671605 | 4.4:+15301218 | MS.gene09019:CDS |
| GTGACTTCATCAACACCTTG+AGG | 0.672304 | 4.4:-15299815 | None:intergenic |
| TGAGCTATCTAAAAGTTCTG+CGG | 0.677458 | 4.4:+15301729 | MS.gene09019:CDS |
| AAGGCAGTCTCCCCAGAATG+GGG | 0.679096 | 4.4:+15299980 | MS.gene09019:CDS |
| AGCAGAACCCTACTTTCCAG+AGG | 0.679127 | 4.4:+15296820 | MS.gene09019:CDS |
| ATCTGGTCCAGAGAGAGCTG+TGG | 0.680189 | 4.4:-15297947 | None:intergenic |
| GGAAAGATGGTCATGCCTGG+CGG | 0.682808 | 4.4:+15296153 | MS.gene09019:CDS |
| AGATGGCGGAGAAAAGGAGT+CGG | 0.685188 | 4.4:+15302572 | MS.gene09019:CDS |
| TTCATAGGCGTCATAAACAA+CGG | 0.687883 | 4.4:-15297665 | None:intergenic |
| AGAGGAATAACCCCATTCTG+GGG | 0.688939 | 4.4:-15299990 | None:intergenic |
| ACAAGGTTGTGCTAAGATGG+CGG | 0.689666 | 4.4:+15302558 | MS.gene09019:CDS |
| AGCATCAGGAGATTTGACCA+TGG | 0.713604 | 4.4:-15302714 | None:intergenic |
| TCATCCATAGAAGAATATGG+AGG | 0.715779 | 4.4:-15299842 | None:intergenic |
| TCTCTGGACCAGATAACCAG+GGG | 0.716297 | 4.4:+15297956 | MS.gene09019:CDS |
| TAAAGGATAAGCTACAGGCG+TGG | 0.717250 | 4.4:+15301056 | MS.gene09019:CDS |
| AGATCCAATTGGTAAAACTG+CGG | 0.717630 | 4.4:+15301609 | MS.gene09019:CDS |
| TGTAATGAACGAGAACAATG+TGG | 0.718490 | 4.4:-15297130 | None:intergenic |
| TCATTACAGAGACACAAGTG+AGG | 0.732114 | 4.4:+15297145 | MS.gene09019:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15294962 | 15303132 | 15294962 | ID=MS.gene09019 |
| chr4.4 | mRNA | 15294962 | 15303132 | 15294962 | ID=MS.gene09019.t1;Parent=MS.gene09019 |
| chr4.4 | exon | 15294962 | 15294971 | 15294962 | ID=MS.gene09019.t1.exon1;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15294962 | 15294971 | 15294962 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15295428 | 15295559 | 15295428 | ID=MS.gene09019.t1.exon2;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15295428 | 15295559 | 15295428 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15296108 | 15296223 | 15296108 | ID=MS.gene09019.t1.exon3;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15296108 | 15296223 | 15296108 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15296777 | 15296865 | 15296777 | ID=MS.gene09019.t1.exon4;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15296777 | 15296865 | 15296777 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15297121 | 15297166 | 15297121 | ID=MS.gene09019.t1.exon5;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15297121 | 15297166 | 15297121 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15297565 | 15298009 | 15297565 | ID=MS.gene09019.t1.exon6;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15297565 | 15298009 | 15297565 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15299396 | 15299496 | 15299396 | ID=MS.gene09019.t1.exon7;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15299396 | 15299496 | 15299396 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15299619 | 15299709 | 15299619 | ID=MS.gene09019.t1.exon8;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15299619 | 15299709 | 15299619 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15299801 | 15300024 | 15299801 | ID=MS.gene09019.t1.exon9;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15299801 | 15300024 | 15299801 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15300599 | 15301272 | 15300599 | ID=MS.gene09019.t1.exon10;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15300599 | 15301272 | 15300599 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15301540 | 15302122 | 15301540 | ID=MS.gene09019.t1.exon11;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15301540 | 15302122 | 15301540 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15302494 | 15302781 | 15302494 | ID=MS.gene09019.t1.exon12;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15302494 | 15302781 | 15302494 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| chr4.4 | exon | 15303049 | 15303132 | 15303049 | ID=MS.gene09019.t1.exon13;Parent=MS.gene09019.t1 |
| chr4.4 | CDS | 15303049 | 15303132 | 15303049 | ID=cds.MS.gene09019.t1;Parent=MS.gene09019.t1 |
| Gene Sequence |
| Protein sequence |
