AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058909


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058909.t1 MTR_8g089660 98.011 704 14 0 1 704 1 704 0.0 1444
MS.gene058909.t1 MTR_3g075450 52.991 702 316 8 7 704 15 706 0.0 745
MS.gene058909.t1 MTR_7g032660 43.723 693 375 11 20 704 26 711 0.0 570
MS.gene058909.t1 MTR_1g074950 32.521 698 402 20 17 703 23 662 1.70e-105 336
MS.gene058909.t1 MTR_1g074990 31.746 693 413 23 17 703 22 660 3.32e-100 322
MS.gene058909.t1 MTR_1g075095 31.124 694 418 23 17 703 22 662 3.14e-96 311
MS.gene058909.t1 MTR_1g075230 30.914 689 419 21 22 704 26 663 8.34e-95 308
MS.gene058909.t1 MTR_1g075030 30.836 694 420 23 17 703 22 662 3.05e-94 306
MS.gene058909.t1 MTR_1g040360 29.014 710 416 24 20 703 30 677 1.06e-77 263
MS.gene058909.t1 MTR_1g075170 25.301 664 369 25 88 704 84 667 3.09e-47 178
MS.gene058909.t1 MTR_1g075180 27.202 647 372 24 87 704 60 636 1.11e-46 176
MS.gene058909.t1 MTR_1g075153 25.645 620 396 19 101 704 93 663 3.26e-44 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058909.t1 AT3G01680 39.973 728 389 14 1 704 26 729 0.0 540
MS.gene058909.t1 AT3G01670 37.260 730 401 14 5 704 120 822 2.49e-156 473
MS.gene058909.t1 AT3G01670 37.260 730 401 14 5 704 144 846 6.50e-156 473
MS.gene058909.t1 AT1G67790 27.273 704 454 20 13 700 3 664 2.79e-74 253

Find 0 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAGATCAAAAGTTAAA+TGG + 57395:23736-23755 None:intergenic 15.0%
!!! AGTATAATAATTGTTCTTTT+GGG - 57395:23755-23774 MS.gene058909:CDS 15.0%
!!! TAGTATAATAATTGTTCTTT+TGG - 57395:23754-23773 MS.gene058909:CDS 15.0%
!! ATATAGAGAATGAAAAACAT+AGG + 57395:23571-23590 None:intergenic 20.0%
!! ATCTTATTATTCATTGTTTC+AGG - 57395:23971-23990 MS.gene058909:intron 20.0%
!! GAATAATAAGATCAAAAGAA+CGG + 57395:23963-23982 None:intergenic 20.0%
!! TTATAACAGACTTTATGAAT+CGG + 57395:23860-23879 None:intergenic 20.0%
!!! AACATTAAGATATTTGTTGT+TGG + 57395:22383-22402 None:intergenic 20.0%
!!! ATCTAGTTCTAGAAAATATT+CGG + 57395:21824-21843 None:intergenic 20.0%
!!! TCATTATTTCTAGCATTATT+TGG + 57395:24283-24302 None:intergenic 20.0%
!!! TTGTTTTGAAATTTTACACA+GGG - 57395:21450-21469 MS.gene058909:CDS 20.0%
! AATGTTATCAAGCTATTCAT+GGG - 57395:21951-21970 MS.gene058909:intron 25.0%
! AATTAACAAAATTTCATGCG+AGG - 57395:21554-21573 MS.gene058909:CDS 25.0%
! AGAAGAACCAAATTATTGTT+GGG + 57395:24199-24218 None:intergenic 25.0%
! ATTTAAACATGTAATTCCCA+TGG + 57395:23790-23809 None:intergenic 25.0%
! CAATATTGTCACTCATATTT+GGG + 57395:21762-21781 None:intergenic 25.0%
! CTTTGATTGCTAAAATATAG+CGG - 57395:22571-22590 MS.gene058909:CDS 25.0%
! GTTAATTAACTATGTGTTTG+TGG - 57395:21427-21446 MS.gene058909:CDS 25.0%
! TCAATATTGTCACTCATATT+TGG + 57395:21763-21782 None:intergenic 25.0%
! TCTGTTATAAACAATCTTCT+TGG - 57395:23870-23889 MS.gene058909:CDS 25.0%
!! AAAGTCAATATGAACTTGTT+TGG - 57395:23200-23219 MS.gene058909:intron 25.0%
!! TTATTCATTGTTTCAGGTAA+CGG - 57395:23977-23996 MS.gene058909:intron 25.0%
!!! AACAATAATTTGGTTCTTCT+GGG - 57395:24199-24218 MS.gene058909:intron 25.0%
!!! CTAAATCAAGTTGATGATTT+AGG - 57395:22102-22121 MS.gene058909:intron 25.0%
!!! GTTGTTTTGAAATTTTACAC+AGG - 57395:21449-21468 MS.gene058909:CDS 25.0%
!!! TGTTTTGCTTTGTTGTAATT+TGG + 57395:24249-24268 None:intergenic 25.0%
AAATACATATGCTTGTATGG+AGG - 57395:24005-24024 MS.gene058909:intron 30.0%
AATACATATGCTTGTATGGA+GGG - 57395:24006-24025 MS.gene058909:intron 30.0%
ACATCAACATGTTCTTCAAT+TGG + 57395:21287-21306 None:intergenic 30.0%
ATATCTTGCAAGTGTATGAT+GGG - 57395:21889-21908 MS.gene058909:intron 30.0%
ATTAACCTGTTACAATGATG+TGG + 57395:24491-24510 None:intergenic 30.0%
ATTACAACAAAGCAAAACAG+TGG - 57395:24250-24269 MS.gene058909:CDS 30.0%
CAGAAGAACCAAATTATTGT+TGG + 57395:24200-24219 None:intergenic 30.0%
CGTCAACATTTAGGTAATTA+AGG - 57395:22548-22567 MS.gene058909:CDS 30.0%
GAATGTTATCAAGCTATTCA+TGG - 57395:21950-21969 MS.gene058909:intron 30.0%
GAGCTTGTAGAAACAATTTA+CGG + 57395:21738-21757 None:intergenic 30.0%
GCATAACCAAACTAATAAAG+TGG - 57395:23606-23625 MS.gene058909:CDS 30.0%
TAAATATGCATGCTAATGCA+TGG + 57395:21594-21613 None:intergenic 30.0%
TAACATTCCAAGTATTCCTA+TGG + 57395:21938-21957 None:intergenic 30.0%
TCTTGAACAACATTAAGTAG+AGG + 57395:21314-21333 None:intergenic 30.0%
TGATCCATTACTCTTTGATT+GGG - 57395:23540-23559 MS.gene058909:CDS 30.0%
TGTTACAAAAAATGCATTGC+CGG - 57395:21789-21808 MS.gene058909:intron 30.0%
TTAGAACCTTAATGTTATCC+TGG + 57395:22821-22840 None:intergenic 30.0%
TTGATCCATTACTCTTTGAT+TGG - 57395:23539-23558 MS.gene058909:CDS 30.0%
TTTCTAACCTTGTTGAATCT+TGG + 57395:23183-23202 None:intergenic 30.0%
! ACACTGTATGGTTTTTCTTT+AGG - 57395:22692-22711 MS.gene058909:CDS 30.0%
! AGTTAGCCACTTTATTAGTT+TGG + 57395:23615-23634 None:intergenic 30.0%
! CGTAGTATCATTATGCTTTT+TGG - 57395:21402-21421 MS.gene058909:CDS 30.0%
! TACATGTAGAACTTTTCCAT+TGG + 57395:24572-24591 None:intergenic 30.0%
! TCCAGTAACTAAATTGACTT+AGG + 57395:22628-22647 None:intergenic 30.0%
! TCTTTGGAAAGATGAAACAT+GGG - 57395:23492-23511 MS.gene058909:CDS 30.0%
! TTATCCTTTCTCTAGCTTAA+GGG - 57395:23462-23481 MS.gene058909:CDS 30.0%
!! ATAATCATTTTTCTGCCTTC+AGG - 57395:23048-23067 MS.gene058909:intron 30.0%
!! CAACAATAATTTGGTTCTTC+TGG - 57395:24198-24217 MS.gene058909:intron 30.0%
!! TTATTCCTAGTGCTGTTTAT+TGG - 57395:22256-22275 MS.gene058909:CDS 30.0%
!!! AAATATTCGGTTTTTAGTGC+CGG + 57395:21811-21830 None:intergenic 30.0%
!!! AGTTGCTAATTTTGATTGTC+CGG + 57395:23909-23928 None:intergenic 30.0%
!!! ATTCTTTTAACTTTCTGTCC+TGG + 57395:24131-24150 None:intergenic 30.0%
!!! CTCAAACTTCTGTTTTGTTT+CGG + 57395:23257-23276 None:intergenic 30.0%
!!! TTCTTTTAACTTTCTGTCCT+GGG + 57395:24130-24149 None:intergenic 30.0%
AACAACCACATCATTGTAAC+AGG - 57395:24483-24502 MS.gene058909:CDS 35.0%
AACTGTCGTGTATTTGATGA+AGG + 57395:23670-23689 None:intergenic 35.0%
AAGAACTCTACAAATTCCAC+TGG - 57395:24079-24098 MS.gene058909:intron 35.0%
AAGGGTGATGTGAATGATAA+AGG - 57395:24422-24441 MS.gene058909:CDS 35.0%
AAGTATCAGGTACATTAAGG+AGG - 57395:23336-23355 MS.gene058909:intron 35.0%
ACTTGTTTGGATTCCAATTG+TGG - 57395:23213-23232 MS.gene058909:intron 35.0%
AGTACACATGATGTGGATTT+GGG - 57395:23429-23448 MS.gene058909:intron 35.0%
ATACATATGCTTGTATGGAG+GGG - 57395:24007-24026 MS.gene058909:intron 35.0%
ATCTCACCAGGATAACATTA+AGG - 57395:22812-22831 MS.gene058909:intron 35.0%
CAACCTCTTGATCAGATATA+TGG + 57395:23129-23148 None:intergenic 35.0%
CACTGGAAATGATGTATGTA+GGG - 57395:24096-24115 MS.gene058909:intron 35.0%
CATCTGCATCGTAACATATT+TGG + 57395:22743-22762 None:intergenic 35.0%
CTAACCCAATCAAAGAGTAA+TGG + 57395:23547-23566 None:intergenic 35.0%
GAACCAAATTATTGTTGGGT+CGG + 57395:24195-24214 None:intergenic 35.0%
GATATCTTGCAAGTGTATGA+TGG - 57395:21888-21907 MS.gene058909:intron 35.0%
GCAATGGATGATTACATACA+AGG - 57395:24455-24474 MS.gene058909:CDS 35.0%
GCCTAAGTCAATTTAGTTAC+TGG - 57395:22624-22643 MS.gene058909:CDS 35.0%
GCTATTGTCATAAGCTATCT+TGG - 57395:21672-21691 MS.gene058909:CDS 35.0%
GGCAAATACATATGCTTGTA+TGG - 57395:24002-24021 MS.gene058909:intron 35.0%
GTCCTAAAGATAGACTGATA+GGG - 57395:23707-23726 MS.gene058909:CDS 35.0%
GTGTATTTGATGAAGGAGAA+AGG + 57395:23663-23682 None:intergenic 35.0%
GTGTGTTAATCATGAAGATG+AGG - 57395:22664-22683 MS.gene058909:CDS 35.0%
TCCTAAAGATAGACTGATAG+GGG - 57395:23708-23727 MS.gene058909:CDS 35.0%
TGGATTCCAATTGTGGAAAA+GGG - 57395:23220-23239 MS.gene058909:intron 35.0%
TGTAACAGGTTAATACTTCC+AGG - 57395:24497-24516 MS.gene058909:CDS 35.0%
TGTATGTAATCATCCATTGC+AGG + 57395:24455-24474 None:intergenic 35.0%
TGTTACAATGATGTGGTTGT+TGG + 57395:24484-24503 None:intergenic 35.0%
TTAATACTTCCAGGAGTTGA+TGG - 57395:24506-24525 MS.gene058909:CDS 35.0%
TTAATGTACCTGATACTTGC+CGG + 57395:23334-23353 None:intergenic 35.0%
TTGGATTCCAATTGTGGAAA+AGG - 57395:23219-23238 MS.gene058909:intron 35.0%
TTGGTAGAACCATCAAACAA+TGG + 57395:22876-22895 None:intergenic 35.0%
TTTGATTGTCCGGTCTAAAT+CGG + 57395:23899-23918 None:intergenic 35.0%
! AAATTTTACACAGGGAAAGC+AGG - 57395:21458-21477 MS.gene058909:CDS 35.0%
! CTATCAGTCTATCTTTAGGA+CGG + 57395:23708-23727 None:intergenic 35.0%
! CTCTTTGGAAAGATGAAACA+TGG - 57395:23491-23510 MS.gene058909:CDS 35.0%
! CTTATCCTTTCTCTAGCTTA+AGG - 57395:23461-23480 MS.gene058909:CDS 35.0%
! CTTTGGAAAGATGAAACATG+GGG - 57395:23493-23512 MS.gene058909:CDS 35.0%
! GCTCAGATTTTCGTCATATA+TGG + 57395:24162-24181 None:intergenic 35.0%
! TTTAAAGTGCCTTGATGAGT+TGG - 57395:24391-24410 MS.gene058909:intron 35.0%
!! AAGATATTTGTTGTTGGTGC+AGG + 57395:22377-22396 None:intergenic 35.0%
!! TAATTTGGTTCTTCTGGGTT+AGG - 57395:24204-24223 MS.gene058909:intron 35.0%
!! TGCTAAAATATAGCGGATAG+CGG - 57395:22578-22597 MS.gene058909:CDS 35.0%
AACAGCACTAGGAATAAGAG+TGG + 57395:22253-22272 None:intergenic 40.0%
AAGATTGTATGTGCTGAGTG+TGG - 57395:24542-24561 MS.gene058909:CDS 40.0%
ACACATACCTGAATGATGTC+AGG + 57395:21365-21384 None:intergenic 40.0%
ACATCATGTGTACTGCATTC+AGG + 57395:23423-23442 None:intergenic 40.0%
ACCTAAATGTTGACGACAGA+TGG + 57395:22543-22562 None:intergenic 40.0%
AGCCAATGATGCCGAAAATA+TGG + 57395:22311-22330 None:intergenic 40.0%
AGTTTATGACCCTTCACTTC+TGG - 57395:23306-23325 MS.gene058909:CDS 40.0%
ATCGTCCAATAAACAGCACT+AGG + 57395:22264-22283 None:intergenic 40.0%
CACATACCTGAATGATGTCA+GGG + 57395:21364-21383 None:intergenic 40.0%
CAGTACACATGATGTGGATT+TGG - 57395:23428-23447 MS.gene058909:intron 40.0%
CATGTAATTCCCATGGAATC+TGG + 57395:23783-23802 None:intergenic 40.0%
CCACCATATATCTGATCAAG+AGG - 57395:23123-23142 MS.gene058909:intron 40.0%
CCACTGGAAATGATGTATGT+AGG - 57395:24095-24114 MS.gene058909:intron 40.0%
CCTACATACATCATTTCCAG+TGG + 57395:24098-24117 None:intergenic 40.0%
CCTCTTGATCAGATATATGG+TGG + 57395:23126-23145 None:intergenic 40.0%
CGTCCTAAAGATAGACTGAT+AGG - 57395:23706-23725 MS.gene058909:CDS 40.0%
CTTGATCAGATATATGGTGG+AGG + 57395:23123-23142 None:intergenic 40.0%
GAACCATCAAACAATGGCAA+CGG + 57395:22870-22889 None:intergenic 40.0%
GACATCAACAACAGAGACAT+GGG - 57395:22457-22476 MS.gene058909:CDS 40.0%
GATCACTGCTATCAAAGCTT+AGG + 57395:24310-24329 None:intergenic 40.0%
GATGAGGAAGAAACACTGTA+TGG - 57395:22680-22699 MS.gene058909:CDS 40.0%
GCAATCAGTAACATCCAACA+TGG + 57395:22163-22182 None:intergenic 40.0%
GCCAATGATGCCGAAAATAT+GGG + 57395:22310-22329 None:intergenic 40.0%
GGCAAGTATCAGGTACATTA+AGG - 57395:23333-23352 MS.gene058909:intron 40.0%
GGTTGGGCTATAATAAGTCA+AGG - 57395:24332-24351 MS.gene058909:intron 40.0%
GTACACATGATGTGGATTTG+GGG - 57395:23430-23449 MS.gene058909:intron 40.0%
GTCAAATAAGTCAGACTCGT+TGG + 57395:21511-21530 None:intergenic 40.0%
TCAGCACATACAATCTTGTC+TGG + 57395:24539-24558 None:intergenic 40.0%
TCCCCTATCAGTCTATCTTT+AGG + 57395:23712-23731 None:intergenic 40.0%
TGAATGCAGTACACATGATG+TGG - 57395:23422-23441 MS.gene058909:intron 40.0%
TGACATCAACAACAGAGACA+TGG - 57395:22456-22475 MS.gene058909:CDS 40.0%
TGATAGCAGTGATCTTGGTT+GGG - 57395:24316-24335 MS.gene058909:intron 40.0%
TGGTTCACAGCTTCGAATTT+AGG + 57395:22129-22148 None:intergenic 40.0%
TTCTATGCTAACCCTTTGCT+TGG + 57395:22895-22914 None:intergenic 40.0%
TTCTTCAATTGGAGCATGAG+TGG + 57395:21276-21295 None:intergenic 40.0%
! AAAAGCTTTGATTCGCTGCA+AGG - 57395:22839-22858 MS.gene058909:intron 40.0%
! AGCTTTGATAGCAGTGATCT+TGG - 57395:24311-24330 MS.gene058909:intron 40.0%
! ATGCAACCGATTTAGCAAGA+CGG + 57395:22059-22078 None:intergenic 40.0%
! CACAAGTGCTGCAAAATCAA+TGG - 57395:24055-24074 MS.gene058909:intron 40.0%
! GCATGTGCATCCCATATTTT+CGG - 57395:22297-22316 MS.gene058909:CDS 40.0%
! GTTTTCGGCATCAGATGATA+CGG - 57395:21229-21248 MS.gene058909:CDS 40.0%
! TAAAGGAGTTTTGCCTGCAA+TGG - 57395:24439-24458 MS.gene058909:CDS 40.0%
! TCATGGTCAATGTACTGATC+AGG + 57395:22207-22226 None:intergenic 40.0%
! TCCCATATTTTCGGCATCAT+TGG - 57395:22306-22325 MS.gene058909:CDS 40.0%
! TGATGGTTCTACCAAGCAAA+GGG - 57395:22881-22900 MS.gene058909:intron 40.0%
! TGTAGAACTTTTCCATTGGC+TGG + 57395:24568-24587 None:intergenic 40.0%
! TTGATAGCAGTGATCTTGGT+TGG - 57395:24315-24334 MS.gene058909:intron 40.0%
! TTGATGGTTCTACCAAGCAA+AGG - 57395:22880-22899 MS.gene058909:intron 40.0%
!! GTGCTGTTTATTGGACGATT+AGG - 57395:22265-22284 MS.gene058909:CDS 40.0%
!! TATTTTCGGCATCATTGGCT+TGG - 57395:22311-22330 MS.gene058909:CDS 40.0%
!! TTGGACGATTAGGAGTATTG+TGG - 57395:22275-22294 MS.gene058909:CDS 40.0%
!!! ATTTTCGGCATCATTGGCTT+GGG - 57395:22312-22331 MS.gene058909:CDS 40.0%
!!! TTTTGGGATCCAGATTCCAT+GGG - 57395:23771-23790 MS.gene058909:CDS 40.0%
AAAGCCTATGCTTGTGGTGT+TGG - 57395:23375-23394 MS.gene058909:intron 45.0%
AACATGGGGACTTGCACTAT+TGG - 57395:23507-23526 MS.gene058909:CDS 45.0%
AAGCTATTCATGGGATGCCA+AGG - 57395:21960-21979 MS.gene058909:intron 45.0%
AATCGCGCCAAGATTCAACA+AGG - 57395:23173-23192 MS.gene058909:intron 45.0%
ACACCTCAATGCTAACCTGA+AGG + 57395:23066-23085 None:intergenic 45.0%
AGCTGTGAACCATCTTCTCA+AGG - 57395:22137-22156 MS.gene058909:intron 45.0%
AGGCACAGTAAGAATGACAC+AGG - 57395:24352-24371 MS.gene058909:intron 45.0%
ATGGAGGGGATGATATGGAA+TGG - 57395:24021-24040 MS.gene058909:intron 45.0%
CAACACAAAGCCTATGCTTG+TGG - 57395:23369-23388 MS.gene058909:intron 45.0%
CACCAACCGTCTTGCTAAAT+CGG - 57395:22050-22069 MS.gene058909:intron 45.0%
CAGAAGCTAGACAGCATGAA+TGG - 57395:22497-22516 MS.gene058909:CDS 45.0%
CATCTGATGCCGAAAACATG+TGG + 57395:21226-21245 None:intergenic 45.0%
CCTGGTGAGATGTCTCAAAA+AGG + 57395:22803-22822 None:intergenic 45.0%
CTTGTATGGAGGGGATGATA+TGG - 57395:24016-24035 MS.gene058909:intron 45.0%
GACTGCAATCAATGATGCCA+TGG - 57395:23278-23297 MS.gene058909:CDS 45.0%
GATCCGTTGCCATTGTTTGA+TGG - 57395:22864-22883 MS.gene058909:intron 45.0%
GCATGCTAATGCATGGAGAT+GGG + 57395:21587-21606 None:intergenic 45.0%
GCCATCTGTCGTCAACATTT+AGG - 57395:22539-22558 MS.gene058909:CDS 45.0%
GGAATTGTTCCATCAACTCC+TGG + 57395:24518-24537 None:intergenic 45.0%
GGCACAGTAAGAATGACACA+GGG - 57395:24353-24372 MS.gene058909:intron 45.0%
GGGATGATATGGAATGGATC+AGG - 57395:24027-24046 MS.gene058909:intron 45.0%
GGGTCATAAACTGAGTACCA+TGG + 57395:23298-23317 None:intergenic 45.0%
GTAAGAATGACACAGGGCAA+AGG - 57395:24359-24378 MS.gene058909:intron 45.0%
TATGTAGGGAAAAGCAACCC+AGG - 57395:24110-24129 MS.gene058909:intron 45.0%
TCAGGTACATTAAGGAGGTG+TGG - 57395:23341-23360 MS.gene058909:intron 45.0%
TCCAAGTATTCCTATGGCTG+TGG + 57395:21932-21951 None:intergenic 45.0%
TCCACTCATCCAACTCATCA+AGG + 57395:24403-24422 None:intergenic 45.0%
TCCTCCCTTAAGCTAGAGAA+AGG + 57395:23469-23488 None:intergenic 45.0%
TCGCCGACCCAACAATAATT+TGG - 57395:24189-24208 MS.gene058909:intron 45.0%
TCTCATCCCTGACATCATTC+AGG - 57395:21355-21374 MS.gene058909:CDS 45.0%
TGCATGCTAATGCATGGAGA+TGG + 57395:21588-21607 None:intergenic 45.0%
TGCTAATGCTATCACCACCT+TGG + 57395:21980-21999 None:intergenic 45.0%
! AACCGATTTAGCAAGACGGT+TGG + 57395:22055-22074 None:intergenic 45.0%
! AAGGCTCCCTTTTCCACAAT+TGG + 57395:23229-23248 None:intergenic 45.0%
! AGCTATGCGCCACATGTTTT+CGG - 57395:21214-21233 MS.gene058909:CDS 45.0%
! GATGAGTTGGATGAGTGGAA+GGG - 57395:24404-24423 MS.gene058909:intron 45.0%
! GTCTAGCTTCTGAGTCAAAC+TGG + 57395:22489-22508 None:intergenic 45.0%
! TCAACGTTTCAGGTGCTTCA+TGG + 57395:22224-22243 None:intergenic 45.0%
! TCATTGTTTCAGGTAACGGC+AGG - 57395:23981-24000 MS.gene058909:intron 45.0%
! TCCTTTCTCTAGCTTAAGGG+AGG - 57395:23465-23484 MS.gene058909:CDS 45.0%
! TCTTGCAAGTGTATGATGGG+TGG - 57395:21892-21911 MS.gene058909:intron 45.0%
! TGATGAGTTGGATGAGTGGA+AGG - 57395:24403-24422 MS.gene058909:intron 45.0%
!! AGATGGCGAGCTGATTTTGA+AGG + 57395:22526-22545 None:intergenic 45.0%
!! AGGTTAGCATTGAGGTGTTG+AGG - 57395:23068-23087 MS.gene058909:intron 45.0%
!! AGTCTATCTTTAGGACGGTG+AGG + 57395:23703-23722 None:intergenic 45.0%
!! CTTGCAAGTGTATGATGGGT+GGG - 57395:21893-21912 MS.gene058909:intron 45.0%
!! GGTGCAAATGGGTGTCATTA+AGG - 57395:21479-21498 MS.gene058909:CDS 45.0%
!! TTGCAAGTGTATGATGGGTG+GGG - 57395:21894-21913 MS.gene058909:intron 45.0%
!!! CCTTTTTGAGACATCTCACC+AGG - 57395:22800-22819 MS.gene058909:intron 45.0%
!!! CTGTTTTGTTTCGGTCCACA+AGG + 57395:23248-23267 None:intergenic 45.0%
!!! CTTTTGGGATCCAGATTCCA+TGG - 57395:23770-23789 MS.gene058909:CDS 45.0%
AAGCCAGAATTCCCCTAGGT+TGG + 57395:22013-22032 None:intergenic 50.0%
ACAGGGAAAGCAGGTGCAAA+TGG - 57395:21467-21486 MS.gene058909:CDS 50.0%
AGCATTTGCAGCCAACCTAG+GGG - 57395:21999-22018 MS.gene058909:intron 50.0%
CAGCATTTGCAGCCAACCTA+GGG - 57395:21998-22017 MS.gene058909:intron 50.0%
CAGGGAAAGCAGGTGCAAAT+GGG - 57395:21468-21487 MS.gene058909:CDS 50.0%
CCATCTTCTCAAGGCCATGT+TGG - 57395:22146-22165 MS.gene058909:intron 50.0%
CGATTTAGCAAGACGGTTGG+TGG + 57395:22052-22071 None:intergenic 50.0%
CTACAAGCCAGAATTCCCCT+AGG + 57395:22017-22036 None:intergenic 50.0%
CTATTCATGGGATGCCAAGG+TGG - 57395:21963-21982 MS.gene058909:intron 50.0%
GATGTGGATTTGGGGAAGCA+TGG - 57395:23438-23457 MS.gene058909:intron 50.0%
GATTGTCCGGTCTAAATCGG+TGG + 57395:23896-23915 None:intergenic 50.0%
GCCACAGCCATAGGAATACT+TGG - 57395:21928-21947 MS.gene058909:intron 50.0%
GCTAATGCATGGAGATGGGA+GGG + 57395:21583-21602 None:intergenic 50.0%
GCTTAAGGGAGGAAGCTCTT+TGG - 57395:23476-23495 MS.gene058909:CDS 50.0%
GGATCCAACACCACAAGCAT+AGG + 57395:23382-23401 None:intergenic 50.0%
GTGGAAGCAGTCAACGTTTC+AGG + 57395:22234-22253 None:intergenic 50.0%
TGCGTCACGCAATTACTGCA+TGG - 57395:23928-23947 MS.gene058909:intron 50.0%
TGCTAATGCATGGAGATGGG+AGG + 57395:21584-21603 None:intergenic 50.0%
TTGTGGAAAAGGGAGCCTTG+TGG - 57395:23230-23249 MS.gene058909:intron 50.0%
! CCAACATGGCCTTGAGAAGA+TGG + 57395:22149-22168 None:intergenic 50.0%
! CTGCCTTCAGGTTAGCATTG+AGG - 57395:23060-23079 MS.gene058909:intron 50.0%
! CTTGTGGTGTTGGATCCACA+GGG - 57395:23385-23404 MS.gene058909:intron 50.0%
! GCCTTGATGAGTTGGATGAG+TGG - 57395:24399-24418 MS.gene058909:intron 50.0%
! GCTCTAGATTGGTTCTTCCG+TGG + 57395:21197-21216 None:intergenic 50.0%
! GGGTTAGGCTTGAAAGCATG+TGG - 57395:24219-24238 MS.gene058909:CDS 50.0%
! TTGTGGTGTTGGATCCACAG+GGG - 57395:23386-23405 MS.gene058909:intron 50.0%
!! GCATCATTGGCTTGGGTCAA+GGG - 57395:22319-22338 MS.gene058909:CDS 50.0%
!! TCTTGGCCACCGATTTAGAC+CGG - 57395:23887-23906 MS.gene058909:intron 50.0%
!! TGCAAGTGTATGATGGGTGG+GGG - 57395:21895-21914 MS.gene058909:intron 50.0%
!! TGTGGCGCATAGCTCTAGAT+TGG + 57395:21208-21227 None:intergenic 50.0%
AGGTTCACAACCTTCCCCTG+TGG + 57395:23403-23422 None:intergenic 55.0%
CAATTGGAGCATGAGTGGCG+CGG + 57395:21271-21290 None:intergenic 55.0%
CAGCCAACCTAGGGGAATTC+TGG - 57395:22007-22026 MS.gene058909:intron 55.0%
CAGGGATGAGAGAAGCTGCA+TGG + 57395:21346-21365 None:intergenic 55.0%
GATGCTCATGCCACAGCCAT+AGG - 57395:21919-21938 MS.gene058909:intron 55.0%
GCAGCATTTGCAGCCAACCT+AGG - 57395:21997-22016 MS.gene058909:intron 55.0%
! GCTTGTGGTGTTGGATCCAC+AGG - 57395:23384-23403 MS.gene058909:intron 55.0%
!! GGCATCATTGGCTTGGGTCA+AGG - 57395:22318-22337 MS.gene058909:CDS 55.0%
!! TGACCCTTCACTTCTGGAGC+CGG - 57395:23312-23331 MS.gene058909:CDS 55.0%
!! TTCTGGAGCCGGCAAGTATC+AGG - 57395:23323-23342 MS.gene058909:intron 55.0%
!! TTGCCGGCTCCAGAAGTGAA+GGG + 57395:23318-23337 None:intergenic 55.0%
TGCTGAGTGTGGCCAGCCAA+TGG - 57395:24553-24572 MS.gene058909:CDS 60.0%
! GGTGTTGGATCCACAGGGGA+AGG - 57395:23390-23409 MS.gene058909:intron 60.0%
!! CTTGCCGGCTCCAGAAGTGA+AGG + 57395:23319-23338 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
57395 gene 21182 24610 21182 ID=MS.gene058909
57395 mRNA 21182 24610 21182 ID=MS.gene058909.t1;Parent=MS.gene058909
57395 exon 24416 24610 24416 ID=MS.gene058909.t1.exon1;Parent=MS.gene058909.t1
57395 CDS 24416 24610 24416 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 24217 24321 24217 ID=MS.gene058909.t1.exon2;Parent=MS.gene058909.t1
57395 CDS 24217 24321 24217 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 23452 23903 23452 ID=MS.gene058909.t1.exon3;Parent=MS.gene058909.t1
57395 CDS 23452 23903 23452 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 23232 23341 23232 ID=MS.gene058909.t1.exon4;Parent=MS.gene058909.t1
57395 CDS 23232 23341 23232 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 22890 23032 22890 ID=MS.gene058909.t1.exon5;Parent=MS.gene058909.t1
57395 CDS 22890 23032 22890 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 22231 22722 22231 ID=MS.gene058909.t1.exon6;Parent=MS.gene058909.t1
57395 CDS 22231 22722 22231 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
57395 exon 21182 21799 21182 ID=MS.gene058909.t1.exon7;Parent=MS.gene058909.t1
57395 CDS 21182 21799 21182 ID=cds.MS.gene058909.t1;Parent=MS.gene058909.t1
Gene Sequence

>MS.gene058909

ATGGAAATGGTACCACGGAAGAACCAATCTAGAGCTATGCGCCACATGTTTTCGGCATCAGATGATACGGTTATGACAAAACAAATCCGCGCCACTCATGCTCCAATTGAAGAACATGTTGATGTTAGACCTCTACTTAATGTTGTTCAAGACGTTTTTCGCCATGCAGCTTCTCTCATCCCTGACATCATTCAGGTATGTGTATGTATGCATATATTGACGTAGTATCATTATGCTTTTTGGTTGTTAATTAACTATGTGTTTGTGGTTGTTTTGAAATTTTACACAGGGAAAGCAGGTGCAAATGGGTGTCATTAAGGATAATGCCAACGAGTCTGACTTATTTGACGTGCTAGAGATTTCGTATCACGCAATTAACAAAATTTCATGCGAGGTTTCCCTCCCATCTCCATGCATTAGCATGCATATTTAACACTATTTATATAATAAATGATTAAATAAAGTCAAACTACTTTCATATAGATTATAAGCTATTGTCATAAGCTATCTTGGTGAGCTTATGACAATACGCTAAAAACAGTTTATTAACATGCCGTAAATTGTTTCTACAAGCTCTCCCAAATATGAGTGACAATATTGAAAATTGTGTTACAAAAAATGCATTGCCGGCACTAAAAACCGAATATTTTCTAGAACTAGATATGTCAAATTCAAGTTGTTAATGTTTTGATGCATGTTTGTATCAGATATCTTGCAAGTGTATGATGGGTGGGGGAGATGCTCATGCCACAGCCATAGGAATACTTGGAATGTTATCAAGCTATTCATGGGATGCCAAGGTGGTGATAGCATTAGCAGCATTTGCAGCCAACCTAGGGGAATTCTGGCTTGTAGCTCAGCTTTATGCCACCAACCGTCTTGCTAAATCGGTTGCATTGTTGAAGCACATTCATGAAACACTAAATCAAGTTGATGATTTAGGACCTAAATTCGAAGCTGTGAACCATCTTCTCAAGGCCATGTTGGATGTTACTGATTGCATTGTTGAGTTTCATGAGCTTCCTGATCAGTACATTGACCATGAAGCACCTGAAACGTTGACTGCTTCCACTCTTATTCCTAGTGCTGTTTATTGGACGATTAGGAGTATTGTGGCATGTGCATCCCATATTTTCGGCATCATTGGCTTGGGTCAAGGGTACATCTATCTCTATCTTATTCTTAATTCTTTCCTGCACCAACAACAAATATCTTAATGTTTTTTCTTGTTTTTGTATTGTAATATTAACTCTAACATGTTGATTTTAGATACATGACATCAACAACAGAGACATGGGAGCTTTCCAGTTTGACTCAGAAGCTAGACAGCATGAATGGTCACCTTCAAAATCAGCTCGCCATCTGTCGTCAACATTTAGGTAATTAAGGCTTTGATTGCTAAAATATAGCGGATAGCGGATAGAATTGAACTTGTCGAACAAGCCTAAGTCAATTTAGTTACTGGATTCAGTAACTACACATGTGTGTTAATCATGAAGATGAGGAAGAAACACTGTATGGTTTTTCTTTAGGTAAAATTTCTCTAATCTCTATACGTCCAAATATGTTACGATGCAGATGACAACAAACAGAAAGAAGCATTTCAAACACTTCAGCACCTTTTTGAGACATCTCACCAGGATAACATTAAGGTTCTAAAAGCTTTGATTCGCTGCAAGGATGATCCGTTGCCATTGTTTGATGGTTCTACCAAGCAAAGGGTTAGCATAGAATCTGTTGTTTCTTCATTTCACACACAATATATGTGAATCTATATTCTATTGACATCAGCTTTAATCAAGATTTGCTAACAATAACAACAATGCAATCTTACAACAACAATTTCAATAAACTAATCTATAATTCATAATCATTTTTCTGCCTTCAGGTTAGCATTGAGGTGTTGAGGAAGAAAATTGTGTTGCTCTACATAACAGACCTCCACCATATATCTGATCAAGAGGTTGTGATTTTTGAACAAATGTATCAAGAATCGCGCCAAGATTCAACAAGGTTAGAAAGTCAATATGAACTTGTTTGGATTCCAATTGTGGAAAAGGGAGCCTTGTGGACCGAAACAAAACAGAAGTTTGAGAGACTGCAATCAATGATGCCATGGTACTCAGTTTATGACCCTTCACTTCTGGAGCCGGCAAGTATCAGGTACATTAAGGAGGTGTGGCTTTTCAACACAAAGCCTATGCTTGTGGTGTTGGATCCACAGGGGAAGGTTGTGAACCTGAATGCAGTACACATGATGTGGATTTGGGGAAGCATGGCTTATCCTTTCTCTAGCTTAAGGGAGGAAGCTCTTTGGAAAGATGAAACATGGGGACTTGCACTATTGGCAGATACAATTGATCCATTACTCTTTGATTGGGTTAGTCCTATGTTTTTCATTCTCTATATATGAATATGAACATAGCATAACCAAACTAATAAAGTGGCTAACTAGCTATATGTTTATTGTCTCTCTCACCTTTCTCCTTCATCAAATACACGACAGTTATAATAATGACCTCACCGTCCTAAAGATAGACTGATAGGGGATCCATTTAACTTTTGATCTTATTAGTATAATAATTGTTCTTTTGGGATCCAGATTCCATGGGAATTACATGTTTAAATGCGTAGACAATATCATATGTTAATTTGATATCAGACAGCTCAAATCACCGATTCATAAAGTCTGTTATAAACAATCTTCTTGGCCACCGATTTAGACCGGACAATCAAAATTAGCAACTGCGTCACGCAATTACTGCATGGAATATGCTTCCGTTCTTTTGATCTTATTATTCATTGTTTCAGGTAACGGCAGGCAAATACATATGCTTGTATGGAGGGGATGATATGGAATGGATCAGGAAATTCACAAGTGCTGCAAAATCAATGGCAAGAACTCTACAAATTCCACTGGAAATGATGTATGTAGGGAAAAGCAACCCAGGACAGAAAGTTAAAAGAATCAACAAAACCATATATGACGAAAATCTGAGCAACGTACTCGCCGACCCAACAATAATTTGGTTCTTCTGGGTTAGGCTTGAAAGCATGTGGCATTCCAAATTACAACAAAGCAAAACAGTGGAAAATGACCAAATAATGCTAGAAATAATGAGAATCCTAAGCTTTGATAGCAGTGATCTTGGTTGGGCTATAATAAGTCAAGGCACAGTAAGAATGACACAGGGCAAAGGTGACTCGTTTTTAAAGTGCCTTGATGAGTTGGATGAGTGGAAGGGTGATGTGAATGATAAAGGAGTTTTGCCTGCAATGGATGATTACATACAAGGAATCCAACAACCACATCATTGTAACAGGTTAATACTTCCAGGAGTTGATGGAACAATTCCAGACAAGATTGTATGTGCTGAGTGTGGCCAGCCAATGGAAAAGTTCTACATGTATCGATGCTGCAACGAGTGA

Protein sequence

>MS.gene058909.t1

MEMVPRKNQSRAMRHMFSASDDTVMTKQIRATHAPIEEHVDVRPLLNVVQDVFRHAASLIPDIIQGKQVQMGVIKDNANESDLFDVLEISYHAINKISCEISCKCMMGGGDAHATAIGILGMLSSYSWDAKVVIALAAFAANLGEFWLVAQLYATNRLAKSVALLKHIHETLNQVDDLGPKFEAVNHLLKAMLDVTDCIVEFHELPDQYIDHEAPETLTASTLIPSAVYWTIRSIVACASHIFGIIGLGQGYMTSTTETWELSSLTQKLDSMNGHLQNQLAICRQHLDDNKQKEAFQTLQHLFETSHQDNIKVLKALIRCKDDPLPLFDGSTKQRVSIEVLRKKIVLLYITDLHHISDQEVVIFEQMYQESRQDSTRLESQYELVWIPIVEKGALWTETKQKFERLQSMMPWYSVYDPSLLEPASIRYIKEVWLFNTKPMLVVLDPQGKVVNLNAVHMMWIWGSMAYPFSSLREEALWKDETWGLALLADTIDPLLFDWVTAGKYICLYGGDDMEWIRKFTSAAKSMARTLQIPLEMMYVGKSNPGQKVKRINKTIYDENLSNVLADPTIIWFFWVRLESMWHSKLQQSKTVENDQIMLEIMRILSFDSSDLGWAIISQGTVRMTQGKGDSFLKCLDELDEWKGDVNDKGVLPAMDDYIQGIQQPHHCNRLILPGVDGTIPDKIVCAECGQPMEKFYMYRCCNE