Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09062.t1 | XP_024627888.1 | 98.4 | 382 | 6 | 0 | 1 | 382 | 69 | 450 | 6.50E-214 | 753.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09062.t1 | Q08448 | 27.0 | 237 | 133 | 8 | 22 | 251 | 6 | 209 | 5.3e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09062.t1 | G7LIR3 | 98.2 | 383 | 6 | 1 | 1 | 382 | 69 | 451 | 1.2e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene09062 | -0.829638 | 4.60E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene09062 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene050818 | MS.gene09062 | -0.82268 | 2.08E-53 | -1.69E-46 |
| MS.gene050894 | MS.gene09062 | -0.823459 | 1.37E-53 | -1.69E-46 |
| MS.gene055719 | MS.gene09062 | -0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene09062 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene056266 | MS.gene09062 | 0.849994 | 2.26E-60 | -1.69E-46 |
| MS.gene059837 | MS.gene09062 | 0.817869 | 2.64E-52 | -1.69E-46 |
| MS.gene06027 | MS.gene09062 | 0.809092 | 2.25E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09062.t1 | MTR_8g086260 | 98.172 | 383 | 6 | 1 | 1 | 382 | 69 | 451 | 0.0 | 779 |
| MS.gene09062.t1 | MTR_8g086260 | 98.000 | 350 | 6 | 1 | 1 | 349 | 69 | 418 | 0.0 | 712 |
| MS.gene09062.t1 | MTR_8g086260 | 96.562 | 320 | 10 | 1 | 1 | 319 | 69 | 388 | 0.0 | 638 |
| MS.gene09062.t1 | MTR_2g015960 | 78.272 | 382 | 78 | 3 | 1 | 381 | 62 | 439 | 0.0 | 598 |
| MS.gene09062.t1 | MTR_8g086260 | 97.683 | 259 | 6 | 0 | 1 | 259 | 69 | 327 | 0.0 | 521 |
| MS.gene09062.t1 | MTR_8g086260 | 96.311 | 244 | 9 | 0 | 1 | 244 | 69 | 312 | 1.65e-172 | 484 |
| MS.gene09062.t1 | MTR_8g086260 | 96.311 | 244 | 9 | 0 | 1 | 244 | 69 | 312 | 9.22e-172 | 482 |
| MS.gene09062.t1 | MTR_2g015960 | 77.481 | 262 | 57 | 2 | 1 | 261 | 1 | 261 | 7.02e-145 | 412 |
| MS.gene09062.t1 | MTR_2g015960 | 77.481 | 262 | 57 | 2 | 1 | 261 | 62 | 322 | 3.25e-144 | 412 |
| MS.gene09062.t1 | MTR_4g128800 | 44.290 | 359 | 170 | 6 | 20 | 369 | 29 | 366 | 1.08e-94 | 288 |
| MS.gene09062.t1 | MTR_3g110530 | 43.258 | 356 | 187 | 5 | 17 | 370 | 56 | 398 | 1.70e-94 | 288 |
| MS.gene09062.t1 | MTR_1g040460 | 42.939 | 347 | 172 | 4 | 21 | 367 | 30 | 350 | 1.63e-90 | 276 |
| MS.gene09062.t1 | MTR_4g128800 | 44.706 | 340 | 158 | 6 | 20 | 350 | 29 | 347 | 4.77e-88 | 272 |
| MS.gene09062.t1 | MTR_4g128800 | 50.202 | 247 | 113 | 2 | 20 | 259 | 29 | 272 | 7.50e-80 | 246 |
| MS.gene09062.t1 | MTR_7g405800 | 51.765 | 85 | 40 | 1 | 89 | 172 | 143 | 227 | 2.72e-18 | 83.6 |
| MS.gene09062.t1 | MTR_6g005650 | 51.765 | 85 | 40 | 1 | 89 | 172 | 210 | 294 | 1.30e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09062.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 80 | 456 | 0.0 | 545 |
| MS.gene09062.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 79 | 455 | 0.0 | 544 |
| MS.gene09062.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 79 | 455 | 0.0 | 544 |
| MS.gene09062.t1 | AT1G29120 | 72.208 | 385 | 97 | 4 | 1 | 382 | 79 | 456 | 0.0 | 536 |
| MS.gene09062.t1 | AT1G29120 | 72.829 | 357 | 88 | 3 | 1 | 355 | 79 | 428 | 2.09e-178 | 503 |
| MS.gene09062.t1 | AT1G29120 | 72.871 | 317 | 77 | 3 | 1 | 315 | 79 | 388 | 1.26e-152 | 436 |
| MS.gene09062.t1 | AT1G29120 | 72.871 | 317 | 77 | 3 | 1 | 315 | 79 | 388 | 2.53e-152 | 436 |
| MS.gene09062.t1 | AT1G29120 | 70.325 | 246 | 64 | 3 | 1 | 244 | 79 | 317 | 1.76e-114 | 337 |
| MS.gene09062.t1 | AT4G25770 | 47.875 | 353 | 158 | 6 | 16 | 367 | 87 | 414 | 4.43e-102 | 308 |
| MS.gene09062.t1 | AT4G25770 | 48.060 | 335 | 146 | 5 | 16 | 348 | 87 | 395 | 2.39e-95 | 291 |
| MS.gene09062.t1 | AT5G51180 | 43.137 | 357 | 176 | 6 | 11 | 367 | 24 | 353 | 1.06e-90 | 277 |
| MS.gene09062.t1 | AT5G51180 | 43.137 | 357 | 176 | 6 | 11 | 367 | 24 | 353 | 1.06e-90 | 277 |
| MS.gene09062.t1 | AT1G10040 | 42.340 | 359 | 177 | 7 | 17 | 369 | 76 | 410 | 1.29e-89 | 276 |
| MS.gene09062.t1 | AT1G10040 | 42.604 | 338 | 164 | 7 | 17 | 348 | 76 | 389 | 2.03e-83 | 260 |
Find 101 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAGAACTTCCTAATTTA+TGG | 0.106858 | 4.4:-13886215 | MS.gene09062:intron |
| TCCTTTGCTTTCACTGCTTC+TGG | 0.142901 | 4.4:+13882873 | None:intergenic |
| TCAGCTTTCACTCATCATTT+TGG | 0.208591 | 4.4:-13882649 | MS.gene09062:CDS |
| CATCTCCTTGTTCTTGTTCA+TGG | 0.217800 | 4.4:-13887070 | MS.gene09062:CDS |
| TCTGAAAAGAATCTCCTTTC+TGG | 0.236492 | 4.4:-13885511 | MS.gene09062:CDS |
| GCTTATACTAAGACGTTTAC+TGG | 0.260732 | 4.4:-13885719 | MS.gene09062:CDS |
| TTCACATGATACCTATAATA+AGG | 0.278470 | 4.4:-13885439 | MS.gene09062:CDS |
| TCCTTTCTGGCCCACTCTTT+AGG | 0.289850 | 4.4:-13885498 | MS.gene09062:CDS |
| TTTCTAGCATGGGAAATTCT+AGG | 0.305809 | 4.4:-13887105 | MS.gene09062:CDS |
| AAATGTACTAACCATAAATT+AGG | 0.309982 | 4.4:+13886204 | None:intergenic |
| ACCAGGTTGGTCCTTATTAT+AGG | 0.313116 | 4.4:+13885428 | None:intergenic |
| TTTCGAAAAGCTTGTACTTT+GGG | 0.316035 | 4.4:+13885377 | None:intergenic |
| CCTATGGCTCCTTTATTTGT+TGG | 0.329773 | 4.4:-13884705 | MS.gene09062:CDS |
| TGTTCTTGTTCATGGCATCT+TGG | 0.337945 | 4.4:-13887062 | MS.gene09062:CDS |
| ACAAGAAACATCGTCAATAT+TGG | 0.350651 | 4.4:-13882451 | MS.gene09062:CDS |
| CTTTCGAAAAGCTTGTACTT+TGG | 0.355164 | 4.4:+13885376 | None:intergenic |
| TCGAAAGGAGGGATGATTGC+TGG | 0.377207 | 4.4:-13885360 | MS.gene09062:CDS |
| TATAGGTATCATGTGAATAA+AGG | 0.383951 | 4.4:+13885445 | None:intergenic |
| GGGCCATCGGAAGGGACTGC+AGG | 0.390467 | 4.4:+13882906 | None:intergenic |
| GCTATGAGTTCTACCACTAA+TGG | 0.391565 | 4.4:-13887136 | MS.gene09062:CDS |
| AGAAATAGAGTTTCCATTAG+TGG | 0.402967 | 4.4:+13887123 | None:intergenic |
| AAGACGTTTACTGGGATTGA+TGG | 0.406587 | 4.4:-13885710 | MS.gene09062:CDS |
| CCTTTATTTGTTGGTCGGAC+TGG | 0.408385 | 4.4:-13884696 | MS.gene09062:CDS |
| CCTCCTCGCCAATCTTTAGA+TGG | 0.414176 | 4.4:-13882960 | MS.gene09062:CDS |
| ATTGGGACGCCCAACAGAAA+TGG | 0.424257 | 4.4:+13884747 | None:intergenic |
| CCAGTCCGACCAACAAATAA+AGG | 0.424489 | 4.4:+13884696 | None:intergenic |
| AACAGAAGAGGTGGTCTGTT+GGG | 0.428007 | 4.4:+13884645 | None:intergenic |
| AACTTGATATAGATATGGTT+GGG | 0.431541 | 4.4:-13884359 | MS.gene09062:intron |
| TTCCAGCTTCCATTTCTGTT+GGG | 0.433079 | 4.4:-13884756 | MS.gene09062:intron |
| TCTCCACATCTTGGTGTAAG+AGG | 0.433082 | 4.4:-13885306 | MS.gene09062:CDS |
| ACTTTAGCATCTCCACATCT+TGG | 0.442362 | 4.4:-13885315 | MS.gene09062:CDS |
| ATCTTGGTGTAAGAGGAAAA+AGG | 0.442918 | 4.4:-13885299 | MS.gene09062:CDS |
| TTAACAGAGGAGATGATTCA+AGG | 0.446850 | 4.4:-13882704 | MS.gene09062:intron |
| AGGAGGGATGATTGCTGGGT+TGG | 0.447520 | 4.4:-13885355 | MS.gene09062:CDS |
| TTTCCAGCTTCCATTTCTGT+TGG | 0.449529 | 4.4:-13884757 | MS.gene09062:intron |
| ACAAGAACAAGGAGATGGTC+TGG | 0.452536 | 4.4:+13887076 | None:intergenic |
| TTGTTCATGGCATCTTGGCT+AGG | 0.453514 | 4.4:-13887057 | MS.gene09062:intron |
| AGAAAAGCTTGCTGCACCTA+TGG | 0.460424 | 4.4:-13884721 | MS.gene09062:CDS |
| TGGCTCCTTTATTTGTTGGT+CGG | 0.464101 | 4.4:-13884701 | MS.gene09062:CDS |
| CGAAAGGAGGGATGATTGCT+GGG | 0.465668 | 4.4:-13885359 | MS.gene09062:CDS |
| GCTAAAGTAATAAAATTGAT+TGG | 0.472395 | 4.4:+13885330 | None:intergenic |
| ATCCTCGATAAGGAGGGAAA+TGG | 0.473394 | 4.4:-13884328 | MS.gene09062:CDS |
| ACCACCTCTTCTGTTGAGAA+TGG | 0.476842 | 4.4:-13884637 | MS.gene09062:CDS |
| TAACTTGATATAGATATGGT+TGG | 0.477256 | 4.4:-13884360 | MS.gene09062:intron |
| TCCTAAAGAGTGGGCCAGAA+AGG | 0.480524 | 4.4:+13885497 | None:intergenic |
| ATGGCTTCTGATTGTGAAGA+TGG | 0.489648 | 4.4:-13884618 | MS.gene09062:CDS |
| ATTCAAGGATTACAACAGTT+GGG | 0.500650 | 4.4:-13882689 | MS.gene09062:CDS |
| GCTGGTATCCATCTAAAGAT+TGG | 0.501403 | 4.4:+13882952 | None:intergenic |
| TGGAAACTCTATTTCTAGCA+TGG | 0.508951 | 4.4:-13887116 | MS.gene09062:CDS |
| GGCCATCGGAAGGGACTGCA+GGG | 0.513927 | 4.4:+13882907 | None:intergenic |
| ACTGATACAGCACAGCGGAC+TGG | 0.514147 | 4.4:-13886271 | MS.gene09062:intron |
| GGAAACTCTATTTCTAGCAT+GGG | 0.517128 | 4.4:-13887115 | MS.gene09062:CDS |
| GGAAACTGAGGGCCATCGGA+AGG | 0.521343 | 4.4:+13882897 | None:intergenic |
| TTTGCTTTCACTGCTTCTGG+AGG | 0.522349 | 4.4:+13882876 | None:intergenic |
| GATTCAAGGATTACAACAGT+TGG | 0.525073 | 4.4:-13882690 | MS.gene09062:CDS |
| CAACAGAAGAGGTGGTCTGT+TGG | 0.525855 | 4.4:+13884644 | None:intergenic |
| AAGGATTACAACAGTTGGGA+TGG | 0.542099 | 4.4:-13882685 | MS.gene09062:CDS |
| CTTATACTAAGACGTTTACT+GGG | 0.544140 | 4.4:-13885718 | MS.gene09062:CDS |
| GAGGGAAATGGAGCTCAGTA+AGG | 0.546083 | 4.4:-13884316 | MS.gene09062:intron |
| CAAGAACAAGGAGATGGTCT+GGG | 0.548685 | 4.4:+13887077 | None:intergenic |
| TGGAGGAAACTGAGGGCCAT+CGG | 0.548884 | 4.4:+13882893 | None:intergenic |
| GGTGGCGCACATCCTCGATA+AGG | 0.551809 | 4.4:-13884338 | MS.gene09062:CDS |
| TTTCTGGCCCACTCTTTAGG+AGG | 0.557270 | 4.4:-13885495 | MS.gene09062:CDS |
| TGGTCTGTTGGGTTTACCAT+CGG | 0.559958 | 4.4:+13884656 | None:intergenic |
| TGTTGGGTTTACCATCGGTA+AGG | 0.561909 | 4.4:+13884661 | None:intergenic |
| CTCCATTTCCCTCCTTATCG+AGG | 0.562222 | 4.4:+13884326 | None:intergenic |
| AAATTAGGAAGTTCTTTCCA+AGG | 0.565004 | 4.4:+13886219 | None:intergenic |
| TGCCCTGCAGTCCCTTCCGA+TGG | 0.565321 | 4.4:-13882909 | MS.gene09062:CDS |
| CCAACAAATAAAGGAGCCAT+AGG | 0.566742 | 4.4:+13884705 | None:intergenic |
| GATCTTGCACACAGAACGGC+AGG | 0.571400 | 4.4:-13885405 | MS.gene09062:CDS |
| GAAACTGAGGGCCATCGGAA+GGG | 0.573496 | 4.4:+13882898 | None:intergenic |
| ATTCAACATCAACCACGTGC+TGG | 0.573595 | 4.4:+13882934 | None:intergenic |
| AATGAATGGTTTCACAATGC+TGG | 0.576009 | 4.4:-13882513 | MS.gene09062:CDS |
| TTTACTGGGATTGATGGAGC+AGG | 0.577171 | 4.4:-13885704 | MS.gene09062:CDS |
| GGCGCACATCCTCGATAAGG+AGG | 0.577833 | 4.4:-13884335 | MS.gene09062:CDS |
| ACTGCTTCTGGAGGAAACTG+AGG | 0.578708 | 4.4:+13882885 | None:intergenic |
| CAAATAAGCCTCCTAAAGAG+TGG | 0.584169 | 4.4:+13885487 | None:intergenic |
| AGTCAGTTGTTCCTTACCGA+TGG | 0.586972 | 4.4:-13884672 | MS.gene09062:CDS |
| GCCATTCTCAACAGAAGAGG+TGG | 0.592717 | 4.4:+13884636 | None:intergenic |
| TTTCCTCTTACACCAAGATG+TGG | 0.596892 | 4.4:+13885303 | None:intergenic |
| AAATAAGCCTCCTAAAGAGT+GGG | 0.606229 | 4.4:+13885488 | None:intergenic |
| TCCAGAAGCAGTGAAAGCAA+AGG | 0.606566 | 4.4:-13882874 | MS.gene09062:CDS |
| CCATCTAAAGATTGGCGAGG+AGG | 0.609081 | 4.4:+13882960 | None:intergenic |
| TGTGTGCAAGATCACCAGGT+TGG | 0.609908 | 4.4:+13885415 | None:intergenic |
| GTTCTGTGTGCAAGATCACC+AGG | 0.612896 | 4.4:+13885411 | None:intergenic |
| TGGTGATCTTGCACACAGAA+CGG | 0.618484 | 4.4:-13885409 | MS.gene09062:CDS |
| TGTAGGAGTAATTGCTCATG+TGG | 0.621038 | 4.4:-13882490 | MS.gene09062:CDS |
| TGGTTTCACAATGCTGGTGT+AGG | 0.625663 | 4.4:-13882507 | MS.gene09062:CDS |
| ATGTTGTTATGAGCAAAGAA+AGG | 0.626830 | 4.4:+13882626 | None:intergenic |
| CTGCTTCTGGAGGAAACTGA+GGG | 0.630303 | 4.4:+13882886 | None:intergenic |
| GAAGCCATTCTCAACAGAAG+AGG | 0.632448 | 4.4:+13884633 | None:intergenic |
| CATGAACAAGAACAAGGAGA+TGG | 0.634338 | 4.4:+13887071 | None:intergenic |
| TGTTACTGTAGATCTGCACT+TGG | 0.649162 | 4.4:-13884520 | MS.gene09062:intron |
| TTGATATAGATATGGTTGGG+TGG | 0.653394 | 4.4:-13884356 | MS.gene09062:intron |
| GAATATCATGAAATTGTCGA+AGG | 0.657213 | 4.4:-13882813 | MS.gene09062:intron |
| ACCTATAATAAGGACCAACC+TGG | 0.658865 | 4.4:-13885429 | MS.gene09062:CDS |
| GCGCACATCCTCGATAAGGA+GGG | 0.667292 | 4.4:-13884334 | MS.gene09062:CDS |
| AGATGCCATGAACAAGAACA+AGG | 0.674157 | 4.4:+13887065 | None:intergenic |
| TATCCATCTAAAGATTGGCG+AGG | 0.684476 | 4.4:+13882957 | None:intergenic |
| GCCTGATACCCAGAAAACTG+TGG | 0.752710 | 4.4:-13882835 | MS.gene09062:CDS |
| TTTAGATGGATACCAGCACG+TGG | 0.761315 | 4.4:-13882946 | MS.gene09062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATACTAAAAATTTAC+TGG | - | chr4.4:13884758-13884777 | MS.gene09062:intron | 10.0% |
| !! | TAACAAAATTTAAATTATAC+TGG | - | chr4.4:13884659-13884678 | MS.gene09062:CDS | 10.0% |
| !! | TTACAACTAAAATTTATATA+TGG | + | chr4.4:13884342-13884361 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAATTTTGTT+AGG | + | chr4.4:13884660-13884679 | None:intergenic | 10.0% |
| !!! | AGTGATTTTTTTTTTTTTTT+TGG | - | chr4.4:13883433-13883452 | MS.gene09062:intron | 10.0% |
| !!! | GTATAATTTAAATTTTGTTA+GGG | + | chr4.4:13884659-13884678 | None:intergenic | 10.0% |
| !!! | GTTTATTTAACTAATTTTAA+AGG | + | chr4.4:13886314-13886333 | None:intergenic | 10.0% |
| !!! | TCATTTTATAAAAGTAATAT+AGG | - | chr4.4:13882752-13882771 | MS.gene09062:intron | 10.0% |
| !! | AAAAAAAAATGATACTGTTA+GGG | - | chr4.4:13885400-13885419 | MS.gene09062:CDS | 15.0% |
| !! | ATTGAAATTTCTCTAATTAT+TGG | + | chr4.4:13884610-13884629 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATGATACTGTT+AGG | - | chr4.4:13885399-13885418 | MS.gene09062:CDS | 15.0% |
| !! | TGAAATTAAAGACAAAAAAA+TGG | + | chr4.4:13883547-13883566 | None:intergenic | 15.0% |
| !! | TGAATTTCAATATGTAATTA+CGG | + | chr4.4:13886137-13886156 | None:intergenic | 15.0% |
| !! | TTAGTTAAATAAACAAATGA+TGG | - | chr4.4:13886320-13886339 | MS.gene09062:intron | 15.0% |
| !!! | ATTGTTATTTTAAATAGCTT+AGG | + | chr4.4:13883719-13883738 | None:intergenic | 15.0% |
| !! | AAATGTACTAACCATAAATT+AGG | + | chr4.4:13883369-13883388 | None:intergenic | 20.0% |
| !! | ATCATAGAGAAATTATATAG+TGG | + | chr4.4:13885675-13885694 | None:intergenic | 20.0% |
| !! | ATCTTACATATGTTAAATAC+TGG | + | chr4.4:13885331-13885350 | None:intergenic | 20.0% |
| !! | ATTATTGAATTATGAGATAG+TGG | + | chr4.4:13883182-13883201 | None:intergenic | 20.0% |
| !! | CGAAACTATTAATATAGAAA+TGG | - | chr4.4:13886514-13886533 | MS.gene09062:intron | 20.0% |
| !! | GCTAAAGTAATAAAATTGAT+TGG | + | chr4.4:13884243-13884262 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACCAAAATTG+AGG | + | chr4.4:13885192-13885211 | None:intergenic | 20.0% |
| !! | TAAAGGATTAATTGAAAAAG+AGG | + | chr4.4:13885016-13885035 | None:intergenic | 20.0% |
| !! | TAACAAACAGAAAAAGAAAT+AGG | + | chr4.4:13883214-13883233 | None:intergenic | 20.0% |
| !! | TAATTAGAGAAATTTCAATC+AGG | - | chr4.4:13884611-13884630 | MS.gene09062:CDS | 20.0% |
| !! | TTTATGATTGACAAATAAAC+TGG | + | chr4.4:13882726-13882745 | None:intergenic | 20.0% |
| !!! | AACTAATTTTAAAGGTTTTC+TGG | + | chr4.4:13886306-13886325 | None:intergenic | 20.0% |
| !!! | AATGTTTTGGAATTTTTCTT+TGG | - | chr4.4:13883748-13883767 | MS.gene09062:intron | 20.0% |
| !!! | TCTTTAACTTGATATAGATA+TGG | - | chr4.4:13885206-13885225 | MS.gene09062:intron | 20.0% |
| !!! | TTATTTCCTTTTATCAAAAC+AGG | - | chr4.4:13884008-13884027 | MS.gene09062:intron | 20.0% |
| !!! | TTTTTTTTTTTGGTAAAGCA+TGG | - | chr4.4:13883443-13883462 | MS.gene09062:intron | 20.0% |
| ! | AAAAGAAAAATGTAGTTGCA+AGG | + | chr4.4:13885902-13885921 | None:intergenic | 25.0% |
| ! | AAAAGAATCAGAACTGAAAT+TGG | + | chr4.4:13883956-13883975 | None:intergenic | 25.0% |
| ! | AAAGAATCAGAACTGAAATT+GGG | + | chr4.4:13883955-13883974 | None:intergenic | 25.0% |
| ! | AAATGTAAAGTGAGGAAATA+TGG | + | chr4.4:13885931-13885950 | None:intergenic | 25.0% |
| ! | AACTTGATATAGATATGGTT+GGG | - | chr4.4:13885211-13885230 | MS.gene09062:intron | 25.0% |
| ! | AATGATTGACATCTATTCAA+TGG | + | chr4.4:13885553-13885572 | None:intergenic | 25.0% |
| ! | AGAATGCTTATATGTTACTA+GGG | - | chr4.4:13886560-13886579 | MS.gene09062:intron | 25.0% |
| ! | AGATTTGTGTGTTAAATGTT+TGG | - | chr4.4:13883926-13883945 | MS.gene09062:intron | 25.0% |
| ! | AGTTTAACTGAAAAGAGTAA+TGG | - | chr4.4:13882666-13882685 | MS.gene09062:CDS | 25.0% |
| ! | ATATATGGCAAAAAAACCAT+AGG | + | chr4.4:13884327-13884346 | None:intergenic | 25.0% |
| ! | ATTGACAAATAAACTGGAAA+GGG | + | chr4.4:13882720-13882739 | None:intergenic | 25.0% |
| ! | ATTTCAATATGTAATTACGG+AGG | + | chr4.4:13886134-13886153 | None:intergenic | 25.0% |
| ! | GAAATAAATGTATGTACGTA+TGG | + | chr4.4:13882835-13882854 | None:intergenic | 25.0% |
| ! | GATCCTCGTAATTTATAATT+AGG | - | chr4.4:13885793-13885812 | MS.gene09062:intron | 25.0% |
| ! | TAACTTGATATAGATATGGT+TGG | - | chr4.4:13885210-13885229 | MS.gene09062:intron | 25.0% |
| ! | TATAGGTATCATGTGAATAA+AGG | + | chr4.4:13884128-13884147 | None:intergenic | 25.0% |
| ! | TATCAAGAAGGGTTAATAAT+TGG | - | chr4.4:13886065-13886084 | MS.gene09062:intron | 25.0% |
| ! | TGAACGTAAAATTAATTGTC+TGG | - | chr4.4:13883793-13883812 | MS.gene09062:intron | 25.0% |
| ! | TGACCTAATTATAAATTACG+AGG | + | chr4.4:13885799-13885818 | None:intergenic | 25.0% |
| ! | TGATAATATTCAAACTGTCT+TGG | - | chr4.4:13884398-13884417 | MS.gene09062:intron | 25.0% |
| ! | TGATACTGTTTATGAATAGT+TGG | - | chr4.4:13882692-13882711 | MS.gene09062:CDS | 25.0% |
| ! | TGGATCAAATCAATTAATAC+TGG | - | chr4.4:13886340-13886359 | MS.gene09062:intron | 25.0% |
| ! | TGTACATCTGTAACATTTAA+TGG | - | chr4.4:13883503-13883522 | MS.gene09062:intron | 25.0% |
| ! | TTCACATGATACCTATAATA+AGG | - | chr4.4:13884131-13884150 | MS.gene09062:intron | 25.0% |
| ! | TTTCAATATGTAATTACGGA+GGG | + | chr4.4:13886133-13886152 | None:intergenic | 25.0% |
| !! | AATTTCAGGTGAAAAATGAA+TGG | - | chr4.4:13887043-13887062 | MS.gene09062:intron | 25.0% |
| !! | CAATAGTTGTCTTAATGTTT+TGG | - | chr4.4:13883735-13883754 | MS.gene09062:intron | 25.0% |
| !! | GTATGCATAAAAACTTTTAC+TGG | - | chr4.4:13882619-13882638 | MS.gene09062:intron | 25.0% |
| !! | TAATTTTACGTTCATTGAAG+AGG | + | chr4.4:13883787-13883806 | None:intergenic | 25.0% |
| !!! | ATTTATTTCTGTTGGTCATT+TGG | - | chr4.4:13882846-13882865 | MS.gene09062:CDS | 25.0% |
| !!! | GTACATACATTTATTTCTGT+TGG | - | chr4.4:13882838-13882857 | MS.gene09062:CDS | 25.0% |
| !!! | TTGTAAATGAGTGTTGTTTA+TGG | - | chr4.4:13884356-13884375 | MS.gene09062:intron | 25.0% |
| !!! | TTTTTCTGGTAGTTATGATT+TGG | - | chr4.4:13883581-13883600 | MS.gene09062:intron | 25.0% |
| AAATTAGGAAGTTCTTTCCA+AGG | + | chr4.4:13883354-13883373 | None:intergenic | 30.0% | |
| AAATTGTTGTGCTGAATTGT+GGG | - | chr4.4:13882574-13882593 | MS.gene09062:intron | 30.0% | |
| AACAAAGAAAACATACTGAG+AGG | + | chr4.4:13885124-13885143 | None:intergenic | 30.0% | |
| AAGAGAATGAAAGTTATCCA+TGG | + | chr4.4:13886003-13886022 | None:intergenic | 30.0% | |
| AAGTGTGAAAAGTCAAACTT+TGG | - | chr4.4:13882794-13882813 | MS.gene09062:intron | 30.0% | |
| AATATGAAGAGTTTCAACGA+AGG | + | chr4.4:13884734-13884753 | None:intergenic | 30.0% | |
| AATATGATGATTTCTCCCTT+TGG | - | chr4.4:13885279-13885298 | MS.gene09062:intron | 30.0% | |
| AATTGCAATACTAGTGTTCT+CGG | - | chr4.4:13886274-13886293 | MS.gene09062:intron | 30.0% | |
| ACAAGAAACATCGTCAATAT+TGG | - | chr4.4:13887119-13887138 | MS.gene09062:CDS | 30.0% | |
| ACACTAGATCTTGTAAGTAA+AGG | + | chr4.4:13885033-13885052 | None:intergenic | 30.0% | |
| ACATCTGTAACATTTAATGG+AGG | - | chr4.4:13883506-13883525 | MS.gene09062:intron | 30.0% | |
| ACCATAGGCACATATTTATA+TGG | + | chr4.4:13884312-13884331 | None:intergenic | 30.0% | |
| ACCATATAAATATGTGCCTA+TGG | - | chr4.4:13884308-13884327 | MS.gene09062:intron | 30.0% | |
| ACTATGTATCTTCTTAACAG+AGG | - | chr4.4:13886853-13886872 | MS.gene09062:intron | 30.0% | |
| AGAAATAGAGTTTCCATTAG+TGG | + | chr4.4:13882450-13882469 | None:intergenic | 30.0% | |
| AGTGTGAAAAGTCAAACTTT+GGG | - | chr4.4:13882795-13882814 | MS.gene09062:intron | 30.0% | |
| ATATGATGATTTCTCCCTTT+GGG | - | chr4.4:13885280-13885299 | MS.gene09062:intron | 30.0% | |
| ATGTTGTTATGAGCAAAGAA+AGG | + | chr4.4:13886947-13886966 | None:intergenic | 30.0% | |
| ATTCAAGGATTACAACAGTT+GGG | - | chr4.4:13886881-13886900 | MS.gene09062:intron | 30.0% | |
| CTTACATAATACTGCCAATA+TGG | - | chr4.4:13884451-13884470 | MS.gene09062:intron | 30.0% | |
| CTTATACTAAGACGTTTACT+GGG | - | chr4.4:13883852-13883871 | MS.gene09062:intron | 30.0% | |
| GAAATGGAAGATGTTTGAAA+TGG | - | chr4.4:13886530-13886549 | MS.gene09062:intron | 30.0% | |
| GAAGATTCCATACGAAAATT+TGG | - | chr4.4:13886488-13886507 | MS.gene09062:intron | 30.0% | |
| GAATATCATGAAATTGTCGA+AGG | - | chr4.4:13886757-13886776 | MS.gene09062:intron | 30.0% | |
| GAGAATGCTTATATGTTACT+AGG | - | chr4.4:13886559-13886578 | MS.gene09062:intron | 30.0% | |
| GATTGACAAATAAACTGGAA+AGG | + | chr4.4:13882721-13882740 | None:intergenic | 30.0% | |
| GGAAAAGAAGTTAAAGACAA+AGG | + | chr4.4:13883647-13883666 | None:intergenic | 30.0% | |
| GGAAAGAACTTCCTAATTTA+TGG | - | chr4.4:13883355-13883374 | MS.gene09062:intron | 30.0% | |
| TATTAACCCTTCTTGATAGA+AGG | + | chr4.4:13886063-13886082 | None:intergenic | 30.0% | |
| TCTGTTAAGAAGATACATAG+TGG | + | chr4.4:13886854-13886873 | None:intergenic | 30.0% | |
| TGGAAAATTTCTGTAAGCAA+AGG | - | chr4.4:13884972-13884991 | MS.gene09062:intron | 30.0% | |
| TGGAACAAAAATATTGTCAG+TGG | - | chr4.4:13886360-13886379 | MS.gene09062:intron | 30.0% | |
| TTGTTCTGTAGTTTAGTGAT+AGG | - | chr4.4:13882872-13882891 | MS.gene09062:CDS | 30.0% | |
| TTTCGAAAAGCTTGTACTTT+GGG | + | chr4.4:13884196-13884215 | None:intergenic | 30.0% | |
| TTTGGTAAAGCATGGATATA+AGG | - | chr4.4:13883451-13883470 | MS.gene09062:intron | 30.0% | |
| ! | AAAGGTCTATTTGTGTTGTT+TGG | - | chr4.4:13883682-13883701 | MS.gene09062:intron | 30.0% |
| ! | ATGATATTCCACAGTTTTCT+GGG | + | chr4.4:13886746-13886765 | None:intergenic | 30.0% |
| ! | GGTGTATCAATGATAACTTT+TGG | - | chr4.4:13885157-13885176 | MS.gene09062:intron | 30.0% |
| ! | TATGTAACTAGCACTAGTTT+AGG | + | chr4.4:13885512-13885531 | None:intergenic | 30.0% |
| ! | TGGTTCTATAATGTTGTACT+GGG | - | chr4.4:13885721-13885740 | MS.gene09062:CDS | 30.0% |
| !! | AAAGGCATAATTTTGAGCTA+TGG | + | chr4.4:13885871-13885890 | None:intergenic | 30.0% |
| !! | ATCAACATCATTTTCAAGAC+TGG | + | chr4.4:13884697-13884716 | None:intergenic | 30.0% |
| !! | ATTTTGTTAGGGTTTGTTTG+TGG | + | chr4.4:13884648-13884667 | None:intergenic | 30.0% |
| !! | GTCAGTAATTCAACTTTTTC+TGG | - | chr4.4:13883567-13883586 | MS.gene09062:intron | 30.0% |
| !! | TAAATGAGTGTTGTTTATGG+TGG | - | chr4.4:13884359-13884378 | MS.gene09062:intron | 30.0% |
| !! | TTGGTTCTATAATGTTGTAC+TGG | - | chr4.4:13885720-13885739 | MS.gene09062:CDS | 30.0% |
| !!! | GCAATACCTGTTTTGATAAA+AGG | + | chr4.4:13884017-13884036 | None:intergenic | 30.0% |
| AAATAAGCCTCCTAAAGAGT+GGG | + | chr4.4:13884085-13884104 | None:intergenic | 35.0% | |
| AACATAACATAGAGAACCAC+AGG | + | chr4.4:13883396-13883415 | None:intergenic | 35.0% | |
| AATGAATGGTTTCACAATGC+TGG | - | chr4.4:13887057-13887076 | MS.gene09062:intron | 35.0% | |
| ACCAATTGCGGATCTATTAT+AGG | - | chr4.4:13884474-13884493 | MS.gene09062:intron | 35.0% | |
| ACTATGTTAACCCAGTTCAT+TGG | - | chr4.4:13886089-13886108 | MS.gene09062:intron | 35.0% | |
| ACTTTACATTTAGTACCCTG+AGG | - | chr4.4:13885940-13885959 | MS.gene09062:intron | 35.0% | |
| AGAATGAAAGTTATCCATGG+AGG | + | chr4.4:13886000-13886019 | None:intergenic | 35.0% | |
| AGCATGGATATAAGGTAACA+CGG | - | chr4.4:13883459-13883478 | MS.gene09062:intron | 35.0% | |
| AGGAAAAAGAAGTAAGCAAG+TGG | - | chr4.4:13882976-13882995 | MS.gene09062:intron | 35.0% | |
| ATTTCTCTATGATGAAGTGC+TGG | - | chr4.4:13885682-13885701 | MS.gene09062:intron | 35.0% | |
| CAAATTGTTGTGCTGAATTG+TGG | - | chr4.4:13882573-13882592 | MS.gene09062:intron | 35.0% | |
| CACAAGAACTTCTCAATTTC+AGG | - | chr4.4:13887029-13887048 | MS.gene09062:intron | 35.0% | |
| CATCATCTGAGAGATCAATA+AGG | + | chr4.4:13886985-13887004 | None:intergenic | 35.0% | |
| CTAATGAACTTCTTGTCACA+TGG | - | chr4.4:13884539-13884558 | MS.gene09062:intron | 35.0% | |
| CTTTCGAAAAGCTTGTACTT+TGG | + | chr4.4:13884197-13884216 | None:intergenic | 35.0% | |
| GAAAAAGAAGTAAGCAAGTG+GGG | - | chr4.4:13882978-13882997 | MS.gene09062:intron | 35.0% | |
| GATTCAAGGATTACAACAGT+TGG | - | chr4.4:13886880-13886899 | MS.gene09062:intron | 35.0% | |
| GATTCCATACGAAAATTTGG+AGG | - | chr4.4:13886491-13886510 | MS.gene09062:intron | 35.0% | |
| GCTTATACTAAGACGTTTAC+TGG | - | chr4.4:13883851-13883870 | MS.gene09062:intron | 35.0% | |
| GGAAAAAGAAGTAAGCAAGT+GGG | - | chr4.4:13882977-13882996 | MS.gene09062:intron | 35.0% | |
| GTGTGAAAAGTCAAACTTTG+GGG | - | chr4.4:13882796-13882815 | MS.gene09062:intron | 35.0% | |
| TATGGAATCTTCCTTGAACA+CGG | + | chr4.4:13886480-13886499 | None:intergenic | 35.0% | |
| TCCTGAGGTAATGCATTAAA+AGG | - | chr4.4:13883664-13883683 | MS.gene09062:intron | 35.0% | |
| TCTGAAAAGAATCTCCTTTC+TGG | - | chr4.4:13884059-13884078 | MS.gene09062:intron | 35.0% | |
| TGAGTTCGTTAGAACCTTTA+CGG | - | chr4.4:13883085-13883104 | MS.gene09062:intron | 35.0% | |
| TGTAAAGTGAGGAAATATGG+TGG | + | chr4.4:13885928-13885947 | None:intergenic | 35.0% | |
| TGTGGTTCTCTATGTTATGT+TGG | - | chr4.4:13883395-13883414 | MS.gene09062:intron | 35.0% | |
| TTAACAGAGGAGATGATTCA+AGG | - | chr4.4:13886866-13886885 | MS.gene09062:intron | 35.0% | |
| TTAGTGATAGGAGTCTGTAT+AGG | - | chr4.4:13882884-13882903 | MS.gene09062:CDS | 35.0% | |
| TTATCACAGAATAGCGTCAT+CGG | - | chr4.4:13885771-13885790 | MS.gene09062:intron | 35.0% | |
| TTATCATTGATACACCTAGC+AGG | + | chr4.4:13885153-13885172 | None:intergenic | 35.0% | |
| TTGATATAGATATGGTTGGG+TGG | - | chr4.4:13885214-13885233 | MS.gene09062:intron | 35.0% | |
| ! | ACCTTTTAATGCATTACCTC+AGG | + | chr4.4:13883668-13883687 | None:intergenic | 35.0% |
| ! | AGGGTACTAAATGTAAAGTG+AGG | + | chr4.4:13885939-13885958 | None:intergenic | 35.0% |
| ! | ATCTTGGTGTAAGAGGAAAA+AGG | - | chr4.4:13884271-13884290 | MS.gene09062:intron | 35.0% |
| ! | CAAAGTACAAGCTTTTCGAA+AGG | - | chr4.4:13884195-13884214 | MS.gene09062:intron | 35.0% |
| ! | CATGATATTCCACAGTTTTC+TGG | + | chr4.4:13886747-13886766 | None:intergenic | 35.0% |
| ! | GAAACCTTTTCTTCTTACTG+AGG | - | chr4.4:13883121-13883140 | MS.gene09062:intron | 35.0% |
| ! | TCAGCTTTCACTCATCATTT+TGG | - | chr4.4:13886921-13886940 | MS.gene09062:intron | 35.0% |
| ! | TGCTTTCATTTTATGCCAAC+AGG | + | chr4.4:13886192-13886211 | None:intergenic | 35.0% |
| ! | TTTCTAGCATGGGAAATTCT+AGG | - | chr4.4:13882465-13882484 | MS.gene09062:CDS | 35.0% |
| ! | TTTTTACTGATACAGCACAG+CGG | - | chr4.4:13883294-13883313 | MS.gene09062:intron | 35.0% |
| !! | AAGATACATAGTGGCTTTAG+TGG | + | chr4.4:13886845-13886864 | None:intergenic | 35.0% |
| !! | CAGCAAGCTTTTCTAGTATT+GGG | + | chr4.4:13884843-13884862 | None:intergenic | 35.0% |
| !! | GGAAACTCTATTTCTAGCAT+GGG | - | chr4.4:13882455-13882474 | MS.gene09062:CDS | 35.0% |
| !! | GTCTTTAACTTCTTTTCCTG+AGG | - | chr4.4:13883649-13883668 | MS.gene09062:intron | 35.0% |
| !! | GTGCTATTTATGCATCTTGT+TGG | - | chr4.4:13886382-13886401 | MS.gene09062:intron | 35.0% |
| !! | TGGAAACTCTATTTCTAGCA+TGG | - | chr4.4:13882454-13882473 | MS.gene09062:CDS | 35.0% |
| !! | TTCTCTGTGTTGATGATTCA+CGG | - | chr4.4:13884421-13884440 | MS.gene09062:intron | 35.0% |
| !! | TTTGTTAAGTGTTGGGAAAG+AGG | - | chr4.4:13886442-13886461 | MS.gene09062:intron | 35.0% |
| AACTTCAACCGTTGTGCTTA+GGG | - | chr4.4:13884566-13884585 | MS.gene09062:intron | 40.0% | |
| AAGACGTTTACTGGGATTGA+TGG | - | chr4.4:13883860-13883879 | MS.gene09062:intron | 40.0% | |
| AAGATCTTGGATCTGCTTTG+TGG | - | chr4.4:13885588-13885607 | MS.gene09062:intron | 40.0% | |
| AAGGATTACAACAGTTGGGA+TGG | - | chr4.4:13886885-13886904 | MS.gene09062:intron | 40.0% | |
| AAGTCACAAGACAACCCAAA+GGG | + | chr4.4:13885297-13885316 | None:intergenic | 40.0% | |
| AATGCTACCACATGCATTCT+TGG | + | chr4.4:13886220-13886239 | None:intergenic | 40.0% | |
| ACCTATAATAAGGACCAACC+TGG | - | chr4.4:13884141-13884160 | MS.gene09062:intron | 40.0% | |
| ACTTTAGCATCTCCACATCT+TGG | - | chr4.4:13884255-13884274 | MS.gene09062:intron | 40.0% | |
| AGATGCCATGAACAAGAACA+AGG | + | chr4.4:13882508-13882527 | None:intergenic | 40.0% | |
| AGATTAGGCAACCAATGAAC+TGG | + | chr4.4:13886103-13886122 | None:intergenic | 40.0% | |
| AGCTCCTCAGTAAGAAGAAA+AGG | + | chr4.4:13883128-13883147 | None:intergenic | 40.0% | |
| AGGTAGTCCTTCTATCAAGA+AGG | - | chr4.4:13886053-13886072 | MS.gene09062:intron | 40.0% | |
| ATGGCTTCTGATTGTGAAGA+TGG | - | chr4.4:13884952-13884971 | MS.gene09062:intron | 40.0% | |
| CAAATAAGCCTCCTAAAGAG+TGG | + | chr4.4:13884086-13884105 | None:intergenic | 40.0% | |
| CACACACACTCTCTTATTGA+GGG | + | chr4.4:13883043-13883062 | None:intergenic | 40.0% | |
| CAGCTTTGCACATAAGATCT+TGG | - | chr4.4:13885575-13885594 | MS.gene09062:intron | 40.0% | |
| CATCTCCTTGTTCTTGTTCA+TGG | - | chr4.4:13882500-13882519 | MS.gene09062:CDS | 40.0% | |
| CATCTGAGAGATCAATAAGG+AGG | + | chr4.4:13886982-13887001 | None:intergenic | 40.0% | |
| CATGAACAAGAACAAGGAGA+TGG | + | chr4.4:13882502-13882521 | None:intergenic | 40.0% | |
| CCAACAAATAAAGGAGCCAT+AGG | + | chr4.4:13884868-13884887 | None:intergenic | 40.0% | |
| CGGGTTATGTGTTGTAAACT+TGG | - | chr4.4:13886412-13886431 | MS.gene09062:intron | 40.0% | |
| CTATCAACCCTCCAAACTTT+GGG | + | chr4.4:13882955-13882974 | None:intergenic | 40.0% | |
| CTGTCAATTGAAGTCCACAA+GGG | - | chr4.4:13885629-13885648 | MS.gene09062:intron | 40.0% | |
| GATTAGGCAACCAATGAACT+GGG | + | chr4.4:13886102-13886121 | None:intergenic | 40.0% | |
| GCATATGCTTTGCAAATGCA+AGG | + | chr4.4:13884508-13884527 | None:intergenic | 40.0% | |
| GCCTATAATAGATCCGCAAT+TGG | + | chr4.4:13884478-13884497 | None:intergenic | 40.0% | |
| GCTGGTATCCATCTAAAGAT+TGG | + | chr4.4:13886621-13886640 | None:intergenic | 40.0% | |
| GGGAGGTAGGTTATAGTATA+AGG | - | chr4.4:13885649-13885668 | MS.gene09062:intron | 40.0% | |
| GGTAGTCCTTCTATCAAGAA+GGG | - | chr4.4:13886054-13886073 | MS.gene09062:intron | 40.0% | |
| GTTAGTACATTTCTCACCTG+TGG | - | chr4.4:13883377-13883396 | MS.gene09062:intron | 40.0% | |
| TATCCATCTAAAGATTGGCG+AGG | + | chr4.4:13886616-13886635 | None:intergenic | 40.0% | |
| TCACACACACTCTCTTATTG+AGG | + | chr4.4:13883044-13883063 | None:intergenic | 40.0% | |
| TCGTTAGAACCTTTACGGTT+AGG | - | chr4.4:13883090-13883109 | MS.gene09062:intron | 40.0% | |
| TCTATCAACCCTCCAAACTT+TGG | + | chr4.4:13882956-13882975 | None:intergenic | 40.0% | |
| TCTGTCAATTGAAGTCCACA+AGG | - | chr4.4:13885628-13885647 | MS.gene09062:intron | 40.0% | |
| TCTTTGTTCTACAACCTGCT+AGG | - | chr4.4:13885136-13885155 | MS.gene09062:intron | 40.0% | |
| TGCATTTGCAAAGCATATGC+TGG | - | chr4.4:13884508-13884527 | MS.gene09062:CDS | 40.0% | |
| TGTAGGAGTAATTGCTCATG+TGG | - | chr4.4:13887080-13887099 | MS.gene09062:CDS | 40.0% | |
| TGTTACTGTAGATCTGCACT+TGG | - | chr4.4:13885050-13885069 | MS.gene09062:intron | 40.0% | |
| TGTTCTTGTTCATGGCATCT+TGG | - | chr4.4:13882508-13882527 | MS.gene09062:CDS | 40.0% | |
| TGTTGGGAAAGAGGTAATGA+TGG | - | chr4.4:13886451-13886470 | MS.gene09062:intron | 40.0% | |
| TTCCAGCTTCCATTTCTGTT+GGG | - | chr4.4:13884814-13884833 | MS.gene09062:intron | 40.0% | |
| TTTCCAGCTTCCATTTCTGT+TGG | - | chr4.4:13884813-13884832 | MS.gene09062:intron | 40.0% | |
| TTTCCTCTTACACCAAGATG+TGG | + | chr4.4:13884270-13884289 | None:intergenic | 40.0% | |
| ! | AATAAGAGAGTGTGTGTGAG+GGG | - | chr4.4:13883045-13883064 | MS.gene09062:intron | 40.0% |
| ! | AGTACAAGCTTTTCGAAAGG+AGG | - | chr4.4:13884198-13884217 | MS.gene09062:intron | 40.0% |
| ! | CAATAAGAGAGTGTGTGTGA+GGG | - | chr4.4:13883044-13883063 | MS.gene09062:intron | 40.0% |
| ! | CCTATGGCTCCTTTATTTGT+TGG | - | chr4.4:13884865-13884884 | MS.gene09062:intron | 40.0% |
| ! | GTACAAGCTTTTCGAAAGGA+GGG | - | chr4.4:13884199-13884218 | MS.gene09062:intron | 40.0% |
| ! | TCAATAAGAGAGTGTGTGTG+AGG | - | chr4.4:13883043-13883062 | MS.gene09062:intron | 40.0% |
| ! | TGGCTCCTTTATTTGTTGGT+CGG | - | chr4.4:13884869-13884888 | MS.gene09062:intron | 40.0% |
| ! | TTCGCCTCCAAATTTTCGTA+TGG | + | chr4.4:13886498-13886517 | None:intergenic | 40.0% |
| !! | AAAGTCAAACTTTGGGGCAA+TGG | - | chr4.4:13882802-13882821 | MS.gene09062:intron | 40.0% |
| !! | AAGTGCTGGTCTATCTCTAT+GGG | - | chr4.4:13885696-13885715 | MS.gene09062:CDS | 40.0% |
| !! | AAGTTTGGAGGGTTGATAGA+AGG | - | chr4.4:13882956-13882975 | MS.gene09062:CDS | 40.0% |
| !! | ACCAGGTTGGTCCTTATTAT+AGG | + | chr4.4:13884145-13884164 | None:intergenic | 40.0% |
| !! | GCAGCAAGCTTTTCTAGTAT+TGG | + | chr4.4:13884844-13884863 | None:intergenic | 40.0% |
| !! | TAATGCGGTTTGTTGACAGA+GGG | + | chr4.4:13885970-13885989 | None:intergenic | 40.0% |
| !! | TGTGTTGATGATTCACGGTT+TGG | - | chr4.4:13884426-13884445 | MS.gene09062:intron | 40.0% |
| AACAATCATCTGTGTACCCG+AGG | - | chr4.4:13886029-13886048 | MS.gene09062:intron | 45.0% | |
| AACAGAAGAGGTGGTCTGTT+GGG | + | chr4.4:13884928-13884947 | None:intergenic | 45.0% | |
| AAGTAAGCAAGTGGGGACAA+AGG | - | chr4.4:13882985-13883004 | MS.gene09062:intron | 45.0% | |
| AATGATGGCATCCGTGTTCA+AGG | - | chr4.4:13886466-13886485 | MS.gene09062:intron | 45.0% | |
| ACAAGAACAAGGAGATGGTC+TGG | + | chr4.4:13882497-13882516 | None:intergenic | 45.0% | |
| ACCAACACATCACCTTCTAC+TGG | + | chr4.4:13882916-13882935 | None:intergenic | 45.0% | |
| ACCACCTCTTCTGTTGAGAA+TGG | - | chr4.4:13884933-13884952 | MS.gene09062:intron | 45.0% | |
| ACCAGTAGAAGGTGATGTGT+TGG | - | chr4.4:13882912-13882931 | MS.gene09062:CDS | 45.0% | |
| ACTATAACCTACCTCCCTTG+TGG | + | chr4.4:13885646-13885665 | None:intergenic | 45.0% | |
| AGTAAGCAAGTGGGGACAAA+GGG | - | chr4.4:13882986-13883005 | MS.gene09062:intron | 45.0% | |
| AGTAGAAGGTGATGTGTTGG+TGG | - | chr4.4:13882915-13882934 | MS.gene09062:CDS | 45.0% | |
| AGTCAGTTGTTCCTTACCGA+TGG | - | chr4.4:13884898-13884917 | MS.gene09062:intron | 45.0% | |
| ATAGAAGGACTACCTACCTC+GGG | + | chr4.4:13886048-13886067 | None:intergenic | 45.0% | |
| ATCCTCGATAAGGAGGGAAA+TGG | - | chr4.4:13885242-13885261 | MS.gene09062:intron | 45.0% | |
| ATCTTGGATCTGCTTTGTGG+TGG | - | chr4.4:13885591-13885610 | MS.gene09062:intron | 45.0% | |
| ATGTAATTACGGAGGGACAC+TGG | + | chr4.4:13886126-13886145 | None:intergenic | 45.0% | |
| ATTATTGGAGCTGCTAGCGA+AGG | + | chr4.4:13884595-13884614 | None:intergenic | 45.0% | |
| ATTCAACATCAACCACGTGC+TGG | + | chr4.4:13886639-13886658 | None:intergenic | 45.0% | |
| CAACTTCAACCGTTGTGCTT+AGG | - | chr4.4:13884565-13884584 | MS.gene09062:intron | 45.0% | |
| CAAGAACAAGGAGATGGTCT+GGG | + | chr4.4:13882496-13882515 | None:intergenic | 45.0% | |
| CAAGTCACAAGACAACCCAA+AGG | + | chr4.4:13885298-13885317 | None:intergenic | 45.0% | |
| CATGTGTCCAAGAATGCATG+TGG | - | chr4.4:13886210-13886229 | MS.gene09062:intron | 45.0% | |
| CCAGTCCGACCAACAAATAA+AGG | + | chr4.4:13884877-13884896 | None:intergenic | 45.0% | |
| CTGCCAATATGGACCAATTG+CGG | - | chr4.4:13884462-13884481 | MS.gene09062:intron | 45.0% | |
| CTTCAATTGACAGACACCAG+TGG | + | chr4.4:13885622-13885641 | None:intergenic | 45.0% | |
| GAAGCCATTCTCAACAGAAG+AGG | + | chr4.4:13884940-13884959 | None:intergenic | 45.0% | |
| GATAGAAGGACTACCTACCT+CGG | + | chr4.4:13886049-13886068 | None:intergenic | 45.0% | |
| GATCCGCAATTGGTCCATAT+TGG | + | chr4.4:13884468-13884487 | None:intergenic | 45.0% | |
| GTAAGGAGAAGCCCAAAGTT+TGG | - | chr4.4:13882941-13882960 | MS.gene09062:CDS | 45.0% | |
| TACAACACATAACCCGACAC+TGG | + | chr4.4:13886408-13886427 | None:intergenic | 45.0% | |
| TACTGAGGAGCTTATGCTCT+GGG | - | chr4.4:13883136-13883155 | MS.gene09062:intron | 45.0% | |
| TATAGGCCTGAACCAGTAGA+AGG | - | chr4.4:13882901-13882920 | MS.gene09062:CDS | 45.0% | |
| TCAATTGAAGTCCACAAGGG+AGG | - | chr4.4:13885632-13885651 | MS.gene09062:intron | 45.0% | |
| TCCAGAAGCAGTGAAAGCAA+AGG | - | chr4.4:13886696-13886715 | MS.gene09062:intron | 45.0% | |
| TCCTTTGCTTTCACTGCTTC+TGG | + | chr4.4:13886700-13886719 | None:intergenic | 45.0% | |
| TGGTCTGTTGGGTTTACCAT+CGG | + | chr4.4:13884917-13884936 | None:intergenic | 45.0% | |
| TGGTGATCTTGCACACAGAA+CGG | - | chr4.4:13884161-13884180 | MS.gene09062:intron | 45.0% | |
| TGGTGTAAGAGGAAAAAGGC+AGG | - | chr4.4:13884275-13884294 | MS.gene09062:intron | 45.0% | |
| TGGTTTCACAATGCTGGTGT+AGG | - | chr4.4:13887063-13887082 | MS.gene09062:CDS | 45.0% | |
| TGTTGGGTTTACCATCGGTA+AGG | + | chr4.4:13884912-13884931 | None:intergenic | 45.0% | |
| TTACTGAGGAGCTTATGCTC+TGG | - | chr4.4:13883135-13883154 | MS.gene09062:intron | 45.0% | |
| TTATTGGAGCTGCTAGCGAA+GGG | + | chr4.4:13884594-13884613 | None:intergenic | 45.0% | |
| TTGTTCATGGCATCTTGGCT+AGG | - | chr4.4:13882513-13882532 | MS.gene09062:CDS | 45.0% | |
| TTTACTGGGATTGATGGAGC+AGG | - | chr4.4:13883866-13883885 | MS.gene09062:intron | 45.0% | |
| TTTAGATGGATACCAGCACG+TGG | - | chr4.4:13886624-13886643 | MS.gene09062:intron | 45.0% | |
| TTTGCTTTCACTGCTTCTGG+AGG | + | chr4.4:13886697-13886716 | None:intergenic | 45.0% | |
| ! | CATGGAGGTGTATGCTAATG+CGG | + | chr4.4:13885985-13886004 | None:intergenic | 45.0% |
| ! | CCTTTATTTGTTGGTCGGAC+TGG | - | chr4.4:13884874-13884893 | MS.gene09062:intron | 45.0% |
| ! | GAGCAAGAGTTTGATTTCGC+AGG | + | chr4.4:13883607-13883626 | None:intergenic | 45.0% |
| ! | GGCACTCTCTTCCTCAATTT+TGG | - | chr4.4:13885178-13885197 | MS.gene09062:intron | 45.0% |
| ! | GTAGAAGGTGATGTGTTGGT+GGG | - | chr4.4:13882916-13882935 | MS.gene09062:CDS | 45.0% |
| ! | TCCACAGTTTTCTGGGTATC+AGG | + | chr4.4:13886739-13886758 | None:intergenic | 45.0% |
| ! | TCTCCACATCTTGGTGTAAG+AGG | - | chr4.4:13884264-13884283 | MS.gene09062:intron | 45.0% |
| !! | ACATCACCTTCTACTGGTTC+AGG | + | chr4.4:13882910-13882929 | None:intergenic | 45.0% |
| !! | AGAAAAGCTTGCTGCACCTA+TGG | - | chr4.4:13884849-13884868 | MS.gene09062:intron | 45.0% |
| !! | CTAATGCGGTTTGTTGACAG+AGG | + | chr4.4:13885971-13885990 | None:intergenic | 45.0% |
| !! | GAAGTGCTGGTCTATCTCTA+TGG | - | chr4.4:13885695-13885714 | MS.gene09062:CDS | 45.0% |
| AGGAGAAGCCCAAAGTTTGG+AGG | - | chr4.4:13882944-13882963 | MS.gene09062:CDS | 50.0% | |
| AGTTGCAAGGTCGAGTGCAA+AGG | + | chr4.4:13885889-13885908 | None:intergenic | 50.0% | |
| ATCATCTGTGTACCCGAGGT+AGG | - | chr4.4:13886033-13886052 | MS.gene09062:intron | 50.0% | |
| ATTGGGACGCCCAACAGAAA+TGG | + | chr4.4:13884826-13884845 | None:intergenic | 50.0% | |
| CAACAGAAGAGGTGGTCTGT+TGG | + | chr4.4:13884929-13884948 | None:intergenic | 50.0% | |
| CCATCTAAAGATTGGCGAGG+AGG | + | chr4.4:13886613-13886632 | None:intergenic | 50.0% | |
| CCTCCTCGCCAATCTTTAGA+TGG | - | chr4.4:13886610-13886629 | MS.gene09062:intron | 50.0% | |
| CGAAAGGAGGGATGATTGCT+GGG | - | chr4.4:13884211-13884230 | MS.gene09062:intron | 50.0% | |
| CGCATTAGCATACACCTCCA+TGG | - | chr4.4:13885983-13886002 | MS.gene09062:intron | 50.0% | |
| CTCCATTTCCCTCCTTATCG+AGG | + | chr4.4:13885247-13885266 | None:intergenic | 50.0% | |
| CTCTCACTGCCTAACCGTAA+AGG | + | chr4.4:13883102-13883121 | None:intergenic | 50.0% | |
| CTGGTCTATCTCTATGGGCT+TGG | - | chr4.4:13885701-13885720 | MS.gene09062:CDS | 50.0% | |
| CTTTGTGGTGGTAAGTCCAC+TGG | - | chr4.4:13885603-13885622 | MS.gene09062:intron | 50.0% | |
| GAAGGGAACCCTAAGCACAA+CGG | + | chr4.4:13884577-13884596 | None:intergenic | 50.0% | |
| GAGGGAAATGGAGCTCAGTA+AGG | - | chr4.4:13885254-13885273 | MS.gene09062:intron | 50.0% | |
| GCCATTCTCAACAGAAGAGG+TGG | + | chr4.4:13884937-13884956 | None:intergenic | 50.0% | |
| GCCTGATACCCAGAAAACTG+TGG | - | chr4.4:13886735-13886754 | MS.gene09062:intron | 50.0% | |
| GCTATGGCTCAGTGTCTATG+AGG | + | chr4.4:13885855-13885874 | None:intergenic | 50.0% | |
| GGAAAAAGGCAGGTCTGTTC+TGG | - | chr4.4:13884285-13884304 | MS.gene09062:intron | 50.0% | |
| GGAGAAGCCCAAAGTTTGGA+GGG | - | chr4.4:13882945-13882964 | MS.gene09062:CDS | 50.0% | |
| GTTCTGTGTGCAAGATCACC+AGG | + | chr4.4:13884162-13884181 | None:intergenic | 50.0% | |
| TCCTAAAGAGTGGGCCAGAA+AGG | + | chr4.4:13884076-13884095 | None:intergenic | 50.0% | |
| TCGAAAGGAGGGATGATTGC+TGG | - | chr4.4:13884210-13884229 | MS.gene09062:intron | 50.0% | |
| TGCATCTTGTTGGCCAGTGT+CGG | - | chr4.4:13886392-13886411 | MS.gene09062:intron | 50.0% | |
| TGTGTGCAAGATCACCAGGT+TGG | + | chr4.4:13884158-13884177 | None:intergenic | 50.0% | |
| TTGAAGTCCACAAGGGAGGT+AGG | - | chr4.4:13885636-13885655 | MS.gene09062:intron | 50.0% | |
| TTGACAGAGGGTCTACCTCA+GGG | + | chr4.4:13885958-13885977 | None:intergenic | 50.0% | |
| ! | ACTGCTTCTGGAGGAAACTG+AGG | + | chr4.4:13886688-13886707 | None:intergenic | 50.0% |
| ! | CTGCTTCTGGAGGAAACTGA+GGG | + | chr4.4:13886687-13886706 | None:intergenic | 50.0% |
| ! | TCCTTTCTGGCCCACTCTTT+AGG | - | chr4.4:13884072-13884091 | MS.gene09062:intron | 50.0% |
| ! | TGATGTGTTGGTGGGCAGTA+AGG | - | chr4.4:13882924-13882943 | MS.gene09062:CDS | 50.0% |
| ! | TTTCTGGCCCACTCTTTAGG+AGG | - | chr4.4:13884075-13884094 | MS.gene09062:intron | 50.0% |
| !! | CGTTCATTGAAGAGGCACTC+AGG | + | chr4.4:13883779-13883798 | None:intergenic | 50.0% |
| !! | GCAGAGTTGAAAAAGCGCCT+TGG | - | chr4.4:13883334-13883353 | MS.gene09062:intron | 50.0% |
| AAGCAAGTGGGGACAAAGGG+AGG | - | chr4.4:13882989-13883008 | MS.gene09062:intron | 55.0% | |
| ACGGAGGGACACTGGAGATT+AGG | + | chr4.4:13886118-13886137 | None:intergenic | 55.0% | |
| ACTGATACAGCACAGCGGAC+TGG | - | chr4.4:13883299-13883318 | MS.gene09062:intron | 55.0% | |
| ACTGCAGAGTCACTGCCTGT+TGG | - | chr4.4:13886174-13886193 | MS.gene09062:intron | 55.0% | |
| AGCAAGTGGGGACAAAGGGA+GGG | - | chr4.4:13882990-13883009 | MS.gene09062:intron | 55.0% | |
| AGGAGGGATGATTGCTGGGT+TGG | - | chr4.4:13884215-13884234 | MS.gene09062:intron | 55.0% | |
| CGCCCAACAGAAATGGAAGC+TGG | + | chr4.4:13884819-13884838 | None:intergenic | 55.0% | |
| GAAACTGAGGGCCATCGGAA+GGG | + | chr4.4:13886675-13886694 | None:intergenic | 55.0% | |
| GATCTTGCACACAGAACGGC+AGG | - | chr4.4:13884165-13884184 | MS.gene09062:intron | 55.0% | |
| GCATCTTGTTGGCCAGTGTC+GGG | - | chr4.4:13886393-13886412 | MS.gene09062:intron | 55.0% | |
| GCGCACATCCTCGATAAGGA+GGG | - | chr4.4:13885236-13885255 | MS.gene09062:intron | 55.0% | |
| GGCAGTGACTCTGCAGTGAT+AGG | + | chr4.4:13886171-13886190 | None:intergenic | 55.0% | |
| GTTGACAGAGGGTCTACCTC+AGG | + | chr4.4:13885959-13885978 | None:intergenic | 55.0% | |
| TGGAGGAAACTGAGGGCCAT+CGG | + | chr4.4:13886680-13886699 | None:intergenic | 55.0% | |
| ! | AGTGTGTGTGAGGGGTGTAG+AGG | - | chr4.4:13883053-13883072 | MS.gene09062:intron | 55.0% |
| ! | GTGTGTGTGAGGGGTGTAGA+GGG | - | chr4.4:13883054-13883073 | MS.gene09062:intron | 55.0% |
| ! | TGAGGAGCTTATGCTCTGGG+CGG | - | chr4.4:13883139-13883158 | MS.gene09062:intron | 55.0% |
| AAGTGGGGACAAAGGGAGGG+TGG | - | chr4.4:13882993-13883012 | MS.gene09062:intron | 60.0% | |
| ACAAAGGGAGGGTGGTGAGC+TGG | - | chr4.4:13883001-13883020 | MS.gene09062:intron | 60.0% | |
| GGAAACTGAGGGCCATCGGA+AGG | + | chr4.4:13886676-13886695 | None:intergenic | 60.0% | |
| GGCGCACATCCTCGATAAGG+AGG | - | chr4.4:13885235-13885254 | MS.gene09062:intron | 60.0% | |
| GGTGGCGCACATCCTCGATA+AGG | - | chr4.4:13885232-13885251 | MS.gene09062:intron | 60.0% | |
| GGCCATCGGAAGGGACTGCA+GGG | + | chr4.4:13886666-13886685 | None:intergenic | 65.0% | |
| TGCCCTGCAGTCCCTTCCGA+TGG | - | chr4.4:13886661-13886680 | MS.gene09062:intron | 65.0% | |
| GGGCCATCGGAAGGGACTGC+AGG | + | chr4.4:13886667-13886686 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13882437 | 13887155 | 13882437 | ID=MS.gene09062 |
| chr4.4 | mRNA | 13882437 | 13887155 | 13882437 | ID=MS.gene09062.t1;Parent=MS.gene09062 |
| chr4.4 | exon | 13887058 | 13887155 | 13887058 | ID=MS.gene09062.t1.exon1;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13887058 | 13887155 | 13887058 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13886216 | 13886283 | 13886216 | ID=MS.gene09062.t1.exon2;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13886216 | 13886283 | 13886216 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13885685 | 13885755 | 13885685 | ID=MS.gene09062.t1.exon3;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13885685 | 13885755 | 13885685 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13885296 | 13885562 | 13885296 | ID=MS.gene09062.t1.exon4;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13885296 | 13885562 | 13885296 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13884609 | 13884772 | 13884609 | ID=MS.gene09062.t1.exon5;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13884609 | 13884772 | 13884609 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13884476 | 13884531 | 13884476 | ID=MS.gene09062.t1.exon6;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13884476 | 13884531 | 13884476 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13884317 | 13884369 | 13884317 | ID=MS.gene09062.t1.exon7;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13884317 | 13884369 | 13884317 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13882814 | 13882982 | 13882814 | ID=MS.gene09062.t1.exon8;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13882814 | 13882982 | 13882814 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13882622 | 13882719 | 13882622 | ID=MS.gene09062.t1.exon9;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13882622 | 13882719 | 13882622 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| chr4.4 | exon | 13882437 | 13882541 | 13882437 | ID=MS.gene09062.t1.exon10;Parent=MS.gene09062.t1 |
| chr4.4 | CDS | 13882437 | 13882541 | 13882437 | ID=cds.MS.gene09062.t1;Parent=MS.gene09062.t1 |
| Gene Sequence |
| Protein sequence |
