Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20150.t1 | RHN43581.1 | 95.9 | 221 | 9 | 0 | 1 | 221 | 1 | 221 | 2.20E-105 | 391.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20150.t1 | O82197 | 77.0 | 217 | 43 | 2 | 6 | 221 | 3 | 213 | 2.3e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20150.t1 | A0A396GTR7 | 95.9 | 221 | 9 | 0 | 1 | 221 | 1 | 221 | 1.6e-105 | 391.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052358 | MS.gene20150 | -0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene20150 | 0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene20150 | -0.813427 | 2.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20150.t1 | MTR_8g102020 | 87.783 | 221 | 11 | 1 | 1 | 221 | 1 | 205 | 1.71e-117 | 333 |
| MS.gene20150.t1 | MTR_6g090515 | 77.273 | 220 | 47 | 2 | 5 | 221 | 1 | 220 | 9.19e-97 | 281 |
| MS.gene20150.t1 | MTR_8g102030 | 75.893 | 224 | 49 | 4 | 1 | 221 | 1 | 222 | 2.72e-92 | 270 |
| MS.gene20150.t1 | MTR_1g090490 | 27.397 | 219 | 133 | 8 | 6 | 199 | 1 | 218 | 1.45e-11 | 62.0 |
| MS.gene20150.t1 | MTR_1g090490 | 27.397 | 219 | 133 | 8 | 6 | 199 | 1 | 218 | 1.72e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20150.t1 | AT2G19830 | 76.606 | 218 | 44 | 2 | 5 | 221 | 2 | 213 | 4.64e-103 | 297 |
| MS.gene20150.t1 | AT4G29160 | 75.799 | 219 | 51 | 2 | 5 | 221 | 1 | 219 | 6.08e-93 | 271 |
| MS.gene20150.t1 | AT4G29160 | 75.799 | 219 | 51 | 2 | 5 | 221 | 1 | 219 | 6.08e-93 | 271 |
| MS.gene20150.t1 | AT2G19830 | 78.173 | 197 | 36 | 2 | 26 | 221 | 4 | 194 | 5.70e-92 | 268 |
| MS.gene20150.t1 | AT4G29160 | 76.111 | 180 | 41 | 2 | 44 | 221 | 13 | 192 | 9.52e-80 | 237 |
| MS.gene20150.t1 | AT5G09260 | 27.861 | 201 | 123 | 5 | 14 | 198 | 8 | 202 | 8.95e-11 | 59.7 |
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGTTACCTCGTTTAATT+TGG | 0.150293 | 4.4:+3769549 | None:intergenic |
| ACCATGCTTAACCGACTTCT+TGG | 0.252809 | 4.4:-3769610 | MS.gene20150:CDS |
| TGGGTATGTTGCTGCCCAGC+TGG | 0.279006 | 4.4:+3765783 | None:intergenic |
| TTTCGCCCTCGTGAATTCTT+TGG | 0.289741 | 4.4:+3769119 | None:intergenic |
| GTTTCAAGAGCACTGACTTT+TGG | 0.304284 | 4.4:+3769577 | None:intergenic |
| GCTTGAAATGCTAGAGAAAA+AGG | 0.304501 | 4.4:-3769184 | MS.gene20150:CDS |
| GGAGACAGTGCTACTTAAAA+AGG | 0.305801 | 4.4:-3769163 | MS.gene20150:CDS |
| GCCCCGGTGCATGTCCCAGC+TGG | 0.322693 | 4.4:-3765798 | MS.gene20150:CDS |
| GCCCAGCTGGGACATGCACC+GGG | 0.360165 | 4.4:+3765796 | None:intergenic |
| TGCCCAGCTGGGACATGCAC+CGG | 0.377359 | 4.4:+3765795 | None:intergenic |
| AGATGAATTGGCAAAGTTGC+AGG | 0.389941 | 4.4:-3765730 | MS.gene20150:CDS |
| GGGACATGCACCGGGGCTGC+TGG | 0.392422 | 4.4:+3765804 | None:intergenic |
| AACAGCTGAGGAAGATGAAT+TGG | 0.399058 | 4.4:-3765742 | MS.gene20150:CDS |
| TCATAGTCGGCTGCGCCAAT+TGG | 0.412404 | 4.4:+3766090 | None:intergenic |
| ACGGTTGATGCGTTGAGAAC+TGG | 0.416463 | 4.4:-3766416 | MS.gene20150:CDS |
| AATTCATCTTCCTCAGCTGT+TGG | 0.448508 | 4.4:+3765744 | None:intergenic |
| AGAAAAGATGAGACAGGTTC+AGG | 0.454403 | 4.4:-3766127 | MS.gene20150:CDS |
| GCTGCTGGAGTTGTAATTGT+AGG | 0.468681 | 4.4:+3765819 | None:intergenic |
| AGAGCTAGAGGGTGCTGAGT+TGG | 0.470621 | 4.4:-3765859 | MS.gene20150:CDS |
| GGGTATGTTGCTGCCCAGCT+GGG | 0.476183 | 4.4:+3765784 | None:intergenic |
| GAAGCATTGTCAGCTCCAAT+TGG | 0.479566 | 4.4:-3766105 | MS.gene20150:CDS |
| CCCCGGTGCATGTCCCAGCT+GGG | 0.489366 | 4.4:-3765797 | MS.gene20150:CDS |
| GGCAAAGTTGCAGGCTGAGA+TGG | 0.495235 | 4.4:-3765721 | MS.gene20150:CDS |
| CCAACTGCGTATCCATGATC+AGG | 0.508223 | 4.4:-3768889 | MS.gene20150:intron |
| GATAATGTTGGAAGGAGCTC+AGG | 0.511581 | 4.4:-3766450 | MS.gene20150:CDS |
| TACAATGTTTGAAGAAGAAG+AGG | 0.513826 | 4.4:-3768947 | MS.gene20150:CDS |
| TGTGTTCACACACCTGATCA+TGG | 0.518883 | 4.4:+3768877 | None:intergenic |
| TGATGATGTTGACAATATCA+TGG | 0.524912 | 4.4:-3766169 | MS.gene20150:CDS |
| AGCTCAGGCGACTACAGAAA+CGG | 0.533361 | 4.4:-3766435 | MS.gene20150:CDS |
| GCTGTTGGTTTCACAGACAC+AGG | 0.551462 | 4.4:+3765759 | None:intergenic |
| AATTACAACTCCAGCAGCCC+CGG | 0.560878 | 4.4:-3765814 | MS.gene20150:CDS |
| ACCAAGAAGTCGGTTAAGCA+TGG | 0.563507 | 4.4:+3769609 | None:intergenic |
| TGTGTTGCAGATGATAATGT+TGG | 0.568109 | 4.4:-3766462 | MS.gene20150:intron |
| ACAGACAGAAAAGATGAGAC+AGG | 0.569487 | 4.4:-3766133 | MS.gene20150:CDS |
| AGCAGAACTTGAAGAGCTAG+AGG | 0.569985 | 4.4:-3765871 | MS.gene20150:CDS |
| GTTTAGGTTTACCAAGAAGT+CGG | 0.570677 | 4.4:+3769599 | None:intergenic |
| CCTGATCATGGATACGCAGT+TGG | 0.581942 | 4.4:+3768889 | None:intergenic |
| GAACAGCAAGTAGAGCAGCT+TGG | 0.594879 | 4.4:-3768918 | MS.gene20150:CDS |
| GTTAAGCATGGTCTTCGACA+TGG | 0.597949 | 4.4:+3769621 | None:intergenic |
| CTGTTGGTTTCACAGACACA+GGG | 0.618062 | 4.4:+3765760 | None:intergenic |
| CCCAGCTGGGACATGCACCG+GGG | 0.635872 | 4.4:+3765797 | None:intergenic |
| GAAGACAACCTCATCATAGT+CGG | 0.638747 | 4.4:+3766077 | None:intergenic |
| TTGGTTTCACAGACACAGGG+TGG | 0.644268 | 4.4:+3765763 | None:intergenic |
| GCAGAACTTGAAGAGCTAGA+GGG | 0.656486 | 4.4:-3765870 | MS.gene20150:CDS |
| GTCTGTGAAACCAACAGCTG+AGG | 0.659706 | 4.4:-3765754 | MS.gene20150:CDS |
| TGGCGCAGCCGACTATGATG+AGG | 0.672515 | 4.4:-3766085 | MS.gene20150:intron |
| TGGTTTCACAGACACAGGGT+GGG | 0.675430 | 4.4:+3765764 | None:intergenic |
| TTGCAGATGATAATGTTGGA+AGG | 0.696003 | 4.4:-3766458 | MS.gene20150:intron |
| AACTATAGCCAAATTAAACG+AGG | 0.707070 | 4.4:-3769557 | MS.gene20150:intron |
| AAAAGCCAAAGAATTCACGA+GGG | 0.766165 | 4.4:-3769124 | MS.gene20150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAAGCAAAATAATTT+TGG | - | chr4.4:3767322-3767341 | MS.gene20150:intron | 10.0% |
| !!! | ATTGAATTATTTAAATTTTC+GGG | + | chr4.4:3768336-3768355 | None:intergenic | 10.0% |
| !!! | TATTTTATAAAATTTTGTGT+CGG | - | chr4.4:3768261-3768280 | MS.gene20150:intron | 10.0% |
| !! | ATTAAAAAATTGACGATTAT+AGG | - | chr4.4:3768226-3768245 | MS.gene20150:intron | 15.0% |
| !!! | AATTTTAAAAAACTAAGGTA+CGG | - | chr4.4:3767081-3767100 | MS.gene20150:intron | 15.0% |
| !!! | AATTTTTTAATTTTTACTGG+TGG | + | chr4.4:3768217-3768236 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATTTTTACTGGT+GGG | + | chr4.4:3768216-3768235 | None:intergenic | 15.0% |
| !!! | CTGAATTTATTTTTTATTTC+AGG | - | chr4.4:3769428-3769447 | MS.gene20150:intron | 15.0% |
| !!! | GTCAATTTTTTAATTTTTAC+TGG | + | chr4.4:3768220-3768239 | None:intergenic | 15.0% |
| !! | AAATTTCAATCTGATTGAAA+GGG | - | chr4.4:3766878-3766897 | MS.gene20150:intron | 20.0% |
| !! | AATATTATAATTCTGCTGTT+CGG | - | chr4.4:3767810-3767829 | MS.gene20150:intron | 20.0% |
| !! | ACAAATATGTATATATGGAA+CGG | + | chr4.4:3768019-3768038 | None:intergenic | 20.0% |
| !! | ATAAAATTGTATAATGCCTA+TGG | + | chr4.4:3765986-3766005 | None:intergenic | 20.0% |
| !! | ATTAGACAAATTAAAAGAGA+TGG | - | chr4.4:3768044-3768063 | MS.gene20150:intron | 20.0% |
| !! | TATAGACTTTCAAATTTACA+TGG | - | chr4.4:3768452-3768471 | MS.gene20150:intron | 20.0% |
| !! | TCATTAAAATGAACAAACAA+TGG | + | chr4.4:3766654-3766673 | None:intergenic | 20.0% |
| !!! | AAGTAAAATTCTGAAAAGTA+TGG | + | chr4.4:3767244-3767263 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTCGGGT+GGG | + | chr4.4:3768332-3768351 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAACTAAGGTAC+GGG | - | chr4.4:3767082-3767101 | MS.gene20150:intron | 20.0% |
| !!! | ATTTTGAATGTTTTGTTTCT+TGG | - | chr4.4:3766114-3766133 | MS.gene20150:CDS | 20.0% |
| !!! | TATTTTTATACAATATACCC+AGG | - | chr4.4:3769398-3769417 | MS.gene20150:intron | 20.0% |
| !!! | TGTTTAAAATAAAGATGAGA+TGG | + | chr4.4:3766787-3766806 | None:intergenic | 20.0% |
| !!! | TTTACTATTTTCTCTATTGT+GGG | - | chr4.4:3767480-3767499 | MS.gene20150:intron | 20.0% |
| !!! | TTTTAAAACAAGCATTAAAG+AGG | + | chr4.4:3769037-3769056 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTCAGGATGAAT+TGG | - | chr4.4:3769437-3769456 | MS.gene20150:intron | 20.0% |
| ! | AAAATGAACAAACAATGGTA+TGG | + | chr4.4:3766649-3766668 | None:intergenic | 25.0% |
| ! | AACTGTTAAAAAGAAAGACT+TGG | - | chr4.4:3766534-3766553 | MS.gene20150:intron | 25.0% |
| ! | AATTTCAATCTGATTGAAAG+GGG | - | chr4.4:3766879-3766898 | MS.gene20150:intron | 25.0% |
| ! | AATTTGTGATATGAAAATCC+CGG | + | chr4.4:3767699-3767718 | None:intergenic | 25.0% |
| ! | ACATTAGACAATATAAGCTT+AGG | + | chr4.4:3767539-3767558 | None:intergenic | 25.0% |
| ! | ACTGTTAAAAAGAAAGACTT+GGG | - | chr4.4:3766535-3766554 | MS.gene20150:intron | 25.0% |
| ! | AGTAATAATGAGATTCCTAA+AGG | + | chr4.4:3766305-3766324 | None:intergenic | 25.0% |
| ! | ATGAATATGAAAAGCGAAAT+CGG | + | chr4.4:3765806-3765825 | None:intergenic | 25.0% |
| ! | ATGCATATCTAGATAAAAAG+AGG | + | chr4.4:3767736-3767755 | None:intergenic | 25.0% |
| ! | ATTATGTGACAATAGTTGTT+TGG | + | chr4.4:3768094-3768113 | None:intergenic | 25.0% |
| ! | CAAATTTCAATCTGATTGAA+AGG | - | chr4.4:3766877-3766896 | MS.gene20150:intron | 25.0% |
| ! | GTGAGACAAATATGTATATA+TGG | + | chr4.4:3768024-3768043 | None:intergenic | 25.0% |
| ! | GTGGAATCAAAAAAATACTT+TGG | + | chr4.4:3766812-3766831 | None:intergenic | 25.0% |
| ! | TAACAGTTTAATAGCTAGTT+CGG | + | chr4.4:3766522-3766541 | None:intergenic | 25.0% |
| ! | TGTTATAGAGAATACTATTG+TGG | - | chr4.4:3766263-3766282 | MS.gene20150:intron | 25.0% |
| ! | TTGTTCATACAATATTTCTC+AGG | + | chr4.4:3769060-3769079 | None:intergenic | 25.0% |
| ! | TTTAGGAATCTCATTATTAC+TGG | - | chr4.4:3766304-3766323 | MS.gene20150:intron | 25.0% |
| !! | AAAGTCTTATCTTAAGTGAT+TGG | + | chr4.4:3767463-3767482 | None:intergenic | 25.0% |
| !! | CTTTACTATTTTCTCTATTG+TGG | - | chr4.4:3767479-3767498 | MS.gene20150:intron | 25.0% |
| !!! | ATTGGAAATTTTAGTGTGTA+TGG | + | chr4.4:3767445-3767464 | None:intergenic | 25.0% |
| !!! | CGGCAAATTTTAAAAAACTA+AGG | - | chr4.4:3767076-3767095 | MS.gene20150:intron | 25.0% |
| !!! | GAATTATTTAAATTTTCGGG+TGG | + | chr4.4:3768333-3768352 | None:intergenic | 25.0% |
| !!! | TAAAATTTTGTGTCGGTTTA+TGG | - | chr4.4:3768268-3768287 | MS.gene20150:intron | 25.0% |
| !!! | TGTTCATTTTAATGAAAGAG+TGG | - | chr4.4:3766659-3766678 | MS.gene20150:intron | 25.0% |
| AAAGATGAGATGGAATGAAA+AGG | + | chr4.4:3766777-3766796 | None:intergenic | 30.0% | |
| AACAATACATTTCCTCCTTT+AGG | - | chr4.4:3766287-3766306 | MS.gene20150:intron | 30.0% | |
| AACTATAGCCAAATTAAACG+AGG | - | chr4.4:3765775-3765794 | MS.gene20150:CDS | 30.0% | |
| AATAATGAGATTCCTAAAGG+AGG | + | chr4.4:3766302-3766321 | None:intergenic | 30.0% | |
| AATCTCATTATTACTGGAGT+TGG | - | chr4.4:3766310-3766329 | MS.gene20150:intron | 30.0% | |
| ACTTCTTTCTTCTACTTCTA+GGG | + | chr4.4:3767978-3767997 | None:intergenic | 30.0% | |
| ATTTCAATCTGATTGAAAGG+GGG | - | chr4.4:3766880-3766899 | MS.gene20150:intron | 30.0% | |
| GAATGGAATGGAATGAAATA+AGG | - | chr4.4:3766615-3766634 | MS.gene20150:intron | 30.0% | |
| GATAAAAAGAGGAATGTTTC+TGG | + | chr4.4:3767725-3767744 | None:intergenic | 30.0% | |
| GTACATCAACAATGAAAGAA+AGG | + | chr4.4:3769000-3769019 | None:intergenic | 30.0% | |
| GTGCAGTAAAAAATTTCATC+AGG | - | chr4.4:3767668-3767687 | MS.gene20150:intron | 30.0% | |
| TACAATGTTTGAAGAAGAAG+AGG | - | chr4.4:3766385-3766404 | MS.gene20150:CDS | 30.0% | |
| TAGAATAAGATAGACTTGAG+TGG | - | chr4.4:3766593-3766612 | MS.gene20150:intron | 30.0% | |
| TATAATTGACATGTTAGCGA+AGG | - | chr4.4:3768427-3768446 | MS.gene20150:intron | 30.0% | |
| TTATTTACTCTATGCTGAAG+AGG | - | chr4.4:3769301-3769320 | MS.gene20150:intron | 30.0% | |
| TTTGGATTGATGGAAAATGA+TGG | + | chr4.4:3766841-3766860 | None:intergenic | 30.0% | |
| ! | ATTTTCCATCAATCCAAACA+TGG | - | chr4.4:3766843-3766862 | MS.gene20150:intron | 30.0% |
| ! | CTTTTGATGAAGATAGTAGA+GGG | + | chr4.4:3767280-3767299 | None:intergenic | 30.0% |
| ! | TGATGATGTTGACAATATCA+TGG | - | chr4.4:3769163-3769182 | MS.gene20150:CDS | 30.0% |
| ! | TTATATTTGTTACCGCTAGT+GGG | - | chr4.4:3768794-3768813 | MS.gene20150:intron | 30.0% |
| ! | TTTTGATGAAGATAGTAGAG+GGG | + | chr4.4:3767279-3767298 | None:intergenic | 30.0% |
| !! | AAGAGCATTAAAGAGAAAGT+TGG | + | chr4.4:3767513-3767532 | None:intergenic | 30.0% |
| !! | ACATGTTTTTACAGCAACAA+TGG | + | chr4.4:3767160-3767179 | None:intergenic | 30.0% |
| !! | TTTGATTTTTGCATCCCTTT+CGG | - | chr4.4:3767401-3767420 | MS.gene20150:intron | 30.0% |
| !!! | AAAGTTTGGTTTTGGATGAA+TGG | - | chr4.4:3766728-3766747 | MS.gene20150:intron | 30.0% |
| !!! | AAGTTTGGTTTTGGATGAAT+GGG | - | chr4.4:3766729-3766748 | MS.gene20150:intron | 30.0% |
| !!! | AATGTACCTAAGTTTTAGGA+AGG | - | chr4.4:3766066-3766085 | MS.gene20150:intron | 30.0% |
| !!! | AGTTTTAGGATCAAAACCAT+AGG | - | chr4.4:3765967-3765986 | MS.gene20150:intron | 30.0% |
| !!! | ATTTTCAAGTGTATAACCGT+AGG | - | chr4.4:3766021-3766040 | MS.gene20150:intron | 30.0% |
| !!! | GGCTATTTTTGGATATCTAA+TGG | - | chr4.4:3766556-3766575 | MS.gene20150:intron | 30.0% |
| !!! | TAATGTTTTTAGCGCTGTAA+CGG | - | chr4.4:3767575-3767594 | MS.gene20150:intron | 30.0% |
| !!! | TTAAAAGAGATGGCTAGTTT+TGG | - | chr4.4:3768054-3768073 | MS.gene20150:intron | 30.0% |
| !!! | TTTTAGGAAGGTACTCTTTT+GGG | - | chr4.4:3766078-3766097 | MS.gene20150:intron | 30.0% |
| AAAAAGCCAAAGAATTCACG+AGG | - | chr4.4:3766207-3766226 | MS.gene20150:intron | 35.0% | |
| AAAACTTAGGTACATTGCTC+TGG | + | chr4.4:3766062-3766081 | None:intergenic | 35.0% | |
| AAAAGCCAAAGAATTCACGA+GGG | - | chr4.4:3766208-3766227 | MS.gene20150:intron | 35.0% | |
| AAAATTTCATCAGGCTTGAC+CGG | - | chr4.4:3767677-3767696 | MS.gene20150:intron | 35.0% | |
| AATAAATTCAGTCTGTTGCC+TGG | + | chr4.4:3769419-3769438 | None:intergenic | 35.0% | |
| AGTGAACATTTAGTTGCAAG+GGG | + | chr4.4:3767897-3767916 | None:intergenic | 35.0% | |
| ATAAATTCAGTCTGTTGCCT+GGG | + | chr4.4:3769418-3769437 | None:intergenic | 35.0% | |
| ATCTTCATCAAAAGCAAGAG+AGG | - | chr4.4:3767286-3767305 | MS.gene20150:intron | 35.0% | |
| CAAGTACGAAGTTGAAATGA+CGG | + | chr4.4:3768619-3768638 | None:intergenic | 35.0% | |
| CACTTCTTTCTTCTACTTCT+AGG | + | chr4.4:3767979-3767998 | None:intergenic | 35.0% | |
| CTAATGTTTGCACTCATTCA+TGG | - | chr4.4:3767552-3767571 | MS.gene20150:intron | 35.0% | |
| GAGTGAACATTTAGTTGCAA+GGG | + | chr4.4:3767898-3767917 | None:intergenic | 35.0% | |
| GATTGAAATTTGCAGCCTTA+AGG | + | chr4.4:3766869-3766888 | None:intergenic | 35.0% | |
| GCTTGAAATGCTAGAGAAAA+AGG | - | chr4.4:3766148-3766167 | MS.gene20150:CDS | 35.0% | |
| GTTGTGTGAGAATGAATAGT+GGG | + | chr4.4:3767631-3767650 | None:intergenic | 35.0% | |
| TAAGATAGACTTGAGTGGAA+TGG | - | chr4.4:3766598-3766617 | MS.gene20150:intron | 35.0% | |
| TCAGTTGACAGAACAATACA+CGG | + | chr4.4:3768490-3768509 | None:intergenic | 35.0% | |
| TCTTCATCAAAAGCAAGAGA+GGG | - | chr4.4:3767287-3767306 | MS.gene20150:intron | 35.0% | |
| TGAGTGAACATTTAGTTGCA+AGG | + | chr4.4:3767899-3767918 | None:intergenic | 35.0% | |
| TGTTGTGTGAGAATGAATAG+TGG | + | chr4.4:3767632-3767651 | None:intergenic | 35.0% | |
| TTAGTGCAGCAAAAACGTAT+GGG | + | chr4.4:3767361-3767380 | None:intergenic | 35.0% | |
| TTCATGCTCTTGCTCTTAAA+CGG | - | chr4.4:3769110-3769129 | MS.gene20150:CDS | 35.0% | |
| TTTGGATATCTAATGGAGAG+TGG | - | chr4.4:3766563-3766582 | MS.gene20150:intron | 35.0% | |
| ! | AGAGTACCTTCCTAAAACTT+AGG | + | chr4.4:3766075-3766094 | None:intergenic | 35.0% |
| ! | CTTATATTTGTTACCGCTAG+TGG | - | chr4.4:3768793-3768812 | MS.gene20150:intron | 35.0% |
| ! | GAGCAATGTACCTAAGTTTT+AGG | - | chr4.4:3766062-3766081 | MS.gene20150:intron | 35.0% |
| ! | GCTTTTGATGAAGATAGTAG+AGG | + | chr4.4:3767281-3767300 | None:intergenic | 35.0% |
| ! | GTTTAGGTTTACCAAGAAGT+CGG | + | chr4.4:3765736-3765755 | None:intergenic | 35.0% |
| ! | TGAATGCGTGTGAAAGTTTT+AGG | - | chr4.4:3765953-3765972 | MS.gene20150:intron | 35.0% |
| ! | TGGAAAATGATGGAAAGTAG+TGG | + | chr4.4:3766831-3766850 | None:intergenic | 35.0% |
| ! | TGTGTTGCAGATGATAATGT+TGG | - | chr4.4:3768870-3768889 | MS.gene20150:intron | 35.0% |
| ! | TTGCAGATGATAATGTTGGA+AGG | - | chr4.4:3768874-3768893 | MS.gene20150:intron | 35.0% |
| !! | AGAAAGACTTGGGCTATTTT+TGG | - | chr4.4:3766545-3766564 | MS.gene20150:intron | 35.0% |
| !! | TTTGTGTCGGTTTATGGTTT+CGG | - | chr4.4:3768274-3768293 | MS.gene20150:intron | 35.0% |
| !!! | GTTTTAGGAAGGTACTCTTT+TGG | - | chr4.4:3766077-3766096 | MS.gene20150:intron | 35.0% |
| !!! | TCCACCTGAACTTTTTTTTC+TGG | - | chr4.4:3768691-3768710 | MS.gene20150:intron | 35.0% |
| !!! | TGAATTTTTTCCTCACACAG+CGG | - | chr4.4:3766359-3766378 | MS.gene20150:intron | 35.0% |
| !!! | TTTAGGAAGGTACTCTTTTG+GGG | - | chr4.4:3766079-3766098 | MS.gene20150:intron | 35.0% |
| AAATTTCATCAGGCTTGACC+GGG | - | chr4.4:3767678-3767697 | MS.gene20150:intron | 40.0% | |
| AACAGCTGAGGAAGATGAAT+TGG | - | chr4.4:3769590-3769609 | MS.gene20150:CDS | 40.0% | |
| AAGCTATGATGCATAGGTAC+AGG | - | chr4.4:3767021-3767040 | MS.gene20150:intron | 40.0% | |
| AATTCATCTTCCTCAGCTGT+TGG | + | chr4.4:3769591-3769610 | None:intergenic | 40.0% | |
| ACAGACAGAAAAGATGAGAC+AGG | - | chr4.4:3769199-3769218 | MS.gene20150:intron | 40.0% | |
| ACGAGGGCGAAAAATAAAAG+GGG | - | chr4.4:3766224-3766243 | MS.gene20150:intron | 40.0% | |
| AGAAAAGATGAGACAGGTTC+AGG | - | chr4.4:3769205-3769224 | MS.gene20150:intron | 40.0% | |
| AGATGAATTGGCAAAGTTGC+AGG | - | chr4.4:3769602-3769621 | MS.gene20150:CDS | 40.0% | |
| AGTTGACAGAACAATACACG+GGG | + | chr4.4:3768488-3768507 | None:intergenic | 40.0% | |
| ATAATCATGTTGCCCACTAG+CGG | + | chr4.4:3768809-3768828 | None:intergenic | 40.0% | |
| ATGATGCATAGGTACAGGTA+CGG | - | chr4.4:3767026-3767045 | MS.gene20150:intron | 40.0% | |
| CACGAGGGCGAAAAATAAAA+GGG | - | chr4.4:3766223-3766242 | MS.gene20150:intron | 40.0% | |
| CAGTTGACAGAACAATACAC+GGG | + | chr4.4:3768489-3768508 | None:intergenic | 40.0% | |
| CTCGTGGGTCAATGATATAT+TGG | - | chr4.4:3766333-3766352 | MS.gene20150:intron | 40.0% | |
| GAAGACAACCTCATCATAGT+CGG | + | chr4.4:3769258-3769277 | None:intergenic | 40.0% | |
| GCCAGAAAAAAAAGTTCAGG+TGG | + | chr4.4:3768695-3768714 | None:intergenic | 40.0% | |
| GGAGCCAGAAAAAAAAGTTC+AGG | + | chr4.4:3768698-3768717 | None:intergenic | 40.0% | |
| GTTAGTGCAGCAAAAACGTA+TGG | + | chr4.4:3767362-3767381 | None:intergenic | 40.0% | |
| TAAGGCCATGTTTGGATTGA+TGG | + | chr4.4:3766851-3766870 | None:intergenic | 40.0% | |
| TACACCACTTTGCGAGAATT+TGG | + | chr4.4:3768305-3768324 | None:intergenic | 40.0% | |
| TAGACTTGAGTGGAATGGAA+TGG | - | chr4.4:3766603-3766622 | MS.gene20150:intron | 40.0% | |
| TCACGAGGGCGAAAAATAAA+AGG | - | chr4.4:3766222-3766241 | MS.gene20150:intron | 40.0% | |
| TCATGCTCTTGCTCTTAAAC+GGG | - | chr4.4:3769111-3769130 | MS.gene20150:CDS | 40.0% | |
| TGATCCAAATTCTCGCAAAG+TGG | - | chr4.4:3768298-3768317 | MS.gene20150:intron | 40.0% | |
| TGTGCTAAGCTATGATGCAT+AGG | - | chr4.4:3767015-3767034 | MS.gene20150:intron | 40.0% | |
| ! | GTTTTCCGCAGTTTCAAAAG+TGG | - | chr4.4:3768382-3768401 | MS.gene20150:intron | 40.0% |
| ! | TCAATCCAAACATGGCCTTA+AGG | - | chr4.4:3766851-3766870 | MS.gene20150:intron | 40.0% |
| ! | TTGATGGGCAAGGAAAAGTT+TGG | - | chr4.4:3766714-3766733 | MS.gene20150:intron | 40.0% |
| ! | TTTTCCTTGCCCATCAAACA+GGG | + | chr4.4:3766711-3766730 | None:intergenic | 40.0% |
| !! | ACAGTGCTACTTAAAAAGGC+TGG | - | chr4.4:3766173-3766192 | MS.gene20150:CDS | 40.0% |
| !! | ACCGGTATCGGTACTTAATA+CGG | - | chr4.4:3767056-3767075 | MS.gene20150:intron | 40.0% |
| !! | CGGTGTTACCTCGTTTAATT+TGG | + | chr4.4:3765786-3765805 | None:intergenic | 40.0% |
| !! | GGAGACAGTGCTACTTAAAA+AGG | - | chr4.4:3766169-3766188 | MS.gene20150:CDS | 40.0% |
| !! | GGCAAGGAAAAGTTTGGTTT+TGG | - | chr4.4:3766720-3766739 | MS.gene20150:intron | 40.0% |
| !!! | AGAGCACTGACTTTTGGTTT+AGG | + | chr4.4:3765752-3765771 | None:intergenic | 40.0% |
| !!! | GTATGCCACTTTTGAAACTG+CGG | + | chr4.4:3768390-3768409 | None:intergenic | 40.0% |
| !!! | GTTTCAAGAGCACTGACTTT+TGG | + | chr4.4:3765758-3765777 | None:intergenic | 40.0% |
| !!! | TTAGGAAGGTACTCTTTTGG+GGG | - | chr4.4:3766080-3766099 | MS.gene20150:intron | 40.0% |
| ACCAAGAAGTCGGTTAAGCA+TGG | + | chr4.4:3765726-3765745 | None:intergenic | 45.0% | |
| AGCAGAACTTGAAGAGCTAG+AGG | - | chr4.4:3769461-3769480 | MS.gene20150:intron | 45.0% | |
| ATTCTCGCAAAGTGGTGTAG+TGG | - | chr4.4:3768306-3768325 | MS.gene20150:intron | 45.0% | |
| GATAATGTTGGAAGGAGCTC+AGG | - | chr4.4:3768882-3768901 | MS.gene20150:intron | 45.0% | |
| GCAGAACTTGAAGAGCTAGA+GGG | - | chr4.4:3769462-3769481 | MS.gene20150:intron | 45.0% | |
| GCTACTTAAAAAGGCTGGAG+CGG | - | chr4.4:3766178-3766197 | MS.gene20150:CDS | 45.0% | |
| GCTGCTGGAGTTGTAATTGT+AGG | + | chr4.4:3769516-3769535 | None:intergenic | 45.0% | |
| GTTGACAGAACAATACACGG+GGG | + | chr4.4:3768487-3768506 | None:intergenic | 45.0% | |
| TCAATCTGATTGAAAGGGGG+CGG | - | chr4.4:3766883-3766902 | MS.gene20150:intron | 45.0% | |
| TGTGTTCACACACCTGATCA+TGG | + | chr4.4:3766458-3766477 | None:intergenic | 45.0% | |
| TTCTGCTGTTCGGTATGAGA+TGG | - | chr4.4:3767820-3767839 | MS.gene20150:intron | 45.0% | |
| TTTCCTTGCCCATCAAACAG+GGG | + | chr4.4:3766710-3766729 | None:intergenic | 45.0% | |
| TTTCGCCCTCGTGAATTCTT+TGG | + | chr4.4:3766216-3766235 | None:intergenic | 45.0% | |
| ! | ACCATGCTTAACCGACTTCT+TGG | - | chr4.4:3765722-3765741 | MS.gene20150:CDS | 45.0% |
| ! | CTTTTCCTTGCCCATCAAAC+AGG | + | chr4.4:3766712-3766731 | None:intergenic | 45.0% |
| ! | GCACAGTTTGACTGGTTCAT+GGG | - | chr4.4:3768728-3768747 | MS.gene20150:intron | 45.0% |
| !! | AGAGCCATATAAGCACCGAA+AGG | + | chr4.4:3767419-3767438 | None:intergenic | 45.0% |
| !! | CATCCCTTTCGGTGCTTATA+TGG | - | chr4.4:3767412-3767431 | MS.gene20150:intron | 45.0% |
| !! | CATGATTGATTCGCACACAG+TGG | - | chr4.4:3768158-3768177 | MS.gene20150:intron | 45.0% |
| !! | CTGTTGGTTTCACAGACACA+GGG | + | chr4.4:3769575-3769594 | None:intergenic | 45.0% |
| !! | GAAGCATTGTCAGCTCCAAT+TGG | - | chr4.4:3769227-3769246 | MS.gene20150:intron | 45.0% |
| !! | GAGCCATATAAGCACCGAAA+GGG | + | chr4.4:3767418-3767437 | None:intergenic | 45.0% |
| !! | GCCGTATTAAGTACCGATAC+CGG | + | chr4.4:3767060-3767079 | None:intergenic | 45.0% |
| !! | TAATTTTTACTGGTGGGCCG+TGG | + | chr4.4:3768210-3768229 | None:intergenic | 45.0% |
| !! | TATTACTGGAGTTGGCTCGT+GGG | - | chr4.4:3766318-3766337 | MS.gene20150:intron | 45.0% |
| !! | TTATTACTGGAGTTGGCTCG+TGG | - | chr4.4:3766317-3766336 | MS.gene20150:intron | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr4.4:3768339-3768358 | MS.gene20150:intron | 5.0% |
| !!! | AATTGAATTATTTAAATTTT+CGG | + | chr4.4:3768337-3768356 | None:intergenic | 5.0% |
| !!! | TATATTATAAATAATTTTAG+TGG | - | chr4.4:3768668-3768687 | MS.gene20150:intron | 5.0% |
| AAGTAGTCTGCCAGTCAGAC+TGG | + | chr4.4:3768776-3768795 | None:intergenic | 50.0% | |
| AATTACAACTCCAGCAGCCC+CGG | - | chr4.4:3769518-3769537 | MS.gene20150:intron | 50.0% | |
| ACAGTGGCAGAGCCCTTAAT+GGG | - | chr4.4:3768174-3768193 | MS.gene20150:intron | 50.0% | |
| ACATGTCTTCCCAGTCTGAC+TGG | - | chr4.4:3768763-3768782 | MS.gene20150:intron | 50.0% | |
| ACCGTAGGAACAGTATCCAG+AGG | - | chr4.4:3766036-3766055 | MS.gene20150:intron | 50.0% | |
| AGCTCAGGCGACTACAGAAA+CGG | - | chr4.4:3768897-3768916 | MS.gene20150:CDS | 50.0% | |
| AGTAGTCTGCCAGTCAGACT+GGG | + | chr4.4:3768775-3768794 | None:intergenic | 50.0% | |
| CACTGTTCGCACAGTTTGAC+TGG | - | chr4.4:3768720-3768739 | MS.gene20150:intron | 50.0% | |
| CAGTCAAACTGTGCGAACAG+TGG | + | chr4.4:3768722-3768741 | None:intergenic | 50.0% | |
| CATAGGTACAGGTACGGTAC+GGG | - | chr4.4:3767032-3767051 | MS.gene20150:intron | 50.0% | |
| CATTGTATTGCCGCTGTGTG+AGG | + | chr4.4:3766372-3766391 | None:intergenic | 50.0% | |
| CCAACTGCGTATCCATGATC+AGG | - | chr4.4:3766443-3766462 | MS.gene20150:CDS | 50.0% | |
| CCTGATCATGGATACGCAGT+TGG | + | chr4.4:3766446-3766465 | None:intergenic | 50.0% | |
| GAACAGCAAGTAGAGCAGCT+TGG | - | chr4.4:3766414-3766433 | MS.gene20150:CDS | 50.0% | |
| GCATAGGTACAGGTACGGTA+CGG | - | chr4.4:3767031-3767050 | MS.gene20150:intron | 50.0% | |
| GCCTCTGGATACTGTTCCTA+CGG | + | chr4.4:3766040-3766059 | None:intergenic | 50.0% | |
| GTCTGTGAAACCAACAGCTG+AGG | - | chr4.4:3769578-3769597 | MS.gene20150:CDS | 50.0% | |
| GTGCAGCAAAAACGTATGGG+CGG | + | chr4.4:3767358-3767377 | None:intergenic | 50.0% | |
| TCAAACTGTGCGAACAGTGG+CGG | + | chr4.4:3768719-3768738 | None:intergenic | 50.0% | |
| TCCAGTCTCCCCTGTTTGAT+GGG | - | chr4.4:3766699-3766718 | MS.gene20150:intron | 50.0% | |
| TGCAGCCTTAAGGCCATGTT+TGG | + | chr4.4:3766859-3766878 | None:intergenic | 50.0% | |
| TGGTTTCACAGACACAGGGT+GGG | + | chr4.4:3769571-3769590 | None:intergenic | 50.0% | |
| TTGGTTTCACAGACACAGGG+TGG | + | chr4.4:3769572-3769591 | None:intergenic | 50.0% | |
| ! | ACGGTTGATGCGTTGAGAAC+TGG | - | chr4.4:3768916-3768935 | MS.gene20150:CDS | 50.0% |
| ! | CGCACAGTTTGACTGGTTCA+TGG | - | chr4.4:3768727-3768746 | MS.gene20150:intron | 50.0% |
| !! | GCTGTTGGTTTCACAGACAC+AGG | + | chr4.4:3769576-3769595 | None:intergenic | 50.0% |
| AGCCCTTAATGGGATGGGGT+GGG | - | chr4.4:3768184-3768203 | MS.gene20150:intron | 55.0% | |
| AGGTACATTGCTCTGGCCTC+TGG | + | chr4.4:3766055-3766074 | None:intergenic | 55.0% | |
| CACAGTGGCAGAGCCCTTAA+TGG | - | chr4.4:3768173-3768192 | MS.gene20150:intron | 55.0% | |
| CAGCAAAAACGTATGGGCGG+TGG | + | chr4.4:3767355-3767374 | None:intergenic | 55.0% | |
| CAGGGGAGACTGGAGTAAAC+AGG | + | chr4.4:3766693-3766712 | None:intergenic | 55.0% | |
| CGCGAGTGTCTCAAGTATGC+AGG | + | chr4.4:3766982-3767001 | None:intergenic | 55.0% | |
| CTCCAGTCTCCCCTGTTTGA+TGG | - | chr4.4:3766698-3766717 | MS.gene20150:intron | 55.0% | |
| GCAGAGCCCTTAATGGGATG+GGG | - | chr4.4:3768180-3768199 | MS.gene20150:intron | 55.0% | |
| GGCAAAGTTGCAGGCTGAGA+TGG | - | chr4.4:3769611-3769630 | MS.gene20150:CDS | 55.0% | |
| GGCAGAGCCCTTAATGGGAT+GGG | - | chr4.4:3768179-3768198 | MS.gene20150:intron | 55.0% | |
| TACAGGTACGGTACGGGTAC+CGG | - | chr4.4:3767038-3767057 | MS.gene20150:intron | 55.0% | |
| TCATAGTCGGCTGCGCCAAT+TGG | + | chr4.4:3769245-3769264 | None:intergenic | 55.0% | |
| TGGCAGAGCCCTTAATGGGA+TGG | - | chr4.4:3768178-3768197 | MS.gene20150:intron | 55.0% | |
| ! | TCTCCCCTGTTTGATGGGCA+AGG | - | chr4.4:3766704-3766723 | MS.gene20150:intron | 55.0% |
| !! | AGAGCTAGAGGGTGCTGAGT+TGG | - | chr4.4:3769473-3769492 | MS.gene20150:intron | 55.0% |
| !! | TACGGTACGGGTACCGGTAT+CGG | - | chr4.4:3767044-3767063 | MS.gene20150:intron | 55.0% |
| GAGCCCTTAATGGGATGGGG+TGG | - | chr4.4:3768183-3768202 | MS.gene20150:intron | 60.0% | |
| GCCCATCAAACAGGGGAGAC+TGG | + | chr4.4:3766703-3766722 | None:intergenic | 60.0% | |
| GGCCCACCCCATCCCATTAA+GGG | + | chr4.4:3768189-3768208 | None:intergenic | 60.0% | |
| GGGTATGTTGCTGCCCAGCT+GGG | + | chr4.4:3769551-3769570 | None:intergenic | 60.0% | |
| TAATGGGATGGGGTGGGCCA+CGG | - | chr4.4:3768190-3768209 | MS.gene20150:intron | 60.0% | |
| TGGCCCACCCCATCCCATTA+AGG | + | chr4.4:3768190-3768209 | None:intergenic | 60.0% | |
| TGGCGCAGCCGACTATGATG+AGG | - | chr4.4:3769247-3769266 | MS.gene20150:intron | 60.0% | |
| TGGGTATGTTGCTGCCCAGC+TGG | + | chr4.4:3769552-3769571 | None:intergenic | 60.0% | |
| TGCCCAGCTGGGACATGCAC+CGG | + | chr4.4:3769540-3769559 | None:intergenic | 65.0% | |
| CCCAGCTGGGACATGCACCG+GGG | + | chr4.4:3769538-3769557 | None:intergenic | 70.0% | |
| CCCCGGTGCATGTCCCAGCT+GGG | - | chr4.4:3769535-3769554 | MS.gene20150:intron | 70.0% | |
| GCCCAGCTGGGACATGCACC+GGG | + | chr4.4:3769539-3769558 | None:intergenic | 70.0% | |
| GCCCCGGTGCATGTCCCAGC+TGG | - | chr4.4:3769534-3769553 | MS.gene20150:intron | 75.0% | |
| GGGACATGCACCGGGGCTGC+TGG | + | chr4.4:3769531-3769550 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3765713 | 3769641 | 3765713 | ID=MS.gene20150 |
| chr4.4 | mRNA | 3765713 | 3769641 | 3765713 | ID=MS.gene20150.t1;Parent=MS.gene20150 |
| chr4.4 | exon | 3769558 | 3769641 | 3769558 | ID=MS.gene20150.t1.exon1;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3769558 | 3769641 | 3769558 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| chr4.4 | exon | 3769109 | 3769208 | 3769109 | ID=MS.gene20150.t1.exon2;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3769109 | 3769208 | 3769109 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| chr4.4 | exon | 3768890 | 3768975 | 3768890 | ID=MS.gene20150.t1.exon3;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3768890 | 3768975 | 3768890 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| chr4.4 | exon | 3766383 | 3766474 | 3766383 | ID=MS.gene20150.t1.exon4;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3766383 | 3766474 | 3766383 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| chr4.4 | exon | 3766086 | 3766197 | 3766086 | ID=MS.gene20150.t1.exon5;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3766086 | 3766197 | 3766086 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| chr4.4 | exon | 3765713 | 3765904 | 3765713 | ID=MS.gene20150.t1.exon6;Parent=MS.gene20150.t1 |
| chr4.4 | CDS | 3765713 | 3765904 | 3765713 | ID=cds.MS.gene20150.t1;Parent=MS.gene20150.t1 |
| Gene Sequence |
| Protein sequence |
