Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09226.t1 | KEH20613.1 | 97.1 | 961 | 27 | 1 | 1 | 960 | 1 | 961 | 0.00E+00 | 1830.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09226.t1 | Q9FYG2 | 51.7 | 981 | 404 | 17 | 5 | 939 | 34 | 990 | 7.9e-249 | 861.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09226.t1 | A0A072TUT2 | 97.1 | 961 | 27 | 1 | 1 | 960 | 1 | 961 | 0.0e+00 | 1830.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09226.t1 | TF | CAMTA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene09226 | 0.814244 | 1.70E-51 | -1.69E-46 |
| MS.gene051960 | MS.gene09226 | 0.821317 | 4.31E-53 | -1.69E-46 |
| MS.gene057001 | MS.gene09226 | 0.853787 | 1.90E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09226.t1 | MTR_8g080800 | 97.086 | 961 | 27 | 1 | 1 | 960 | 1 | 961 | 0.0 | 1945 |
| MS.gene09226.t1 | MTR_3g085050 | 59.939 | 986 | 322 | 12 | 1 | 957 | 1 | 942 | 0.0 | 1093 |
| MS.gene09226.t1 | MTR_3g085050 | 60.250 | 961 | 311 | 11 | 1 | 934 | 1 | 917 | 0.0 | 1077 |
| MS.gene09226.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 399 | 986 | 9.45e-133 | 424 |
| MS.gene09226.t1 | MTR_2g008840 | 49.007 | 151 | 65 | 4 | 36 | 179 | 2 | 147 | 2.03e-35 | 146 |
| MS.gene09226.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 439 | 1026 | 3.75e-132 | 424 |
| MS.gene09226.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 4.10e-45 | 177 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 1.13e-127 | 408 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 1.31e-127 | 409 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 1.83e-126 | 409 |
| MS.gene09226.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.22e-45 | 179 |
| MS.gene09226.t1 | MTR_4g121840 | 33.299 | 970 | 521 | 29 | 6 | 935 | 24 | 907 | 2.13e-126 | 405 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 2.49e-126 | 409 |
| MS.gene09226.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.87e-46 | 180 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 2.90e-126 | 409 |
| MS.gene09226.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.95e-46 | 180 |
| MS.gene09226.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 3.12e-126 | 409 |
| MS.gene09226.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.34e-45 | 178 |
| MS.gene09226.t1 | MTR_4g094215 | 39.228 | 622 | 304 | 19 | 388 | 959 | 426 | 1023 | 3.38e-121 | 394 |
| MS.gene09226.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.56e-42 | 169 |
| MS.gene09226.t1 | MTR_4g094215 | 39.165 | 623 | 304 | 19 | 388 | 959 | 426 | 1024 | 4.42e-121 | 394 |
| MS.gene09226.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.53e-42 | 169 |
| MS.gene09226.t1 | MTR_4g121840 | 33.477 | 929 | 492 | 29 | 47 | 935 | 35 | 877 | 6.26e-116 | 377 |
| MS.gene09226.t1 | MTR_8g090205 | 39.440 | 464 | 247 | 9 | 394 | 840 | 498 | 944 | 8.47e-92 | 313 |
| MS.gene09226.t1 | MTR_8g090205 | 50.610 | 164 | 68 | 2 | 8 | 158 | 12 | 175 | 1.28e-45 | 178 |
| MS.gene09226.t1 | MTR_2g008840 | 38.289 | 491 | 233 | 14 | 388 | 839 | 439 | 898 | 1.89e-91 | 311 |
| MS.gene09226.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 2.47e-45 | 177 |
| MS.gene09226.t1 | MTR_2g034650 | 37.809 | 566 | 295 | 16 | 398 | 933 | 355 | 893 | 2.19e-87 | 300 |
| MS.gene09226.t1 | MTR_2g034650 | 51.034 | 145 | 69 | 1 | 6 | 150 | 23 | 165 | 4.23e-40 | 160 |
| MS.gene09226.t1 | MTR_4g094215 | 36.810 | 489 | 257 | 12 | 388 | 846 | 426 | 892 | 4.35e-86 | 296 |
| MS.gene09226.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.26e-42 | 168 |
| MS.gene09226.t1 | MTR_8g090200 | 27.570 | 428 | 220 | 19 | 117 | 489 | 14 | 406 | 7.65e-20 | 93.6 |
| MS.gene09226.t1 | MTR_4g123740 | 50.000 | 66 | 29 | 2 | 70 | 135 | 6 | 67 | 1.02e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09226.t1 | AT1G67310 | 52.069 | 991 | 389 | 21 | 3 | 939 | 32 | 990 | 0.0 | 899 |
| MS.gene09226.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 276 | 872 | 1.11e-124 | 400 |
| MS.gene09226.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 397 | 993 | 2.02e-123 | 400 |
| MS.gene09226.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.46e-45 | 178 |
| MS.gene09226.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 379 | 975 | 2.14e-123 | 399 |
| MS.gene09226.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.45e-45 | 178 |
| MS.gene09226.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 456 | 1052 | 1.92e-122 | 399 |
| MS.gene09226.t1 | AT5G09410 | 44.910 | 167 | 62 | 1 | 1 | 137 | 69 | 235 | 1.40e-40 | 162 |
| MS.gene09226.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 396 | 921 | 1.77e-121 | 394 |
| MS.gene09226.t1 | AT2G22300 | 38.919 | 185 | 106 | 3 | 53 | 235 | 1 | 180 | 5.02e-31 | 132 |
| MS.gene09226.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 1.04e-120 | 393 |
| MS.gene09226.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
| MS.gene09226.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 1.04e-120 | 393 |
| MS.gene09226.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
| MS.gene09226.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.34e-120 | 394 |
| MS.gene09226.t1 | AT5G64220 | 59.690 | 129 | 52 | 0 | 8 | 136 | 14 | 142 | 5.54e-48 | 186 |
| MS.gene09226.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.34e-120 | 394 |
| MS.gene09226.t1 | AT5G64220 | 59.690 | 129 | 52 | 0 | 8 | 136 | 14 | 142 | 5.54e-48 | 186 |
| MS.gene09226.t1 | AT3G16940 | 31.441 | 687 | 399 | 22 | 291 | 935 | 155 | 811 | 1.56e-79 | 276 |
| MS.gene09226.t1 | AT3G16940 | 48.993 | 149 | 75 | 1 | 12 | 160 | 1 | 148 | 7.95e-38 | 153 |
| MS.gene09226.t1 | AT3G16940 | 31.441 | 687 | 399 | 22 | 291 | 935 | 182 | 838 | 2.16e-79 | 276 |
| MS.gene09226.t1 | AT3G16940 | 47.742 | 155 | 80 | 1 | 6 | 160 | 22 | 175 | 8.02e-39 | 156 |
| MS.gene09226.t1 | AT3G16940 | 30.085 | 585 | 345 | 18 | 291 | 838 | 182 | 739 | 1.12e-56 | 209 |
| MS.gene09226.t1 | AT3G16940 | 53.030 | 132 | 62 | 0 | 6 | 137 | 22 | 153 | 3.78e-39 | 156 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGCATAGTAACAATTTA+TGG | 0.140587 | 4.1:-14981124 | None:intergenic |
| TTCACCATCTTCTTCATTAA+TGG | 0.149051 | 4.1:+14983951 | MS.gene09226:CDS |
| AGAAACCTCAGCTGACTTTA+AGG | 0.172864 | 4.1:+14982106 | MS.gene09226:CDS |
| ATTATAGAGGCTCTACTATT+TGG | 0.207358 | 4.1:+14985316 | MS.gene09226:CDS |
| GGAAGCATTACAAAGTATTA+TGG | 0.222235 | 4.1:+14986867 | MS.gene09226:CDS |
| AATAATCCCCTGCTCTTTCT+TGG | 0.231755 | 4.1:-14985458 | None:intergenic |
| AAAACAGAAATTTACTATTA+AGG | 0.252298 | 4.1:+14984288 | MS.gene09226:CDS |
| CTTCATTGGGCTGCACGTTT+TGG | 0.253483 | 4.1:+14985577 | MS.gene09226:CDS |
| GGGATTATTCACATGGTTGC+TGG | 0.262638 | 4.1:+14985472 | MS.gene09226:CDS |
| GCCAGGCATGACCATCTTTC+CGG | 0.272852 | 4.1:-14980479 | None:intergenic |
| CTGTTATTACTTGTTAGATT+TGG | 0.278401 | 4.1:+14985199 | MS.gene09226:CDS |
| CTTTGTAATGCTTCCTAACT+TGG | 0.282011 | 4.1:-14986859 | None:intergenic |
| CCCTTGATGATTCTGTGGTT+TGG | 0.285385 | 4.1:-14982231 | None:intergenic |
| ACTTCCTCCATATTCTTCTA+TGG | 0.286754 | 4.1:+14984165 | MS.gene09226:CDS |
| GTTACTCTGTGCATTACTTC+TGG | 0.291948 | 4.1:+14985067 | MS.gene09226:CDS |
| GGAGAAAAGGAGTCGGTTTA+CGG | 0.298490 | 4.1:+14986927 | MS.gene09226:CDS |
| ATGGGTGGACTGCCCTTCAT+TGG | 0.305451 | 4.1:+14985563 | MS.gene09226:CDS |
| TCAGAGGAATAACCCCATTC+TGG | 0.307135 | 4.1:-14984319 | None:intergenic |
| CATCATGAGATGCTCCAATT+TGG | 0.318825 | 4.1:-14984240 | None:intergenic |
| TTGTTTGACCAAAGCCAAAT+TGG | 0.322075 | 4.1:+14984226 | MS.gene09226:CDS |
| CTTTCCAGAGGCGGAGCTAT+TGG | 0.324977 | 4.1:+14981163 | MS.gene09226:CDS |
| AGTTCCTGTTGAGCTAATTC+AGG | 0.325656 | 4.1:+14985000 | MS.gene09226:CDS |
| TTTGGCAGTGAAAATTCTTC+TGG | 0.330125 | 4.1:+14985334 | MS.gene09226:CDS |
| GTCATCCCTCTGATTCTGCC+TGG | 0.330295 | 4.1:+14984954 | MS.gene09226:CDS |
| ATTCACATGGTTGCTGGGTT+GGG | 0.335295 | 4.1:+14985478 | MS.gene09226:CDS |
| TTCACTTGTTTGTGCAAGTT+CGG | 0.338414 | 4.1:-14987398 | None:intergenic |
| TGTTACTTGTTGGCTGTTGC+GGG | 0.338603 | 4.1:-14979871 | None:intergenic |
| ATTATGGGCAGTTGGAATCT+TGG | 0.340243 | 4.1:+14986883 | MS.gene09226:CDS |
| TGTTATTACTTGTTAGATTT+GGG | 0.340702 | 4.1:+14985200 | MS.gene09226:CDS |
| GTTTCATCCATAGAAGAATA+TGG | 0.341126 | 4.1:-14984172 | None:intergenic |
| AGCTTCATGCTCGTTGTAGA+AGG | 0.349283 | 4.1:-14982198 | None:intergenic |
| ATAGTAGAGCCTCTATAATA+TGG | 0.356170 | 4.1:-14985312 | None:intergenic |
| GAAGAGTATTACGTTTCTTC+CGG | 0.359417 | 4.1:+14980460 | MS.gene09226:CDS |
| GAAGTTCCATCTCACATTCC+TGG | 0.365550 | 4.1:+14985040 | MS.gene09226:CDS |
| TTCATCTACTTCCCGAGATC+TGG | 0.365870 | 4.1:-14985416 | None:intergenic |
| ATTCTTCTGGTACTATCAAT+TGG | 0.373127 | 4.1:+14985347 | MS.gene09226:CDS |
| TGCAGCTAGCAGCGGGCATA+AGG | 0.374436 | 4.1:+14985969 | MS.gene09226:CDS |
| TAACAGCTCATCTGGAGTTC+TGG | 0.376239 | 4.1:-14985182 | None:intergenic |
| TATTCACATGGTTGCTGGGT+TGG | 0.377002 | 4.1:+14985477 | MS.gene09226:CDS |
| CCAATTGGATCTTGTGCACT+TGG | 0.378723 | 4.1:-14985928 | None:intergenic |
| ATGTGAGAGGTTACCAAGTT+AGG | 0.379390 | 4.1:+14986846 | MS.gene09226:CDS |
| GAGAAAAGGAGTCGGTTTAC+GGG | 0.381739 | 4.1:+14986928 | MS.gene09226:CDS |
| GTTGCATCACTTATAGCTTC+TGG | 0.385172 | 4.1:+14985880 | MS.gene09226:CDS |
| AGTCATTCCATTGTTATAAG+AGG | 0.386448 | 4.1:-14982057 | None:intergenic |
| CCATCCTGAATTAGCTCAAC+AGG | 0.389513 | 4.1:-14985004 | None:intergenic |
| GCTTCTCTTTCCAATGGAGC+AGG | 0.391039 | 4.1:-14985157 | None:intergenic |
| CATTTCCATCAGGGAAATCA+TGG | 0.392414 | 4.1:-14983757 | None:intergenic |
| GAAGCATTACAAAGTATTAT+GGG | 0.396758 | 4.1:+14986868 | MS.gene09226:CDS |
| ATAGCTTCTGGTGCATCTGC+TGG | 0.404064 | 4.1:+14985892 | MS.gene09226:CDS |
| ATGCACAGAGTAACCTTTCC+AGG | 0.407884 | 4.1:-14985058 | None:intergenic |
| CATCCATTGCAGCTAGCAGC+GGG | 0.408752 | 4.1:+14985962 | MS.gene09226:CDS |
| ACAAGTAATAACAGCTCATC+TGG | 0.410138 | 4.1:-14985190 | None:intergenic |
| TTGTAGGGAAGGCTCAGTTC+TGG | 0.411053 | 4.1:+14981888 | MS.gene09226:intron |
| GAGATGCTCCAATTTGGCTT+TGG | 0.415155 | 4.1:-14984234 | None:intergenic |
| TGTGCATTACTTCTGGAAAC+CGG | 0.420398 | 4.1:+14985074 | MS.gene09226:CDS |
| TCAAGCTTTGCGCCGATTGG+AGG | 0.420689 | 4.1:+14982133 | MS.gene09226:CDS |
| CTGGTGGCTTCTCTTTCCAA+TGG | 0.422838 | 4.1:-14985163 | None:intergenic |
| TCACACCGCAACTGAGAATA+GGG | 0.423019 | 4.1:-14985519 | None:intergenic |
| AGCAGGGTCGGTGAAATTCT+TGG | 0.425679 | 4.1:-14985140 | None:intergenic |
| TACTCAAGCTTTGCGCCGAT+TGG | 0.428909 | 4.1:+14982130 | MS.gene09226:CDS |
| CGAACCCGGAAAACTATTGC+TGG | 0.430215 | 4.1:+14983983 | MS.gene09226:CDS |
| TCTGCCTGGGCCTGTATGCT+TGG | 0.432274 | 4.1:+14984968 | MS.gene09226:CDS |
| TCATATAGTACTCAGAATCC+AGG | 0.436097 | 4.1:+14981963 | MS.gene09226:CDS |
| TGGGTGGACTGCCCTTCATT+GGG | 0.436536 | 4.1:+14985564 | MS.gene09226:CDS |
| GGATTATTCACATGGTTGCT+GGG | 0.437285 | 4.1:+14985473 | MS.gene09226:CDS |
| TTTCACCGACCCTGCTCCAT+TGG | 0.437455 | 4.1:+14985147 | MS.gene09226:CDS |
| GAGGAATCCACAGCTCTCTC+TGG | 0.438265 | 4.1:+14982269 | MS.gene09226:CDS |
| TAAGGCAGTCTCCCCAGAAT+GGG | 0.443176 | 4.1:+14984306 | MS.gene09226:CDS |
| GAAGCTCTGATTAGGTTCAT+AGG | 0.447215 | 4.1:-14982009 | None:intergenic |
| AGCGGGCATAAGGGACTGGC+AGG | 0.447828 | 4.1:+14985979 | MS.gene09226:CDS |
| TGATATTGCTCACGAGCATC+AGG | 0.448217 | 4.1:-14987076 | None:intergenic |
| CCATCTGTCATCTCTTACAC+TGG | 0.451970 | 4.1:+14986029 | MS.gene09226:CDS |
| CAGAGGAATAACCCCATTCT+GGG | 0.453671 | 4.1:-14984318 | None:intergenic |
| CAAAACGTGCAGCCCAATGA+AGG | 0.453699 | 4.1:-14985576 | None:intergenic |
| ATGTTACTTGTTGGCTGTTG+CGG | 0.454201 | 4.1:-14979872 | None:intergenic |
| CCCGGTGACAATTGTGTGCC+AGG | 0.454642 | 4.1:-14981912 | None:intergenic |
| AAGTAATGATAACAACGAAT+CGG | 0.457105 | 4.1:+14985249 | MS.gene09226:CDS |
| GATCACATTCATTTAGAAAA+CGG | 0.457488 | 4.1:+14986220 | MS.gene09226:CDS |
| ATAAATTTCCGTGATGTCAA+TGG | 0.460639 | 4.1:+14985544 | MS.gene09226:CDS |
| AGAAGGCTGATGATGATTCA+TGG | 0.462726 | 4.1:+14985287 | MS.gene09226:CDS |
| AAAAGAGATGGAAGAGCTGT+AGG | 0.467414 | 4.1:+14980507 | MS.gene09226:CDS |
| AGTAGATGTGGAAATTGAAA+AGG | 0.467562 | 4.1:+14987021 | MS.gene09226:CDS |
| GGACTGGAGAAGCTCTGATT+AGG | 0.467985 | 4.1:-14982017 | None:intergenic |
| TCATCCCTCTGATTCTGCCT+GGG | 0.473426 | 4.1:+14984955 | MS.gene09226:CDS |
| TTACGTTTCTTCCGGAAAGA+TGG | 0.474223 | 4.1:+14980468 | MS.gene09226:CDS |
| TAGCTCCGCCTCTGGAAAGT+AGG | 0.474330 | 4.1:-14981159 | None:intergenic |
| GTGCTAAGATGGCGGAGAAA+AGG | 0.474475 | 4.1:+14986914 | MS.gene09226:CDS |
| TTCACACCGCAACTGAGAAT+AGG | 0.474658 | 4.1:-14985520 | None:intergenic |
| TATATTCTTGTAGGTGATAG+TGG | 0.478429 | 4.1:+14983710 | MS.gene09226:intron |
| CGTGGCTTACTTCCAGATCT+CGG | 0.478848 | 4.1:+14985404 | MS.gene09226:CDS |
| TTCTTTGTCCAAGAAAGAGC+AGG | 0.480183 | 4.1:+14985450 | MS.gene09226:CDS |
| TAAACAACGGACGTTGACCC+TGG | 0.483608 | 4.1:-14981981 | None:intergenic |
| AATCAGAGCTTCTCCAGTCC+TGG | 0.487676 | 4.1:+14982020 | MS.gene09226:CDS |
| GCTTCTTGAAGAGCTACTAA+AGG | 0.488943 | 4.1:+14985369 | MS.gene09226:CDS |
| TTCAGAAGAAATATCGAGGT+TGG | 0.489389 | 4.1:+14986379 | MS.gene09226:CDS |
| AATGCACCTTCAGCCGTTCG+TGG | 0.490374 | 4.1:-14980536 | None:intergenic |
| AGTAATGATAACAACGAATC+GGG | 0.494514 | 4.1:+14985250 | MS.gene09226:CDS |
| GAAATGAAAAGGCTCTATCA+TGG | 0.494556 | 4.1:+14983774 | MS.gene09226:CDS |
| TGACTTCACTGCATGACTCC+CGG | 0.494680 | 4.1:-14985093 | None:intergenic |
| GCAACTGAGAATAGGGTTCA+AGG | 0.496854 | 4.1:-14985512 | None:intergenic |
| ACATCCAATAGCTCCGCCTC+TGG | 0.497187 | 4.1:-14981167 | None:intergenic |
| GAGGTAACTTCTGCAGATCC+AGG | 0.497445 | 4.1:-14982038 | None:intergenic |
| TGGACAAGGTTGTGCTAAGA+TGG | 0.498360 | 4.1:+14986903 | MS.gene09226:CDS |
| GCATCCATTGCAGCTAGCAG+CGG | 0.501501 | 4.1:+14985961 | MS.gene09226:CDS |
| TAAATTTCCGTGATGTCAAT+GGG | 0.503471 | 4.1:+14985545 | MS.gene09226:CDS |
| CTAGACCATGATTTCCCTGA+TGG | 0.505531 | 4.1:+14983752 | MS.gene09226:CDS |
| TAGCAGCGGGCATAAGGGAC+TGG | 0.507308 | 4.1:+14985975 | MS.gene09226:CDS |
| TTTCCCTGATGGAAATGAAA+AGG | 0.507835 | 4.1:+14983763 | MS.gene09226:CDS |
| AATTTCAACGCTGATAATGC+TGG | 0.509397 | 4.1:+14984009 | MS.gene09226:CDS |
| ATCATCCCTTGATGATTCTG+TGG | 0.509626 | 4.1:-14982236 | None:intergenic |
| AACTTAACTGCACCTCCAAT+CGG | 0.509739 | 4.1:-14982145 | None:intergenic |
| TACAAAGTATTATGGGCAGT+TGG | 0.512430 | 4.1:+14986875 | MS.gene09226:CDS |
| TCTTCTTCTACCATGACATC+TGG | 0.515361 | 4.1:+14979287 | None:intergenic |
| TGTATTTCTGACAGCAGCTA+AGG | 0.517159 | 4.1:-14986163 | None:intergenic |
| GTGGCTTACTTCCAGATCTC+GGG | 0.517721 | 4.1:+14985405 | MS.gene09226:CDS |
| ATGCCCGCTGCTAGCTGCAA+TGG | 0.519565 | 4.1:-14985965 | None:intergenic |
| ACCTGGCACACAATTGTCAC+CGG | 0.520234 | 4.1:+14981911 | MS.gene09226:CDS |
| CCAAGTGCACAAGATCCAAT+TGG | 0.522680 | 4.1:+14985928 | MS.gene09226:CDS |
| TCCAAACCACAGAATCATCA+AGG | 0.522957 | 4.1:+14982230 | MS.gene09226:CDS |
| AAAATGTACATCACTTCTGC+AGG | 0.523652 | 4.1:-14979812 | None:intergenic |
| TTCAACATCACCAAGCATAC+AGG | 0.525286 | 4.1:-14984978 | None:intergenic |
| TCCGGAAAGATGGTCATGCC+TGG | 0.525525 | 4.1:+14980478 | MS.gene09226:CDS |
| GGGTTTCAAACCAGAGATGC+AGG | 0.526149 | 4.1:+14986949 | MS.gene09226:CDS |
| AAGAAATATCGAGGTTGGAA+AGG | 0.529924 | 4.1:+14986384 | MS.gene09226:CDS |
| GCAGCTAGCAGCGGGCATAA+GGG | 0.531238 | 4.1:+14985970 | MS.gene09226:CDS |
| ATCACCAAGCATACAGGCCC+AGG | 0.535400 | 4.1:-14984972 | None:intergenic |
| CTTGACATAGCATAAAGCTC+TGG | 0.536851 | 4.1:-14986309 | None:intergenic |
| AGCTCCGCCTCTGGAAAGTA+GGG | 0.537194 | 4.1:-14981158 | None:intergenic |
| TTAAGGCAGTCTCCCCAGAA+TGG | 0.537679 | 4.1:+14984305 | MS.gene09226:CDS |
| ATCAAGAAGCTCAAAGGAGG+TGG | 0.540877 | 4.1:+14979783 | MS.gene09226:CDS |
| GCTACTAAAGGATAAGCTAC+AGG | 0.543205 | 4.1:+14985381 | MS.gene09226:CDS |
| TCCATCTCACATTCCTGGAA+AGG | 0.544442 | 4.1:+14985045 | MS.gene09226:CDS |
| ATTGGAGCATCTCATGATGC+TGG | 0.547038 | 4.1:+14984244 | MS.gene09226:CDS |
| TTCATGGAGCCATATTATAG+AGG | 0.548594 | 4.1:+14985303 | MS.gene09226:CDS |
| GCAATACTTACATTTCCTGC+TGG | 0.549061 | 4.1:-14983812 | None:intergenic |
| AACTGTTAGTAATGTCTCCA+AGG | 0.549109 | 4.1:+14986098 | MS.gene09226:CDS |
| ATGCACCTTCAGCCGTTCGT+GGG | 0.549348 | 4.1:-14980535 | None:intergenic |
| AACTTCTGCAGATCCAGGAC+TGG | 0.551466 | 4.1:-14982033 | None:intergenic |
| GTGCATTACTTCTGGAAACC+GGG | 0.556150 | 4.1:+14985075 | MS.gene09226:CDS |
| GATGGATATAATGGAAGGCA+AGG | 0.559300 | 4.1:+14982317 | MS.gene09226:CDS |
| TCTTTCCAATGGAGCAGGGT+CGG | 0.560531 | 4.1:-14985152 | None:intergenic |
| TCTCTCTGGATCAGATAACC+AGG | 0.561118 | 4.1:+14982283 | MS.gene09226:CDS |
| GGTGCAGTTAAGTTTGAATG+AGG | 0.561643 | 4.1:+14982154 | MS.gene09226:CDS |
| AGAAGCCCACGAACGGCTGA+AGG | 0.562890 | 4.1:+14980530 | MS.gene09226:CDS |
| ATCTATATCAAGAAGCTCAA+AGG | 0.567902 | 4.1:+14979777 | MS.gene09226:CDS |
| ACCTTTCCAGGAATGTGAGA+TGG | 0.568391 | 4.1:-14985046 | None:intergenic |
| GTTACTTGTTGGCTGTTGCG+GGG | 0.569067 | 4.1:-14979870 | None:intergenic |
| TTACTTGTTGGCTGTTGCGG+GGG | 0.569205 | 4.1:-14979869 | None:intergenic |
| TACAACGAGCATGAAGCTAC+CGG | 0.569270 | 4.1:+14982203 | MS.gene09226:CDS |
| GGTTCCATTAATGAAGAAGA+TGG | 0.570466 | 4.1:-14983955 | None:intergenic |
| TTTATGATGGATATAATGGA+AGG | 0.570899 | 4.1:+14982312 | MS.gene09226:CDS |
| GATATAAGTGCAAGTAGTGT+TGG | 0.571594 | 4.1:+14986279 | MS.gene09226:CDS |
| TCGGGAAGTAGATGAAGAGA+CGG | 0.571607 | 4.1:+14985423 | MS.gene09226:CDS |
| GGAAGGCTCAGTTCTGGACC+TGG | 0.571723 | 4.1:+14981894 | MS.gene09226:CDS |
| ATTCTGTGGTTTGGAATCAC+CGG | 0.571949 | 4.1:-14982222 | None:intergenic |
| GGACTATACGCAGAAGAACC+CGG | 0.572116 | 4.1:-14981930 | None:intergenic |
| AGAAAAGGAGTCGGTTTACG+GGG | 0.574601 | 4.1:+14986929 | MS.gene09226:CDS |
| CTTCTCTTTCCAATGGAGCA+GGG | 0.575366 | 4.1:-14985156 | None:intergenic |
| GAAACAAATGCTGTTATGAG+TGG | 0.575428 | 4.1:+14986252 | MS.gene09226:CDS |
| ATCCATCATAAAATAGCCCC+TGG | 0.576549 | 4.1:-14982301 | None:intergenic |
| GAAGTTACCTCTTATAACAA+TGG | 0.577185 | 4.1:+14982050 | MS.gene09226:CDS |
| ACATGTGTTACCAGATGTCA+TGG | 0.577892 | 4.1:-14979297 | None:intergenic |
| ATGTTCACGTGAGTTTCGAA+AGG | 0.582903 | 4.1:-14986337 | None:intergenic |
| GCCTGGCGGAAGAAAAGAGA+TGG | 0.583866 | 4.1:+14980495 | MS.gene09226:CDS |
| TGCTGTCAGAAATACAACTC+AGG | 0.587231 | 4.1:+14986170 | MS.gene09226:CDS |
| TGTCTCAAGAGTGCTGTCCA+TGG | 0.588545 | 4.1:+14987045 | MS.gene09226:CDS |
| CAGCTCATCTGGAGTTCTGG+TGG | 0.594570 | 4.1:-14985179 | None:intergenic |
| ACAGGCCCAGGCAGAATCAG+AGG | 0.594590 | 4.1:-14984960 | None:intergenic |
| ATATTGCTTTCAGTGAGGAT+CGG | 0.596772 | 4.1:+14986124 | MS.gene09226:CDS |
| TTTGTGTAGGCTCATGTGAG+AGG | 0.599137 | 4.1:+14986833 | MS.gene09226:intron |
| AAAACGTGCAGCCCAATGAA+GGG | 0.600218 | 4.1:-14985575 | None:intergenic |
| TTCTGAGTACTATATGAGCT+AGG | 0.601385 | 4.1:-14981957 | None:intergenic |
| TTGAACCCTATTCTCAGTTG+CGG | 0.604424 | 4.1:+14985514 | MS.gene09226:CDS |
| GCTTCATGCTCGTTGTAGAA+GGG | 0.605012 | 4.1:-14982197 | None:intergenic |
| TCTTTGTCCAAGAAAGAGCA+GGG | 0.605633 | 4.1:+14985451 | MS.gene09226:CDS |
| CCTGGCACACAATTGTCACC+GGG | 0.606469 | 4.1:+14981912 | MS.gene09226:CDS |
| AATGGAACCAGTTACGAACC+CGG | 0.608529 | 4.1:+14983969 | MS.gene09226:CDS |
| CCAGTGTAAGAGATGACAGA+TGG | 0.610309 | 4.1:-14986029 | None:intergenic |
| TTATTCCTCTGAGACTACAA+AGG | 0.612910 | 4.1:+14984330 | MS.gene09226:CDS |
| AGGGATGATGTGCAAGCAAG+AGG | 0.613198 | 4.1:+14982250 | MS.gene09226:CDS |
| CAGTCCACCCATTGACATCA+CGG | 0.613503 | 4.1:-14985552 | None:intergenic |
| CGGGAAGTAGATGAAGAGAC+GGG | 0.614610 | 4.1:+14985424 | MS.gene09226:CDS |
| CATATAGTACTCAGAATCCA+GGG | 0.621356 | 4.1:+14981964 | MS.gene09226:CDS |
| AGTAACCTTAAAGTCAGCTG+AGG | 0.622511 | 4.1:-14982111 | None:intergenic |
| CCTGTTGAGCTAATTCAGGA+TGG | 0.622578 | 4.1:+14985004 | MS.gene09226:CDS |
| CCGAAAACAGAAAGTAGATG+TGG | 0.623324 | 4.1:+14987009 | MS.gene09226:CDS |
| CTGTAGGAGAAGCCCACGAA+CGG | 0.626185 | 4.1:+14980523 | MS.gene09226:CDS |
| CTCTCTGGATCAGATAACCA+GGG | 0.627302 | 4.1:+14982284 | MS.gene09226:CDS |
| GCGGGCATAAGGGACTGGCA+GGG | 0.631483 | 4.1:+14985980 | MS.gene09226:CDS |
| GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 4.1:+14986889 | MS.gene09226:CDS |
| ACTGGCAGGGTATCTTTCTG+AGG | 0.634962 | 4.1:+14985993 | MS.gene09226:CDS |
| AATGGAATGACTTACTCAGA+AGG | 0.637909 | 4.1:+14982068 | MS.gene09226:CDS |
| CAGGCCCAGGCAGAATCAGA+GGG | 0.639349 | 4.1:-14984959 | None:intergenic |
| ATACAACTCAGGCAGCTGCA+CGG | 0.642481 | 4.1:+14986181 | MS.gene09226:CDS |
| GTACTATATGAGCTAGGACT+CGG | 0.643924 | 4.1:-14981951 | None:intergenic |
| AGAGCAGGGGATTATTCACA+TGG | 0.645001 | 4.1:+14985465 | MS.gene09226:CDS |
| CCAAACCACAGAATCATCAA+GGG | 0.649452 | 4.1:+14982231 | MS.gene09226:CDS |
| AGCTAAGGTATCTTTGAGTG+AGG | 0.652018 | 4.1:-14986148 | None:intergenic |
| TATATCAAGAAGCTCAAAGG+AGG | 0.652824 | 4.1:+14979780 | MS.gene09226:CDS |
| TCAATTCAGAAGAAATATCG+AGG | 0.658574 | 4.1:+14986375 | MS.gene09226:CDS |
| TGAGAAGTATCGTCAAGCCA+AGG | 0.663944 | 4.1:+14987108 | MS.gene09226:CDS |
| ATAAATTGTTACTATGCACA+TGG | 0.664247 | 4.1:+14981126 | MS.gene09226:CDS |
| ACAAACCTTTGTAGTCTCAG+AGG | 0.664931 | 4.1:-14984335 | None:intergenic |
| CTTTGTCCAAGAAAGAGCAG+GGG | 0.667079 | 4.1:+14985452 | MS.gene09226:CDS |
| GGAAAATATTGCTTTCAGTG+AGG | 0.667748 | 4.1:+14986119 | MS.gene09226:CDS |
| AGAACCCTACTTTCCAGAGG+CGG | 0.671098 | 4.1:+14981154 | MS.gene09226:CDS |
| ATTTCCGTGATGTCAATGGG+TGG | 0.671605 | 4.1:+14985548 | MS.gene09226:CDS |
| GTGACTTCATCAACACCTTG+AGG | 0.672304 | 4.1:-14984142 | None:intergenic |
| TGAGCTATCTAAAAGTTCTG+CGG | 0.677458 | 4.1:+14986059 | MS.gene09226:CDS |
| AAGGCAGTCTCCCCAGAATG+GGG | 0.679096 | 4.1:+14984307 | MS.gene09226:CDS |
| AGCAGAACCCTACTTTCCAG+AGG | 0.679127 | 4.1:+14981151 | MS.gene09226:CDS |
| GGAAAGATGGTCATGCCTGG+CGG | 0.682808 | 4.1:+14980481 | MS.gene09226:CDS |
| AGATGGCGGAGAAAAGGAGT+CGG | 0.685188 | 4.1:+14986920 | MS.gene09226:CDS |
| ATCTGATCCAGAGAGAGCTG+TGG | 0.687625 | 4.1:-14982276 | None:intergenic |
| TTCATAGGCGTCATAAACAA+CGG | 0.687883 | 4.1:-14981994 | None:intergenic |
| AGAGGAATAACCCCATTCTG+GGG | 0.688939 | 4.1:-14984317 | None:intergenic |
| ACAAGGTTGTGCTAAGATGG+CGG | 0.689666 | 4.1:+14986906 | MS.gene09226:CDS |
| TCTCTGGATCAGATAACCAG+GGG | 0.711574 | 4.1:+14982285 | MS.gene09226:CDS |
| AGCATCAGGAGATTTGACCA+TGG | 0.713604 | 4.1:-14987062 | None:intergenic |
| TCATCCATAGAAGAATATGG+AGG | 0.715779 | 4.1:-14984169 | None:intergenic |
| TAAAGGATAAGCTACAGGCG+TGG | 0.717250 | 4.1:+14985386 | MS.gene09226:CDS |
| AGATCCAATTGGTAAAACTG+CGG | 0.717630 | 4.1:+14985939 | MS.gene09226:CDS |
| TGTAATGAACGAGAACAATG+TGG | 0.718490 | 4.1:-14981461 | None:intergenic |
| TCATTACAGAGACACAAGTG+AGG | 0.732114 | 4.1:+14981476 | MS.gene09226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14979299 | 14987480 | 14979299 | ID=MS.gene09226 |
| chr4.1 | mRNA | 14979299 | 14987480 | 14979299 | ID=MS.gene09226.t1;Parent=MS.gene09226 |
| chr4.1 | exon | 14979299 | 14979308 | 14979299 | ID=MS.gene09226.t1.exon1;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14979299 | 14979308 | 14979299 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14979756 | 14979887 | 14979756 | ID=MS.gene09226.t1.exon2;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14979756 | 14979887 | 14979756 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14980436 | 14980551 | 14980436 | ID=MS.gene09226.t1.exon3;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14980436 | 14980551 | 14980436 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14981108 | 14981196 | 14981108 | ID=MS.gene09226.t1.exon4;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14981108 | 14981196 | 14981108 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14981452 | 14981497 | 14981452 | ID=MS.gene09226.t1.exon5;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14981452 | 14981497 | 14981452 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14981894 | 14982338 | 14981894 | ID=MS.gene09226.t1.exon6;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14981894 | 14982338 | 14981894 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14983723 | 14983823 | 14983723 | ID=MS.gene09226.t1.exon7;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14983723 | 14983823 | 14983723 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14983946 | 14984036 | 14983946 | ID=MS.gene09226.t1.exon8;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14983946 | 14984036 | 14983946 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14984128 | 14984351 | 14984128 | ID=MS.gene09226.t1.exon9;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14984128 | 14984351 | 14984128 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14984929 | 14985602 | 14984929 | ID=MS.gene09226.t1.exon10;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14984929 | 14985602 | 14984929 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14985870 | 14986452 | 14985870 | ID=MS.gene09226.t1.exon11;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14985870 | 14986452 | 14985870 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14986842 | 14987129 | 14986842 | ID=MS.gene09226.t1.exon12;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14986842 | 14987129 | 14986842 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| chr4.1 | exon | 14987397 | 14987480 | 14987397 | ID=MS.gene09226.t1.exon13;Parent=MS.gene09226.t1 |
| chr4.1 | CDS | 14987397 | 14987480 | 14987397 | ID=cds.MS.gene09226.t1;Parent=MS.gene09226.t1 |
| Gene Sequence |
| Protein sequence |