AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09973

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09973.t1 MTR_5g012460 97.550 449 10 1 1 449 1 448 0.0 908
MS.gene09973.t1 MTR_4g070810 54.870 308 132 2 53 356 44 348 3.87e-116 353
MS.gene09973.t1 MTR_5g021050 53.795 303 138 1 54 354 13 315 7.28e-116 348
MS.gene09973.t1 MTR_5g021050 53.795 303 138 1 54 354 13 315 8.87e-116 348
MS.gene09973.t1 MTR_1g022480 55.986 284 123 1 73 356 72 353 4.99e-111 340
MS.gene09973.t1 MTR_1g022480 55.986 284 123 1 73 356 72 353 5.16e-111 340
MS.gene09973.t1 MTR_3g117100 49.847 327 159 2 54 375 44 370 5.77e-111 340
MS.gene09973.t1 MTR_1g022480 55.986 284 123 1 73 356 72 353 7.98e-111 340
MS.gene09973.t1 MTR_3g112150 57.308 260 111 0 93 352 71 330 2.05e-110 337
MS.gene09973.t1 MTR_8g076880 55.435 276 123 0 81 356 45 320 7.81e-109 333
MS.gene09973.t1 MTR_4g070720 45.641 390 201 4 54 440 35 416 3.42e-108 331
MS.gene09973.t1 MTR_3g117090 51.667 300 143 1 56 353 36 335 2.94e-103 318
MS.gene09973.t1 MTR_3g117090 51.495 301 144 1 56 354 36 336 8.84e-103 317
MS.gene09973.t1 MTR_7g056587 50.542 277 137 0 81 357 66 342 9.04e-99 308
MS.gene09973.t1 MTR_7g056587 50.542 277 137 0 81 357 74 350 1.31e-98 308
MS.gene09973.t1 MTR_7g056587 50.542 277 137 0 81 357 74 350 1.74e-98 307
MS.gene09973.t1 MTR_7g056587 50.542 277 137 0 81 357 88 364 2.04e-98 308
MS.gene09973.t1 MTR_1g022480 56.967 244 105 0 113 356 26 269 5.34e-98 304
MS.gene09973.t1 MTR_3g010190 43.642 346 174 4 12 356 19 344 8.79e-93 290
MS.gene09973.t1 MTR_4g070790 45.205 292 156 2 92 379 61 352 4.24e-87 271
MS.gene09973.t1 MTR_8g071000 49.819 277 135 2 81 356 59 332 5.81e-86 275
MS.gene09973.t1 MTR_6g015645 57.353 204 87 0 149 352 6 209 6.57e-86 270
MS.gene09973.t1 MTR_7g056587 53.333 225 105 0 133 357 1 225 1.65e-84 267
MS.gene09973.t1 MTR_4g070780 45.211 261 117 3 92 352 35 269 4.58e-70 228
MS.gene09973.t1 MTR_4g070730 44.681 235 105 2 119 352 54 264 8.68e-61 203
MS.gene09973.t1 MTR_6g034285 91.919 99 8 0 151 249 195 293 6.31e-58 196
MS.gene09973.t1 MTR_3g060670 29.482 251 154 6 75 322 5 235 1.72e-19 89.7
MS.gene09973.t1 MTR_2g027140 28.571 210 142 3 115 322 38 241 4.99e-18 85.1
MS.gene09973.t1 MTR_3g098530 29.515 227 127 5 109 327 63 264 1.29e-17 83.2
MS.gene09973.t1 MTR_8g096180 31.111 225 122 6 109 325 43 242 5.69e-16 77.8
MS.gene09973.t1 MTR_8g096170 31.169 231 114 8 109 325 46 245 7.95e-16 77.4
MS.gene09973.t1 MTR_2g027140 28.646 192 129 3 133 322 1 186 1.80e-14 73.9
MS.gene09973.t1 MTR_3g097350 28.384 229 139 8 116 333 250 464 1.01e-11 67.4
MS.gene09973.t1 MTR_1g022185 28.837 215 127 7 116 325 46 239 2.31e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09973.t1 AT5G47510 53.039 362 149 4 87 448 23 363 1.73e-139 405
MS.gene09973.t1 AT5G47510 53.039 362 149 4 87 448 22 362 1.93e-139 405
MS.gene09973.t1 AT5G47510 56.386 321 132 1 87 399 23 343 3.77e-137 397
MS.gene09973.t1 AT5G47510 52.599 327 134 4 122 448 1 306 8.30e-124 363
MS.gene09973.t1 AT4G36490 54.110 292 132 1 64 353 25 316 5.88e-115 348
MS.gene09973.t1 AT2G21540 54.362 298 130 2 91 385 71 365 1.23e-114 347
MS.gene09973.t1 AT2G21540 54.362 298 130 2 91 385 71 365 1.23e-114 347
MS.gene09973.t1 AT2G21540 57.353 272 113 1 91 362 71 339 1.11e-113 345
MS.gene09973.t1 AT2G21540 57.353 272 113 1 91 362 71 339 1.11e-113 345
MS.gene09973.t1 AT2G21540 57.353 272 113 1 91 362 71 339 1.11e-113 345
MS.gene09973.t1 AT2G21540 57.353 272 113 1 91 362 71 339 1.11e-113 345
MS.gene09973.t1 AT2G18180 50.625 320 147 3 62 372 26 343 1.75e-113 344
MS.gene09973.t1 AT2G18180 50.625 320 147 3 62 372 26 343 2.24e-113 344
MS.gene09973.t1 AT4G39180 50.804 311 148 2 54 362 33 340 1.12e-111 340
MS.gene09973.t1 AT4G39180 50.804 311 148 2 54 362 33 340 1.42e-111 340
MS.gene09973.t1 AT4G39180 50.804 311 148 2 54 362 33 340 1.42e-111 340
MS.gene09973.t1 AT1G75370 54.237 295 132 1 81 375 79 370 1.49e-110 339
MS.gene09973.t1 AT4G39170 54.779 272 123 0 81 352 74 345 8.89e-110 337
MS.gene09973.t1 AT1G19650 48.624 327 160 2 75 401 64 382 1.22e-109 331
MS.gene09973.t1 AT1G75370 54.237 295 132 1 81 375 79 370 1.33e-109 338
MS.gene09973.t1 AT4G39170 55.019 269 121 0 81 349 74 342 1.42e-108 334
MS.gene09973.t1 AT1G19650 48.624 327 160 2 75 401 64 382 5.31e-108 332
MS.gene09973.t1 AT4G34580 51.495 301 143 1 54 351 24 324 1.10e-107 330
MS.gene09973.t1 AT4G34580 51.495 301 143 1 54 351 24 324 1.10e-107 330
MS.gene09973.t1 AT2G21520 51.916 287 134 1 70 352 65 351 1.89e-107 332
MS.gene09973.t1 AT2G21520 51.916 287 134 1 70 352 65 351 1.89e-107 332
MS.gene09973.t1 AT2G21520 51.916 287 134 1 70 352 61 347 2.02e-107 331
MS.gene09973.t1 AT3G24840 46.667 345 176 2 48 384 33 377 2.08e-107 330
MS.gene09973.t1 AT3G24840 46.667 345 176 2 48 384 33 377 2.08e-107 330
MS.gene09973.t1 AT3G24840 46.667 345 176 2 48 384 33 377 2.08e-107 330
MS.gene09973.t1 AT3G24840 46.667 345 176 2 48 384 33 377 2.08e-107 330
MS.gene09973.t1 AT3G24840 49.045 314 157 1 48 358 33 346 2.56e-107 330
MS.gene09973.t1 AT3G24840 49.045 314 157 1 48 358 33 346 2.56e-107 330
MS.gene09973.t1 AT3G24840 49.045 314 157 1 48 358 33 346 2.56e-107 330
MS.gene09973.t1 AT2G16380 52.249 289 136 1 93 379 66 354 3.54e-106 325
MS.gene09973.t1 AT2G16380 52.249 289 136 1 93 379 66 354 3.54e-106 325
MS.gene09973.t1 AT2G18180 51.698 265 119 2 115 372 10 272 1.93e-99 306
MS.gene09973.t1 AT2G18180 51.698 265 119 2 115 372 10 272 4.20e-99 305
MS.gene09973.t1 AT5G56160 48.534 307 154 3 54 356 30 336 2.39e-98 303
MS.gene09973.t1 AT1G19650 49.828 291 138 2 111 401 28 310 2.64e-98 305
MS.gene09973.t1 AT5G56160 48.534 307 154 3 54 356 30 336 6.20e-98 305
MS.gene09973.t1 AT5G56160 48.534 307 154 3 54 356 30 336 6.20e-98 305
MS.gene09973.t1 AT2G18180 53.441 247 106 2 133 372 1 245 4.49e-95 294
MS.gene09973.t1 AT1G55690 47.869 305 153 3 54 352 36 340 2.06e-91 290
MS.gene09973.t1 AT1G55690 47.869 305 153 3 54 352 36 340 2.81e-91 289
MS.gene09973.t1 AT1G55690 47.869 305 153 3 54 352 36 340 2.81e-91 289
MS.gene09973.t1 AT1G55690 47.869 305 153 3 54 352 36 340 2.81e-91 289
MS.gene09973.t1 AT1G55690 47.869 305 153 3 54 352 36 340 2.81e-91 289
MS.gene09973.t1 AT2G16380 51.807 249 118 1 133 379 1 249 4.69e-89 278
MS.gene09973.t1 AT5G47730 28.512 242 158 6 90 322 6 241 6.11e-19 88.2
MS.gene09973.t1 AT5G47730 28.512 242 158 6 90 322 6 241 6.11e-19 88.2
MS.gene09973.t1 AT1G55840 28.571 238 150 5 89 322 20 241 3.81e-18 85.5
MS.gene09973.t1 AT1G55840 29.954 217 142 4 110 322 4 214 5.37e-18 84.7
MS.gene09973.t1 AT5G47730 30.208 192 126 4 133 322 1 186 7.48e-16 78.2
MS.gene09973.t1 AT5G47730 30.208 192 126 4 133 322 1 186 7.48e-16 78.2
MS.gene09973.t1 AT1G01630 29.386 228 122 8 109 325 46 245 2.14e-13 70.5
MS.gene09973.t1 AT1G75170 27.982 218 129 8 116 327 47 242 1.51e-11 65.5
MS.gene09973.t1 AT1G75170 27.982 218 129 8 116 327 47 242 1.51e-11 65.5

Find 81 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCATTTCTAACAATTC+TGG 0.209519 5.2:+4861486 None:intergenic
TCTTATCCGCTCATGAAATT+TGG 0.226089 5.2:-4863271 MS.gene09973:CDS
ATTTGGAAGGAGTAAAAGTT+TGG 0.279082 5.2:-4863254 MS.gene09973:CDS
TTTATTATTAATGCTGGTTC+TGG 0.287893 5.2:-4861995 MS.gene09973:CDS
TCAACAATTTGTTCATCATT+TGG 0.301735 5.2:+4863205 None:intergenic
GATCTTCCTACTACACAAAA+AGG 0.336401 5.2:-4863331 MS.gene09973:CDS
CCTGTGTATATTGAGAGAAT+TGG 0.338897 5.2:-4862584 MS.gene09973:CDS
ATAATTGAGAAACATATCTT+TGG 0.343213 5.2:+4862980 None:intergenic
ATGATTATCATACTCTTCTA+AGG 0.346356 5.2:-4863132 MS.gene09973:intron
TGCATCATCTTCTGGTGTTA+AGG 0.348901 5.2:-4863398 MS.gene09973:CDS
TCCATGAAGATGTACCTTGC+AGG 0.355379 5.2:+4862285 None:intergenic
CTGTCTTCGCCTTTCGCCGT+TGG 0.369283 5.2:+4863454 None:intergenic
AGAAAAGATGCATCATCTTC+TGG 0.370086 5.2:-4863406 MS.gene09973:CDS
AATAGGAGGATGAATTGATT+TGG 0.371367 5.2:+4863366 None:intergenic
TGTTTCTCAATTATCTGAAA+TGG 0.373010 5.2:-4862971 MS.gene09973:CDS
GCATCATCTTCTGGTGTTAA+GGG 0.378251 5.2:-4863397 MS.gene09973:CDS
AGAATTGTTAGAAATGATTC+AGG 0.387877 5.2:-4861484 MS.gene09973:intron
AGATGATTTAAGTATGTGTT+TGG 0.391085 5.2:-4860996 MS.gene09973:CDS
GTATGATAATCATTGTGTTT+AGG 0.394177 5.2:+4863142 None:intergenic
GCCTGCAAGGTACATCTTCA+TGG 0.400385 5.2:-4862286 MS.gene09973:CDS
AAACTCTTTATTATTAATGC+TGG 0.402252 5.2:-4862001 MS.gene09973:CDS
ATAATGATCTGTTACCGTTT+CGG 0.410038 5.2:+4861096 None:intergenic
AGCTTCCACCACAAGTATCT+TGG 0.410693 5.2:-4862432 MS.gene09973:CDS
AAGGAGTAAAAGTTTGGAAA+AGG 0.439103 5.2:-4863248 MS.gene09973:CDS
TCCTCCTATTGAAACGCATT+GGG 0.444721 5.2:-4863353 MS.gene09973:CDS
AGATCCCAATGCGTTTCAAT+AGG 0.448836 5.2:+4863349 None:intergenic
AGTTTGGAAAAGGTTCTAGA+AGG 0.449950 5.2:-4863238 MS.gene09973:CDS
AATTGCACATGTTCTGAGTA+TGG 0.450333 5.2:-4861546 MS.gene09973:CDS
CGCGAAATGCTTTCACGTGA+GGG 0.453780 5.2:-4863175 MS.gene09973:CDS
TCGAGTCGACATGATTCATA+AGG 0.459041 5.2:-4862937 MS.gene09973:intron
GATTGGCTTGAAGCTAGTCT+TGG 0.461154 5.2:-4860911 MS.gene09973:CDS
ATAAGACAACAATGACTTGA+TGG 0.465943 5.2:+4863288 None:intergenic
ATCCTCCTATTGAAACGCAT+TGG 0.466005 5.2:-4863354 MS.gene09973:CDS
CTTCTGGTGTTAAGGGATTG+AGG 0.494321 5.2:-4863390 MS.gene09973:CDS
CTTGATAAGCCTTTCTTGTG+TGG 0.496556 5.2:+4862529 None:intergenic
CTGTGTATATTGAGAGAATT+GGG 0.498675 5.2:-4862583 MS.gene09973:CDS
TGTCATTGAGCTCACCATCT+TGG 0.505312 5.2:+4860752 None:intergenic
ACAAGTATCTTGGATGTCAA+TGG 0.505672 5.2:-4862422 MS.gene09973:CDS
TTGCTACTGTGCGTTCACTT+AGG 0.508717 5.2:+4861939 None:intergenic
AAGTATGTGTTTGGCACTTG+AGG 0.512291 5.2:-4860987 MS.gene09973:CDS
GGCAAATAACCACACAAGAA+AGG 0.513788 5.2:-4862538 MS.gene09973:CDS
TCGCGAAATGCTTTCACGTG+AGG 0.516953 5.2:-4863176 MS.gene09973:CDS
GAGACAACAAGGGCTAGAAC+AGG 0.521228 5.2:-4860965 MS.gene09973:CDS
CTAGAACAGGCTTGTCATGT+AGG 0.524567 5.2:-4860952 MS.gene09973:CDS
CTCCTTCCAAATTTCATGAG+CGG 0.525376 5.2:+4863265 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.526574 5.2:-4861979 MS.gene09973:CDS
TTAGCTGCTAATGAACATGC+AGG 0.545388 5.2:+4862464 None:intergenic
ATGAGTACTCCAACGGCGAA+AGG 0.545746 5.2:-4863463 MS.gene09973:CDS
GGTTGCTTGATGAGTGATCA+AGG 0.549060 5.2:-4861522 MS.gene09973:CDS
TACTATCCTCATGGATACCA+TGG 0.558498 5.2:-4862626 MS.gene09973:CDS
TCCCAATGCGTTTCAATAGG+AGG 0.565630 5.2:+4863352 None:intergenic
CATGCAGACAACGGAAGAGA+TGG 0.568473 5.2:-4861167 MS.gene09973:intron
CTTTGACGTCAAGGTTTCTG+CGG 0.568605 5.2:-4863028 MS.gene09973:intron
ATCCGCTCATGAAATTTGGA+AGG 0.576650 5.2:-4863267 MS.gene09973:CDS
AAATGATGAACAAATTGTTG+AGG 0.576847 5.2:-4863203 MS.gene09973:CDS
AGGATCATTGATGTCCGAAA+CGG 0.582632 5.2:-4861110 MS.gene09973:intron
TGATAATCATTGTGTTTAGG+TGG 0.583255 5.2:+4863145 None:intergenic
CACAACAATGTGGTTTCAGA+AGG 0.586412 5.2:-4861130 MS.gene09973:CDS
GATGTTGTGGAAAGCAGTGA+AGG 0.591263 5.2:-4861966 MS.gene09973:CDS
CAATTATCTGAAATGGCGAA+AGG 0.593477 5.2:-4862964 MS.gene09973:CDS
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 5.2:-4862299 MS.gene09973:CDS
TTACCTCAGTGTGTTGCTAG+AGG 0.609354 5.2:-4861765 MS.gene09973:CDS
TGCCACATTTATCAACTCCA+TGG 0.612313 5.2:+4862609 None:intergenic
CCAATTCTCTCAATATACAC+AGG 0.625976 5.2:+4862584 None:intergenic
TGGCACTTGAGGAGACAACA+AGG 0.626058 5.2:-4860976 MS.gene09973:CDS
TGCACTTCAAGACACCAAGA+TGG 0.631706 5.2:-4860766 MS.gene09973:intron
TAGCTGCTAATGAACATGCA+GGG 0.636345 5.2:+4862465 None:intergenic
TGATGAGTGATCAAGGCCCA+TGG 0.641896 5.2:-4861515 MS.gene09973:CDS
ATTGACATCCAAGATACTTG+TGG 0.642379 5.2:+4862424 None:intergenic
TGATAGATATTAACAAACTG+TGG 0.642658 5.2:-4862559 MS.gene09973:CDS
TGATAGCAGTTATTATCCTG+AGG 0.642954 5.2:-4862250 MS.gene09973:intron
CAGACAACGGAAGAGATGGA+TGG 0.654863 5.2:-4861163 MS.gene09973:CDS
GACATCCAAGATACTTGTGG+TGG 0.658366 5.2:+4862427 None:intergenic
TGTATGAATGAGTACTCCAA+CGG 0.664945 5.2:-4863470 None:intergenic
TACCATGGAGTTGATAAATG+TGG 0.686716 5.2:-4862611 MS.gene09973:CDS
TGCTAGAGGATATTGATCCG+AGG 0.699774 5.2:-4861751 MS.gene09973:intron
GGCACTTGAGGAGACAACAA+GGG 0.705217 5.2:-4860975 MS.gene09973:CDS
TGCACATGTTCTGAGTATGG+AGG 0.721718 5.2:-4861543 MS.gene09973:CDS
TCAACTCCATGGTATCCATG+AGG 0.729821 5.2:+4862620 None:intergenic
TATCCTCTAGCAACACACTG+AGG 0.753762 5.2:+4861762 None:intergenic
TGCGTGCGAACACAACAATG+TGG 0.799380 5.2:-4861140 MS.gene09973:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTTTTAAAAAGTTA+TGG + chr5.2:4861302-4861321 None:intergenic 10.0%
!!! ATATGAAATTTTTATTTGGT+TGG - chr5.2:4861246-4861265 MS.gene09973:intron 15.0%
!!! TAATCAATTAAATTTGTTCT+TGG + chr5.2:4862843-4862862 None:intergenic 15.0%
!! AAACTCTTTATTATTAATGC+TGG - chr5.2:4862117-4862136 MS.gene09973:intron 20.0%
!! AAATCTAAGAGTTTCATTAA+AGG + chr5.2:4862509-4862528 None:intergenic 20.0%
!! AACAAATTAAAACTCAACTA+TGG + chr5.2:4861403-4861422 None:intergenic 20.0%
!! ATAATTGAGAAACATATCTT+TGG + chr5.2:4861141-4861160 None:intergenic 20.0%
!! ATATGTTACTACTTACAATT+AGG - chr5.2:4862465-4862484 MS.gene09973:CDS 20.0%
!! GTAACATATTCATCAAAAAA+AGG + chr5.2:4862454-4862473 None:intergenic 20.0%
!! GTGTTTCATAATTTACTATA+TGG - chr5.2:4861743-4861762 MS.gene09973:intron 20.0%
!! TAGCATTACAAAAAATTGAT+TGG - chr5.2:4863190-4863209 MS.gene09973:CDS 20.0%
!!! AATTTTAATCGACTTCAATA+GGG + chr5.2:4862071-4862090 None:intergenic 20.0%
! AAAATTATTCATGCAGACAA+CGG - chr5.2:4862942-4862961 MS.gene09973:CDS 25.0%
! AAATGATGAACAAATTGTTG+AGG - chr5.2:4860915-4860934 MS.gene09973:CDS 25.0%
! AATTTCTCTATGTTAAACCT+AGG - chr5.2:4863260-4863279 MS.gene09973:CDS 25.0%
! AGAATTGTTAGAAATGATTC+AGG - chr5.2:4862634-4862653 MS.gene09973:CDS 25.0%
! AGATGATTTAAGTATGTGTT+TGG - chr5.2:4863122-4863141 MS.gene09973:intron 25.0%
! ATGATTATCATACTCTTCTA+AGG - chr5.2:4860986-4861005 MS.gene09973:CDS 25.0%
! ATTTCTCTATGTTAAACCTA+GGG - chr5.2:4863261-4863280 MS.gene09973:CDS 25.0%
! CATTTAACTATGTTTAAGCA+AGG + chr5.2:4863082-4863101 None:intergenic 25.0%
! GTATGATAATCATTGTGTTT+AGG + chr5.2:4860979-4860998 None:intergenic 25.0%
! TATAGTTGTCACGAAAAAAT+GGG - chr5.2:4862745-4862764 MS.gene09973:intron 25.0%
! TGAATCATTTCTAACAATTC+TGG + chr5.2:4862635-4862654 None:intergenic 25.0%
! TGATAGATATTAACAAACTG+TGG - chr5.2:4861559-4861578 MS.gene09973:CDS 25.0%
! TGTTTCTCAATTATCTGAAA+TGG - chr5.2:4861147-4861166 MS.gene09973:CDS 25.0%
! TTTATTTGTCTTGTAGAAAC+AGG - chr5.2:4862715-4862734 MS.gene09973:intron 25.0%
!! TCAACAATTTGTTCATCATT+TGG + chr5.2:4860916-4860935 None:intergenic 25.0%
!! TCTGTTCTAAATCATGTTTA+TGG - chr5.2:4861044-4861063 MS.gene09973:intron 25.0%
!! TTTTGATGTCATTCATTTTC+TGG - chr5.2:4861422-4861441 MS.gene09973:intron 25.0%
!!! ATACAAAAGTCATTTTACCT+CGG + chr5.2:4862387-4862406 None:intergenic 25.0%
!!! GAATTTTAATCGACTTCAAT+AGG + chr5.2:4862072-4862091 None:intergenic 25.0%
!!! TATCAAAGATTTTTTCACCT+CGG - chr5.2:4862226-4862245 MS.gene09973:intron 25.0%
!!! TGTTTCTTTTTTTCTCTTTC+AGG - chr5.2:4863428-4863447 MS.gene09973:CDS 25.0%
!!! TTTATTATTAATGCTGGTTC+TGG - chr5.2:4862123-4862142 MS.gene09973:intron 25.0%
AAAGGTAGAACATCACAAAA+AGG + chr5.2:4862491-4862510 None:intergenic 30.0%
AAGGAGTAAAAGTTTGGAAA+AGG - chr5.2:4860870-4860889 MS.gene09973:intron 30.0%
AATAGGAGGATGAATTGATT+TGG + chr5.2:4860755-4860774 None:intergenic 30.0%
ACCTATGTCCTTATTATGTA+GGG - chr5.2:4863054-4863073 MS.gene09973:intron 30.0%
ATAAGACAACAATGACTTGA+TGG + chr5.2:4860833-4860852 None:intergenic 30.0%
ATAATGATCTGTTACCGTTT+CGG + chr5.2:4863025-4863044 None:intergenic 30.0%
ATTTGGAAGGAGTAAAAGTT+TGG - chr5.2:4860864-4860883 MS.gene09973:intron 30.0%
CAGTAGCAAAAATTCAAGTA+CGG - chr5.2:4862193-4862212 MS.gene09973:intron 30.0%
CATAACCAAATCAGCATTAT+TGG + chr5.2:4861770-4861789 None:intergenic 30.0%
CTAAATCATGTTTATGGACT+TGG - chr5.2:4861050-4861069 MS.gene09973:intron 30.0%
CTATAGTTGTCACGAAAAAA+TGG - chr5.2:4862744-4862763 MS.gene09973:intron 30.0%
CTGTGTATATTGAGAGAATT+GGG - chr5.2:4861535-4861554 MS.gene09973:CDS 30.0%
GCAAATTACCCTAAACATAT+TGG + chr5.2:4863290-4863309 None:intergenic 30.0%
GCTTAAACATAGTTAAATGC+AGG - chr5.2:4863083-4863102 MS.gene09973:intron 30.0%
GTGAAAAAATACTATCCTCA+TGG - chr5.2:4861483-4861502 MS.gene09973:intron 30.0%
GTTGCTACTGAAAAAAATCA+CGG + chr5.2:4862417-4862436 None:intergenic 30.0%
TACCTATGTCCTTATTATGT+AGG - chr5.2:4863053-4863072 MS.gene09973:intron 30.0%
TAGGGAATCCAATATGTTTA+GGG - chr5.2:4863279-4863298 MS.gene09973:CDS 30.0%
TGATAATCATTGTGTTTAGG+TGG + chr5.2:4860976-4860995 None:intergenic 30.0%
TTATTCAACTACCATGCTTT+CGG - chr5.2:4862817-4862836 MS.gene09973:intron 30.0%
! AACAATTCTGGATTTTTCCA+TGG + chr5.2:4862623-4862642 None:intergenic 30.0%
! ACAATTCTGGATTTTTCCAT+GGG + chr5.2:4862622-4862641 None:intergenic 30.0%
! ATAAGGTGAATTGACTCAAA+AGG - chr5.2:4861198-4861217 MS.gene09973:intron 30.0%
! TTCTTTCCTTTTTGTGTAGT+AGG + chr5.2:4860796-4860815 None:intergenic 30.0%
!! AGTAACTTGCCAACATTTTT+GGG - chr5.2:4862545-4862564 MS.gene09973:CDS 30.0%
!! TCATTTTCTGGTACATAATC+AGG - chr5.2:4861434-4861453 MS.gene09973:intron 30.0%
AAAACCTGAAACAGGAATGT+TGG + chr5.2:4862324-4862343 None:intergenic 35.0%
ACAAGTATCTTGGATGTCAA+TGG - chr5.2:4861696-4861715 MS.gene09973:intron 35.0%
AGAAAAGATGCATCATCTTC+TGG - chr5.2:4860712-4860731 MS.gene09973:intron 35.0%
AGGTTTGTCAATATCAAGAG+CGG - chr5.2:4862654-4862673 MS.gene09973:CDS 35.0%
ATTGACATCCAAGATACTTG+TGG + chr5.2:4861697-4861716 None:intergenic 35.0%
CAATTACCACCCAAAAATGT+TGG + chr5.2:4862557-4862576 None:intergenic 35.0%
CCAATTCTCTCAATATACAC+AGG + chr5.2:4861537-4861556 None:intergenic 35.0%
CCTGTGTATATTGAGAGAAT+TGG - chr5.2:4861534-4861553 MS.gene09973:CDS 35.0%
CTAAACATATTGGATTCCCT+AGG + chr5.2:4863280-4863299 None:intergenic 35.0%
CTAGGGAATCCAATATGTTT+AGG - chr5.2:4863278-4863297 MS.gene09973:CDS 35.0%
GAAAAGCTACTTATCGTGAA+AGG + chr5.2:4862897-4862916 None:intergenic 35.0%
GATCTTCCTACTACACAAAA+AGG - chr5.2:4860787-4860806 MS.gene09973:CDS 35.0%
GTGGTTGTATTATTCTTCCA+GGG - chr5.2:4861791-4861810 MS.gene09973:intron 35.0%
TCCCTACATAATAAGGACAT+AGG + chr5.2:4863058-4863077 None:intergenic 35.0%
TCTGGTAGAAATAACTGACA+AGG - chr5.2:4862915-4862934 MS.gene09973:intron 35.0%
TCTTATCCGCTCATGAAATT+TGG - chr5.2:4860847-4860866 MS.gene09973:intron 35.0%
TGATAGCAGTTATTATCCTG+AGG - chr5.2:4861868-4861887 MS.gene09973:intron 35.0%
TGTGGTTGTATTATTCTTCC+AGG - chr5.2:4861790-4861809 MS.gene09973:intron 35.0%
TTGAGAAATTAGACATTCCC+TGG + chr5.2:4861811-4861830 None:intergenic 35.0%
TTTGTTGATCATAGCTCATG+CGG - chr5.2:4861896-4861915 MS.gene09973:intron 35.0%
! AATTGCACATGTTCTGAGTA+TGG - chr5.2:4862572-4862591 MS.gene09973:CDS 35.0%
! ATGGTCCAATAATGCTGATT+TGG - chr5.2:4861762-4861781 MS.gene09973:CDS 35.0%
! CAATTATCTGAAATGGCGAA+AGG - chr5.2:4861154-4861173 MS.gene09973:CDS 35.0%
! TTCACGATAAGTAGCTTTTC+TGG - chr5.2:4862897-4862916 MS.gene09973:intron 35.0%
!! AATGCTGATTTGGTTATGTG+TGG - chr5.2:4861772-4861791 MS.gene09973:CDS 35.0%
!! AGTTTGGAAAAGGTTCTAGA+AGG - chr5.2:4860880-4860899 MS.gene09973:intron 35.0%
!! CAGTAACTTGCCAACATTTT+TGG - chr5.2:4862544-4862563 MS.gene09973:CDS 35.0%
!! TACCATGGAGTTGATAAATG+TGG - chr5.2:4861507-4861526 MS.gene09973:CDS 35.0%
!! TGATCAACAAAAAGTACCTC+AGG + chr5.2:4861887-4861906 None:intergenic 35.0%
!!! AACATTCCTGTTTCAGGTTT+TGG - chr5.2:4862323-4862342 MS.gene09973:intron 35.0%
!!! ACATTCCTGTTTCAGGTTTT+GGG - chr5.2:4862324-4862343 MS.gene09973:intron 35.0%
AACACAAACCTGTCAGTTAG+AGG + chr5.2:4862289-4862308 None:intergenic 40.0%
AAGTATGTGTTTGGCACTTG+AGG - chr5.2:4863131-4863150 MS.gene09973:intron 40.0%
AGATCCCAATGCGTTTCAAT+AGG + chr5.2:4860772-4860791 None:intergenic 40.0%
AGGATCATTGATGTCCGAAA+CGG - chr5.2:4863008-4863027 MS.gene09973:CDS 40.0%
ATCCGCTCATGAAATTTGGA+AGG - chr5.2:4860851-4860870 MS.gene09973:intron 40.0%
ATCCTCCTATTGAAACGCAT+TGG - chr5.2:4860764-4860783 MS.gene09973:intron 40.0%
ATCTCCAACATTCCTGTTTC+AGG - chr5.2:4862317-4862336 MS.gene09973:intron 40.0%
CACAACAATGTGGTTTCAGA+AGG - chr5.2:4862988-4863007 MS.gene09973:CDS 40.0%
CTAATTTCTCAAAGCCTGCA+AGG - chr5.2:4861819-4861838 MS.gene09973:intron 40.0%
CTCCTTCCAAATTTCATGAG+CGG + chr5.2:4860856-4860875 None:intergenic 40.0%
CTTGATAAGCCTTTCTTGTG+TGG + chr5.2:4861592-4861611 None:intergenic 40.0%
GCAAGGATCCCTACATAATA+AGG + chr5.2:4863065-4863084 None:intergenic 40.0%
GGCAAATAACCACACAAGAA+AGG - chr5.2:4861580-4861599 MS.gene09973:intron 40.0%
TACTATCCTCATGGATACCA+TGG - chr5.2:4861492-4861511 MS.gene09973:CDS 40.0%
TAGAACCCAAAACCTGAAAC+AGG + chr5.2:4862332-4862351 None:intergenic 40.0%
TAGCTGCTAATGAACATGCA+GGG + chr5.2:4861656-4861675 None:intergenic 40.0%
TCCTCCTATTGAAACGCATT+GGG - chr5.2:4860765-4860784 MS.gene09973:intron 40.0%
TCGAGTCGACATGATTCATA+AGG - chr5.2:4861181-4861200 MS.gene09973:intron 40.0%
TGCCACATTTATCAACTCCA+TGG + chr5.2:4861512-4861531 None:intergenic 40.0%
TGTATCAACCTCTAACTGAC+AGG - chr5.2:4862278-4862297 MS.gene09973:CDS 40.0%
TTAGCTGCTAATGAACATGC+AGG + chr5.2:4861657-4861676 None:intergenic 40.0%
! GCATCATCTTCTGGTGTTAA+GGG - chr5.2:4860721-4860740 MS.gene09973:intron 40.0%
! TGCATCATCTTCTGGTGTTA+AGG - chr5.2:4860720-4860739 MS.gene09973:intron 40.0%
!! AACTTGCCAACATTTTTGGG+TGG - chr5.2:4862548-4862567 MS.gene09973:CDS 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG - chr5.2:4862139-4862158 MS.gene09973:intron 40.0%
AGCTTCCACCACAAGTATCT+TGG - chr5.2:4861686-4861705 MS.gene09973:intron 45.0%
CTAGAACAGGCTTGTCATGT+AGG - chr5.2:4863166-4863185 MS.gene09973:CDS 45.0%
CTGTATTGCCTTTGACGTCA+AGG - chr5.2:4861081-4861100 MS.gene09973:intron 45.0%
CTTTGACGTCAAGGTTTCTG+CGG - chr5.2:4861090-4861109 MS.gene09973:intron 45.0%
GACATCCAAGATACTTGTGG+TGG + chr5.2:4861694-4861713 None:intergenic 45.0%
GATGTTGTGGAAAGCAGTGA+AGG - chr5.2:4862152-4862171 MS.gene09973:intron 45.0%
GGTTGCTTGATGAGTGATCA+AGG - chr5.2:4862596-4862615 MS.gene09973:CDS 45.0%
TAGCTCATGCGGAGAAGATT+TGG - chr5.2:4861907-4861926 MS.gene09973:intron 45.0%
TATCCTCTAGCAACACACTG+AGG + chr5.2:4862359-4862378 None:intergenic 45.0%
TCAACTCCATGGTATCCATG+AGG + chr5.2:4861501-4861520 None:intergenic 45.0%
TCCATGAAGATGTACCTTGC+AGG + chr5.2:4861836-4861855 None:intergenic 45.0%
TCCCAATGCGTTTCAATAGG+AGG + chr5.2:4860769-4860788 None:intergenic 45.0%
TGCACTTCAAGACACCAAGA+TGG - chr5.2:4863352-4863371 MS.gene09973:CDS 45.0%
TGCTAGAGGATATTGATCCG+AGG - chr5.2:4862367-4862386 MS.gene09973:intron 45.0%
TGTCATTGAGCTCACCATCT+TGG + chr5.2:4863369-4863388 None:intergenic 45.0%
TGTGCAAAACATTGCATCCG+AGG + chr5.2:4862246-4862265 None:intergenic 45.0%
TTGCTACTGTGCGTTCACTT+AGG + chr5.2:4862182-4862201 None:intergenic 45.0%
TTTGTTCTTGGCCGAAAGCA+TGG + chr5.2:4862831-4862850 None:intergenic 45.0%
! CTTCTGGTGTTAAGGGATTG+AGG - chr5.2:4860728-4860747 MS.gene09973:intron 45.0%
! TGCACATGTTCTGAGTATGG+AGG - chr5.2:4862575-4862594 MS.gene09973:CDS 45.0%
! TTACCTCAGTGTGTTGCTAG+AGG - chr5.2:4862353-4862372 MS.gene09973:intron 45.0%
!! GATTGGCTTGAAGCTAGTCT+TGG - chr5.2:4863207-4863226 MS.gene09973:CDS 45.0%
!!! TTAAATATGAAATTTTTATT+TGG - chr5.2:4861242-4861261 MS.gene09973:intron 5.0%
ATGAGTACTCCAACGGCGAA+AGG - chr5.2:4860655-4860674 MS.gene09973:CDS 50.0%
CAGACAACGGAAGAGATGGA+TGG - chr5.2:4862955-4862974 MS.gene09973:CDS 50.0%
CATGCAGACAACGGAAGAGA+TGG - chr5.2:4862951-4862970 MS.gene09973:CDS 50.0%
CGCAGAAACCTTGACGTCAA+AGG + chr5.2:4861092-4861111 None:intergenic 50.0%
CGCGAAATGCTTTCACGTGA+GGG - chr5.2:4860943-4860962 MS.gene09973:CDS 50.0%
GAGACAACAAGGGCTAGAAC+AGG - chr5.2:4863153-4863172 MS.gene09973:CDS 50.0%
GCCTGCAAGGTACATCTTCA+TGG - chr5.2:4861832-4861851 MS.gene09973:intron 50.0%
GGCACTTGAGGAGACAACAA+GGG - chr5.2:4863143-4863162 MS.gene09973:CDS 50.0%
TCGCGAAATGCTTTCACGTG+AGG - chr5.2:4860942-4860961 MS.gene09973:CDS 50.0%
TGATGAGTGATCAAGGCCCA+TGG - chr5.2:4862603-4862622 MS.gene09973:CDS 50.0%
TGCGTGCGAACACAACAATG+TGG - chr5.2:4862978-4862997 MS.gene09973:CDS 50.0%
TGGCACTTGAGGAGACAACA+AGG - chr5.2:4863142-4863161 MS.gene09973:CDS 50.0%
CTGTCTTCGCCTTTCGCCGT+TGG + chr5.2:4860667-4860686 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 4860655 4863485 4860655 ID=MS.gene09973
chr5.2 mRNA 4860655 4863485 4860655 ID=MS.gene09973.t1;Parent=MS.gene09973
chr5.2 exon 4863133 4863485 4863133 ID=MS.gene09973.t1.exon1;Parent=MS.gene09973.t1
chr5.2 CDS 4863133 4863485 4863133 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4862938 4863037 4862938 ID=MS.gene09973.t1.exon2;Parent=MS.gene09973.t1
chr5.2 CDS 4862938 4863037 4862938 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4862418 4862684 4862418 ID=MS.gene09973.t1.exon3;Parent=MS.gene09973.t1
chr5.2 CDS 4862418 4862684 4862418 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4862251 4862328 4862251 ID=MS.gene09973.t1.exon4;Parent=MS.gene09973.t1
chr5.2 CDS 4862251 4862328 4862251 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4861931 4862032 4861931 ID=MS.gene09973.t1.exon5;Parent=MS.gene09973.t1
chr5.2 CDS 4861931 4862032 4861931 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4861752 4861801 4861752 ID=MS.gene09973.t1.exon6;Parent=MS.gene09973.t1
chr5.2 CDS 4861752 4861801 4861752 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4861485 4861593 4861485 ID=MS.gene09973.t1.exon7;Parent=MS.gene09973.t1
chr5.2 CDS 4861485 4861593 4861485 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4861111 4861182 4861111 ID=MS.gene09973.t1.exon8;Parent=MS.gene09973.t1
chr5.2 CDS 4861111 4861182 4861111 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4860898 4861035 4860898 ID=MS.gene09973.t1.exon9;Parent=MS.gene09973.t1
chr5.2 CDS 4860898 4861035 4860898 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4860767 4860811 4860767 ID=MS.gene09973.t1.exon10;Parent=MS.gene09973.t1
chr5.2 CDS 4860767 4860811 4860767 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
chr5.2 exon 4860655 4860690 4860655 ID=MS.gene09973.t1.exon11;Parent=MS.gene09973.t1
chr5.2 CDS 4860655 4860690 4860655 ID=cds.MS.gene09973.t1;Parent=MS.gene09973.t1
Gene Sequence

>MS.gene09973

ATGAGTACTCCAACGGCGAAAGGCGAAGACAGAGATATTGTTATAACAAGAAGTGATAGAAAAGATGCATCATCTTCTGGTGTTAAGGGATTGAGGACCAAATCAATTCATCCTCCTATTGAAACGCATTGGGATCTTCCTACTACACAAAAAGGAAAGAAAAAAGCTTCATTCTCCATCAAGTCATTGTTGTCTTATCCGCTCATGAAATTTGGAAGGAGTAAAAGTTTGGAAAAGGTTCTAGAAGGAACTCATGATCCAAATGATGAACAAATTGTTGAGGCTTTTCGCGAAATGCTTTCACGTGAGGGTCTATTACCACCTAAACACAATGATTATCATACTCTTCTAAGGTATATAGATTAAGATTATAAATGTCTATTTCTCTTTCTGTTCTAAATCATGTTTATGGACTTGGTTTTCTAACTGTATTGCCTTTGACGTCAAGGTTTCTGCGGATGAATGATTTTGATATGACAATATCCAAAGATATGTTTCTCAATTATCTGAAATGGCGAAAGGAATTTCGAGTCGACATGATTCATAAGGTGAATTGACTCAAAAGGATTTCGATGCACATAAAATTTTTAAATATGAAATTTTTATTTGGTTGGTTGATATATCGTATATAACAATATTTTATGCCATAACTTTTTAAAAACTTATTAATATAATTATAAAGTTCTTCTTTATCTTTTGTCTGCATGCTAAGTTTTAGTTCAATAATGATGTTATTGAGTATTGACCATAGTTGAGTTTTAATTTGTTTTTGATGTCATTCATTTTCTGGTACATAATCAGGAATTCAAATTCACAGAATACACAGAAGTGAAAAAATACTATCCTCATGGATACCATGGAGTTGATAAATGTGGCAGACCTGTGTATATTGAGAGAATTGGGATGATAGATATTAACAAACTGTGGCAAATAACCACACAAGAAAGGCTTATCAAGCATCATGTGTCAGAACAAGAGAAAACACTAAGAGTAAGATACCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACCACAAGTATCTTGGATGTCAATGGAGTAGTAAGCAAATTTTTGATATAGTGTTTCATAATTTACTATATGGTCCAATAATGCTGATTTGGTTATGTGTGGTTGTATTATTCTTCCAGGGAATGTCTAATTTCTCAAAGCCTGCAAGGTACATCTTCATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGGTACTTTTTGTTGATCATAGCTCATGCGGAGAAGATTTGGATATATGTGACTGCTATTAATGTGTGATTAAGTTAGATTATCTGATAATATGATAATGATTATATAGTTTTCAAAGTTTACAACAATAATAACATAAAAAGTTAAAGACAAATTCTTAAATTTTTATTGTAGTAGTTTCCCTATTGAAGTCGATTAAAATTCATCTTTATTCTTGCAGACTCTAAATAAACTCTTTATTATTAATGCTGGTTCTGGCTTTAAGATGTTGTGGAAAGCAGTGAAGGCATTCCTAAGTGAACGCACAGTAGCAAAAATTCAAGTACGGATAATTAATATATCAAAGATTTTTTCACCTCGGATGCAATGTTTTGCACAACTATATTTTGTTGTATCAACCTCTAACTGACAGGTTTGTGTTTATGTTAAATCTCCAACATTCCTGTTTCAGGTTTTGGGTTCTAATTACCTCAGTGTGTTGCTAGAGGATATTGATCCGAGGTAAAATGACTTTTGTATAGTTAAGCCGTGATTTTTTTCAGTAGCAACTTAGAAAGTTGAAGCCTTTTTTTGATGAATATGTTACTACTTACAATTAGGCCTTTTTGTGATGTTCTACCTTTAATGAAACTCTTAGATTTAATTGTTTAATTTCTCAGTAACTTGCCAACATTTTTGGGTGGTAATTGCACATGTTCTGAGTATGGAGGTTGCTTGATGAGTGATCAAGGCCCATGGAAAAATCCAGAATTGTTAGAAATGATTCAGGTTTGTCAATATCAAGAGCGGCATTTTAAACTCTTTCAACAAAACTAGCTTTTTGTATTTTTATTTGTCTTGTAGAAACAGGAAAATGCTATAGTTGTCACGAAAAAATGGGTCGCGACAACATCATAAGTGCAAGTAATTGAGAGTCACATAAATTAGAGTTATTCAACTACCATGCTTTCGGCCAAGAACAAATTTAATTGATTAAACACAAATTCGTTAGCTATTCGTGAACAAACCTTTCACGATAAGTAGCTTTTCTGGTAGAAATAACTGACAAGGATGTAAAATTATTCATGCAGACAACGGAAGAGATGGATGGTGCGTGCGAACACAACAATGTGGTTTCAGAAGGATCATTGATGTCCGAAACGGTAACAGATCATTATCATAGTCGTACCTATGTCCTTATTATGTAGGGATCCTTGCTTAAACATAGTTAAATGCAGGTTGAAATGCAAAACAAAGATGATTTAAGTATGTGTTTGGCACTTGAGGAGACAACAAGGGCTAGAACAGGCTTGTCATGTAGGTTAGCATTACAAAAAATTGATTGGCTTGAAGCTAGTCTTGGAGATATCAAGAATGTGAGTTTTTATGCAATAATTTCTCTATGTTAAACCTAGGGAATCCAATATGTTTAGGGTAATTTGCTGATTTATAATACTTGTAGCAGAAAATAAAGACATTAGAAGATGCACTTCAAGACACCAAGATGGTGAGCTCAATGACACTATTGAATCTTTTTTCTAGTATAGTAATATCAAATGACTGTTTCTTTTTTTCTCTTTCAGGCATTGAAAGAACTTGCACAACATATAGAACAATAA
Protein sequence

>MS.gene09973.t1

MSTPTAKGEDRDIVITRSDRKDASSSGVKGLRTKSIHPPIETHWDLPTTQKGKKKASFSIKSLLSYPLMKFGRSKSLEKVLEGTHDPNDEQIVEAFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKDMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKYYPHGYHGVDKCGRPVYIERIGMIDINKLWQITTQERLIKHHVSEQEKTLRVRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIINAGSGFKMLWKAVKAFLSERTVAKIQVLGSNYLSVLLEDIDPSNLPTFLGGNCTCSEYGGCLMSDQGPWKNPELLEMIQTTEEMDGACEHNNVVSEGSLMSETVEMQNKDDLSMCLALEETTRARTGLSCRLALQKIDWLEASLGDIKNQKIKTLEDALQDTKMALKELAQHIEQ