Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09696.t1 | XP_003611408.1 | 98.4 | 494 | 8 | 0 | 1 | 494 | 50 | 543 | 1.10E-293 | 1018.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09696.t1 | O23553 | 73.7 | 486 | 114 | 5 | 19 | 494 | 67 | 548 | 1.1e-217 | 757.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09696.t1 | G7JYN2 | 98.4 | 494 | 8 | 0 | 1 | 494 | 50 | 543 | 7.7e-294 | 1018.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene09696 | 0.810085 | 1.37E-50 | -1.69E-46 |
| MS.gene055946 | MS.gene09696 | 0.803934 | 2.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09696.t1 | MTR_5g013620 | 98.381 | 494 | 8 | 0 | 1 | 494 | 50 | 543 | 0.0 | 1030 |
| MS.gene09696.t1 | MTR_5g013640 | 93.548 | 496 | 30 | 1 | 1 | 494 | 48 | 543 | 0.0 | 980 |
| MS.gene09696.t1 | MTR_4g099110 | 77.406 | 478 | 101 | 2 | 16 | 486 | 54 | 531 | 0.0 | 795 |
| MS.gene09696.t1 | MTR_6g477780 | 62.865 | 342 | 115 | 2 | 132 | 461 | 10 | 351 | 1.54e-165 | 473 |
| MS.gene09696.t1 | MTR_4g045667 | 49.210 | 443 | 208 | 4 | 30 | 458 | 3 | 442 | 1.12e-156 | 455 |
| MS.gene09696.t1 | MTR_2g089030 | 49.771 | 436 | 202 | 4 | 37 | 458 | 83 | 515 | 1.30e-149 | 440 |
| MS.gene09696.t1 | MTR_8g099775 | 45.417 | 480 | 237 | 8 | 32 | 494 | 67 | 538 | 9.58e-141 | 416 |
| MS.gene09696.t1 | MTR_7g077410 | 46.292 | 445 | 222 | 6 | 35 | 466 | 260 | 700 | 3.67e-124 | 378 |
| MS.gene09696.t1 | MTR_2g020240 | 39.636 | 439 | 253 | 5 | 26 | 459 | 71 | 502 | 1.02e-106 | 328 |
| MS.gene09696.t1 | MTR_5g026210 | 38.013 | 463 | 269 | 8 | 10 | 461 | 189 | 644 | 4.84e-104 | 325 |
| MS.gene09696.t1 | MTR_2g020240 | 38.753 | 369 | 217 | 3 | 94 | 458 | 3 | 366 | 4.86e-90 | 281 |
| MS.gene09696.t1 | MTR_5g026210 | 40.741 | 324 | 184 | 6 | 10 | 332 | 189 | 505 | 1.64e-80 | 259 |
| MS.gene09696.t1 | MTR_5g026210 | 41.455 | 275 | 157 | 4 | 10 | 283 | 189 | 460 | 2.10e-68 | 226 |
| MS.gene09696.t1 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 40 | 132 | 106 | 198 | 4.81e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09696.t1 | AT4G17090 | 73.663 | 486 | 114 | 5 | 19 | 494 | 67 | 548 | 0.0 | 764 |
| MS.gene09696.t1 | AT3G23920 | 65.138 | 436 | 138 | 2 | 40 | 461 | 106 | 541 | 0.0 | 610 |
| MS.gene09696.t1 | AT4G15210 | 47.534 | 446 | 216 | 5 | 28 | 458 | 2 | 444 | 7.88e-150 | 437 |
| MS.gene09696.t1 | AT4G15210 | 50.750 | 400 | 192 | 4 | 28 | 425 | 2 | 398 | 1.89e-147 | 428 |
| MS.gene09696.t1 | AT2G32290 | 47.191 | 445 | 219 | 5 | 27 | 458 | 65 | 506 | 2.05e-141 | 419 |
| MS.gene09696.t1 | AT4G00490 | 48.843 | 432 | 204 | 6 | 40 | 458 | 95 | 522 | 2.90e-139 | 412 |
| MS.gene09696.t1 | AT4G15210 | 48.985 | 394 | 184 | 4 | 79 | 458 | 1 | 391 | 3.85e-139 | 408 |
| MS.gene09696.t1 | AT4G15210 | 48.985 | 394 | 184 | 4 | 79 | 458 | 1 | 391 | 3.85e-139 | 408 |
| MS.gene09696.t1 | AT5G55700 | 43.964 | 439 | 227 | 5 | 39 | 459 | 91 | 528 | 6.64e-131 | 390 |
| MS.gene09696.t1 | AT2G45880 | 46.387 | 429 | 213 | 6 | 40 | 455 | 248 | 672 | 1.88e-122 | 374 |
| MS.gene09696.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 247 | 682 | 2.31e-100 | 316 |
| MS.gene09696.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 245 | 680 | 2.63e-100 | 316 |
| MS.gene09696.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 261 | 696 | 4.35e-100 | 316 |
| MS.gene09696.t1 | AT5G55700 | 44.954 | 327 | 167 | 3 | 146 | 459 | 39 | 365 | 2.16e-98 | 301 |
| MS.gene09696.t1 | AT5G18670 | 37.939 | 427 | 247 | 4 | 40 | 459 | 87 | 502 | 4.68e-90 | 285 |
Find 123 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGATTTACAGATTATT+TGG | 0.109679 | 5.2:-5613094 | MS.gene09696:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.2:+5611756 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.2:+5612601 | None:intergenic |
| ATGGTCCAATGAAGTATAAT+TGG | 0.253077 | 5.2:-5613549 | MS.gene09696:CDS |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5.2:+5611795 | None:intergenic |
| TTGGTTTACACAGACAAATT+AGG | 0.267790 | 5.2:-5613219 | MS.gene09696:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.2:-5612586 | MS.gene09696:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.2:-5613581 | MS.gene09696:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5.2:-5611405 | MS.gene09696:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.2:-5611883 | MS.gene09696:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.2:-5611922 | MS.gene09696:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5.2:-5611299 | MS.gene09696:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5.2:+5612574 | None:intergenic |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5.2:+5611782 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5.2:-5612592 | MS.gene09696:CDS |
| GCTTCCCAATTATACTTCAT+TGG | 0.343253 | 5.2:+5613544 | None:intergenic |
| GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5.2:-5611991 | MS.gene09696:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.2:-5611864 | MS.gene09696:CDS |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5.2:-5613777 | MS.gene09696:CDS |
| TGGTTTACACAGACAAATTA+GGG | 0.354994 | 5.2:-5613218 | MS.gene09696:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5.2:-5613444 | MS.gene09696:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.2:+5611658 | None:intergenic |
| ACAAGTGGACCTCATGATTC+TGG | 0.369913 | 5.2:-5611952 | MS.gene09696:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5.2:-5613635 | MS.gene09696:CDS |
| GATAGATTTACAGATTATTT+GGG | 0.377086 | 5.2:-5613093 | MS.gene09696:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5.2:+5613679 | None:intergenic |
| CATCCCAGTGAGATATATTC+AGG | 0.390835 | 5.2:+5613186 | None:intergenic |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.2:-5611484 | MS.gene09696:CDS |
| CATATCTAAGAATAAATAAG+AGG | 0.406737 | 5.2:-5611426 | MS.gene09696:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.2:-5611756 | MS.gene09696:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5.2:-5611331 | MS.gene09696:CDS |
| AAGTGGGACTAGGTCCTTGT+GGG | 0.419249 | 5.2:-5612645 | MS.gene09696:CDS |
| CTGATTTCTTCCATCACCCA+TGG | 0.422552 | 5.2:+5613255 | None:intergenic |
| CAGGAAGTTCAAGTGGGACT+AGG | 0.426275 | 5.2:-5612655 | MS.gene09696:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5.2:-5613145 | MS.gene09696:CDS |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.429269 | 5.2:-5613610 | MS.gene09696:CDS |
| GGAGAATGATGTTATAATTG+AGG | 0.440317 | 5.2:-5611278 | MS.gene09696:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5.2:+5613153 | None:intergenic |
| TATATTGAATTTCACATGCA+TGG | 0.449253 | 5.2:-5611626 | MS.gene09696:CDS |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.2:+5612602 | None:intergenic |
| CATGGGTGATGGAAGAAATC+AGG | 0.453663 | 5.2:-5613254 | MS.gene09696:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.2:-5611766 | MS.gene09696:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5.2:-5611313 | MS.gene09696:CDS |
| AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5.2:-5611990 | MS.gene09696:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5.2:-5613272 | MS.gene09696:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.2:+5612610 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5.2:-5611392 | MS.gene09696:CDS |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.467245 | 5.2:-5613619 | MS.gene09696:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.470424 | 5.2:+5612557 | None:intergenic |
| TGGTCCAATGAAGTATAATT+GGG | 0.473267 | 5.2:-5613548 | MS.gene09696:CDS |
| TTTCACATGCATGGAAATGA+AGG | 0.474406 | 5.2:-5611617 | MS.gene09696:CDS |
| GCGGAAGCTTCTCATGTAAT+CGG | 0.475464 | 5.2:+5613116 | None:intergenic |
| TTGTCTGTGTAAACCAACTC+AGG | 0.475976 | 5.2:+5613225 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.2:-5613587 | MS.gene09696:CDS |
| TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5.2:-5612000 | MS.gene09696:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5.2:-5611523 | MS.gene09696:CDS |
| AAATCCTGAATATATCTCAC+TGG | 0.483131 | 5.2:-5613190 | MS.gene09696:CDS |
| TCCATCACCCATGGAGGTAG+AGG | 0.485439 | 5.2:+5613264 | None:intergenic |
| ACAGTATATGAGATCATCCT+TGG | 0.486046 | 5.2:-5612013 | MS.gene09696:intron |
| ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5.2:+5611562 | None:intergenic |
| TCCTCTACCTCCATGGGTGA+TGG | 0.488299 | 5.2:-5613265 | MS.gene09696:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.2:-5612603 | MS.gene09696:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5.2:-5611572 | MS.gene09696:CDS |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5.2:-5611402 | MS.gene09696:CDS |
| TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5.2:+5611996 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5.2:-5613679 | MS.gene09696:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5.2:-5611415 | MS.gene09696:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.2:-5613588 | MS.gene09696:CDS |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5.2:-5613776 | MS.gene09696:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.2:-5613457 | MS.gene09696:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5.2:-5611416 | MS.gene09696:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.2:-5613521 | MS.gene09696:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5.2:-5611367 | MS.gene09696:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.2:-5613586 | MS.gene09696:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5.2:-5613162 | MS.gene09696:CDS |
| TAGCATTCCTCTACCTCCAT+GGG | 0.534553 | 5.2:-5613271 | MS.gene09696:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.2:-5612610 | MS.gene09696:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5.2:-5613680 | MS.gene09696:CDS |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5.2:-5611354 | MS.gene09696:CDS |
| AGTGAGGATGGCAACAAAGA+TGG | 0.542830 | 5.2:-5611542 | MS.gene09696:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5.2:+5613132 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5.2:-5613602 | MS.gene09696:CDS |
| AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5.2:-5613238 | MS.gene09696:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.2:+5611851 | None:intergenic |
| GGGCAATTGGGAAGAAAGAG+TGG | 0.553037 | 5.2:-5611978 | MS.gene09696:CDS |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5.2:-5611793 | MS.gene09696:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.2:-5611688 | MS.gene09696:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.2:-5613591 | MS.gene09696:CDS |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5.2:-5611577 | MS.gene09696:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5.2:-5611364 | MS.gene09696:CDS |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5.2:-5611330 | MS.gene09696:CDS |
| AGGATGGCAACAAAGATGGC+AGG | 0.578781 | 5.2:-5611538 | MS.gene09696:CDS |
| TCATTTGCAGGAAGTTCAAG+TGG | 0.580508 | 5.2:-5612662 | MS.gene09696:intron |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.2:-5611652 | MS.gene09696:CDS |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5.2:-5611967 | MS.gene09696:CDS |
| CATGCAACTGAACTAACTGC+AGG | 0.595551 | 5.2:-5611715 | MS.gene09696:CDS |
| ATTGGTTAATCAAGTGAGGA+TGG | 0.595555 | 5.2:-5611554 | MS.gene09696:CDS |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5.2:-5613716 | MS.gene09696:CDS |
| AATCCTGAATATATCTCACT+GGG | 0.599678 | 5.2:-5613189 | MS.gene09696:CDS |
| GGCAATTGGGAAGAAAGAGT+GGG | 0.609694 | 5.2:-5611977 | MS.gene09696:CDS |
| CATTTGCAGGAAGTTCAAGT+GGG | 0.616706 | 5.2:-5612661 | MS.gene09696:intron |
| CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5.2:-5611999 | MS.gene09696:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.2:-5611838 | MS.gene09696:CDS |
| TGTCTGTGTAAACCAACTCA+GGG | 0.620140 | 5.2:+5613226 | None:intergenic |
| CTGCAGGTTACTATAACACA+AGG | 0.621880 | 5.2:-5611699 | MS.gene09696:CDS |
| CAAGTGGGACTAGGTCCTTG+TGG | 0.627114 | 5.2:-5612646 | MS.gene09696:CDS |
| GGATATCTCAGCTCCCCACA+AGG | 0.629732 | 5.2:+5612631 | None:intergenic |
| AATAATCTGTAAATCTATCG+CGG | 0.635987 | 5.2:+5613097 | None:intergenic |
| AGTGGGACTAGGTCCTTGTG+GGG | 0.637417 | 5.2:-5612644 | MS.gene09696:CDS |
| AAGGATTGGTTAATCAAGTG+AGG | 0.645377 | 5.2:-5611558 | MS.gene09696:CDS |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5.2:+5611583 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.2:+5613697 | None:intergenic |
| ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5.2:-5611998 | MS.gene09696:CDS |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5.2:-5613676 | MS.gene09696:CDS |
| TTGTATTGACCAGAATCATG+AGG | 0.670196 | 5.2:+5611943 | None:intergenic |
| ATTTCTTCCATCACCCATGG+AGG | 0.672048 | 5.2:+5613258 | None:intergenic |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5.2:-5611535 | MS.gene09696:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5.2:+5613722 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.689657 | 5.2:-5611929 | MS.gene09696:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5.2:-5612563 | MS.gene09696:intron |
| TTTACACAGACAAATTAGGG+AGG | 0.692025 | 5.2:-5613215 | MS.gene09696:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5.2:-5613689 | MS.gene09696:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.730495 | 5.2:-5611976 | MS.gene09696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCTATTTTTATTCAATT+AGG | + | chr5.2:5612206-5612225 | None:intergenic | 10.0% |
| !! | TAATAATTTCAAATATGACA+AGG | - | chr5.2:5612932-5612951 | MS.gene09696:intron | 15.0% |
| !!! | AATTCAATTTTTCCATATTA+AGG | - | chr5.2:5612250-5612269 | MS.gene09696:intron | 15.0% |
| !!! | ATAAAAATCTAAGACTAATT+TGG | - | chr5.2:5611771-5611790 | MS.gene09696:CDS | 15.0% |
| !!! | ATCTAACACTAATATTATTT+TGG | + | chr5.2:5612574-5612593 | None:intergenic | 15.0% |
| !!! | TAGTCTTAGATTTTTATTTT+TGG | + | chr5.2:5611768-5611787 | None:intergenic | 15.0% |
| !!! | TTAAGATATTTTGCAATTAA+AGG | + | chr5.2:5612798-5612817 | None:intergenic | 15.0% |
| !! | ACATTTGTTCAAAACTTTAA+CGG | - | chr5.2:5612112-5612131 | MS.gene09696:intron | 20.0% |
| !! | CATATCTAAGAATAAATAAG+AGG | - | chr5.2:5613655-5613674 | MS.gene09696:CDS | 20.0% |
| !! | GATAGATTTACAGATTATTT+GGG | - | chr5.2:5611988-5612007 | MS.gene09696:CDS | 20.0% |
| !!! | AGATATATTTTGTTACAACT+GGG | - | chr5.2:5612590-5612609 | MS.gene09696:CDS | 20.0% |
| !!! | GAGTTCAAAGAATATTTTTT+TGG | - | chr5.2:5612826-5612845 | MS.gene09696:intron | 20.0% |
| !!! | TAGATATATTTTGTTACAAC+TGG | - | chr5.2:5612589-5612608 | MS.gene09696:CDS | 20.0% |
| ! | AATAATCTGTAAATCTATCG+CGG | + | chr5.2:5611987-5612006 | None:intergenic | 25.0% |
| ! | ACTAACTATCATCCTTAATA+TGG | + | chr5.2:5612265-5612284 | None:intergenic | 25.0% |
| ! | ATTTGTTCAAAACTTTAACG+GGG | - | chr5.2:5612114-5612133 | MS.gene09696:intron | 25.0% |
| ! | CATTTGTTCAAAACTTTAAC+GGG | - | chr5.2:5612113-5612132 | MS.gene09696:intron | 25.0% |
| ! | CGATAGATTTACAGATTATT+TGG | - | chr5.2:5611987-5612006 | MS.gene09696:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | chr5.2:5611686-5611705 | MS.gene09696:CDS | 25.0% |
| ! | TATATTGAATTTCACATGCA+TGG | - | chr5.2:5613455-5613474 | MS.gene09696:CDS | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | - | chr5.2:5611305-5611324 | MS.gene09696:CDS | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | - | chr5.2:5613782-5613801 | MS.gene09696:CDS | 25.0% |
| !! | GTTATAAGAGGAATACTTTT+TGG | - | chr5.2:5612283-5612302 | MS.gene09696:intron | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | - | chr5.2:5612025-5612044 | MS.gene09696:intron | 25.0% |
| !! | TTATCTAAGACATTACGTTA+AGG | + | chr5.2:5612180-5612199 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGAACAAATGTG+TGG | + | chr5.2:5612111-5612130 | None:intergenic | 25.0% |
| AAATCCTGAATATATCTCAC+TGG | - | chr5.2:5611891-5611910 | MS.gene09696:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | - | chr5.2:5613665-5613684 | MS.gene09696:CDS | 30.0% | |
| AATCCTGAATATATCTCACT+GGG | - | chr5.2:5611892-5611911 | MS.gene09696:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.2:5613597-5613616 | MS.gene09696:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | - | chr5.2:5613666-5613685 | MS.gene09696:CDS | 30.0% | |
| ATGAGCATGAATTTCTACTT+CGG | + | chr5.2:5612157-5612176 | None:intergenic | 30.0% | |
| ATGGTCCAATGAAGTATAAT+TGG | - | chr5.2:5611532-5611551 | MS.gene09696:CDS | 30.0% | |
| CTGTAAAGAAAGACAAGAAA+TGG | - | chr5.2:5611304-5611323 | MS.gene09696:CDS | 30.0% | |
| GGAGAATGATGTTATAATTG+AGG | - | chr5.2:5613803-5613822 | MS.gene09696:CDS | 30.0% | |
| GGATGATAGTTAGTTATAAG+AGG | - | chr5.2:5612271-5612290 | MS.gene09696:intron | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.2:5613393-5613412 | MS.gene09696:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5.2:5613152-5613171 | MS.gene09696:CDS | 30.0% | |
| TCACATTTAAGAGCCTAAAT+TGG | + | chr5.2:5611702-5611721 | None:intergenic | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | - | chr5.2:5613689-5613708 | MS.gene09696:CDS | 30.0% | |
| TGGTCCAATGAAGTATAATT+GGG | - | chr5.2:5611533-5611552 | MS.gene09696:CDS | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | - | chr5.2:5611863-5611882 | MS.gene09696:CDS | 30.0% | |
| TTATGACCAAATTCATTTGC+AGG | - | chr5.2:5612407-5612426 | MS.gene09696:intron | 30.0% | |
| TTGGTTTACACAGACAAATT+AGG | - | chr5.2:5611862-5611881 | MS.gene09696:CDS | 30.0% | |
| ! | AAAAGCATATTCCAAACAAG+TGG | - | chr5.2:5613288-5613307 | MS.gene09696:intron | 30.0% |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5.2:5611612-5611631 | MS.gene09696:CDS | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | - | chr5.2:5613184-5613203 | MS.gene09696:CDS | 30.0% |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | - | chr5.2:5613177-5613196 | MS.gene09696:CDS | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | + | chr5.2:5613289-5613308 | None:intergenic | 30.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5.2:5613315-5613334 | MS.gene09696:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5.2:5613159-5613178 | MS.gene09696:CDS | 35.0% | |
| ACAGTATATGAGATCATCCT+TGG | - | chr5.2:5613068-5613087 | MS.gene09696:intron | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5.2:5613522-5613541 | None:intergenic | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5.2:5612518-5612537 | MS.gene09696:intron | 35.0% | |
| ATAGTTTCACTCCACTTGTT+TGG | + | chr5.2:5613302-5613321 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.2:5613217-5613236 | MS.gene09696:CDS | 35.0% | |
| ATTGGTTAATCAAGTGAGGA+TGG | - | chr5.2:5613527-5613546 | MS.gene09696:CDS | 35.0% | |
| CATTTAAGAGCCTAAATTGG+TGG | + | chr5.2:5611699-5611718 | None:intergenic | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5.2:5613325-5613344 | MS.gene09696:intron | 35.0% | |
| GAACTTCCTGCAAATGAATT+TGG | + | chr5.2:5612416-5612435 | None:intergenic | 35.0% | |
| GCTTCCCAATTATACTTCAT+TGG | + | chr5.2:5611540-5611559 | None:intergenic | 35.0% | |
| GGACACACAAAAAAGTTGAA+AGG | + | chr5.2:5612727-5612746 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5.2:5611573-5611592 | MS.gene09696:CDS | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5.2:5613509-5613528 | MS.gene09696:CDS | 35.0% | |
| TACCGAGTAATTTCGATACT+TGG | - | chr5.2:5612049-5612068 | MS.gene09696:intron | 35.0% | |
| TATGGGACTGATCTTTATGT+TGG | - | chr5.2:5613768-5613787 | MS.gene09696:CDS | 35.0% | |
| TCCATTTGAGCACAACAATT+AGG | + | chr5.2:5612748-5612767 | None:intergenic | 35.0% | |
| TCCTAATTGTTGTGCTCAAA+TGG | - | chr5.2:5612744-5612763 | MS.gene09696:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5.2:5613171-5613190 | None:intergenic | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | - | chr5.2:5611866-5611885 | MS.gene09696:CDS | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5.2:5613464-5613483 | MS.gene09696:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.2:5613426-5613445 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5.2:5612527-5612546 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.2:5611446-5611465 | MS.gene09696:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.2:5611615-5611634 | MS.gene09696:CDS | 35.0% |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.2:5613328-5613347 | None:intergenic | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | - | chr5.2:5613751-5613770 | MS.gene09696:CDS | 35.0% |
| ! | TTGTATTGACCAGAATCATG+AGG | + | chr5.2:5613141-5613160 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.2:5613714-5613733 | MS.gene09696:CDS | 35.0% |
| !! | AAGGATTGGTTAATCAAGTG+AGG | - | chr5.2:5613523-5613542 | MS.gene09696:CDS | 35.0% |
| !! | AGCCAAGTATCGAAATTACT+CGG | + | chr5.2:5612054-5612073 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.2:5613243-5613262 | MS.gene09696:CDS | 35.0% |
| AATGGCAACATCACAAACAC+CGG | + | chr5.2:5611387-5611406 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.2:5612495-5612514 | MS.gene09696:intron | 40.0% | |
| CATCCCAGTGAGATATATTC+AGG | + | chr5.2:5611898-5611917 | None:intergenic | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.2:5612510-5612529 | None:intergenic | 40.0% | |
| CATTTGCAGGAAGTTCAAGT+GGG | - | chr5.2:5612420-5612439 | MS.gene09696:intron | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5.2:5611402-5611421 | MS.gene09696:CDS | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5.2:5613382-5613401 | MS.gene09696:intron | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | - | chr5.2:5613504-5613523 | MS.gene09696:CDS | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5.2:5613429-5613448 | MS.gene09696:intron | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | chr5.2:5613198-5613217 | MS.gene09696:CDS | 40.0% | |
| GGTGAACAATTAGCATCACA+AGG | + | chr5.2:5613501-5613520 | None:intergenic | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.2:5613233-5613252 | None:intergenic | 40.0% | |
| TCATTTGCAGGAAGTTCAAG+TGG | - | chr5.2:5612419-5612438 | MS.gene09696:intron | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.2:5612482-5612501 | None:intergenic | 40.0% | |
| TGTCTGTGTAAACCAACTCA+GGG | + | chr5.2:5611858-5611877 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5.2:5611392-5611411 | MS.gene09696:CDS | 40.0% | |
| TTAACGGGGCTATATATCGT+CGG | - | chr5.2:5612128-5612147 | MS.gene09696:intron | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.2:5612483-5612502 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACCAACTC+AGG | + | chr5.2:5611859-5611878 | None:intergenic | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.2:5611490-5611509 | MS.gene09696:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.2:5611494-5611513 | MS.gene09696:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.2:5611624-5611643 | MS.gene09696:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | - | chr5.2:5613750-5613769 | MS.gene09696:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.2:5611513-5611532 | MS.gene09696:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.2:5611560-5611579 | MS.gene09696:CDS | 40.0% |
| !! | GGTCAAGTTTTGTCTACAAG+TGG | - | chr5.2:5613618-5613637 | MS.gene09696:CDS | 40.0% |
| !! | GTTTTGAACAAATGTGTGGC+TGG | + | chr5.2:5612107-5612126 | None:intergenic | 40.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5.2:5611365-5611384 | MS.gene09696:CDS | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | - | chr5.2:5613727-5613746 | MS.gene09696:CDS | 40.0% |
| AAGAAAGAGTGGGGAACAAG+TGG | - | chr5.2:5613114-5613133 | MS.gene09696:CDS | 45.0% | |
| AATCAGGAAGAACCCTGAGT+TGG | - | chr5.2:5611843-5611862 | MS.gene09696:CDS | 45.0% | |
| ACAAGTGGACCTCATGATTC+TGG | - | chr5.2:5613129-5613148 | MS.gene09696:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5.2:5612478-5612497 | MS.gene09696:intron | 45.0% | |
| AGTGAGGATGGCAACAAAGA+TGG | - | chr5.2:5613539-5613558 | MS.gene09696:CDS | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5.2:5611809-5611828 | MS.gene09696:CDS | 45.0% | |
| ATTTCTTCCATCACCCATGG+AGG | + | chr5.2:5611826-5611845 | None:intergenic | 45.0% | |
| CATGCAACTGAACTAACTGC+AGG | - | chr5.2:5613366-5613385 | MS.gene09696:intron | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.2:5612474-5612493 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5.2:5612471-5612490 | MS.gene09696:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5.2:5611405-5611424 | None:intergenic | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5.2:5611362-5611381 | None:intergenic | 45.0% | |
| CTGATTTCTTCCATCACCCA+TGG | + | chr5.2:5611829-5611848 | None:intergenic | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5.2:5612489-5612508 | MS.gene09696:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | chr5.2:5613105-5613124 | MS.gene09696:CDS | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5.2:5611401-5611420 | MS.gene09696:CDS | 45.0% | |
| GCGGAAGCTTCTCATGTAAT+CGG | + | chr5.2:5611968-5611987 | None:intergenic | 45.0% | |
| GGCAATTGGGAAGAAAGAGT+GGG | - | chr5.2:5613104-5613123 | MS.gene09696:CDS | 45.0% | |
| GGTTGCTTGAGGGTGATAAT+TGG | - | chr5.2:5613676-5613695 | MS.gene09696:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.2:5613717-5613736 | MS.gene09696:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5.2:5611952-5611971 | None:intergenic | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5.2:5611810-5611829 | MS.gene09696:CDS | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5.2:5611479-5611498 | MS.gene09696:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | - | chr5.2:5613679-5613698 | MS.gene09696:CDS | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5.2:5611405-5611424 | MS.gene09696:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.2:5611493-5611512 | MS.gene09696:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.2:5611495-5611514 | MS.gene09696:CDS | 45.0% |
| !! | CATGGGTGATGGAAGAAATC+AGG | - | chr5.2:5611827-5611846 | MS.gene09696:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5.2:5611637-5611656 | MS.gene09696:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5.2:5611471-5611490 | MS.gene09696:CDS | 45.0% |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5.2:5611462-5611481 | MS.gene09696:CDS | 45.0% |
| !! | AATCATTAATATAAATTATT+TGG | - | chr5.2:5612633-5612652 | MS.gene09696:CDS | 5.0% |
| AAGCATCAGCAGGGGCAATT+GGG | - | chr5.2:5613091-5613110 | MS.gene09696:CDS | 50.0% | |
| AAGTGGGACTAGGTCCTTGT+GGG | - | chr5.2:5612436-5612455 | MS.gene09696:intron | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5.2:5611936-5611955 | MS.gene09696:CDS | 50.0% | |
| AGGATGGCAACAAAGATGGC+AGG | - | chr5.2:5613543-5613562 | MS.gene09696:CDS | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | - | chr5.2:5613546-5613565 | MS.gene09696:CDS | 50.0% | |
| CAGGAAGTTCAAGTGGGACT+AGG | - | chr5.2:5612426-5612445 | MS.gene09696:intron | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5.2:5611919-5611938 | MS.gene09696:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5.2:5611931-5611950 | None:intergenic | 50.0% | |
| GGGCAATTGGGAAGAAAGAG+TGG | - | chr5.2:5613103-5613122 | MS.gene09696:CDS | 50.0% | |
| !! | ATCCTTGGAAGCATCAGCAG+GGG | - | chr5.2:5613083-5613102 | MS.gene09696:CDS | 50.0% |
| !! | CATCCTTGGAAGCATCAGCA+GGG | - | chr5.2:5613082-5613101 | MS.gene09696:CDS | 50.0% |
| !! | TCATCCTTGGAAGCATCAGC+AGG | - | chr5.2:5613081-5613100 | MS.gene09696:CDS | 50.0% |
| AGTGGGACTAGGTCCTTGTG+GGG | - | chr5.2:5612437-5612456 | MS.gene09696:intron | 55.0% | |
| ATGGCAGGTGGTGAACTTGC+TGG | - | chr5.2:5613558-5613577 | MS.gene09696:CDS | 55.0% | |
| CAAGTGGGACTAGGTCCTTG+TGG | - | chr5.2:5612435-5612454 | MS.gene09696:intron | 55.0% | |
| GGATATCTCAGCTCCCCACA+AGG | + | chr5.2:5612453-5612472 | None:intergenic | 55.0% | |
| TCCATCACCCATGGAGGTAG+AGG | + | chr5.2:5611820-5611839 | None:intergenic | 55.0% | |
| TCCTCTACCTCCATGGGTGA+TGG | - | chr5.2:5611816-5611835 | MS.gene09696:CDS | 55.0% | |
| ! | GAAGCATCAGCAGGGGCAAT+TGG | - | chr5.2:5613090-5613109 | MS.gene09696:CDS | 55.0% |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.2:5611500-5611519 | MS.gene09696:CDS | 55.0% |
| TGCCCCTGCTGATGCTTCCA+AGG | + | chr5.2:5613088-5613107 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 5611264 | 5613839 | 5611264 | ID=MS.gene09696 |
| chr5.2 | mRNA | 5611264 | 5613839 | 5611264 | ID=MS.gene09696.t1;Parent=MS.gene09696 |
| chr5.2 | exon | 5613445 | 5613839 | 5613445 | ID=MS.gene09696.t1.exon1;Parent=MS.gene09696.t1 |
| chr5.2 | CDS | 5613445 | 5613839 | 5613445 | ID=cds.MS.gene09696.t1;Parent=MS.gene09696.t1 |
| chr5.2 | exon | 5613080 | 5613290 | 5613080 | ID=MS.gene09696.t1.exon2;Parent=MS.gene09696.t1 |
| chr5.2 | CDS | 5613080 | 5613290 | 5613080 | ID=cds.MS.gene09696.t1;Parent=MS.gene09696.t1 |
| chr5.2 | exon | 5612564 | 5612674 | 5612564 | ID=MS.gene09696.t1.exon3;Parent=MS.gene09696.t1 |
| chr5.2 | CDS | 5612564 | 5612674 | 5612564 | ID=cds.MS.gene09696.t1;Parent=MS.gene09696.t1 |
| chr5.2 | exon | 5611264 | 5612031 | 5611264 | ID=MS.gene09696.t1.exon4;Parent=MS.gene09696.t1 |
| chr5.2 | CDS | 5611264 | 5612031 | 5611264 | ID=cds.MS.gene09696.t1;Parent=MS.gene09696.t1 |
| Gene Sequence |
| Protein sequence |
