Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09236.t1 | XP_003630500.1 | 92.9 | 241 | 11 | 2 | 1 | 241 | 1 | 235 | 4.80E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09236.t1 | Q9SFC6 | 63.5 | 178 | 61 | 1 | 61 | 238 | 65 | 238 | 8.2e-62 | 238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09236.t1 | G7LHB3 | 92.9 | 241 | 11 | 2 | 1 | 241 | 1 | 235 | 3.5e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051687 | MS.gene09236 | 0.826566 | 2.53E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene09236 | 0.80011 | 1.68E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09236.t1 | MTR_8g097200 | 95.436 | 241 | 5 | 2 | 1 | 241 | 1 | 235 | 1.13e-168 | 464 |
| MS.gene09236.t1 | MTR_3g084940 | 66.260 | 246 | 62 | 5 | 1 | 241 | 1 | 230 | 2.21e-103 | 299 |
| MS.gene09236.t1 | MTR_4g133060 | 67.232 | 177 | 54 | 1 | 61 | 237 | 23 | 195 | 8.55e-85 | 251 |
| MS.gene09236.t1 | MTR_4g133060 | 67.232 | 177 | 54 | 1 | 61 | 237 | 49 | 221 | 1.09e-84 | 251 |
| MS.gene09236.t1 | MTR_3g082970 | 63.684 | 190 | 65 | 1 | 48 | 237 | 40 | 225 | 4.11e-84 | 250 |
| MS.gene09236.t1 | MTR_2g025740 | 63.536 | 181 | 62 | 1 | 57 | 237 | 56 | 232 | 6.88e-83 | 247 |
| MS.gene09236.t1 | MTR_4g133060 | 65.680 | 169 | 58 | 0 | 61 | 229 | 49 | 217 | 5.65e-77 | 232 |
| MS.gene09236.t1 | MTR_7g097270 | 46.667 | 195 | 95 | 4 | 43 | 236 | 32 | 218 | 1.83e-57 | 182 |
| MS.gene09236.t1 | MTR_7g097270 | 46.875 | 128 | 63 | 3 | 43 | 169 | 32 | 155 | 1.90e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09236.t1 | AT3G07880 | 62.304 | 191 | 68 | 1 | 49 | 239 | 53 | 239 | 1.95e-84 | 251 |
| MS.gene09236.t1 | AT1G62450 | 58.659 | 179 | 68 | 2 | 61 | 237 | 48 | 222 | 5.67e-69 | 211 |
| MS.gene09236.t1 | AT1G12070 | 58.101 | 179 | 69 | 2 | 61 | 237 | 48 | 222 | 2.26e-68 | 210 |
Find 63 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCAAGCTGTTCTTTA+AGG | 0.103059 | 4.1:+14863059 | None:intergenic |
| ACCAATGTTGTTTGGAAAAC+TGG | 0.188780 | 4.1:-14862326 | MS.gene09236:CDS |
| GCTACTTGGATGCTAGTTAT+AGG | 0.254947 | 4.1:-14861836 | MS.gene09236:CDS |
| TCTTCCAATTCATATGTATA+TGG | 0.260334 | 4.1:+14862146 | None:intergenic |
| AGCATTGAAGGAAACATCTT+TGG | 0.319587 | 4.1:+14863222 | None:intergenic |
| GTCTCCAACAACATAGTTTC+TGG | 0.320251 | 4.1:-14862359 | MS.gene09236:CDS |
| GAAGAAGAAATTACTCCTTC+AGG | 0.321742 | 4.1:-14862128 | MS.gene09236:CDS |
| TTTCTCAAGCTGTTCTTTAA+GGG | 0.328321 | 4.1:+14863060 | None:intergenic |
| TCTTCCTCTTCATCTTCATC+TGG | 0.347069 | 4.1:+14863124 | None:intergenic |
| ATGATGAAAGCTTGAGGAAA+TGG | 0.349670 | 4.1:-14862935 | MS.gene09236:CDS |
| AAATGGAAAGAGCAACTTCT+AGG | 0.351067 | 4.1:-14862918 | MS.gene09236:CDS |
| TCAAATATACCAATGTTGTT+TGG | 0.363873 | 4.1:-14862334 | MS.gene09236:CDS |
| GAATCAGCGGTGAATGGAAT+TGG | 0.371922 | 4.1:+14862443 | None:intergenic |
| AGGCTCACTATCTTCACTTC+TGG | 0.373576 | 4.1:+14862503 | None:intergenic |
| GGTTTGAGATTCAGAAGAAT+TGG | 0.376482 | 4.1:-14861815 | MS.gene09236:CDS |
| AGGCCTTCCTTGGCATATAA+TGG | 0.379225 | 4.1:+14862478 | None:intergenic |
| TGTTTCCTTCAATGCTCATT+TGG | 0.380600 | 4.1:-14863215 | MS.gene09236:CDS |
| GGAAGAACCTAAGTTGGAAT+TGG | 0.382333 | 4.1:-14863101 | MS.gene09236:CDS |
| TTCCTCCAAATGAGCATTGA+AGG | 0.385347 | 4.1:+14863210 | None:intergenic |
| GGAACCATATACATATGAAT+TGG | 0.395037 | 4.1:-14862150 | MS.gene09236:CDS |
| CCTAAGTTGGAATTGGATCT+TGG | 0.402975 | 4.1:-14863094 | MS.gene09236:CDS |
| CCAAGATCCAATTCCAACTT+AGG | 0.415301 | 4.1:+14863094 | None:intergenic |
| CCAATGTTGTTTGGAAAACT+GGG | 0.429548 | 4.1:-14862325 | MS.gene09236:CDS |
| TGCCTTGGTTCTTGCTGAGT+AGG | 0.432503 | 4.1:+14862088 | None:intergenic |
| GTTTGGAAAACTGGGGTTAG+AGG | 0.436517 | 4.1:-14862317 | MS.gene09236:intron |
| GAGGCCAGAAACTATGTTGT+TGG | 0.443718 | 4.1:+14862355 | None:intergenic |
| GGAAGAGGAAGAACCTAAGT+TGG | 0.456835 | 4.1:-14863107 | MS.gene09236:CDS |
| ATAGTTGACACCAACCTTGT+TGG | 0.461291 | 4.1:+14863168 | None:intergenic |
| AGATTAGGTCAGGCCTTCCT+TGG | 0.466881 | 4.1:+14862468 | None:intergenic |
| AAACAACATTGGTATATTTG+AGG | 0.467217 | 4.1:+14862336 | None:intergenic |
| TCAAGGAAGGAAGCCAATAC+AGG | 0.471561 | 4.1:-14862400 | MS.gene09236:CDS |
| TATGTATATGGTTCCTGCTG+TGG | 0.482809 | 4.1:+14862158 | None:intergenic |
| TTCCTTCAATGCTCATTTGG+AGG | 0.498763 | 4.1:-14863212 | MS.gene09236:CDS |
| TGATGATCGCAAATGCTACT+TGG | 0.504667 | 4.1:-14861850 | MS.gene09236:CDS |
| GAGAACACCAAGAAAATGTT+GGG | 0.505438 | 4.1:-14862191 | MS.gene09236:CDS |
| AGATGAAGATGAAGAGGAAG+AGG | 0.507523 | 4.1:-14863122 | MS.gene09236:CDS |
| GGAATTGGCAAGATTAGGTC+AGG | 0.511505 | 4.1:+14862458 | None:intergenic |
| AATCTGTCTCAGTGTGGTGT+AGG | 0.514298 | 4.1:+14861792 | None:intergenic |
| AAAGAGCATGTTCACTCTCA+AGG | 0.517312 | 4.1:-14862417 | MS.gene09236:CDS |
| GGAGAACACCAAGAAAATGT+TGG | 0.520006 | 4.1:-14862192 | MS.gene09236:CDS |
| CCTTCAGGCTTGTTTGCTAG+AGG | 0.534121 | 4.1:-14862113 | MS.gene09236:CDS |
| TGAATGGAATTGGCAAGATT+AGG | 0.534268 | 4.1:+14862453 | None:intergenic |
| ATGTATATGGTTCCTGCTGT+GGG | 0.540348 | 4.1:+14862159 | None:intergenic |
| TGTGCCAGATGAAGATGAAG+AGG | 0.547332 | 4.1:-14863128 | MS.gene09236:CDS |
| GTGGATGTGTCTGCTGTTGG+AGG | 0.550509 | 4.1:-14862891 | MS.gene09236:intron |
| AATGTGGATGTGTCTGCTGT+TGG | 0.567791 | 4.1:-14862894 | MS.gene09236:CDS |
| AGAGCAACTTCTAGGAAATG+TGG | 0.570308 | 4.1:-14862910 | MS.gene09236:CDS |
| TTCCTTGGCATATAATGGTG+AGG | 0.572917 | 4.1:+14862483 | None:intergenic |
| TAAAGGATGATGAAAGCTTG+AGG | 0.574330 | 4.1:-14862941 | MS.gene09236:intron |
| AGCCTCACCATTATATGCCA+AGG | 0.579531 | 4.1:-14862485 | MS.gene09236:CDS |
| GGGAACTTATAGCCCACAGC+AGG | 0.598988 | 4.1:-14862171 | MS.gene09236:CDS |
| AGCATGTTCACTCTCAAGGA+AGG | 0.602637 | 4.1:-14862413 | MS.gene09236:CDS |
| AACAAAGGAACCAACAAGGT+TGG | 0.603340 | 4.1:-14863178 | MS.gene09236:CDS |
| GTTCTTTAAGGGAAAACTGA+GGG | 0.605683 | 4.1:+14863071 | None:intergenic |
| TTGACAATGTCTGCTGCTGT+AGG | 0.616083 | 4.1:-14863259 | None:intergenic |
| TCACCATTATATGCCAAGGA+AGG | 0.618936 | 4.1:-14862481 | MS.gene09236:CDS |
| CCTCTAGCAAACAAGCCTGA+AGG | 0.625848 | 4.1:+14862113 | None:intergenic |
| TATGTTGTTGGAGACAGTGA+AGG | 0.635616 | 4.1:+14862367 | None:intergenic |
| CAATGTTGTTTGGAAAACTG+GGG | 0.646093 | 4.1:-14862324 | MS.gene09236:CDS |
| AACCTACTCAGCAAGAACCA+AGG | 0.671480 | 4.1:-14862090 | MS.gene09236:CDS |
| TGTTCTTTAAGGGAAAACTG+AGG | 0.676471 | 4.1:+14863070 | None:intergenic |
| AATTTCAATCTGTCTCAGTG+TGG | 0.687125 | 4.1:+14861786 | None:intergenic |
| TGTCAACTATGATGATGCTG+AGG | 0.722211 | 4.1:-14863155 | MS.gene09236:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTATTTTATT+TGG | - | chr4.1:14863140-14863159 | MS.gene09236:CDS | 0.0% |
| !!! | AATTTTGTTTTGTATTTTAA+AGG | - | chr4.1:14862095-14862114 | MS.gene09236:CDS | 10.0% |
| !! | ATAAAAGAAGTCAATTAAAT+TGG | + | chr4.1:14862297-14862316 | None:intergenic | 15.0% |
| !! | TTATGAATTTATTGAAATAG+TGG | - | chr4.1:14862840-14862859 | MS.gene09236:intron | 15.0% |
| !! | TCAATTAAATTGGAAAAAGA+GGG | + | chr4.1:14862287-14862306 | None:intergenic | 20.0% |
| !!! | TTTAATTGACTTCTTTTATC+AGG | - | chr4.1:14862298-14862317 | MS.gene09236:intron | 20.0% |
| ! | AAACAACATTGGTATATTTG+AGG | + | chr4.1:14862720-14862739 | None:intergenic | 25.0% |
| ! | AGAAGAAAAACAAAATCGAA+AGG | + | chr4.1:14862198-14862217 | None:intergenic | 25.0% |
| ! | GTCAATTAAATTGGAAAAAG+AGG | + | chr4.1:14862288-14862307 | None:intergenic | 25.0% |
| ! | TCAAATATACCAATGTTGTT+TGG | - | chr4.1:14862719-14862738 | MS.gene09236:intron | 25.0% |
| ! | TCTTACTGAAACATAAATTG+AGG | + | chr4.1:14862773-14862792 | None:intergenic | 25.0% |
| ! | TCTTCCAATTCATATGTATA+TGG | + | chr4.1:14862910-14862929 | None:intergenic | 25.0% |
| ! | TGAAACTAACACATACTTAT+CGG | - | chr4.1:14863167-14863186 | MS.gene09236:CDS | 25.0% |
| ! | TGTTAATAAAAACAAGAACC+CGG | + | chr4.1:14862491-14862510 | None:intergenic | 25.0% |
| ! | TTTGAATTGTCTTAGTTATG+TGG | - | chr4.1:14862814-14862833 | MS.gene09236:intron | 25.0% |
| !!! | AGTAAGGTTCTTTTTTGAAA+TGG | - | chr4.1:14862021-14862040 | MS.gene09236:intron | 25.0% |
| !!! | CTTCTGAAACAATTCTTAAA+TGG | - | chr4.1:14862213-14862232 | MS.gene09236:intron | 25.0% |
| !!! | GTAGTGTTTTTTTGATGAAT+TGG | - | chr4.1:14862071-14862090 | MS.gene09236:intron | 25.0% |
| AGCTTGAGAAAGATAAAGTA+AGG | - | chr4.1:14862005-14862024 | MS.gene09236:intron | 30.0% | |
| GGAACCATATACATATGAAT+TGG | - | chr4.1:14862903-14862922 | MS.gene09236:CDS | 30.0% | |
| TTTCTCAAGCTGTTCTTTAA+GGG | + | chr4.1:14861996-14862015 | None:intergenic | 30.0% | |
| ! | ATAAGTTCCCAACATTTTCT+TGG | + | chr4.1:14862872-14862891 | None:intergenic | 30.0% |
| ! | ATTTTGTAAGTTTCTTGCCT+TGG | + | chr4.1:14862983-14863002 | None:intergenic | 30.0% |
| ! | CTCTCATCTTTTACATTTAC+AGG | - | chr4.1:14862337-14862356 | MS.gene09236:CDS | 30.0% |
| AAAAAATCCTGATCGTGTCT+TGG | - | chr4.1:14862418-14862437 | MS.gene09236:CDS | 35.0% | |
| AAATGGAAAGAGCAACTTCT+AGG | - | chr4.1:14862135-14862154 | MS.gene09236:CDS | 35.0% | |
| ATGATGAAAGCTTGAGGAAA+TGG | - | chr4.1:14862118-14862137 | MS.gene09236:CDS | 35.0% | |
| CAAAAACAAAGGAACCAACA+AGG | - | chr4.1:14861871-14861890 | MS.gene09236:intron | 35.0% | |
| CTTTCTCAAGCTGTTCTTTA+AGG | + | chr4.1:14861997-14862016 | None:intergenic | 35.0% | |
| GAAGAAGAAATTACTCCTTC+AGG | - | chr4.1:14862925-14862944 | MS.gene09236:CDS | 35.0% | |
| GAGAACACCAAGAAAATGTT+GGG | - | chr4.1:14862862-14862881 | MS.gene09236:intron | 35.0% | |
| TAAAGGATGATGAAAGCTTG+AGG | - | chr4.1:14862112-14862131 | MS.gene09236:CDS | 35.0% | |
| TCTCTACATCACAACAAGAT+AGG | + | chr4.1:14862522-14862541 | None:intergenic | 35.0% | |
| TGAATGGAATTGGCAAGATT+AGG | + | chr4.1:14862603-14862622 | None:intergenic | 35.0% | |
| TGTCAATGCTACACAAGTAA+CGG | + | chr4.1:14863037-14863056 | None:intergenic | 35.0% | |
| TGTTTCCTTCAATGCTCATT+TGG | - | chr4.1:14861838-14861857 | MS.gene09236:CDS | 35.0% | |
| ! | ACCAATGTTGTTTGGAAAAC+TGG | - | chr4.1:14862727-14862746 | MS.gene09236:intron | 35.0% |
| ! | AGCATTGAAGGAAACATCTT+TGG | + | chr4.1:14861834-14861853 | None:intergenic | 35.0% |
| ! | CAATGTTGTTTGGAAAACTG+GGG | - | chr4.1:14862729-14862748 | MS.gene09236:intron | 35.0% |
| ! | CCAATGTTGTTTGGAAAACT+GGG | - | chr4.1:14862728-14862747 | MS.gene09236:intron | 35.0% |
| ! | GGTTTGAGATTCAGAAGAAT+TGG | - | chr4.1:14863238-14863257 | MS.gene09236:CDS | 35.0% |
| ! | GTTCTTTAAGGGAAAACTGA+GGG | + | chr4.1:14861985-14862004 | None:intergenic | 35.0% |
| ! | TGTTCTTTAAGGGAAAACTG+AGG | + | chr4.1:14861986-14862005 | None:intergenic | 35.0% |
| !! | AGGAGAATTTTAGCCTGTAT+TGG | + | chr4.1:14862669-14862688 | None:intergenic | 35.0% |
| !!! | AAGACACGATCAGGATTTTT+TGG | + | chr4.1:14862419-14862438 | None:intergenic | 35.0% |
| !!! | AGGATTTTTTGGCCGAAATT+TGG | + | chr4.1:14862408-14862427 | None:intergenic | 35.0% |
| !!! | TTTTTTGGCCGAAATTTGGT+TGG | + | chr4.1:14862404-14862423 | None:intergenic | 35.0% |
| AACAAAGGAACCAACAAGGT+TGG | - | chr4.1:14861875-14861894 | MS.gene09236:intron | 40.0% | |
| AGATGAAGATGAAGAGGAAG+AGG | - | chr4.1:14861931-14861950 | MS.gene09236:intron | 40.0% | |
| ATAGTTGACACCAACCTTGT+TGG | + | chr4.1:14861888-14861907 | None:intergenic | 40.0% | |
| ATGTATATGGTTCCTGCTGT+GGG | + | chr4.1:14862897-14862916 | None:intergenic | 40.0% | |
| CAAGATTTGTCTGAATCGGT+TGG | - | chr4.1:14862450-14862469 | MS.gene09236:CDS | 40.0% | |
| CAGCATGTCCAACCAAATTT+CGG | - | chr4.1:14862393-14862412 | MS.gene09236:CDS | 40.0% | |
| CCAAGATCCAATTCCAACTT+AGG | + | chr4.1:14861962-14861981 | None:intergenic | 40.0% | |
| CGGTCAAGATTTGTCTGAAT+CGG | - | chr4.1:14862446-14862465 | MS.gene09236:CDS | 40.0% | |
| GCTACTTGGATGCTAGTTAT+AGG | - | chr4.1:14863217-14863236 | MS.gene09236:CDS | 40.0% | |
| GGAGAACACCAAGAAAATGT+TGG | - | chr4.1:14862861-14862880 | MS.gene09236:intron | 40.0% | |
| GTCTCCAACAACATAGTTTC+TGG | - | chr4.1:14862694-14862713 | MS.gene09236:intron | 40.0% | |
| TATGTATATGGTTCCTGCTG+TGG | + | chr4.1:14862898-14862917 | None:intergenic | 40.0% | |
| TATGTTGTTGGAGACAGTGA+AGG | + | chr4.1:14862689-14862708 | None:intergenic | 40.0% | |
| TCACCATTATATGCCAAGGA+AGG | - | chr4.1:14862572-14862591 | MS.gene09236:intron | 40.0% | |
| TCAGACAAATCTTGACCGTT+AGG | + | chr4.1:14862444-14862463 | None:intergenic | 40.0% | |
| TCTTCCTCTTCATCTTCATC+TGG | + | chr4.1:14861932-14861951 | None:intergenic | 40.0% | |
| TGATGATCGCAAATGCTACT+TGG | - | chr4.1:14863203-14863222 | MS.gene09236:CDS | 40.0% | |
| TGCGATCATCATCTACAAAC+TGG | + | chr4.1:14863194-14863213 | None:intergenic | 40.0% | |
| TTCCTTCAATGCTCATTTGG+AGG | - | chr4.1:14861841-14861860 | MS.gene09236:CDS | 40.0% | |
| TTCCTTGGCATATAATGGTG+AGG | + | chr4.1:14862573-14862592 | None:intergenic | 40.0% | |
| ! | AAAGAGCATGTTCACTCTCA+AGG | - | chr4.1:14862636-14862655 | MS.gene09236:intron | 40.0% |
| ! | AGAGCAACTTCTAGGAAATG+TGG | - | chr4.1:14862143-14862162 | MS.gene09236:CDS | 40.0% |
| ! | CCCAGTTTTCCAAACAACAT+TGG | + | chr4.1:14862731-14862750 | None:intergenic | 40.0% |
| ! | CCTAAGTTGGAATTGGATCT+TGG | - | chr4.1:14861959-14861978 | MS.gene09236:intron | 40.0% |
| ! | GAGAGTGAACATGCTCTTTT+TGG | + | chr4.1:14862635-14862654 | None:intergenic | 40.0% |
| ! | GAGGAAGAGCACAAAAACAA+AGG | - | chr4.1:14861860-14861879 | MS.gene09236:intron | 40.0% |
| ! | GGAAGAACCTAAGTTGGAAT+TGG | - | chr4.1:14861952-14861971 | MS.gene09236:intron | 40.0% |
| ! | TGTCAACTATGATGATGCTG+AGG | - | chr4.1:14861898-14861917 | MS.gene09236:intron | 40.0% |
| !! | TTCCTCCAAATGAGCATTGA+AGG | + | chr4.1:14861846-14861865 | None:intergenic | 40.0% |
| !!! | CATGCTCTTTTTGGAATCAG+CGG | + | chr4.1:14862626-14862645 | None:intergenic | 40.0% |
| !!! | TTTTTGGAATCAGCGGTGAA+TGG | + | chr4.1:14862619-14862638 | None:intergenic | 40.0% |
| AACCTACTCAGCAAGAACCA+AGG | - | chr4.1:14862963-14862982 | MS.gene09236:intron | 45.0% | |
| AATGTGGATGTGTCTGCTGT+TGG | - | chr4.1:14862159-14862178 | MS.gene09236:CDS | 45.0% | |
| AGCATGTTCACTCTCAAGGA+AGG | - | chr4.1:14862640-14862659 | MS.gene09236:intron | 45.0% | |
| AGCCTCACCATTATATGCCA+AGG | - | chr4.1:14862568-14862587 | MS.gene09236:intron | 45.0% | |
| AGGCCTTCCTTGGCATATAA+TGG | + | chr4.1:14862578-14862597 | None:intergenic | 45.0% | |
| AGGCTCACTATCTTCACTTC+TGG | + | chr4.1:14862553-14862572 | None:intergenic | 45.0% | |
| CGAAATTTGGTTGGACATGC+TGG | + | chr4.1:14862395-14862414 | None:intergenic | 45.0% | |
| GAATCAGCGGTGAATGGAAT+TGG | + | chr4.1:14862613-14862632 | None:intergenic | 45.0% | |
| GAGGCCAGAAACTATGTTGT+TGG | + | chr4.1:14862701-14862720 | None:intergenic | 45.0% | |
| GGAAGAGGAAGAACCTAAGT+TGG | - | chr4.1:14861946-14861965 | MS.gene09236:intron | 45.0% | |
| GGAATTGGCAAGATTAGGTC+AGG | + | chr4.1:14862598-14862617 | None:intergenic | 45.0% | |
| GTTTGGAAAACTGGGGTTAG+AGG | - | chr4.1:14862736-14862755 | MS.gene09236:intron | 45.0% | |
| TCAAGGAAGGAAGCCAATAC+AGG | - | chr4.1:14862653-14862672 | MS.gene09236:intron | 45.0% | |
| TGTGCCAGATGAAGATGAAG+AGG | - | chr4.1:14861925-14861944 | MS.gene09236:intron | 45.0% | |
| AGATTAGGTCAGGCCTTCCT+TGG | + | chr4.1:14862588-14862607 | None:intergenic | 50.0% | |
| CCTCTAGCAAACAAGCCTGA+AGG | + | chr4.1:14862943-14862962 | None:intergenic | 50.0% | |
| CTGATCGTGTCTTGGCCTAA+CGG | - | chr4.1:14862426-14862445 | MS.gene09236:CDS | 50.0% | |
| GACATGCTGGACTGCTATAG+AGG | + | chr4.1:14862382-14862401 | None:intergenic | 50.0% | |
| TTGGCCTGCTATAGAGGATC+CGG | - | chr4.1:14862469-14862488 | MS.gene09236:CDS | 50.0% | |
| ! | CCTTCAGGCTTGTTTGCTAG+AGG | - | chr4.1:14862940-14862959 | MS.gene09236:intron | 50.0% |
| ! | TGCCTTGGTTCTTGCTGAGT+AGG | + | chr4.1:14862968-14862987 | None:intergenic | 50.0% |
| !! | AATCGGTTGGCCTGCTATAG+AGG | - | chr4.1:14862463-14862482 | MS.gene09236:CDS | 50.0% |
| CGTTAGGCCAAGACACGATC+AGG | + | chr4.1:14862428-14862447 | None:intergenic | 55.0% | |
| GAACCCGGATCCTCTATAGC+AGG | + | chr4.1:14862476-14862495 | None:intergenic | 55.0% | |
| GCTGGACTGCTATAGAGGTG+AGG | + | chr4.1:14862377-14862396 | None:intergenic | 55.0% | |
| GGGAACTTATAGCCCACAGC+AGG | - | chr4.1:14862882-14862901 | MS.gene09236:intron | 55.0% | |
| GTGGATGTGTCTGCTGTTGG+AGG | - | chr4.1:14862162-14862181 | MS.gene09236:CDS | 55.0% | |
| TGGCCTGCTATAGAGGATCC+GGG | - | chr4.1:14862470-14862489 | MS.gene09236:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14861800 | 14863275 | 14861800 | ID=MS.gene09236 |
| chr4.1 | mRNA | 14861800 | 14863275 | 14861800 | ID=MS.gene09236.t1;Parent=MS.gene09236 |
| chr4.1 | exon | 14863054 | 14863275 | 14863054 | ID=MS.gene09236.t1.exon1;Parent=MS.gene09236.t1 |
| chr4.1 | CDS | 14863054 | 14863275 | 14863054 | ID=cds.MS.gene09236.t1;Parent=MS.gene09236.t1 |
| chr4.1 | exon | 14862892 | 14862958 | 14862892 | ID=MS.gene09236.t1.exon2;Parent=MS.gene09236.t1 |
| chr4.1 | CDS | 14862892 | 14862958 | 14862892 | ID=cds.MS.gene09236.t1;Parent=MS.gene09236.t1 |
| chr4.1 | exon | 14862318 | 14862536 | 14862318 | ID=MS.gene09236.t1.exon3;Parent=MS.gene09236.t1 |
| chr4.1 | CDS | 14862318 | 14862536 | 14862318 | ID=cds.MS.gene09236.t1;Parent=MS.gene09236.t1 |
| chr4.1 | exon | 14862072 | 14862215 | 14862072 | ID=MS.gene09236.t1.exon4;Parent=MS.gene09236.t1 |
| chr4.1 | CDS | 14862072 | 14862215 | 14862072 | ID=cds.MS.gene09236.t1;Parent=MS.gene09236.t1 |
| chr4.1 | exon | 14861800 | 14861873 | 14861800 | ID=MS.gene09236.t1.exon5;Parent=MS.gene09236.t1 |
| chr4.1 | CDS | 14861800 | 14861873 | 14861800 | ID=cds.MS.gene09236.t1;Parent=MS.gene09236.t1 |
| Gene Sequence |
| Protein sequence |
