Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09982.t1 | XP_018459315.1 | 46.8 | 340 | 156 | 6 | 1 | 338 | 1 | 317 | 7.00E-66 | 261.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09982.t1 | A0A2N9I863 | 41.5 | 354 | 173 | 8 | 1 | 339 | 1 | 335 | 9.9e-62 | 246.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene09982 | 0.82357 | 1.29E-53 | -1.69E-46 |
MS.gene050226 | MS.gene09982 | 0.812124 | 4.96E-51 | -1.69E-46 |
MS.gene050227 | MS.gene09982 | 0.813876 | 2.05E-51 | -1.69E-46 |
MS.gene050228 | MS.gene09982 | 0.827557 | 1.47E-54 | -1.69E-46 |
MS.gene05468 | MS.gene09982 | 0.80494 | 1.70E-49 | -1.69E-46 |
MS.gene055701 | MS.gene09982 | 0.818623 | 1.78E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09982.t1 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 5.14e-31 | 115 |
MS.gene09982.t1 | MTR_4g037355 | 40.441 | 136 | 61 | 4 | 155 | 290 | 1 | 116 | 1.16e-21 | 89.7 |
MS.gene09982.t1 | MTR_5g061150 | 35.354 | 99 | 64 | 0 | 52 | 150 | 38 | 136 | 4.20e-18 | 80.1 |
MS.gene09982.t1 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 7.91e-18 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 61 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATCAATGGAACAAATTA+AGG | 0.196151 | 1.4:+72185229 | MS.gene09982:CDS |
AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 1.4:+72185209 | MS.gene09982:CDS |
AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 1.4:-72185525 | None:intergenic |
CAAAAGATCCCAAGATCTTA+TGG | 0.237847 | 1.4:+72185151 | MS.gene09982:CDS |
GATTCTTGAGGGAGAAGATT+TGG | 0.253340 | 1.4:+72185032 | MS.gene09982:CDS |
GACAAAATTAAGGCAAGATT+TGG | 0.257188 | 1.4:+72185174 | MS.gene09982:CDS |
CTCAATTAAGTTGTTGTTCC+AGG | 0.274617 | 1.4:-72184983 | None:intergenic |
CACGACCTCCACCACGAAAA+TGG | 0.277262 | 1.4:-72185641 | None:intergenic |
GATCTTATGGGACAAAATTA+AGG | 0.310971 | 1.4:+72185164 | MS.gene09982:CDS |
ATTTACTGAATACTCTGATT+TGG | 0.313227 | 1.4:+72185419 | MS.gene09982:CDS |
ATTCTTGAGGGAGAAGATTT+GGG | 0.333151 | 1.4:+72185033 | MS.gene09982:CDS |
AGACAGGTAGTGTCATTCTT+TGG | 0.342502 | 1.4:-72185897 | None:intergenic |
GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 1.4:+72185053 | MS.gene09982:CDS |
GAAGAGGTTATATGAATTAC+AGG | 0.363099 | 1.4:+72185664 | MS.gene09982:CDS |
GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 1.4:-72185740 | None:intergenic |
CATAGCCACCACGTCCTCTT+TGG | 0.374275 | 1.4:-72185575 | None:intergenic |
CGTGGTGGCTATGCTCGTTT+TGG | 0.395091 | 1.4:+72185585 | MS.gene09982:CDS |
ACAAAATTAAGGCAAGATTT+GGG | 0.416566 | 1.4:+72185175 | MS.gene09982:CDS |
TATAACTGAAAAGGAAAAGT+TGG | 0.422757 | 1.4:+72185332 | MS.gene09982:CDS |
TGCCCTCATTAATGGATCAA+TGG | 0.432677 | 1.4:+72185217 | MS.gene09982:CDS |
CGTGGTGGAGGTCGTGGAAG+AGG | 0.449888 | 1.4:+72185648 | MS.gene09982:CDS |
TCCTGCATGCTTTAGCCCAA+TGG | 0.457473 | 1.4:-72185797 | None:intergenic |
AAAAGATCCCAAGATCTTAT+GGG | 0.458748 | 1.4:+72185152 | MS.gene09982:CDS |
AACCATCAGTTGCGTCCTAC+AGG | 0.459311 | 1.4:+72185489 | MS.gene09982:CDS |
TGGCAAAACTATAACTGAAA+AGG | 0.467052 | 1.4:+72185323 | MS.gene09982:CDS |
ATCTGTGGATGGAAAGGAAA+GGG | 0.491819 | 1.4:+72185851 | MS.gene09982:CDS |
ATCAAGCACCACATTGATGA+TGG | 0.492315 | 1.4:+72185105 | MS.gene09982:CDS |
TGTTATAGATGCGGAAAGAA+AGG | 0.495634 | 1.4:+72185774 | MS.gene09982:CDS |
CTGGCGACAACTACATAACC+TGG | 0.502097 | 1.4:+72184965 | MS.gene09982:CDS |
GTTCCATTGATCCATTAATG+AGG | 0.509644 | 1.4:-72185220 | None:intergenic |
ATGCGGAAAGAAAGGCCATT+GGG | 0.516896 | 1.4:+72185782 | MS.gene09982:CDS |
TTTGATTGGTCATATTTGAG+AGG | 0.522357 | 1.4:-72185687 | None:intergenic |
CAAAGAATCTGTGGATGGAA+AGG | 0.532926 | 1.4:+72185845 | MS.gene09982:CDS |
TTCCATTGATCCATTAATGA+GGG | 0.533283 | 1.4:-72185219 | None:intergenic |
CGTGGACGAGGTAGAAATCA+TGG | 0.535808 | 1.4:+72185612 | MS.gene09982:CDS |
GGACTCGATAAGATTCTTGA+GGG | 0.539399 | 1.4:+72185021 | MS.gene09982:CDS |
GCCATTGGGCTAAAGCATGC+AGG | 0.539769 | 1.4:+72185796 | MS.gene09982:CDS |
CCCTCTAGAAATCATGATGA+TGG | 0.541875 | 1.4:+72185750 | MS.gene09982:CDS |
TTCCTGTAGGACGCAACTGA+TGG | 0.562606 | 1.4:-72185491 | None:intergenic |
AAAATCAGCAGCCTCAAGAC+AGG | 0.562896 | 1.4:-72185913 | None:intergenic |
AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 1.4:+72184999 | MS.gene09982:CDS |
ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 1.4:+72185000 | MS.gene09982:CDS |
TTTGGTTGCAGCCCTTCTAG+TGG | 0.582793 | 1.4:+72185437 | MS.gene09982:CDS |
GATGCGGAAAGAAAGGCCAT+TGG | 0.583841 | 1.4:+72185781 | MS.gene09982:CDS |
TTGTGCAATAATTTGATGCA+TGG | 0.588693 | 1.4:-72185289 | None:intergenic |
TAAAAGATACAAAGAATCTG+TGG | 0.594054 | 1.4:+72185836 | MS.gene09982:CDS |
AGATACAAAGAATCTGTGGA+TGG | 0.602731 | 1.4:+72185840 | MS.gene09982:CDS |
GGGACTCGATAAGATTCTTG+AGG | 0.606176 | 1.4:+72185020 | MS.gene09982:CDS |
ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 1.4:-72185538 | None:intergenic |
GCAATATCACTTGAGATGCA+TGG | 0.608661 | 1.4:-72185374 | None:intergenic |
TATAATCGCCAAAGAGGACG+TGG | 0.608957 | 1.4:+72185567 | MS.gene09982:CDS |
ACCATCATCATGATTTCTAG+AGG | 0.616492 | 1.4:-72185751 | None:intergenic |
GGATACGACATTGTTCCTGT+AGG | 0.627452 | 1.4:-72185504 | None:intergenic |
GGTGGTTATAATCGCCAAAG+AGG | 0.642086 | 1.4:+72185561 | MS.gene09982:CDS |
CCATCATCATGATTTCTAGA+GGG | 0.647682 | 1.4:-72185750 | None:intergenic |
GAATGACACTACCTGTCTTG+AGG | 0.649563 | 1.4:+72185902 | MS.gene09982:CDS |
AATCTGTGGATGGAAAGGAA+AGG | 0.653361 | 1.4:+72185850 | MS.gene09982:CDS |
GATGATGGTTGTTATAGATG+CGG | 0.696569 | 1.4:+72185765 | MS.gene09982:CDS |
AATCGCCAAAGAGGACGTGG+TGG | 0.698905 | 1.4:+72185570 | MS.gene09982:CDS |
TTTGTAATCCATCATCAATG+TGG | 0.715751 | 1.4:-72185113 | None:intergenic |
AGATTTGGGAGATGTCCCAG+AGG | 0.741186 | 1.4:+72185047 | MS.gene09982:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAAAATTTTAAGCATAAC+TGG | + | chr1.4:72184946-72184965 | MS.gene09982:CDS | 20.0% |
! | ACAAAATTAAGGCAAGATTT+GGG | + | chr1.4:72185175-72185194 | MS.gene09982:CDS | 25.0% |
! | ATTTACTGAATACTCTGATT+TGG | + | chr1.4:72185419-72185438 | MS.gene09982:CDS | 25.0% |
! | CAATCAAACAAAAATCATCA+GGG | + | chr1.4:72185702-72185721 | MS.gene09982:CDS | 25.0% |
! | TAAAAGATACAAAGAATCTG+TGG | + | chr1.4:72185836-72185855 | MS.gene09982:CDS | 25.0% |
! | TATAACTGAAAAGGAAAAGT+TGG | + | chr1.4:72185332-72185351 | MS.gene09982:CDS | 25.0% |
!! | ATTGCACAATTAGAATTTTG+TGG | + | chr1.4:72185303-72185322 | MS.gene09982:CDS | 25.0% |
!! | TATCTTTTACATAGATACTC+TGG | - | chr1.4:72185825-72185844 | None:intergenic | 25.0% |
!!! | CAACAACAGTTTTATAATCT+TGG | - | chr1.4:72185257-72185276 | None:intergenic | 25.0% |
!!! | TGTTGAAGGAGATTTTAATA+TGG | + | chr1.4:72185935-72185954 | MS.gene09982:CDS | 25.0% |
AAAAGATCCCAAGATCTTAT+GGG | + | chr1.4:72185152-72185171 | MS.gene09982:CDS | 30.0% | |
AACAAAAATCATCAGGGTAA+AGG | + | chr1.4:72185708-72185727 | MS.gene09982:CDS | 30.0% | |
CCAATCAAACAAAAATCATC+AGG | + | chr1.4:72185701-72185720 | MS.gene09982:CDS | 30.0% | |
GAAGAGGTTATATGAATTAC+AGG | + | chr1.4:72185664-72185683 | MS.gene09982:CDS | 30.0% | |
GACAAAATTAAGGCAAGATT+TGG | + | chr1.4:72185174-72185193 | MS.gene09982:CDS | 30.0% | |
GATCTTATGGGACAAAATTA+AGG | + | chr1.4:72185164-72185183 | MS.gene09982:CDS | 30.0% | |
TGGATCAATGGAACAAATTA+AGG | + | chr1.4:72185229-72185248 | MS.gene09982:CDS | 30.0% | |
TGGCAAAACTATAACTGAAA+AGG | + | chr1.4:72185323-72185342 | MS.gene09982:CDS | 30.0% | |
TTCCATTGATCCATTAATGA+GGG | - | chr1.4:72185222-72185241 | None:intergenic | 30.0% | |
TTGTGCAATAATTTGATGCA+TGG | - | chr1.4:72185292-72185311 | None:intergenic | 30.0% | |
TTTGTAATCCATCATCAATG+TGG | - | chr1.4:72185116-72185135 | None:intergenic | 30.0% | |
! | AATTTTGTCCCATAAGATCT+TGG | - | chr1.4:72185163-72185182 | None:intergenic | 30.0% |
! | ATTTTGTCCCATAAGATCTT+GGG | - | chr1.4:72185162-72185181 | None:intergenic | 30.0% |
! | TTTGATTGGTCATATTTGAG+AGG | - | chr1.4:72185690-72185709 | None:intergenic | 30.0% |
!! | CCTGATGATTTTTGTTTGAT+TGG | - | chr1.4:72185704-72185723 | None:intergenic | 30.0% |
AAAGGTAAAAACATCCAGGA+AGG | + | chr1.4:72185726-72185745 | MS.gene09982:CDS | 35.0% | |
AAAGTTGTGGCGTTTATTTC+AGG | - | chr1.4:72185528-72185547 | None:intergenic | 35.0% | |
AATTGAGTATCTTGCATGTG+AGG | + | chr1.4:72184999-72185018 | MS.gene09982:CDS | 35.0% | |
AGATACAAAGAATCTGTGGA+TGG | + | chr1.4:72185840-72185859 | MS.gene09982:CDS | 35.0% | |
ATTCTTGAGGGAGAAGATTT+GGG | + | chr1.4:72185033-72185052 | MS.gene09982:CDS | 35.0% | |
ATTGAGTATCTTGCATGTGA+GGG | + | chr1.4:72185000-72185019 | MS.gene09982:CDS | 35.0% | |
CAAAAGATCCCAAGATCTTA+TGG | + | chr1.4:72185151-72185170 | MS.gene09982:CDS | 35.0% | |
GTTCCATTGATCCATTAATG+AGG | - | chr1.4:72185223-72185242 | None:intergenic | 35.0% | |
TGTTATAGATGCGGAAAGAA+AGG | + | chr1.4:72185774-72185793 | MS.gene09982:CDS | 35.0% | |
! | AACGCCACAACTTTTAATCA+AGG | + | chr1.4:72185534-72185553 | MS.gene09982:CDS | 35.0% |
! | ACCATCATCATGATTTCTAG+AGG | - | chr1.4:72185754-72185773 | None:intergenic | 35.0% |
! | ACGCCACAACTTTTAATCAA+GGG | + | chr1.4:72185535-72185554 | MS.gene09982:CDS | 35.0% |
! | ATTTTGTTCAGCCACTAGAA+GGG | - | chr1.4:72185451-72185470 | None:intergenic | 35.0% |
! | CCATCATCATGATTTCTAGA+GGG | - | chr1.4:72185753-72185772 | None:intergenic | 35.0% |
! | CTCAATTAAGTTGTTGTTCC+AGG | - | chr1.4:72184986-72185005 | None:intergenic | 35.0% |
! | GATGATGGTTGTTATAGATG+CGG | + | chr1.4:72185765-72185784 | MS.gene09982:CDS | 35.0% |
! | TATTTTGTTCAGCCACTAGA+AGG | - | chr1.4:72185452-72185471 | None:intergenic | 35.0% |
! | TTTTCTTTGCCAATTCCTCT+GGG | - | chr1.4:72185065-72185084 | None:intergenic | 35.0% |
! | TTTTTCTTTGCCAATTCCTC+TGG | - | chr1.4:72185066-72185085 | None:intergenic | 35.0% |
!! | AGTCTTATTGCCCTCATTAA+TGG | + | chr1.4:72185209-72185228 | MS.gene09982:CDS | 35.0% |
AATCTGTGGATGGAAAGGAA+AGG | + | chr1.4:72185850-72185869 | MS.gene09982:CDS | 40.0% | |
ACGCCCTTGATTAAAAGTTG+TGG | - | chr1.4:72185541-72185560 | None:intergenic | 40.0% | |
ATCAAGCACCACATTGATGA+TGG | + | chr1.4:72185105-72185124 | MS.gene09982:CDS | 40.0% | |
ATCTGTGGATGGAAAGGAAA+GGG | + | chr1.4:72185851-72185870 | MS.gene09982:CDS | 40.0% | |
CAAAGAATCTGTGGATGGAA+AGG | + | chr1.4:72185845-72185864 | MS.gene09982:CDS | 40.0% | |
GATTCTTGAGGGAGAAGATT+TGG | + | chr1.4:72185032-72185051 | MS.gene09982:CDS | 40.0% | |
GCAATATCACTTGAGATGCA+TGG | - | chr1.4:72185377-72185396 | None:intergenic | 40.0% | |
GGACTCGATAAGATTCTTGA+GGG | + | chr1.4:72185021-72185040 | MS.gene09982:CDS | 40.0% | |
GGGTAAAGGTAAAAACATCC+AGG | + | chr1.4:72185722-72185741 | MS.gene09982:CDS | 40.0% | |
! | ACAACTTTTAATCAAGGGCG+TGG | + | chr1.4:72185540-72185559 | MS.gene09982:CDS | 40.0% |
! | AGACAGGTAGTGTCATTCTT+TGG | - | chr1.4:72185900-72185919 | None:intergenic | 40.0% |
! | CCCTCTAGAAATCATGATGA+TGG | + | chr1.4:72185750-72185769 | MS.gene09982:CDS | 40.0% |
! | TGCCCTCATTAATGGATCAA+TGG | + | chr1.4:72185217-72185236 | MS.gene09982:CDS | 40.0% |
AAAATCAGCAGCCTCAAGAC+AGG | - | chr1.4:72185916-72185935 | None:intergenic | 45.0% | |
ATGCGGAAAGAAAGGCCATT+GGG | + | chr1.4:72185782-72185801 | MS.gene09982:CDS | 45.0% | |
GAATGACACTACCTGTCTTG+AGG | + | chr1.4:72185902-72185921 | MS.gene09982:CDS | 45.0% | |
GGATACGACATTGTTCCTGT+AGG | - | chr1.4:72185507-72185526 | None:intergenic | 45.0% | |
GGGACTCGATAAGATTCTTG+AGG | + | chr1.4:72185020-72185039 | MS.gene09982:CDS | 45.0% | |
GGTGGTTATAATCGCCAAAG+AGG | + | chr1.4:72185561-72185580 | MS.gene09982:CDS | 45.0% | |
TATAATCGCCAAAGAGGACG+TGG | + | chr1.4:72185567-72185586 | MS.gene09982:CDS | 45.0% | |
! | CATGGTCGAAACCATTTTCG+TGG | + | chr1.4:72185630-72185649 | MS.gene09982:CDS | 45.0% |
!! | ACTTTTAATCAAGGGCGTGG+TGG | + | chr1.4:72185543-72185562 | MS.gene09982:CDS | 45.0% |
!!! | GAGGCTGCTGATTTTGTTGA+AGG | + | chr1.4:72185921-72185940 | MS.gene09982:CDS | 45.0% |
AACCATCAGTTGCGTCCTAC+AGG | + | chr1.4:72185489-72185508 | MS.gene09982:CDS | 50.0% | |
AGATTTGGGAGATGTCCCAG+AGG | + | chr1.4:72185047-72185066 | MS.gene09982:CDS | 50.0% | |
CGTGGACGAGGTAGAAATCA+TGG | + | chr1.4:72185612-72185631 | MS.gene09982:CDS | 50.0% | |
CTGGCGACAACTACATAACC+TGG | + | chr1.4:72184965-72184984 | MS.gene09982:CDS | 50.0% | |
GATGCGGAAAGAAAGGCCAT+TGG | + | chr1.4:72185781-72185800 | MS.gene09982:CDS | 50.0% | |
TCCTGCATGCTTTAGCCCAA+TGG | - | chr1.4:72185800-72185819 | None:intergenic | 50.0% | |
TTCCTGTAGGACGCAACTGA+TGG | - | chr1.4:72185494-72185513 | None:intergenic | 50.0% | |
TTTGGTTGCAGCCCTTCTAG+TGG | + | chr1.4:72185437-72185456 | MS.gene09982:CDS | 50.0% | |
! | CGAAACCATTTTCGTGGTGG+AGG | + | chr1.4:72185636-72185655 | MS.gene09982:CDS | 50.0% |
! | GATTTCTAGAGGGACCTTCC+TGG | - | chr1.4:72185743-72185762 | None:intergenic | 50.0% |
! | GGTCGAAACCATTTTCGTGG+TGG | + | chr1.4:72185633-72185652 | MS.gene09982:CDS | 50.0% |
!! | TATGCTCGTTTTGGTGGTCG+TGG | + | chr1.4:72185594-72185613 | MS.gene09982:CDS | 50.0% |
AATCGCCAAAGAGGACGTGG+TGG | + | chr1.4:72185570-72185589 | MS.gene09982:CDS | 55.0% | |
CACGACCTCCACCACGAAAA+TGG | - | chr1.4:72185644-72185663 | None:intergenic | 55.0% | |
CATAGCCACCACGTCCTCTT+TGG | - | chr1.4:72185578-72185597 | None:intergenic | 55.0% | |
GCCATTGGGCTAAAGCATGC+AGG | + | chr1.4:72185796-72185815 | MS.gene09982:CDS | 55.0% | |
GGGAGATGTCCCAGAGGAAT+TGG | + | chr1.4:72185053-72185072 | MS.gene09982:CDS | 55.0% | |
! | CGTGGTGGCTATGCTCGTTT+TGG | + | chr1.4:72185585-72185604 | MS.gene09982:CDS | 55.0% |
! | GGTGGCTATGCTCGTTTTGG+TGG | + | chr1.4:72185588-72185607 | MS.gene09982:CDS | 55.0% |
!! | CATTTTCGTGGTGGAGGTCG+TGG | + | chr1.4:72185642-72185661 | MS.gene09982:CDS | 55.0% |
!! | CGTTTTGGTGGTCGTGGACG+AGG | + | chr1.4:72185600-72185619 | MS.gene09982:CDS | 60.0% |
! | CGTGGTGGAGGTCGTGGAAG+AGG | + | chr1.4:72185648-72185667 | MS.gene09982:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 72184925 | 72185962 | 72184925 | ID=MS.gene09982 |
chr1.4 | mRNA | 72184925 | 72185962 | 72184925 | ID=MS.gene09982.t1;Parent=MS.gene09982 |
chr1.4 | exon | 72184925 | 72185962 | 72184925 | ID=MS.gene09982.t1.exon1;Parent=MS.gene09982.t1 |
chr1.4 | CDS | 72184925 | 72185962 | 72184925 | ID=cds.MS.gene09982.t1;Parent=MS.gene09982.t1 |
Gene Sequence |
Protein sequence |