Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09579.t1 | XP_003611614.1 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.00E-124 | 456.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09579.t1 | Q9SZE8 | 55.3 | 246 | 89 | 6 | 1 | 231 | 1 | 240 | 4.9e-64 | 245.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09579.t1 | G7K3V2 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 7.2e-125 | 456.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09579.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011734 | MS.gene09579 | PPI |
| MS.gene09579 | MS.gene041894 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09579.t1 | MTR_5g015880 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 4.55e-164 | 452 |
| MS.gene09579.t1 | MTR_4g095600 | 70.124 | 241 | 54 | 6 | 1 | 231 | 1 | 233 | 6.63e-111 | 318 |
| MS.gene09579.t1 | MTR_1g106420 | 55.921 | 152 | 62 | 3 | 1 | 147 | 1 | 152 | 7.59e-54 | 172 |
| MS.gene09579.t1 | MTR_7g007010 | 64.545 | 110 | 39 | 0 | 1 | 110 | 3 | 112 | 5.98e-52 | 170 |
| MS.gene09579.t1 | MTR_6g018270 | 61.818 | 110 | 42 | 0 | 1 | 110 | 3 | 112 | 2.00e-49 | 163 |
| MS.gene09579.t1 | MTR_6g453130 | 48.684 | 152 | 71 | 4 | 1 | 147 | 3 | 152 | 8.00e-46 | 152 |
| MS.gene09579.t1 | MTR_1g110840 | 51.128 | 133 | 61 | 2 | 1 | 131 | 3 | 133 | 7.43e-45 | 150 |
| MS.gene09579.t1 | MTR_6g054150 | 48.120 | 133 | 65 | 3 | 1 | 131 | 3 | 133 | 1.15e-40 | 139 |
| MS.gene09579.t1 | MTR_6g054080 | 47.368 | 133 | 66 | 3 | 1 | 131 | 3 | 133 | 1.41e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09579.t1 | AT4G37540 | 56.048 | 248 | 84 | 8 | 1 | 231 | 1 | 240 | 9.69e-82 | 244 |
| MS.gene09579.t1 | AT3G49940 | 56.641 | 256 | 77 | 10 | 1 | 231 | 1 | 247 | 1.48e-79 | 239 |
| MS.gene09579.t1 | AT5G67420 | 52.549 | 255 | 92 | 6 | 1 | 231 | 1 | 250 | 2.72e-74 | 226 |
| MS.gene09579.t1 | AT5G67420 | 52.549 | 255 | 92 | 6 | 1 | 231 | 1 | 250 | 2.72e-74 | 226 |
| MS.gene09579.t1 | AT1G67100 | 64.545 | 110 | 39 | 0 | 1 | 110 | 3 | 112 | 5.04e-51 | 166 |
| MS.gene09579.t1 | AT3G02550 | 63.636 | 110 | 40 | 0 | 1 | 110 | 3 | 112 | 3.03e-49 | 162 |
| MS.gene09579.t1 | AT1G68510 | 60.177 | 113 | 43 | 1 | 1 | 111 | 3 | 115 | 8.51e-47 | 155 |
Find 76 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATGAACCGGACTTTC+TGG | 0.160468 | 5.2:-7607789 | None:intergenic |
| GAAACTCCGGTAAGGGTTTA+AGG | 0.160922 | 5.2:-7607678 | None:intergenic |
| ACGCGTTGACCAACGGTTTC+CGG | 0.249914 | 5.2:+7607896 | MS.gene09579:CDS |
| ATTAAAATTCTCAAACAAAA+AGG | 0.262922 | 5.2:-7608044 | None:intergenic |
| GTGGCATGACCTTGAGCTTC+AGG | 0.279564 | 5.2:-7607303 | None:intergenic |
| ACTCACTACAACCCTTTCTA+AGG | 0.331551 | 5.2:-7607242 | None:intergenic |
| GAATTCATCGACGGTGTTCC+CGG | 0.351208 | 5.2:-7607934 | None:intergenic |
| GGACTTTCTGGTTCGGATCT+CGG | 0.355586 | 5.2:-7607777 | None:intergenic |
| AGTCCGACAGCACCGTTAAC+GGG | 0.370602 | 5.2:-7607592 | None:intergenic |
| ACGCGTTCTGTGGCGTTAAC+CGG | 0.381628 | 5.2:-7607879 | None:intergenic |
| CGGAACCCTTAAACCCTTAC+CGG | 0.384595 | 5.2:+7607672 | MS.gene09579:CDS |
| AAAGTCCGGTTCATGAGTTC+TGG | 0.390533 | 5.2:+7607793 | MS.gene09579:CDS |
| TATTACGCCCTTGTATTCAA+TGG | 0.394479 | 5.2:+7607271 | MS.gene09579:CDS |
| AAGTCCGACAGCACCGTTAA+CGG | 0.413291 | 5.2:-7607593 | None:intergenic |
| AAACTCCGGTAAGGGTTTAA+GGG | 0.432686 | 5.2:-7607677 | None:intergenic |
| AAACCCTTACCGGAGTTTCT+CGG | 0.442329 | 5.2:+7607682 | MS.gene09579:CDS |
| CGGTTGCCGTGTCCTTAGAA+AGG | 0.456637 | 5.2:+7607230 | MS.gene09579:CDS |
| GGTGGTAAACGCAAGCGATC+AGG | 0.465080 | 5.2:+7607814 | MS.gene09579:CDS |
| TACCACCAGAACTCATGAAC+CGG | 0.478203 | 5.2:-7607798 | None:intergenic |
| ATGAACCGGACTTTCTGGTT+CGG | 0.483553 | 5.2:-7607784 | None:intergenic |
| AGCACCGTTAACGGGGTTCA+CGG | 0.485215 | 5.2:-7607584 | None:intergenic |
| TGTGACGACGGTGACGTGCT+TGG | 0.492180 | 5.2:+7607966 | MS.gene09579:CDS |
| TGGCATGACCTTGAGCTTCA+GGG | 0.492713 | 5.2:-7607302 | None:intergenic |
| GTTGAAACGGTGCTCGGTGG+CGG | 0.492913 | 5.2:+7607652 | MS.gene09579:CDS |
| CGGAGGGAAATTCGCCGGCC+GGG | 0.499369 | 5.2:+7607916 | MS.gene09579:CDS |
| AGAACCGTGAACCCCGTTAA+CGG | 0.510533 | 5.2:+7607580 | MS.gene09579:CDS |
| CCGGAGGGAAATTCGCCGGC+CGG | 0.514516 | 5.2:+7607915 | MS.gene09579:CDS |
| GTGTCAAGCGGCGGTTGAAA+CGG | 0.518728 | 5.2:+7607639 | MS.gene09579:CDS |
| TTACCAGGTCTCTGTGGTGA+AGG | 0.520683 | 5.2:-7607384 | None:intergenic |
| GGTTGCCGTGTCCTTAGAAA+GGG | 0.520856 | 5.2:+7607231 | MS.gene09579:CDS |
| CGTTAGAAATGAAAGACATA+AGG | 0.526325 | 5.2:-7607359 | None:intergenic |
| GCGTCTAAACCGAGAAACTC+CGG | 0.534500 | 5.2:-7607691 | None:intergenic |
| GAGATCCGAACCAGAAAGTC+CGG | 0.539752 | 5.2:+7607779 | MS.gene09579:CDS |
| TCATCGACGGTGTTCCCGGC+CGG | 0.542141 | 5.2:-7607930 | None:intergenic |
| ACGGTGACGTGCTTGGAAAG+TGG | 0.543942 | 5.2:+7607973 | MS.gene09579:CDS |
| GTATCGATCCATTGAATACA+AGG | 0.548656 | 5.2:-7607279 | None:intergenic |
| CGGTGACGTGCTTGGAAAGT+GGG | 0.551329 | 5.2:+7607974 | MS.gene09579:CDS |
| TACCAGGTCTCTGTGGTGAA+GGG | 0.560196 | 5.2:-7607383 | None:intergenic |
| TTCTGAGGAATCTGTGACGA+CGG | 0.564218 | 5.2:+7607954 | MS.gene09579:CDS |
| TGCTTGGAAAGTGGGATCGG+AGG | 0.566383 | 5.2:+7607982 | MS.gene09579:CDS |
| AAACCGAGAAACTCCGGTAA+GGG | 0.570584 | 5.2:-7607685 | None:intergenic |
| TAAACCGAGAAACTCCGGTA+AGG | 0.571879 | 5.2:-7607686 | None:intergenic |
| CCGTTGGTCAACGCGTTCTG+TGG | 0.575430 | 5.2:-7607889 | None:intergenic |
| GCGGCGGTTGAAACGGTGCT+CGG | 0.577386 | 5.2:+7607646 | MS.gene09579:CDS |
| GTTTCCGGAGGGAAATTCGC+CGG | 0.577846 | 5.2:+7607911 | MS.gene09579:CDS |
| AATTTCCCTCCGGAAACCGT+TGG | 0.583258 | 5.2:-7607905 | None:intergenic |
| ACCGTTGATGACTCATCTGA+AGG | 0.585962 | 5.2:+7607724 | MS.gene09579:CDS |
| ACGTGCTTGGAAAGTGGGAT+CGG | 0.586938 | 5.2:+7607979 | MS.gene09579:CDS |
| CCGGCCGGCGAATTTCCCTC+CGG | 0.587093 | 5.2:-7607915 | None:intergenic |
| AACCCCGTTAACGGTGCTGT+CGG | 0.588780 | 5.2:+7607589 | MS.gene09579:CDS |
| GTCCCTTCACCACAGAGACC+TGG | 0.592710 | 5.2:+7607381 | MS.gene09579:CDS |
| AGATTAAGATCAGTCGTCGC+CGG | 0.593377 | 5.2:-7607856 | None:intergenic |
| TCCTTCAGATGAGTCATCAA+CGG | 0.596231 | 5.2:-7607725 | None:intergenic |
| CGACGACTGATCTTAATCTC+CGG | 0.598907 | 5.2:+7607860 | MS.gene09579:CDS |
| AAGTCACGTGCAACGACGCG+CGG | 0.599047 | 5.2:+7607749 | MS.gene09579:CDS |
| CGTTGACCAACGGTTTCCGG+AGG | 0.601993 | 5.2:+7607899 | MS.gene09579:CDS |
| CCACAGAACGCGTTGACCAA+CGG | 0.603462 | 5.2:+7607889 | MS.gene09579:CDS |
| GGCATGACCTTGAGCTTCAG+GGG | 0.607961 | 5.2:-7607301 | None:intergenic |
| TACAACCCTTTCTAAGGACA+CGG | 0.609661 | 5.2:-7607236 | None:intergenic |
| ATCGATACCCCTGAAGCTCA+AGG | 0.611816 | 5.2:+7607294 | MS.gene09579:CDS |
| CAACTAGGTATGAGTTGCAA+CGG | 0.621586 | 5.2:+7607210 | None:intergenic |
| GTCCGGTTCATGAGTTCTGG+TGG | 0.622596 | 5.2:+7607796 | MS.gene09579:CDS |
| TGAAAGACATAAGGTCAGCA+CGG | 0.634887 | 5.2:-7607350 | None:intergenic |
| GTCCGACAGCACCGTTAACG+GGG | 0.636214 | 5.2:-7607591 | None:intergenic |
| AAACTGGCACGTGTGTCAAG+CGG | 0.645348 | 5.2:+7607627 | MS.gene09579:CDS |
| GTTGACCAACGGTTTCCGGA+GGG | 0.646523 | 5.2:+7607900 | MS.gene09579:CDS |
| CTGGCACGTGTGTCAAGCGG+CGG | 0.654365 | 5.2:+7607630 | MS.gene09579:CDS |
| TTCAGATGAGTCATCAACGG+TGG | 0.656087 | 5.2:-7607722 | None:intergenic |
| GCGGTTGAAACGGTGCTCGG+TGG | 0.657002 | 5.2:+7607649 | MS.gene09579:CDS |
| GATTATTTACCAGGTCTCTG+TGG | 0.665083 | 5.2:-7607390 | None:intergenic |
| TCTTTGTTGTTTGAAGCGTG+TGG | 0.669278 | 5.2:+7607556 | MS.gene09579:CDS |
| GATTCCTCAGAATTCATCGA+CGG | 0.685600 | 5.2:-7607943 | None:intergenic |
| TATCGATCCATTGAATACAA+GGG | 0.699979 | 5.2:-7607278 | None:intergenic |
| AACACCGTCGATGAATTCTG+AGG | 0.704407 | 5.2:+7607939 | MS.gene09579:CDS |
| AAACTTGGCTACAAAGACAG+TGG | 0.714204 | 5.2:-7607322 | None:intergenic |
| GGAGATAACTACGTTCACGA+CGG | 0.740228 | 5.2:+7608003 | MS.gene09579:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAGATAAAGATTATTTACC+AGG | - | chr5.2:7607402-7607421 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | + | chr5.2:7607502-7607521 | MS.gene09579:intron | 25.0% |
| CGTTAGAAATGAAAGACATA+AGG | - | chr5.2:7607362-7607381 | None:intergenic | 30.0% | |
| TATCGATCCATTGAATACAA+GGG | - | chr5.2:7607281-7607300 | None:intergenic | 30.0% | |
| CAAAAAGGTTGAGAACTTTG+CGG | - | chr5.2:7608032-7608051 | None:intergenic | 35.0% | |
| TATTACGCCCTTGTATTCAA+TGG | + | chr5.2:7607271-7607290 | MS.gene09579:CDS | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | - | chr5.2:7607282-7607301 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | + | chr5.2:7607327-7607346 | MS.gene09579:CDS | 35.0% |
| ! | TTAGAGTGAAAGTGTAACTG+TGG | - | chr5.2:7607436-7607455 | None:intergenic | 35.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | - | chr5.2:7607680-7607699 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | - | chr5.2:7607325-7607344 | None:intergenic | 40.0% | |
| ACTCACTACAACCCTTTCTA+AGG | - | chr5.2:7607245-7607264 | None:intergenic | 40.0% | |
| GATTATTTACCAGGTCTCTG+TGG | - | chr5.2:7607393-7607412 | None:intergenic | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | - | chr5.2:7607946-7607965 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | - | chr5.2:7607728-7607747 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | - | chr5.2:7607353-7607372 | None:intergenic | 40.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | - | chr5.2:7607239-7607258 | None:intergenic | 40.0% |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | + | chr5.2:7607556-7607575 | MS.gene09579:CDS | 40.0% |
| !!! | TGCTGAAGTTTTGAAGCTTC+CGG | + | chr5.2:7607837-7607856 | MS.gene09579:CDS | 40.0% |
| AAACCCTTACCGGAGTTTCT+CGG | + | chr5.2:7607682-7607701 | MS.gene09579:CDS | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | - | chr5.2:7607688-7607707 | None:intergenic | 45.0% | |
| AAAGTCCGGTTCATGAGTTC+TGG | + | chr5.2:7607793-7607812 | MS.gene09579:CDS | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | + | chr5.2:7607939-7607958 | MS.gene09579:CDS | 45.0% | |
| AACTCATGAACCGGACTTTC+TGG | - | chr5.2:7607792-7607811 | None:intergenic | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | - | chr5.2:7607859-7607878 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | + | chr5.2:7607860-7607879 | MS.gene09579:CDS | 45.0% | |
| GAAACTCCGGTAAGGGTTTA+AGG | - | chr5.2:7607681-7607700 | None:intergenic | 45.0% | |
| GGAGATAACTACGTTCACGA+CGG | + | chr5.2:7608003-7608022 | MS.gene09579:CDS | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | - | chr5.2:7607689-7607708 | None:intergenic | 45.0% | |
| TACCACCAGAACTCATGAAC+CGG | - | chr5.2:7607801-7607820 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | - | chr5.2:7607725-7607744 | None:intergenic | 45.0% | |
| ! | GACTTTTGTGGACAGGAAAC+TGG | + | chr5.2:7607611-7607630 | MS.gene09579:CDS | 45.0% |
| ! | TTCTGAGGAATCTGTGACGA+CGG | + | chr5.2:7607954-7607973 | MS.gene09579:CDS | 45.0% |
| !! | ACCGTTGATGACTCATCTGA+AGG | + | chr5.2:7607724-7607743 | MS.gene09579:CDS | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | - | chr5.2:7607787-7607806 | None:intergenic | 45.0% |
| AAACTGGCACGTGTGTCAAG+CGG | + | chr5.2:7607627-7607646 | MS.gene09579:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | - | chr5.2:7607596-7607615 | None:intergenic | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | - | chr5.2:7607908-7607927 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+CGG | + | chr5.2:7607979-7607998 | MS.gene09579:CDS | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | + | chr5.2:7607580-7607599 | MS.gene09579:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | + | chr5.2:7607294-7607313 | MS.gene09579:CDS | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | + | chr5.2:7607672-7607691 | MS.gene09579:CDS | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | - | chr5.2:7607937-7607956 | None:intergenic | 50.0% | |
| GAGATCCGAACCAGAAAGTC+CGG | + | chr5.2:7607779-7607798 | MS.gene09579:CDS | 50.0% | |
| GCGTCTAAACCGAGAAACTC+CGG | - | chr5.2:7607694-7607713 | None:intergenic | 50.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | + | chr5.2:7607231-7607250 | MS.gene09579:CDS | 50.0% | |
| TACCAGGTCTCTGTGGTGAA+GGG | - | chr5.2:7607386-7607405 | None:intergenic | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | - | chr5.2:7607305-7607324 | None:intergenic | 50.0% | |
| TTACCAGGTCTCTGTGGTGA+AGG | - | chr5.2:7607387-7607406 | None:intergenic | 50.0% | |
| !! | GGACTTTCTGGTTCGGATCT+CGG | - | chr5.2:7607780-7607799 | None:intergenic | 50.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | - | chr5.2:7607882-7607901 | None:intergenic | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | + | chr5.2:7607973-7607992 | MS.gene09579:CDS | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | - | chr5.2:7607587-7607606 | None:intergenic | 55.0% | |
| AGTCCGACAGCACCGTTAAC+GGG | - | chr5.2:7607595-7607614 | None:intergenic | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | + | chr5.2:7607974-7607993 | MS.gene09579:CDS | 55.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | + | chr5.2:7607230-7607249 | MS.gene09579:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | - | chr5.2:7607304-7607323 | None:intergenic | 55.0% | |
| GGTGGTAAACGCAAGCGATC+AGG | + | chr5.2:7607814-7607833 | MS.gene09579:CDS | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | - | chr5.2:7607340-7607359 | None:intergenic | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | - | chr5.2:7607306-7607325 | None:intergenic | 55.0% | |
| GTGTCAAGCGGCGGTTGAAA+CGG | + | chr5.2:7607639-7607658 | MS.gene09579:CDS | 55.0% | |
| GTTGACCAACGGTTTCCGGA+GGG | + | chr5.2:7607900-7607919 | MS.gene09579:CDS | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | + | chr5.2:7607911-7607930 | MS.gene09579:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATCGG+AGG | + | chr5.2:7607982-7608001 | MS.gene09579:CDS | 55.0% | |
| ! | ACGCGTTGACCAACGGTTTC+CGG | + | chr5.2:7607896-7607915 | MS.gene09579:CDS | 55.0% |
| ! | CCACAGAACGCGTTGACCAA+CGG | + | chr5.2:7607889-7607908 | MS.gene09579:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | + | chr5.2:7607604-7607623 | MS.gene09579:CDS | 55.0% |
| ! | GTCCGGTTCATGAGTTCTGG+TGG | + | chr5.2:7607796-7607815 | MS.gene09579:CDS | 55.0% |
| !! | AACCCCGTTAACGGTGCTGT+CGG | + | chr5.2:7607589-7607608 | MS.gene09579:CDS | 55.0% |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | + | chr5.2:7607599-7607618 | MS.gene09579:CDS | 55.0% |
| AAGTCACGTGCAACGACGCG+CGG | + | chr5.2:7607749-7607768 | MS.gene09579:CDS | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | - | chr5.2:7607892-7607911 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | + | chr5.2:7607899-7607918 | MS.gene09579:CDS | 60.0% | |
| GTCCCTTCACCACAGAGACC+TGG | + | chr5.2:7607381-7607400 | MS.gene09579:CDS | 60.0% | |
| GTCCGACAGCACCGTTAACG+GGG | - | chr5.2:7607594-7607613 | None:intergenic | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | + | chr5.2:7607966-7607985 | MS.gene09579:CDS | 60.0% | |
| ! | GTTGAAACGGTGCTCGGTGG+CGG | + | chr5.2:7607652-7607671 | MS.gene09579:CDS | 60.0% |
| CTGGCACGTGTGTCAAGCGG+CGG | + | chr5.2:7607630-7607649 | MS.gene09579:CDS | 65.0% | |
| GCGGCGGTTGAAACGGTGCT+CGG | + | chr5.2:7607646-7607665 | MS.gene09579:CDS | 65.0% | |
| GCGGTTGAAACGGTGCTCGG+TGG | + | chr5.2:7607649-7607668 | MS.gene09579:CDS | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | - | chr5.2:7607933-7607952 | None:intergenic | 65.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | + | chr5.2:7607915-7607934 | MS.gene09579:CDS | 70.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | - | chr5.2:7607918-7607937 | None:intergenic | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | + | chr5.2:7607916-7607935 | MS.gene09579:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7607219 | 7608056 | 7607219 | ID=MS.gene09579 |
| chr5.2 | mRNA | 7607219 | 7608056 | 7607219 | ID=MS.gene09579.t1;Parent=MS.gene09579 |
| chr5.2 | exon | 7607219 | 7607402 | 7607219 | ID=MS.gene09579.t1.exon1;Parent=MS.gene09579.t1 |
| chr5.2 | CDS | 7607219 | 7607402 | 7607219 | ID=cds.MS.gene09579.t1;Parent=MS.gene09579.t1 |
| chr5.2 | exon | 7607545 | 7608056 | 7607545 | ID=MS.gene09579.t1.exon2;Parent=MS.gene09579.t1 |
| chr5.2 | CDS | 7607545 | 7608056 | 7607545 | ID=cds.MS.gene09579.t1;Parent=MS.gene09579.t1 |
| Gene Sequence |
| Protein sequence |
