Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09070.t1 | XP_003629743.2 | 95.5 | 729 | 33 | 0 | 1 | 729 | 1 | 729 | 0.00E+00 | 1365.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09070.t1 | Q84P17 | 68.0 | 731 | 223 | 7 | 4 | 729 | 3 | 727 | 9.4e-287 | 987.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09070.t1 | G7LIP4 | 95.5 | 729 | 33 | 0 | 1 | 729 | 1 | 729 | 0.0e+00 | 1365.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045801 | MS.gene09070 | PPI |
| MS.gene09070 | MS.gene83231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09070.t1 | MTR_8g086050 | 95.885 | 729 | 30 | 0 | 1 | 729 | 1 | 729 | 0.0 | 1399 |
| MS.gene09070.t1 | MTR_8g085680 | 86.420 | 729 | 98 | 1 | 1 | 729 | 1 | 728 | 0.0 | 1296 |
| MS.gene09070.t1 | MTR_8g085680 | 86.331 | 695 | 94 | 1 | 1 | 695 | 1 | 694 | 0.0 | 1235 |
| MS.gene09070.t1 | MTR_8g086050 | 95.666 | 623 | 27 | 0 | 1 | 623 | 1 | 623 | 0.0 | 1190 |
| MS.gene09070.t1 | MTR_8g086050 | 95.431 | 591 | 27 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1124 |
| MS.gene09070.t1 | MTR_8g085680 | 87.591 | 548 | 67 | 1 | 1 | 548 | 1 | 547 | 0.0 | 975 |
| MS.gene09070.t1 | MTR_2g056120 | 49.863 | 732 | 345 | 10 | 1 | 722 | 1 | 720 | 0.0 | 716 |
| MS.gene09070.t1 | MTR_7g084850 | 26.531 | 588 | 373 | 22 | 169 | 723 | 163 | 724 | 2.54e-32 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09070.t1 | AT1G55320 | 68.810 | 731 | 217 | 7 | 4 | 729 | 3 | 727 | 0.0 | 1029 |
| MS.gene09070.t1 | AT1G55320 | 74.364 | 511 | 128 | 3 | 222 | 729 | 1 | 511 | 0.0 | 788 |
| MS.gene09070.t1 | AT5G23050 | 49.379 | 725 | 352 | 8 | 1 | 721 | 1 | 714 | 0.0 | 679 |
| MS.gene09070.t1 | AT5G23050 | 47.899 | 595 | 297 | 7 | 1 | 593 | 1 | 584 | 0.0 | 533 |
| MS.gene09070.t1 | AT5G36880 | 25.938 | 640 | 400 | 26 | 125 | 723 | 113 | 719 | 7.40e-30 | 126 |
| MS.gene09070.t1 | AT5G36880 | 25.938 | 640 | 400 | 26 | 125 | 723 | 63 | 669 | 9.84e-30 | 126 |
| MS.gene09070.t1 | AT5G36880 | 25.938 | 640 | 400 | 26 | 125 | 723 | 63 | 669 | 9.84e-30 | 126 |
| MS.gene09070.t1 | AT5G36880 | 25.938 | 640 | 400 | 26 | 125 | 723 | 63 | 669 | 9.84e-30 | 126 |
| MS.gene09070.t1 | AT5G36880 | 25.938 | 640 | 400 | 26 | 125 | 723 | 63 | 669 | 9.84e-30 | 126 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCAATCCTTTGTTTA+AGG | 0.105370 | 4.4:-13998150 | MS.gene09070:intron |
| TGCATCACCCTTGGAGAAAT+TGG | 0.134060 | 4.4:+14003816 | None:intergenic |
| CATGATGAGGTTTACTTTAA+AGG | 0.142037 | 4.4:-13999117 | MS.gene09070:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.4:-14000117 | MS.gene09070:CDS |
| AGCTCATGGTTCAGAGCTTT+TGG | 0.210475 | 4.4:-14004690 | MS.gene09070:CDS |
| TCTCCTCAAGGCCATGGTTT+TGG | 0.228125 | 4.4:-14001051 | MS.gene09070:CDS |
| CCCCTGCAGCCTCAAGCTTT+TGG | 0.237441 | 4.4:-13999819 | MS.gene09070:CDS |
| CTATTGCTGGCCGACAAATT+TGG | 0.238876 | 4.4:-14001145 | MS.gene09070:CDS |
| ATACTGTCGTCTGGTTTGTT+AGG | 0.246775 | 4.4:+14004018 | None:intergenic |
| ACAAATATAACAAGCTGTTC+TGG | 0.253499 | 4.4:+13998242 | None:intergenic |
| ATGATGTAGCTGTACAATTA+AGG | 0.254361 | 4.4:-14001686 | MS.gene09070:CDS |
| TTATATCACTGCTTTCTAAA+TGG | 0.268015 | 4.4:-14001099 | MS.gene09070:CDS |
| CAGGGCTGATGAATGCATTT+TGG | 0.275186 | 4.4:-13998303 | MS.gene09070:CDS |
| AAAGGAATGCCCTTGTATAA+AGG | 0.286398 | 4.4:-13999099 | MS.gene09070:CDS |
| TCGGTGTTGCAACTGAAAAT+AGG | 0.286948 | 4.4:-13998268 | MS.gene09070:CDS |
| CAGAACTTTCTTCAATTCAT+TGG | 0.294178 | 4.4:+14005018 | None:intergenic |
| GCTTGGAACGGTTCCCAAAA+TGG | 0.305618 | 4.4:+14000103 | None:intergenic |
| AGTCGAGTGGCAATTTCTTT+TGG | 0.316184 | 4.4:+14003694 | None:intergenic |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.4:+13998605 | None:intergenic |
| CATGAATCTTGGTGGAATAA+AGG | 0.322680 | 4.4:-13998604 | MS.gene09070:intron |
| CATCAGCAGCACTTCGTATT+GGG | 0.324593 | 4.4:+14001202 | None:intergenic |
| CGGTGTTGCAACTGAAAATA+GGG | 0.329692 | 4.4:-13998267 | MS.gene09070:CDS |
| CCTCCACATAATTCAATGAT+TGG | 0.330215 | 4.4:+13999876 | None:intergenic |
| CAATGCCGTTATTATATATC+TGG | 0.332167 | 4.4:-14003767 | MS.gene09070:CDS |
| TGAGTCCAAGGAATAGCTTT+TGG | 0.336308 | 4.4:+14001231 | None:intergenic |
| AAAAGAGGAAAACTAGTAAT+AGG | 0.341960 | 4.4:+14004647 | None:intergenic |
| GGTTTATTCCCCATCTCTCT+TGG | 0.342158 | 4.4:-13999168 | MS.gene09070:CDS |
| CATGGAGGAACATGGCTTCC+TGG | 0.347233 | 4.4:-14004087 | MS.gene09070:CDS |
| AAGGAATGCCCTTGTATAAA+GGG | 0.349792 | 4.4:-13999098 | MS.gene09070:CDS |
| ACAAATTTGGGATGGGTGAT+AGG | 0.352478 | 4.4:-14001132 | MS.gene09070:CDS |
| TTCAATTCATTGGCTTCAAC+AGG | 0.353696 | 4.4:+14005028 | None:intergenic |
| CTGCTATTAACGTTCAAGTT+GGG | 0.355403 | 4.4:-14001173 | MS.gene09070:CDS |
| TATTGCTGGCCGACAAATTT+GGG | 0.362824 | 4.4:-14001144 | MS.gene09070:CDS |
| TTCCAAGCTTAGTGAAATCT+TGG | 0.364156 | 4.4:-14000088 | MS.gene09070:CDS |
| GTTCAAATGCAGAAACTCTA+AGG | 0.366002 | 4.4:-13998199 | MS.gene09070:CDS |
| TACTCGATGTATGGAGGGCT+TGG | 0.372642 | 4.4:-14000060 | MS.gene09070:CDS |
| GATGTATCTAAAATGCAATT+TGG | 0.379893 | 4.4:+14004126 | None:intergenic |
| CACCAACATGGGGTGTTTCA+TGG | 0.387943 | 4.4:-14004714 | MS.gene09070:CDS |
| TTCCAAGATTTCACTAAGCT+TGG | 0.392624 | 4.4:+14000086 | None:intergenic |
| GGGACTTCCCGTAATGTAAC+TGG | 0.392704 | 4.4:+13999839 | None:intergenic |
| CTCCAAAAGCTTGAGGCTGC+AGG | 0.403739 | 4.4:+13999817 | None:intergenic |
| CTTGTATACTGCAGGTCTAC+TGG | 0.405979 | 4.4:-14004191 | MS.gene09070:intron |
| CAAATGTTGATGATGATCTA+TGG | 0.419523 | 4.4:-13999923 | MS.gene09070:CDS |
| CAAATATAACAAGCTGTTCT+GGG | 0.423540 | 4.4:+13998243 | None:intergenic |
| ACTAGTAATAGGATCTTTGT+AGG | 0.423779 | 4.4:+14004658 | None:intergenic |
| AATCCAATCATTGAATTATG+TGG | 0.424565 | 4.4:-13999879 | MS.gene09070:CDS |
| ACGACAGTATAGCCATTGTT+TGG | 0.425408 | 4.4:-14004005 | MS.gene09070:CDS |
| AAGTTGGGGATGTCTATTGC+TGG | 0.435452 | 4.4:-14001158 | MS.gene09070:CDS |
| CCATCAGCAGCACTTCGTAT+TGG | 0.435928 | 4.4:+14001201 | None:intergenic |
| GATCCCTCATTACCCTCCTC+AGG | 0.443183 | 4.4:+13997932 | None:intergenic |
| TGTTATATTTGTAGTTCTAA+AGG | 0.443786 | 4.4:-13998231 | MS.gene09070:CDS |
| GCTTGCGTCCAGTTACATTA+CGG | 0.444712 | 4.4:-13999847 | MS.gene09070:CDS |
| GGTTTGTTAGGGTGGGAGCT+AGG | 0.447595 | 4.4:+14004030 | None:intergenic |
| GCCATTGTTTGGAGGGATGA+AGG | 0.449236 | 4.4:-14003994 | MS.gene09070:CDS |
| TACTGTCGTCTGGTTTGTTA+GGG | 0.449359 | 4.4:+14004019 | None:intergenic |
| CTTGCGTCCAGTTACATTAC+GGG | 0.455274 | 4.4:-13999846 | MS.gene09070:CDS |
| TAAGGGAACAAGACTTATCA+TGG | 0.464090 | 4.4:-14001668 | MS.gene09070:CDS |
| ACTAATATACTATTCTCATC+TGG | 0.465442 | 4.4:-14001384 | MS.gene09070:CDS |
| TTGGAAGAGTACTCGATGTA+TGG | 0.465523 | 4.4:-14000069 | MS.gene09070:CDS |
| GTCGTCTGGTTTGTTAGGGT+GGG | 0.466027 | 4.4:+14004023 | None:intergenic |
| AAATTGAGCGTGTATGTGAC+AGG | 0.466683 | 4.4:-13998322 | MS.gene09070:CDS |
| TCATGTTATTTCCAGGTTGG+TGG | 0.468194 | 4.4:-14003854 | MS.gene09070:intron |
| TGATGTAGCTGTACAATTAA+GGG | 0.475188 | 4.4:-14001685 | MS.gene09070:CDS |
| GTGATGGTGATCATTATAGA+TGG | 0.475516 | 4.4:+14004883 | None:intergenic |
| GATATAATCAAGAGAATGGT+TGG | 0.477992 | 4.4:-13998663 | MS.gene09070:CDS |
| TGTCGTCTGGTTTGTTAGGG+TGG | 0.479618 | 4.4:+14004022 | None:intergenic |
| TGCTATTAACGTTCAAGTTG+GGG | 0.481552 | 4.4:-14001172 | MS.gene09070:CDS |
| ATCACCCATCCCAAATTTGT+CGG | 0.481973 | 4.4:+14001135 | None:intergenic |
| CTACTGGTCTCTTGTTCTAA+AGG | 0.482557 | 4.4:-14004175 | MS.gene09070:CDS |
| AGCACAGCATCAATGACAAC+TGG | 0.485665 | 4.4:-13999789 | MS.gene09070:CDS |
| CACCCTTTGCATTGGAAACA+CGG | 0.488827 | 4.4:+14003671 | None:intergenic |
| GAATCAATCAATTGATAGAC+TGG | 0.489959 | 4.4:+14001411 | None:intergenic |
| AATTGCAATTGCATCACCCT+TGG | 0.492471 | 4.4:+14003807 | None:intergenic |
| GCAACTCTTGCTTTGTACCA+TGG | 0.495276 | 4.4:-14001075 | MS.gene09070:CDS |
| GGAAGATGTTCGAGGAAACT+CGG | 0.500060 | 4.4:+13997963 | None:intergenic |
| GTGACCCAAAAGCTATTCCT+TGG | 0.502276 | 4.4:-14001236 | MS.gene09070:CDS |
| GGTGAGGATATGATGGTTTG+AGG | 0.504019 | 4.4:+14004930 | None:intergenic |
| GGAAACGAATAAAGAGGAGG+AGG | 0.504546 | 4.4:+14004848 | None:intergenic |
| TACGAAGTGCTGCTGATGGA+TGG | 0.504944 | 4.4:-14001197 | MS.gene09070:CDS |
| GTTCCTTGTGTTGGTGAAGT+GGG | 0.510523 | 4.4:-13999189 | MS.gene09070:CDS |
| GCTGATGACACCATGAATCT+TGG | 0.510564 | 4.4:-13998615 | MS.gene09070:CDS |
| ACTATGATTGTTCAGGATGC+AGG | 0.510990 | 4.4:-14000131 | MS.gene09070:intron |
| AGATACCTTCCCTTTATACA+AGG | 0.512979 | 4.4:+13999089 | None:intergenic |
| CTCCGTGTTTCCAATGCAAA+GGG | 0.513305 | 4.4:-14003673 | MS.gene09070:CDS |
| TGTGAAAACACCCTTTGCAT+TGG | 0.516919 | 4.4:+14003663 | None:intergenic |
| TCAGATGCTCCAAGAGAGAT+GGG | 0.517385 | 4.4:+13999159 | None:intergenic |
| GAAGATGTTCGAGGAAACTC+GGG | 0.518970 | 4.4:+13997964 | None:intergenic |
| CTTCTGGAAATCAGAGCTCC+AGG | 0.520619 | 4.4:-14001632 | MS.gene09070:intron |
| GATGTATGGAGGGCTTGGAT+TGG | 0.521106 | 4.4:-14000055 | MS.gene09070:CDS |
| ATCAGATGCTCCAAGAGAGA+TGG | 0.521624 | 4.4:+13999158 | None:intergenic |
| ATATTTGTAGTTCTAAAGGA+AGG | 0.523282 | 4.4:-13998227 | MS.gene09070:CDS |
| AAATCCTGAGGAGGGTAATG+AGG | 0.524639 | 4.4:-13997936 | MS.gene09070:CDS |
| GGGTGTTTCATGGAAGCTCA+TGG | 0.524875 | 4.4:-14004704 | MS.gene09070:CDS |
| TGGAGATATAATCAAGAGAA+TGG | 0.526748 | 4.4:-13998667 | MS.gene09070:CDS |
| CTTTAAAGTAAACCTCATCA+TGG | 0.526934 | 4.4:+13999118 | None:intergenic |
| GCTGCTATTAACGTTCAAGT+TGG | 0.527511 | 4.4:-14001174 | MS.gene09070:CDS |
| CACTCTCCTCAGCTGACACA+TGG | 0.531737 | 4.4:-14004976 | MS.gene09070:CDS |
| TCCAAAAGCTTGAGGCTGCA+GGG | 0.533247 | 4.4:+13999818 | None:intergenic |
| ATTTCATATCAGGAGGTGGC+AGG | 0.533709 | 4.4:-14002176 | MS.gene09070:CDS |
| AACATTTGATGTTTCTCCAG+TGG | 0.538029 | 4.4:+13999938 | None:intergenic |
| GCAGGAAAATCCCATTGTAC+AGG | 0.541427 | 4.4:-14002158 | MS.gene09070:intron |
| ACAGTATAGCCATTGTTTGG+AGG | 0.544343 | 4.4:-14004002 | MS.gene09070:CDS |
| ACAATGGCTATACTGTCGTC+TGG | 0.544381 | 4.4:+14004009 | None:intergenic |
| CAGGATTTCATATCAGGAGG+TGG | 0.545187 | 4.4:-14002180 | MS.gene09070:CDS |
| CAGTATAGCCATTGTTTGGA+GGG | 0.549309 | 4.4:-14004001 | MS.gene09070:CDS |
| TAGCAGGTTCTTAGAAGACA+TGG | 0.550900 | 4.4:-13998687 | MS.gene09070:intron |
| CTATTCTCATCTGGAACCAC+AGG | 0.550967 | 4.4:-14001375 | MS.gene09070:intron |
| TGAGGACTCTGCGACTGACT+AGG | 0.552661 | 4.4:+14004948 | None:intergenic |
| AATGGCCAGATATATAATAA+CGG | 0.554063 | 4.4:+14003762 | None:intergenic |
| GCTATATCATTGTGCAAGGG+AGG | 0.554278 | 4.4:-13998638 | MS.gene09070:CDS |
| TAGTAGAGAAGCTGATGCAA+GGG | 0.555578 | 4.4:+14004908 | None:intergenic |
| CCAAAAGCTTGAGGCTGCAG+GGG | 0.557982 | 4.4:+13999819 | None:intergenic |
| GAGGAGAAGATGAAGAGTGA+TGG | 0.558467 | 4.4:+14004867 | None:intergenic |
| CCAGAAAATGTTCCTTGTGT+TGG | 0.560714 | 4.4:-13999198 | MS.gene09070:CDS |
| GCAAGCAAGACGCACCAACA+TGG | 0.561263 | 4.4:-14004726 | MS.gene09070:CDS |
| AGAAGCTGATGCAAGGGGTG+AGG | 0.561901 | 4.4:+14004914 | None:intergenic |
| AATCCTGAGGAGGGTAATGA+GGG | 0.564835 | 4.4:-13997935 | MS.gene09070:CDS |
| GCAATATTGAGGACAGAACC+AGG | 0.565046 | 4.4:+14004069 | None:intergenic |
| ACGAAGTGCTGCTGATGGAT+GGG | 0.566192 | 4.4:-14001196 | MS.gene09070:CDS |
| GTATCTAAAATGCAATTTGG+AGG | 0.568095 | 4.4:+14004129 | None:intergenic |
| ACTCCGTGTTTCCAATGCAA+AGG | 0.568870 | 4.4:-14003674 | MS.gene09070:CDS |
| AACAACAGTCAGCAATATTG+AGG | 0.568992 | 4.4:+14004058 | None:intergenic |
| AGAGAAGGAAACGAATAAAG+AGG | 0.569670 | 4.4:+14004842 | None:intergenic |
| ATCAGCAGCACTTCGTATTG+GGG | 0.570807 | 4.4:+14001203 | None:intergenic |
| CAAGCAAGACGCACCAACAT+GGG | 0.572540 | 4.4:-14004725 | MS.gene09070:CDS |
| AAAGTAAACCTCATCATGGT+CGG | 0.573356 | 4.4:+13999122 | None:intergenic |
| CATGGATCTCCTCAAGGCCA+TGG | 0.575075 | 4.4:-14001057 | MS.gene09070:CDS |
| TGTTCCTTGTGTTGGTGAAG+TGG | 0.576111 | 4.4:-13999190 | MS.gene09070:CDS |
| GTTATCGTGCTCCCTGCGAT+AGG | 0.576644 | 4.4:-14001711 | MS.gene09070:CDS |
| GATGACACCATGAATCTTGG+TGG | 0.576878 | 4.4:-13998612 | MS.gene09070:CDS |
| GGTGGCTATATCATTGTGCA+AGG | 0.577405 | 4.4:-13998642 | MS.gene09070:CDS |
| GCTACATCATCACCTATCGC+AGG | 0.579555 | 4.4:+14001699 | None:intergenic |
| ATAGTAGAGAAGCTGATGCA+AGG | 0.587281 | 4.4:+14004907 | None:intergenic |
| GCTGGCCGACAAATTTGGGA+TGG | 0.589078 | 4.4:-14001140 | MS.gene09070:CDS |
| CTTCAAAACATGGAGGAACA+TGG | 0.589626 | 4.4:-14004095 | MS.gene09070:CDS |
| AAGCAGTGATATAACAGAGT+AGG | 0.589883 | 4.4:+14001108 | None:intergenic |
| TGCAATTGACATGCAAATGA+CGG | 0.590007 | 4.4:-14003791 | MS.gene09070:CDS |
| TTCCCAAAACCATGGCCTTG+AGG | 0.591486 | 4.4:+14001048 | None:intergenic |
| CTGAATGCTCCAAAAGCTTG+AGG | 0.592552 | 4.4:+13999810 | None:intergenic |
| GAAGAGTACTCGATGTATGG+AGG | 0.593996 | 4.4:-14000066 | MS.gene09070:CDS |
| TCTTCCGACCCTTCAAAACA+TGG | 0.594320 | 4.4:-14004105 | MS.gene09070:CDS |
| TTCCAACAAAATCCTGAGGA+GGG | 0.594371 | 4.4:-13997944 | MS.gene09070:CDS |
| CCAATACGAAGTGCTGCTGA+TGG | 0.596120 | 4.4:-14001201 | MS.gene09070:CDS |
| TTTCAGGATTTCATATCAGG+AGG | 0.598630 | 4.4:-14002183 | MS.gene09070:intron |
| CTGGCCGACAAATTTGGGAT+GGG | 0.599613 | 4.4:-14001139 | MS.gene09070:CDS |
| AACACATCCAGCTAAAACAA+TGG | 0.600477 | 4.4:+14003744 | None:intergenic |
| AATGCCCTTGTATAAAGGGA+AGG | 0.602985 | 4.4:-13999094 | MS.gene09070:intron |
| AGATTTCACTAAGCTTGGAA+CGG | 0.603067 | 4.4:+14000091 | None:intergenic |
| CTATATCATTGTGCAAGGGA+GGG | 0.603945 | 4.4:-13998637 | MS.gene09070:CDS |
| TTTGTCATTCTTGACGACAA+TGG | 0.604567 | 4.4:-13999765 | MS.gene09070:CDS |
| ATTGGGGCAAGTTGAGTCCA+AGG | 0.604685 | 4.4:+14001219 | None:intergenic |
| TGCAAGGGGTGAGGATATGA+TGG | 0.605952 | 4.4:+14004923 | None:intergenic |
| GGACCTTAAACAAAGGATTG+AGG | 0.611864 | 4.4:+13998147 | None:intergenic |
| GAGAGTGATATGATTAACCT+CGG | 0.612081 | 4.4:+14003960 | None:intergenic |
| TTGTACCATGGATCTCCTCA+AGG | 0.614255 | 4.4:-14001063 | MS.gene09070:CDS |
| ACCTTCATCCCTCCAAACAA+TGG | 0.614707 | 4.4:+14003993 | None:intergenic |
| TTCCATGAAACACCCCATGT+TGG | 0.618606 | 4.4:+14004712 | None:intergenic |
| TGTGTCAGCTGAGGAGAGTG+AGG | 0.619809 | 4.4:+14004979 | None:intergenic |
| CTTCCAACAAAATCCTGAGG+AGG | 0.619824 | 4.4:-13997945 | MS.gene09070:CDS |
| ATGAGAGTGACTTACAGAGA+AGG | 0.620146 | 4.4:+14004827 | None:intergenic |
| TCTTTGCAGTCGAGTCATTG+AGG | 0.621680 | 4.4:-14001748 | MS.gene09070:intron |
| CCAATCATTGAATTATGTGG+AGG | 0.624312 | 4.4:-13999876 | MS.gene09070:CDS |
| ATAGATGCCAATTTCTCCAA+GGG | 0.625023 | 4.4:-14003823 | MS.gene09070:CDS |
| AATAGATGCCAATTTCTCCA+AGG | 0.627081 | 4.4:-14003824 | MS.gene09070:CDS |
| CATGGCCTTGAGGAGATCCA+TGG | 0.627745 | 4.4:+14001058 | None:intergenic |
| AAGGGTCGGACCTTAAACAA+AGG | 0.631189 | 4.4:+13998140 | None:intergenic |
| GAAGGAAACGAATAAAGAGG+AGG | 0.631761 | 4.4:+14004845 | None:intergenic |
| GAACAAATTTCCCAAAACCA+TGG | 0.631785 | 4.4:+14001040 | None:intergenic |
| GGTGTTGCAACTGAAAATAG+GGG | 0.634076 | 4.4:-13998266 | MS.gene09070:CDS |
| AGTAATAGGATCTTTGTAGG+AGG | 0.634962 | 4.4:+14004661 | None:intergenic |
| GCAATTTGGAGGTTGAACAA+AGG | 0.636247 | 4.4:+14004140 | None:intergenic |
| AAGAGTACTCGATGTATGGA+GGG | 0.637862 | 4.4:-14000065 | MS.gene09070:CDS |
| GATACCTTCCCTTTATACAA+GGG | 0.639248 | 4.4:+13999090 | None:intergenic |
| CTACATCATCACCTATCGCA+GGG | 0.643107 | 4.4:+14001700 | None:intergenic |
| GCTGAATGCCGACCATGATG+AGG | 0.659320 | 4.4:-13999130 | MS.gene09070:CDS |
| ATAATCAAGAGAATGGTTGG+TGG | 0.659430 | 4.4:-13998660 | MS.gene09070:CDS |
| GTGGCGCCATGTGTCAGCTG+AGG | 0.663062 | 4.4:+14004970 | None:intergenic |
| ATTGGAAACACGGAGTCGAG+TGG | 0.675223 | 4.4:+14003681 | None:intergenic |
| GCTGAGGAGAGTGAGGACAA+TGG | 0.675338 | 4.4:+14004986 | None:intergenic |
| AGTAGAGAAGCTGATGCAAG+GGG | 0.677883 | 4.4:+14004909 | None:intergenic |
| GTGGCTATATCATTGTGCAA+GGG | 0.681013 | 4.4:-13998641 | MS.gene09070:CDS |
| AAACCCACTTCACCAACACA+AGG | 0.689168 | 4.4:+13999186 | None:intergenic |
| GGACTCTGCGACTGACTAGG+TGG | 0.697715 | 4.4:+14004951 | None:intergenic |
| CATCTTCCAACAAAATCCTG+AGG | 0.697941 | 4.4:-13997948 | MS.gene09070:CDS |
| AAGCAAGACGCACCAACATG+GGG | 0.708520 | 4.4:-14004724 | MS.gene09070:CDS |
| CTTCTCTGTTCAACACCCCG+AGG | 0.726098 | 4.4:-14004618 | MS.gene09070:intron |
| CAGATGCTCCAAGAGAGATG+GGG | 0.737772 | 4.4:+13999160 | None:intergenic |
| AATTGAGCGTGTATGTGACA+GGG | 0.741241 | 4.4:-13998321 | MS.gene09070:CDS |
| TGAAGGTTCTGATAACTCCG+AGG | 0.744320 | 4.4:-14003977 | MS.gene09070:CDS |
| TCCGACCCTTCAAAACATGG+AGG | 0.762079 | 4.4:-14004102 | MS.gene09070:CDS |
| AAGATGTTCGAGGAAACTCG+GGG | 0.765970 | 4.4:+13997965 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13997894 | 14005110 | 13997894 | ID=MS.gene09070 |
| chr4.4 | mRNA | 13997894 | 14005110 | 13997894 | ID=MS.gene09070.t1;Parent=MS.gene09070 |
| chr4.4 | exon | 14004842 | 14005110 | 14004842 | ID=MS.gene09070.t1.exon1;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14004842 | 14005110 | 14004842 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14004619 | 14004751 | 14004619 | ID=MS.gene09070.t1.exon2;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14004619 | 14004751 | 14004619 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14003937 | 14004199 | 14003937 | ID=MS.gene09070.t1.exon3;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14003937 | 14004199 | 14003937 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14003660 | 14003861 | 14003660 | ID=MS.gene09070.t1.exon4;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14003660 | 14003861 | 14003660 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14002159 | 14002199 | 14002159 | ID=MS.gene09070.t1.exon5;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14002159 | 14002199 | 14002159 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14001633 | 14001761 | 14001633 | ID=MS.gene09070.t1.exon6;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14001633 | 14001761 | 14001633 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14001376 | 14001449 | 14001376 | ID=MS.gene09070.t1.exon7;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14001376 | 14001449 | 14001376 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14001038 | 14001258 | 14001038 | ID=MS.gene09070.t1.exon8;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14001038 | 14001258 | 14001038 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 14000044 | 14000138 | 14000044 | ID=MS.gene09070.t1.exon9;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 14000044 | 14000138 | 14000044 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 13999755 | 13999971 | 13999755 | ID=MS.gene09070.t1.exon10;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 13999755 | 13999971 | 13999755 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 13999095 | 13999220 | 13999095 | ID=MS.gene09070.t1.exon11;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 13999095 | 13999220 | 13999095 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 13998605 | 13998703 | 13998605 | ID=MS.gene09070.t1.exon12;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 13998605 | 13998703 | 13998605 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 13998151 | 13998357 | 13998151 | ID=MS.gene09070.t1.exon13;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 13998151 | 13998357 | 13998151 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| chr4.4 | exon | 13997894 | 13998007 | 13997894 | ID=MS.gene09070.t1.exon14;Parent=MS.gene09070.t1 |
| chr4.4 | CDS | 13997894 | 13998007 | 13997894 | ID=cds.MS.gene09070.t1;Parent=MS.gene09070.t1 |
| Gene Sequence |
| Protein sequence |
