AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058912


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058912.t1 MTR_8g089660 98.011 704 14 0 1 704 1 704 0.0 1444
MS.gene058912.t1 MTR_3g075450 52.991 702 316 8 7 704 15 706 0.0 745
MS.gene058912.t1 MTR_7g032660 43.723 693 375 11 20 704 26 711 0.0 570
MS.gene058912.t1 MTR_1g074950 32.521 698 402 20 17 703 23 662 1.70e-105 336
MS.gene058912.t1 MTR_1g074990 31.746 693 413 23 17 703 22 660 3.32e-100 322
MS.gene058912.t1 MTR_1g075095 31.124 694 418 23 17 703 22 662 3.14e-96 311
MS.gene058912.t1 MTR_1g075230 30.914 689 419 21 22 704 26 663 8.34e-95 308
MS.gene058912.t1 MTR_1g075030 30.836 694 420 23 17 703 22 662 3.05e-94 306
MS.gene058912.t1 MTR_1g040360 29.014 710 416 24 20 703 30 677 1.06e-77 263
MS.gene058912.t1 MTR_1g075170 25.301 664 369 25 88 704 84 667 3.09e-47 178
MS.gene058912.t1 MTR_1g075180 27.202 647 372 24 87 704 60 636 1.11e-46 176
MS.gene058912.t1 MTR_1g075153 25.645 620 396 19 101 704 93 663 3.26e-44 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058912.t1 AT3G01680 39.973 728 389 14 1 704 26 729 0.0 540
MS.gene058912.t1 AT3G01670 37.260 730 401 14 5 704 120 822 2.49e-156 473
MS.gene058912.t1 AT3G01670 37.260 730 401 14 5 704 144 846 6.50e-156 473
MS.gene058912.t1 AT1G67790 27.273 704 454 20 13 700 3 664 2.79e-74 253

Find 0 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAGATCAAAAGTTAAA+TGG + 57393:6296-6315 None:intergenic 15.0%
!!! AGTATAATAATTGTTCTTTT+GGG - 57393:6315-6334 MS.gene058912:CDS 15.0%
!!! TAGTATAATAATTGTTCTTT+TGG - 57393:6314-6333 MS.gene058912:CDS 15.0%
!! ATATAGAGAATGAAAAACAT+AGG + 57393:6131-6150 None:intergenic 20.0%
!! ATCTTATTATTCATTGTTTC+AGG - 57393:6531-6550 MS.gene058912:intron 20.0%
!! GAATAATAAGATCAAAAGAA+CGG + 57393:6523-6542 None:intergenic 20.0%
!! TTATAACAGACTTTATGAAT+CGG + 57393:6420-6439 None:intergenic 20.0%
!!! AACATTAAGATATTTGTTGT+TGG + 57393:4943-4962 None:intergenic 20.0%
!!! ATCTAGTTCTAGAAAATATT+CGG + 57393:4384-4403 None:intergenic 20.0%
!!! TCATTATTTCTAGCATTATT+TGG + 57393:6843-6862 None:intergenic 20.0%
!!! TTGTTTTGAAATTTTACACA+GGG - 57393:4010-4029 MS.gene058912:CDS 20.0%
! AATGTTATCAAGCTATTCAT+GGG - 57393:4511-4530 MS.gene058912:intron 25.0%
! AATTAACAAAATTTCATGCG+AGG - 57393:4114-4133 MS.gene058912:CDS 25.0%
! AGAAGAACCAAATTATTGTT+GGG + 57393:6759-6778 None:intergenic 25.0%
! ATTTAAACATGTAATTCCCA+TGG + 57393:6350-6369 None:intergenic 25.0%
! CAATATTGTCACTCATATTT+GGG + 57393:4322-4341 None:intergenic 25.0%
! CTTTGATTGCTAAAATATAG+CGG - 57393:5131-5150 MS.gene058912:CDS 25.0%
! GTTAATTAACTATGTGTTTG+TGG - 57393:3987-4006 MS.gene058912:CDS 25.0%
! TCAATATTGTCACTCATATT+TGG + 57393:4323-4342 None:intergenic 25.0%
! TCTGTTATAAACAATCTTCT+TGG - 57393:6430-6449 MS.gene058912:CDS 25.0%
!! AAAGTCAATATGAACTTGTT+TGG - 57393:5760-5779 MS.gene058912:intron 25.0%
!! TTATTCATTGTTTCAGGTAA+CGG - 57393:6537-6556 MS.gene058912:intron 25.0%
!!! AACAATAATTTGGTTCTTCT+GGG - 57393:6759-6778 MS.gene058912:intron 25.0%
!!! CTAAATCAAGTTGATGATTT+AGG - 57393:4662-4681 MS.gene058912:intron 25.0%
!!! GTTGTTTTGAAATTTTACAC+AGG - 57393:4009-4028 MS.gene058912:CDS 25.0%
!!! TGTTTTGCTTTGTTGTAATT+TGG + 57393:6809-6828 None:intergenic 25.0%
AAATACATATGCTTGTATGG+AGG - 57393:6565-6584 MS.gene058912:intron 30.0%
AATACATATGCTTGTATGGA+GGG - 57393:6566-6585 MS.gene058912:intron 30.0%
ACATCAACATGTTCTTCAAT+TGG + 57393:3847-3866 None:intergenic 30.0%
ATATCTTGCAAGTGTATGAT+GGG - 57393:4449-4468 MS.gene058912:intron 30.0%
ATTAACCTGTTACAATGATG+TGG + 57393:7051-7070 None:intergenic 30.0%
ATTACAACAAAGCAAAACAG+TGG - 57393:6810-6829 MS.gene058912:CDS 30.0%
CAGAAGAACCAAATTATTGT+TGG + 57393:6760-6779 None:intergenic 30.0%
CGTCAACATTTAGGTAATTA+AGG - 57393:5108-5127 MS.gene058912:CDS 30.0%
GAATGTTATCAAGCTATTCA+TGG - 57393:4510-4529 MS.gene058912:intron 30.0%
GAGCTTGTAGAAACAATTTA+CGG + 57393:4298-4317 None:intergenic 30.0%
GCATAACCAAACTAATAAAG+TGG - 57393:6166-6185 MS.gene058912:CDS 30.0%
TAAATATGCATGCTAATGCA+TGG + 57393:4154-4173 None:intergenic 30.0%
TAACATTCCAAGTATTCCTA+TGG + 57393:4498-4517 None:intergenic 30.0%
TCTTGAACAACATTAAGTAG+AGG + 57393:3874-3893 None:intergenic 30.0%
TGATCCATTACTCTTTGATT+GGG - 57393:6100-6119 MS.gene058912:CDS 30.0%
TGTTACAAAAAATGCATTGC+CGG - 57393:4349-4368 MS.gene058912:intron 30.0%
TTAGAACCTTAATGTTATCC+TGG + 57393:5381-5400 None:intergenic 30.0%
TTGATCCATTACTCTTTGAT+TGG - 57393:6099-6118 MS.gene058912:CDS 30.0%
TTTCTAACCTTGTTGAATCT+TGG + 57393:5743-5762 None:intergenic 30.0%
! ACACTGTATGGTTTTTCTTT+AGG - 57393:5252-5271 MS.gene058912:CDS 30.0%
! AGTTAGCCACTTTATTAGTT+TGG + 57393:6175-6194 None:intergenic 30.0%
! CGTAGTATCATTATGCTTTT+TGG - 57393:3962-3981 MS.gene058912:CDS 30.0%
! TACATGTAGAACTTTTCCAT+TGG + 57393:7132-7151 None:intergenic 30.0%
! TCCAGTAACTAAATTGACTT+AGG + 57393:5188-5207 None:intergenic 30.0%
! TCTTTGGAAAGATGAAACAT+GGG - 57393:6052-6071 MS.gene058912:CDS 30.0%
! TTATCCTTTCTCTAGCTTAA+GGG - 57393:6022-6041 MS.gene058912:CDS 30.0%
!! ATAATCATTTTTCTGCCTTC+AGG - 57393:5608-5627 MS.gene058912:intron 30.0%
!! CAACAATAATTTGGTTCTTC+TGG - 57393:6758-6777 MS.gene058912:intron 30.0%
!! TTATTCCTAGTGCTGTTTAT+TGG - 57393:4816-4835 MS.gene058912:CDS 30.0%
!!! AAATATTCGGTTTTTAGTGC+CGG + 57393:4371-4390 None:intergenic 30.0%
!!! AGTTGCTAATTTTGATTGTC+CGG + 57393:6469-6488 None:intergenic 30.0%
!!! ATTCTTTTAACTTTCTGTCC+TGG + 57393:6691-6710 None:intergenic 30.0%
!!! CTCAAACTTCTGTTTTGTTT+CGG + 57393:5817-5836 None:intergenic 30.0%
!!! TTCTTTTAACTTTCTGTCCT+GGG + 57393:6690-6709 None:intergenic 30.0%
AACAACCACATCATTGTAAC+AGG - 57393:7043-7062 MS.gene058912:CDS 35.0%
AACTGTCGTGTATTTGATGA+AGG + 57393:6230-6249 None:intergenic 35.0%
AAGAACTCTACAAATTCCAC+TGG - 57393:6639-6658 MS.gene058912:intron 35.0%
AAGGGTGATGTGAATGATAA+AGG - 57393:6982-7001 MS.gene058912:CDS 35.0%
AAGTATCAGGTACATTAAGG+AGG - 57393:5896-5915 MS.gene058912:intron 35.0%
ACTTGTTTGGATTCCAATTG+TGG - 57393:5773-5792 MS.gene058912:intron 35.0%
AGTACACATGATGTGGATTT+GGG - 57393:5989-6008 MS.gene058912:intron 35.0%
ATACATATGCTTGTATGGAG+GGG - 57393:6567-6586 MS.gene058912:intron 35.0%
ATCTCACCAGGATAACATTA+AGG - 57393:5372-5391 MS.gene058912:intron 35.0%
CAACCTCTTGATCAGATATA+TGG + 57393:5689-5708 None:intergenic 35.0%
CACTGGAAATGATGTATGTA+GGG - 57393:6656-6675 MS.gene058912:intron 35.0%
CATCTGCATCGTAACATATT+TGG + 57393:5303-5322 None:intergenic 35.0%
CTAACCCAATCAAAGAGTAA+TGG + 57393:6107-6126 None:intergenic 35.0%
GAACCAAATTATTGTTGGGT+CGG + 57393:6755-6774 None:intergenic 35.0%
GATATCTTGCAAGTGTATGA+TGG - 57393:4448-4467 MS.gene058912:intron 35.0%
GCAATGGATGATTACATACA+AGG - 57393:7015-7034 MS.gene058912:CDS 35.0%
GCCTAAGTCAATTTAGTTAC+TGG - 57393:5184-5203 MS.gene058912:CDS 35.0%
GCTATTGTCATAAGCTATCT+TGG - 57393:4232-4251 MS.gene058912:CDS 35.0%
GGCAAATACATATGCTTGTA+TGG - 57393:6562-6581 MS.gene058912:intron 35.0%
GTCCTAAAGATAGACTGATA+GGG - 57393:6267-6286 MS.gene058912:CDS 35.0%
GTGTATTTGATGAAGGAGAA+AGG + 57393:6223-6242 None:intergenic 35.0%
GTGTGTTAATCATGAAGATG+AGG - 57393:5224-5243 MS.gene058912:CDS 35.0%
TCCTAAAGATAGACTGATAG+GGG - 57393:6268-6287 MS.gene058912:CDS 35.0%
TGGATTCCAATTGTGGAAAA+GGG - 57393:5780-5799 MS.gene058912:intron 35.0%
TGTAACAGGTTAATACTTCC+AGG - 57393:7057-7076 MS.gene058912:CDS 35.0%
TGTATGTAATCATCCATTGC+AGG + 57393:7015-7034 None:intergenic 35.0%
TGTTACAATGATGTGGTTGT+TGG + 57393:7044-7063 None:intergenic 35.0%
TTAATACTTCCAGGAGTTGA+TGG - 57393:7066-7085 MS.gene058912:CDS 35.0%
TTAATGTACCTGATACTTGC+CGG + 57393:5894-5913 None:intergenic 35.0%
TTGGATTCCAATTGTGGAAA+AGG - 57393:5779-5798 MS.gene058912:intron 35.0%
TTGGTAGAACCATCAAACAA+TGG + 57393:5436-5455 None:intergenic 35.0%
TTTGATTGTCCGGTCTAAAT+CGG + 57393:6459-6478 None:intergenic 35.0%
! AAATTTTACACAGGGAAAGC+AGG - 57393:4018-4037 MS.gene058912:CDS 35.0%
! CTATCAGTCTATCTTTAGGA+CGG + 57393:6268-6287 None:intergenic 35.0%
! CTCTTTGGAAAGATGAAACA+TGG - 57393:6051-6070 MS.gene058912:CDS 35.0%
! CTTATCCTTTCTCTAGCTTA+AGG - 57393:6021-6040 MS.gene058912:CDS 35.0%
! CTTTGGAAAGATGAAACATG+GGG - 57393:6053-6072 MS.gene058912:CDS 35.0%
! GCTCAGATTTTCGTCATATA+TGG + 57393:6722-6741 None:intergenic 35.0%
! TTTAAAGTGCCTTGATGAGT+TGG - 57393:6951-6970 MS.gene058912:intron 35.0%
!! AAGATATTTGTTGTTGGTGC+AGG + 57393:4937-4956 None:intergenic 35.0%
!! TAATTTGGTTCTTCTGGGTT+AGG - 57393:6764-6783 MS.gene058912:intron 35.0%
!! TGCTAAAATATAGCGGATAG+CGG - 57393:5138-5157 MS.gene058912:CDS 35.0%
AACAGCACTAGGAATAAGAG+TGG + 57393:4813-4832 None:intergenic 40.0%
AAGATTGTATGTGCTGAGTG+TGG - 57393:7102-7121 MS.gene058912:CDS 40.0%
ACACATACCTGAATGATGTC+AGG + 57393:3925-3944 None:intergenic 40.0%
ACATCATGTGTACTGCATTC+AGG + 57393:5983-6002 None:intergenic 40.0%
ACCTAAATGTTGACGACAGA+TGG + 57393:5103-5122 None:intergenic 40.0%
AGCCAATGATGCCGAAAATA+TGG + 57393:4871-4890 None:intergenic 40.0%
AGTTTATGACCCTTCACTTC+TGG - 57393:5866-5885 MS.gene058912:CDS 40.0%
ATCGTCCAATAAACAGCACT+AGG + 57393:4824-4843 None:intergenic 40.0%
CACATACCTGAATGATGTCA+GGG + 57393:3924-3943 None:intergenic 40.0%
CAGTACACATGATGTGGATT+TGG - 57393:5988-6007 MS.gene058912:intron 40.0%
CATGTAATTCCCATGGAATC+TGG + 57393:6343-6362 None:intergenic 40.0%
CCACCATATATCTGATCAAG+AGG - 57393:5683-5702 MS.gene058912:intron 40.0%
CCACTGGAAATGATGTATGT+AGG - 57393:6655-6674 MS.gene058912:intron 40.0%
CCTACATACATCATTTCCAG+TGG + 57393:6658-6677 None:intergenic 40.0%
CCTCTTGATCAGATATATGG+TGG + 57393:5686-5705 None:intergenic 40.0%
CGTCCTAAAGATAGACTGAT+AGG - 57393:6266-6285 MS.gene058912:CDS 40.0%
CTTGATCAGATATATGGTGG+AGG + 57393:5683-5702 None:intergenic 40.0%
GAACCATCAAACAATGGCAA+CGG + 57393:5430-5449 None:intergenic 40.0%
GACATCAACAACAGAGACAT+GGG - 57393:5017-5036 MS.gene058912:CDS 40.0%
GATCACTGCTATCAAAGCTT+AGG + 57393:6870-6889 None:intergenic 40.0%
GATGAGGAAGAAACACTGTA+TGG - 57393:5240-5259 MS.gene058912:CDS 40.0%
GCAATCAGTAACATCCAACA+TGG + 57393:4723-4742 None:intergenic 40.0%
GCCAATGATGCCGAAAATAT+GGG + 57393:4870-4889 None:intergenic 40.0%
GGCAAGTATCAGGTACATTA+AGG - 57393:5893-5912 MS.gene058912:intron 40.0%
GGTTGGGCTATAATAAGTCA+AGG - 57393:6892-6911 MS.gene058912:intron 40.0%
GTACACATGATGTGGATTTG+GGG - 57393:5990-6009 MS.gene058912:intron 40.0%
GTCAAATAAGTCAGACTCGT+TGG + 57393:4071-4090 None:intergenic 40.0%
TCAGCACATACAATCTTGTC+TGG + 57393:7099-7118 None:intergenic 40.0%
TCCCCTATCAGTCTATCTTT+AGG + 57393:6272-6291 None:intergenic 40.0%
TGAATGCAGTACACATGATG+TGG - 57393:5982-6001 MS.gene058912:intron 40.0%
TGACATCAACAACAGAGACA+TGG - 57393:5016-5035 MS.gene058912:CDS 40.0%
TGATAGCAGTGATCTTGGTT+GGG - 57393:6876-6895 MS.gene058912:intron 40.0%
TGGTTCACAGCTTCGAATTT+AGG + 57393:4689-4708 None:intergenic 40.0%
TTCTATGCTAACCCTTTGCT+TGG + 57393:5455-5474 None:intergenic 40.0%
TTCTTCAATTGGAGCATGAG+TGG + 57393:3836-3855 None:intergenic 40.0%
! AAAAGCTTTGATTCGCTGCA+AGG - 57393:5399-5418 MS.gene058912:intron 40.0%
! AGCTTTGATAGCAGTGATCT+TGG - 57393:6871-6890 MS.gene058912:intron 40.0%
! ATGCAACCGATTTAGCAAGA+CGG + 57393:4619-4638 None:intergenic 40.0%
! CACAAGTGCTGCAAAATCAA+TGG - 57393:6615-6634 MS.gene058912:intron 40.0%
! GCATGTGCATCCCATATTTT+CGG - 57393:4857-4876 MS.gene058912:CDS 40.0%
! GTTTTCGGCATCAGATGATA+CGG - 57393:3789-3808 MS.gene058912:CDS 40.0%
! TAAAGGAGTTTTGCCTGCAA+TGG - 57393:6999-7018 MS.gene058912:CDS 40.0%
! TCATGGTCAATGTACTGATC+AGG + 57393:4767-4786 None:intergenic 40.0%
! TCCCATATTTTCGGCATCAT+TGG - 57393:4866-4885 MS.gene058912:CDS 40.0%
! TGATGGTTCTACCAAGCAAA+GGG - 57393:5441-5460 MS.gene058912:intron 40.0%
! TGTAGAACTTTTCCATTGGC+TGG + 57393:7128-7147 None:intergenic 40.0%
! TTGATAGCAGTGATCTTGGT+TGG - 57393:6875-6894 MS.gene058912:intron 40.0%
! TTGATGGTTCTACCAAGCAA+AGG - 57393:5440-5459 MS.gene058912:intron 40.0%
!! GTGCTGTTTATTGGACGATT+AGG - 57393:4825-4844 MS.gene058912:CDS 40.0%
!! TATTTTCGGCATCATTGGCT+TGG - 57393:4871-4890 MS.gene058912:CDS 40.0%
!! TTGGACGATTAGGAGTATTG+TGG - 57393:4835-4854 MS.gene058912:CDS 40.0%
!!! ATTTTCGGCATCATTGGCTT+GGG - 57393:4872-4891 MS.gene058912:CDS 40.0%
!!! TTTTGGGATCCAGATTCCAT+GGG - 57393:6331-6350 MS.gene058912:CDS 40.0%
AAAGCCTATGCTTGTGGTGT+TGG - 57393:5935-5954 MS.gene058912:intron 45.0%
AACATGGGGACTTGCACTAT+TGG - 57393:6067-6086 MS.gene058912:CDS 45.0%
AAGCTATTCATGGGATGCCA+AGG - 57393:4520-4539 MS.gene058912:intron 45.0%
AATCGCGCCAAGATTCAACA+AGG - 57393:5733-5752 MS.gene058912:intron 45.0%
ACACCTCAATGCTAACCTGA+AGG + 57393:5626-5645 None:intergenic 45.0%
AGCTGTGAACCATCTTCTCA+AGG - 57393:4697-4716 MS.gene058912:intron 45.0%
AGGCACAGTAAGAATGACAC+AGG - 57393:6912-6931 MS.gene058912:intron 45.0%
ATGGAGGGGATGATATGGAA+TGG - 57393:6581-6600 MS.gene058912:intron 45.0%
CAACACAAAGCCTATGCTTG+TGG - 57393:5929-5948 MS.gene058912:intron 45.0%
CACCAACCGTCTTGCTAAAT+CGG - 57393:4610-4629 MS.gene058912:intron 45.0%
CAGAAGCTAGACAGCATGAA+TGG - 57393:5057-5076 MS.gene058912:CDS 45.0%
CATCTGATGCCGAAAACATG+TGG + 57393:3786-3805 None:intergenic 45.0%
CCTGGTGAGATGTCTCAAAA+AGG + 57393:5363-5382 None:intergenic 45.0%
CTTGTATGGAGGGGATGATA+TGG - 57393:6576-6595 MS.gene058912:intron 45.0%
GACTGCAATCAATGATGCCA+TGG - 57393:5838-5857 MS.gene058912:CDS 45.0%
GATCCGTTGCCATTGTTTGA+TGG - 57393:5424-5443 MS.gene058912:intron 45.0%
GCATGCTAATGCATGGAGAT+GGG + 57393:4147-4166 None:intergenic 45.0%
GCCATCTGTCGTCAACATTT+AGG - 57393:5099-5118 MS.gene058912:CDS 45.0%
GGAATTGTTCCATCAACTCC+TGG + 57393:7078-7097 None:intergenic 45.0%
GGCACAGTAAGAATGACACA+GGG - 57393:6913-6932 MS.gene058912:intron 45.0%
GGGATGATATGGAATGGATC+AGG - 57393:6587-6606 MS.gene058912:intron 45.0%
GGGTCATAAACTGAGTACCA+TGG + 57393:5858-5877 None:intergenic 45.0%
GTAAGAATGACACAGGGCAA+AGG - 57393:6919-6938 MS.gene058912:intron 45.0%
TATGTAGGGAAAAGCAACCC+AGG - 57393:6670-6689 MS.gene058912:intron 45.0%
TCAGGTACATTAAGGAGGTG+TGG - 57393:5901-5920 MS.gene058912:intron 45.0%
TCCAAGTATTCCTATGGCTG+TGG + 57393:4492-4511 None:intergenic 45.0%
TCCACTCATCCAACTCATCA+AGG + 57393:6963-6982 None:intergenic 45.0%
TCCTCCCTTAAGCTAGAGAA+AGG + 57393:6029-6048 None:intergenic 45.0%
TCGCCGACCCAACAATAATT+TGG - 57393:6749-6768 MS.gene058912:intron 45.0%
TCTCATCCCTGACATCATTC+AGG - 57393:3915-3934 MS.gene058912:CDS 45.0%
TGCATGCTAATGCATGGAGA+TGG + 57393:4148-4167 None:intergenic 45.0%
TGCTAATGCTATCACCACCT+TGG + 57393:4540-4559 None:intergenic 45.0%
! AACCGATTTAGCAAGACGGT+TGG + 57393:4615-4634 None:intergenic 45.0%
! AAGGCTCCCTTTTCCACAAT+TGG + 57393:5789-5808 None:intergenic 45.0%
! AGCTATGCGCCACATGTTTT+CGG - 57393:3774-3793 MS.gene058912:CDS 45.0%
! GATGAGTTGGATGAGTGGAA+GGG - 57393:6964-6983 MS.gene058912:intron 45.0%
! GTCTAGCTTCTGAGTCAAAC+TGG + 57393:5049-5068 None:intergenic 45.0%
! TCAACGTTTCAGGTGCTTCA+TGG + 57393:4784-4803 None:intergenic 45.0%
! TCATTGTTTCAGGTAACGGC+AGG - 57393:6541-6560 MS.gene058912:intron 45.0%
! TCCTTTCTCTAGCTTAAGGG+AGG - 57393:6025-6044 MS.gene058912:CDS 45.0%
! TCTTGCAAGTGTATGATGGG+TGG - 57393:4452-4471 MS.gene058912:intron 45.0%
! TGATGAGTTGGATGAGTGGA+AGG - 57393:6963-6982 MS.gene058912:intron 45.0%
!! AGATGGCGAGCTGATTTTGA+AGG + 57393:5086-5105 None:intergenic 45.0%
!! AGGTTAGCATTGAGGTGTTG+AGG - 57393:5628-5647 MS.gene058912:intron 45.0%
!! AGTCTATCTTTAGGACGGTG+AGG + 57393:6263-6282 None:intergenic 45.0%
!! CTTGCAAGTGTATGATGGGT+GGG - 57393:4453-4472 MS.gene058912:intron 45.0%
!! GGTGCAAATGGGTGTCATTA+AGG - 57393:4039-4058 MS.gene058912:CDS 45.0%
!! TTGCAAGTGTATGATGGGTG+GGG - 57393:4454-4473 MS.gene058912:intron 45.0%
!!! CCTTTTTGAGACATCTCACC+AGG - 57393:5360-5379 MS.gene058912:intron 45.0%
!!! CTGTTTTGTTTCGGTCCACA+AGG + 57393:5808-5827 None:intergenic 45.0%
!!! CTTTTGGGATCCAGATTCCA+TGG - 57393:6330-6349 MS.gene058912:CDS 45.0%
AAGCCAGAATTCCCCTAGGT+TGG + 57393:4573-4592 None:intergenic 50.0%
ACAGGGAAAGCAGGTGCAAA+TGG - 57393:4027-4046 MS.gene058912:CDS 50.0%
AGCATTTGCAGCCAACCTAG+GGG - 57393:4559-4578 MS.gene058912:intron 50.0%
CAGCATTTGCAGCCAACCTA+GGG - 57393:4558-4577 MS.gene058912:intron 50.0%
CAGGGAAAGCAGGTGCAAAT+GGG - 57393:4028-4047 MS.gene058912:CDS 50.0%
CCATCTTCTCAAGGCCATGT+TGG - 57393:4706-4725 MS.gene058912:intron 50.0%
CGATTTAGCAAGACGGTTGG+TGG + 57393:4612-4631 None:intergenic 50.0%
CTACAAGCCAGAATTCCCCT+AGG + 57393:4577-4596 None:intergenic 50.0%
CTATTCATGGGATGCCAAGG+TGG - 57393:4523-4542 MS.gene058912:intron 50.0%
GATGTGGATTTGGGGAAGCA+TGG - 57393:5998-6017 MS.gene058912:intron 50.0%
GATTGTCCGGTCTAAATCGG+TGG + 57393:6456-6475 None:intergenic 50.0%
GCCACAGCCATAGGAATACT+TGG - 57393:4488-4507 MS.gene058912:intron 50.0%
GCTAATGCATGGAGATGGGA+GGG + 57393:4143-4162 None:intergenic 50.0%
GCTTAAGGGAGGAAGCTCTT+TGG - 57393:6036-6055 MS.gene058912:CDS 50.0%
GGATCCAACACCACAAGCAT+AGG + 57393:5942-5961 None:intergenic 50.0%
GTGGAAGCAGTCAACGTTTC+AGG + 57393:4794-4813 None:intergenic 50.0%
TGCGTCACGCAATTACTGCA+TGG - 57393:6488-6507 MS.gene058912:intron 50.0%
TGCTAATGCATGGAGATGGG+AGG + 57393:4144-4163 None:intergenic 50.0%
TTGTGGAAAAGGGAGCCTTG+TGG - 57393:5790-5809 MS.gene058912:intron 50.0%
! CCAACATGGCCTTGAGAAGA+TGG + 57393:4709-4728 None:intergenic 50.0%
! CTGCCTTCAGGTTAGCATTG+AGG - 57393:5620-5639 MS.gene058912:intron 50.0%
! CTTGTGGTGTTGGATCCACA+GGG - 57393:5945-5964 MS.gene058912:intron 50.0%
! GCCTTGATGAGTTGGATGAG+TGG - 57393:6959-6978 MS.gene058912:intron 50.0%
! GCTCTAGATTGGTTCTTCCG+TGG + 57393:3757-3776 None:intergenic 50.0%
! GGGTTAGGCTTGAAAGCATG+TGG - 57393:6779-6798 MS.gene058912:CDS 50.0%
! TTGTGGTGTTGGATCCACAG+GGG - 57393:5946-5965 MS.gene058912:intron 50.0%
!! GCATCATTGGCTTGGGTCAA+GGG - 57393:4879-4898 MS.gene058912:CDS 50.0%
!! TCTTGGCCACCGATTTAGAC+CGG - 57393:6447-6466 MS.gene058912:intron 50.0%
!! TGCAAGTGTATGATGGGTGG+GGG - 57393:4455-4474 MS.gene058912:intron 50.0%
!! TGTGGCGCATAGCTCTAGAT+TGG + 57393:3768-3787 None:intergenic 50.0%
AGGTTCACAACCTTCCCCTG+TGG + 57393:5963-5982 None:intergenic 55.0%
CAATTGGAGCATGAGTGGCG+CGG + 57393:3831-3850 None:intergenic 55.0%
CAGCCAACCTAGGGGAATTC+TGG - 57393:4567-4586 MS.gene058912:intron 55.0%
CAGGGATGAGAGAAGCTGCA+TGG + 57393:3906-3925 None:intergenic 55.0%
GATGCTCATGCCACAGCCAT+AGG - 57393:4479-4498 MS.gene058912:intron 55.0%
GCAGCATTTGCAGCCAACCT+AGG - 57393:4557-4576 MS.gene058912:intron 55.0%
! GCTTGTGGTGTTGGATCCAC+AGG - 57393:5944-5963 MS.gene058912:intron 55.0%
!! GGCATCATTGGCTTGGGTCA+AGG - 57393:4878-4897 MS.gene058912:CDS 55.0%
!! TGACCCTTCACTTCTGGAGC+CGG - 57393:5872-5891 MS.gene058912:CDS 55.0%
!! TTCTGGAGCCGGCAAGTATC+AGG - 57393:5883-5902 MS.gene058912:intron 55.0%
!! TTGCCGGCTCCAGAAGTGAA+GGG + 57393:5878-5897 None:intergenic 55.0%
TGCTGAGTGTGGCCAGCCAA+TGG - 57393:7113-7132 MS.gene058912:CDS 60.0%
! GGTGTTGGATCCACAGGGGA+AGG - 57393:5950-5969 MS.gene058912:intron 60.0%
!! CTTGCCGGCTCCAGAAGTGA+AGG + 57393:5879-5898 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
57393 gene 3742 7170 3742 ID=MS.gene058912
57393 mRNA 3742 7170 3742 ID=MS.gene058912.t1;Parent=MS.gene058912
57393 exon 6976 7170 6976 ID=MS.gene058912.t1.exon1;Parent=MS.gene058912.t1
57393 CDS 6976 7170 6976 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 6777 6881 6777 ID=MS.gene058912.t1.exon2;Parent=MS.gene058912.t1
57393 CDS 6777 6881 6777 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 6012 6463 6012 ID=MS.gene058912.t1.exon3;Parent=MS.gene058912.t1
57393 CDS 6012 6463 6012 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 5792 5901 5792 ID=MS.gene058912.t1.exon4;Parent=MS.gene058912.t1
57393 CDS 5792 5901 5792 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 5450 5592 5450 ID=MS.gene058912.t1.exon5;Parent=MS.gene058912.t1
57393 CDS 5450 5592 5450 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 4791 5282 4791 ID=MS.gene058912.t1.exon6;Parent=MS.gene058912.t1
57393 CDS 4791 5282 4791 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
57393 exon 3742 4359 3742 ID=MS.gene058912.t1.exon7;Parent=MS.gene058912.t1
57393 CDS 3742 4359 3742 ID=cds.MS.gene058912.t1;Parent=MS.gene058912.t1
Gene Sequence

>MS.gene058912

ATGGAAATGGTACCACGGAAGAACCAATCTAGAGCTATGCGCCACATGTTTTCGGCATCAGATGATACGGTTATGACAAAACAAATCCGCGCCACTCATGCTCCAATTGAAGAACATGTTGATGTTAGACCTCTACTTAATGTTGTTCAAGACGTTTTTCGCCATGCAGCTTCTCTCATCCCTGACATCATTCAGGTATGTGTATGTATGCATATATTGACGTAGTATCATTATGCTTTTTGGTTGTTAATTAACTATGTGTTTGTGGTTGTTTTGAAATTTTACACAGGGAAAGCAGGTGCAAATGGGTGTCATTAAGGATAATGCCAACGAGTCTGACTTATTTGACGTGCTAGAGATTTCGTATCACGCAATTAACAAAATTTCATGCGAGGTTTCCCTCCCATCTCCATGCATTAGCATGCATATTTAACACTATTTATATAATAAATGATTAAATAAAGTCAAACTACTTTCATATAGATTATAAGCTATTGTCATAAGCTATCTTGGTGAGCTTATGACAATACGCTAAAAACAGTTTATTAACATGCCGTAAATTGTTTCTACAAGCTCTCCCAAATATGAGTGACAATATTGAAAATTGTGTTACAAAAAATGCATTGCCGGCACTAAAAACCGAATATTTTCTAGAACTAGATATGTCAAATTCAAGTTGTTAATGTTTTGATGCATGTTTGTATCAGATATCTTGCAAGTGTATGATGGGTGGGGGAGATGCTCATGCCACAGCCATAGGAATACTTGGAATGTTATCAAGCTATTCATGGGATGCCAAGGTGGTGATAGCATTAGCAGCATTTGCAGCCAACCTAGGGGAATTCTGGCTTGTAGCTCAGCTTTATGCCACCAACCGTCTTGCTAAATCGGTTGCATTGTTGAAGCACATTCATGAAACACTAAATCAAGTTGATGATTTAGGACCTAAATTCGAAGCTGTGAACCATCTTCTCAAGGCCATGTTGGATGTTACTGATTGCATTGTTGAGTTTCATGAGCTTCCTGATCAGTACATTGACCATGAAGCACCTGAAACGTTGACTGCTTCCACTCTTATTCCTAGTGCTGTTTATTGGACGATTAGGAGTATTGTGGCATGTGCATCCCATATTTTCGGCATCATTGGCTTGGGTCAAGGGTACATCTATCTCTATCTTATTCTTAATTCTTTCCTGCACCAACAACAAATATCTTAATGTTTTTTCTTGTTTTTGTATTGTAATATTAACTCTAACATGTTGATTTTAGATACATGACATCAACAACAGAGACATGGGAGCTTTCCAGTTTGACTCAGAAGCTAGACAGCATGAATGGTCACCTTCAAAATCAGCTCGCCATCTGTCGTCAACATTTAGGTAATTAAGGCTTTGATTGCTAAAATATAGCGGATAGCGGATAGAATTGAACTTGTCGAACAAGCCTAAGTCAATTTAGTTACTGGATTCAGTAACTACACATGTGTGTTAATCATGAAGATGAGGAAGAAACACTGTATGGTTTTTCTTTAGGTAAAATTTCTCTAATCTCTATACGTCCAAATATGTTACGATGCAGATGACAACAAACAGAAAGAAGCATTTCAAACACTTCAGCACCTTTTTGAGACATCTCACCAGGATAACATTAAGGTTCTAAAAGCTTTGATTCGCTGCAAGGATGATCCGTTGCCATTGTTTGATGGTTCTACCAAGCAAAGGGTTAGCATAGAATCTGTTGTTTCTTCATTTCACACACAATATATGTGAATCTATATTCTATTGACATCAGCTTTAATCAAGATTTGCTAACAATAACAACAATGCAATCTTACAACAACAATTTCAATAAACTAATCTATAATTCATAATCATTTTTCTGCCTTCAGGTTAGCATTGAGGTGTTGAGGAAGAAAATTGTGTTGCTCTACATAACAGACCTCCACCATATATCTGATCAAGAGGTTGTGATTTTTGAACAAATGTATCAAGAATCGCGCCAAGATTCAACAAGGTTAGAAAGTCAATATGAACTTGTTTGGATTCCAATTGTGGAAAAGGGAGCCTTGTGGACCGAAACAAAACAGAAGTTTGAGAGACTGCAATCAATGATGCCATGGTACTCAGTTTATGACCCTTCACTTCTGGAGCCGGCAAGTATCAGGTACATTAAGGAGGTGTGGCTTTTCAACACAAAGCCTATGCTTGTGGTGTTGGATCCACAGGGGAAGGTTGTGAACCTGAATGCAGTACACATGATGTGGATTTGGGGAAGCATGGCTTATCCTTTCTCTAGCTTAAGGGAGGAAGCTCTTTGGAAAGATGAAACATGGGGACTTGCACTATTGGCAGATACAATTGATCCATTACTCTTTGATTGGGTTAGTCCTATGTTTTTCATTCTCTATATATGAATATGAACATAGCATAACCAAACTAATAAAGTGGCTAACTAGCTATATGTTTATTGTCTCTCTCACCTTTCTCCTTCATCAAATACACGACAGTTATAATAATGACCTCACCGTCCTAAAGATAGACTGATAGGGGATCCATTTAACTTTTGATCTTATTAGTATAATAATTGTTCTTTTGGGATCCAGATTCCATGGGAATTACATGTTTAAATGCGTAGACAATATCATATGTTAATTTGATATCAGACAGCTCAAATCACCGATTCATAAAGTCTGTTATAAACAATCTTCTTGGCCACCGATTTAGACCGGACAATCAAAATTAGCAACTGCGTCACGCAATTACTGCATGGAATATGCTTCCGTTCTTTTGATCTTATTATTCATTGTTTCAGGTAACGGCAGGCAAATACATATGCTTGTATGGAGGGGATGATATGGAATGGATCAGGAAATTCACAAGTGCTGCAAAATCAATGGCAAGAACTCTACAAATTCCACTGGAAATGATGTATGTAGGGAAAAGCAACCCAGGACAGAAAGTTAAAAGAATCAACAAAACCATATATGACGAAAATCTGAGCAACGTACTCGCCGACCCAACAATAATTTGGTTCTTCTGGGTTAGGCTTGAAAGCATGTGGCATTCCAAATTACAACAAAGCAAAACAGTGGAAAATGACCAAATAATGCTAGAAATAATGAGAATCCTAAGCTTTGATAGCAGTGATCTTGGTTGGGCTATAATAAGTCAAGGCACAGTAAGAATGACACAGGGCAAAGGTGACTCGTTTTTAAAGTGCCTTGATGAGTTGGATGAGTGGAAGGGTGATGTGAATGATAAAGGAGTTTTGCCTGCAATGGATGATTACATACAAGGAATCCAACAACCACATCATTGTAACAGGTTAATACTTCCAGGAGTTGATGGAACAATTCCAGACAAGATTGTATGTGCTGAGTGTGGCCAGCCAATGGAAAAGTTCTACATGTATCGATGCTGCAACGAGTGA

Protein sequence

>MS.gene058912.t1

MEMVPRKNQSRAMRHMFSASDDTVMTKQIRATHAPIEEHVDVRPLLNVVQDVFRHAASLIPDIIQGKQVQMGVIKDNANESDLFDVLEISYHAINKISCEISCKCMMGGGDAHATAIGILGMLSSYSWDAKVVIALAAFAANLGEFWLVAQLYATNRLAKSVALLKHIHETLNQVDDLGPKFEAVNHLLKAMLDVTDCIVEFHELPDQYIDHEAPETLTASTLIPSAVYWTIRSIVACASHIFGIIGLGQGYMTSTTETWELSSLTQKLDSMNGHLQNQLAICRQHLDDNKQKEAFQTLQHLFETSHQDNIKVLKALIRCKDDPLPLFDGSTKQRVSIEVLRKKIVLLYITDLHHISDQEVVIFEQMYQESRQDSTRLESQYELVWIPIVEKGALWTETKQKFERLQSMMPWYSVYDPSLLEPASIRYIKEVWLFNTKPMLVVLDPQGKVVNLNAVHMMWIWGSMAYPFSSLREEALWKDETWGLALLADTIDPLLFDWVTAGKYICLYGGDDMEWIRKFTSAAKSMARTLQIPLEMMYVGKSNPGQKVKRINKTIYDENLSNVLADPTIIWFFWVRLESMWHSKLQQSKTVENDQIMLEIMRILSFDSSDLGWAIISQGTVRMTQGKGDSFLKCLDELDEWKGDVNDKGVLPAMDDYIQGIQQPHHCNRLILPGVDGTIPDKIVCAECGQPMEKFYMYRCCNE