Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20278.t1 | XP_003611614.1 | 96.1 | 231 | 9 | 0 | 1 | 231 | 1 | 231 | 1.50E-125 | 458.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20278.t1 | Q9SZE8 | 55.3 | 246 | 89 | 6 | 1 | 231 | 1 | 240 | 1.1e-63 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20278.t1 | G7K3V2 | 96.1 | 231 | 9 | 0 | 1 | 231 | 1 | 231 | 1.1e-125 | 458.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20278.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20278 | MS.gene041894 | PPI |
| MS.gene20278 | MS.gene011734 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20278.t1 | MTR_5g015880 | 96.104 | 231 | 9 | 0 | 1 | 231 | 1 | 231 | 1.55e-164 | 453 |
| MS.gene20278.t1 | MTR_4g095600 | 70.124 | 241 | 54 | 6 | 1 | 231 | 1 | 233 | 1.96e-110 | 317 |
| MS.gene20278.t1 | MTR_1g106420 | 57.237 | 152 | 60 | 3 | 1 | 147 | 1 | 152 | 2.94e-56 | 178 |
| MS.gene20278.t1 | MTR_7g007010 | 64.545 | 110 | 39 | 0 | 1 | 110 | 3 | 112 | 3.17e-52 | 171 |
| MS.gene20278.t1 | MTR_6g018270 | 61.818 | 110 | 42 | 0 | 1 | 110 | 3 | 112 | 8.11e-50 | 164 |
| MS.gene20278.t1 | MTR_6g453130 | 46.746 | 169 | 79 | 5 | 1 | 164 | 3 | 165 | 2.63e-46 | 154 |
| MS.gene20278.t1 | MTR_1g110840 | 44.910 | 167 | 87 | 3 | 1 | 165 | 3 | 166 | 8.64e-45 | 150 |
| MS.gene20278.t1 | MTR_6g054150 | 48.120 | 133 | 65 | 3 | 1 | 131 | 3 | 133 | 1.73e-40 | 139 |
| MS.gene20278.t1 | MTR_6g054080 | 47.368 | 133 | 66 | 3 | 1 | 131 | 3 | 133 | 2.26e-39 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20278.t1 | AT4G37540 | 55.645 | 248 | 85 | 8 | 1 | 231 | 1 | 240 | 6.26e-81 | 242 |
| MS.gene20278.t1 | AT3G49940 | 57.031 | 256 | 76 | 10 | 1 | 231 | 1 | 247 | 6.25e-80 | 240 |
| MS.gene20278.t1 | AT5G67420 | 52.941 | 255 | 91 | 6 | 1 | 231 | 1 | 250 | 1.03e-74 | 227 |
| MS.gene20278.t1 | AT5G67420 | 52.941 | 255 | 91 | 6 | 1 | 231 | 1 | 250 | 1.03e-74 | 227 |
| MS.gene20278.t1 | AT1G67100 | 65.455 | 110 | 38 | 0 | 1 | 110 | 3 | 112 | 5.72e-52 | 168 |
| MS.gene20278.t1 | AT3G02550 | 63.636 | 110 | 40 | 0 | 1 | 110 | 3 | 112 | 2.08e-49 | 162 |
| MS.gene20278.t1 | AT1G68510 | 60.177 | 113 | 43 | 1 | 1 | 111 | 3 | 115 | 1.19e-46 | 154 |
Find 79 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATGAACCGGACTTTC+TGG | 0.160468 | 5.1:-8293846 | None:intergenic |
| GAAACTCCGGTAAGGGTTTA+AGG | 0.160922 | 5.1:-8293735 | None:intergenic |
| ACGCGTTGACCAACGGTTTC+CGG | 0.249914 | 5.1:+8293953 | MS.gene20278:CDS |
| ATTAAAATTCTCAAACAAAA+AGG | 0.262922 | 5.1:-8294101 | None:intergenic |
| GTGGCATGACCTTGAGCTTC+AGG | 0.279564 | 5.1:-8293360 | None:intergenic |
| ACTCACTACAACCCTTTCTA+AGG | 0.331551 | 5.1:-8293299 | None:intergenic |
| GAATTCATCGACGGTGTTCC+CGG | 0.351208 | 5.1:-8293991 | None:intergenic |
| GGACTTTCTGGTTCGGATCT+CGG | 0.355586 | 5.1:-8293834 | None:intergenic |
| AAGATTATTTACCAGGTCTC+TGG | 0.363996 | 5.1:-8293449 | None:intergenic |
| AGTCCGACAGCACCGTTAAC+GGG | 0.370602 | 5.1:-8293649 | None:intergenic |
| ACGCGTTCTGTGGCGTTAAC+CGG | 0.381628 | 5.1:-8293936 | None:intergenic |
| CGGAACCCTTAAACCCTTAC+CGG | 0.384595 | 5.1:+8293729 | MS.gene20278:CDS |
| TTACCAGGTCTCTGGGGTGG+AGG | 0.387387 | 5.1:-8293441 | None:intergenic |
| AAAGTCCGGTTCATGAGTTC+TGG | 0.390533 | 5.1:+8293850 | MS.gene20278:CDS |
| TATTACGCCCTTGTATTCAA+TGG | 0.394479 | 5.1:+8293328 | MS.gene20278:CDS |
| AAGTCCGACAGCACCGTTAA+CGG | 0.413291 | 5.1:-8293650 | None:intergenic |
| AAACTCCGGTAAGGGTTTAA+GGG | 0.432686 | 5.1:-8293734 | None:intergenic |
| AAACCCTTACCGGAGTTTCT+CGG | 0.442329 | 5.1:+8293739 | MS.gene20278:CDS |
| CGGTTGCCGTGTCCTTAGAA+AGG | 0.456637 | 5.1:+8293287 | MS.gene20278:CDS |
| GGTGGTAAACGCAAGCGATC+AGG | 0.465080 | 5.1:+8293871 | MS.gene20278:CDS |
| AGATTATTTACCAGGTCTCT+GGG | 0.469772 | 5.1:-8293448 | None:intergenic |
| TACCACCAGAACTCATGAAC+CGG | 0.478203 | 5.1:-8293855 | None:intergenic |
| ATGAACCGGACTTTCTGGTT+CGG | 0.483553 | 5.1:-8293841 | None:intergenic |
| AGCACCGTTAACGGGGTTCA+CGG | 0.485215 | 5.1:-8293641 | None:intergenic |
| TGTGACGACGGTGACGTGCT+TGG | 0.492180 | 5.1:+8294023 | MS.gene20278:CDS |
| TGGCATGACCTTGAGCTTCA+GGG | 0.492713 | 5.1:-8293359 | None:intergenic |
| CGGAGGGAAATTCGCCGGCC+GGG | 0.499369 | 5.1:+8293973 | MS.gene20278:CDS |
| AGAACCGTGAACCCCGTTAA+CGG | 0.510533 | 5.1:+8293637 | MS.gene20278:CDS |
| CCGGAGGGAAATTCGCCGGC+CGG | 0.514516 | 5.1:+8293972 | MS.gene20278:CDS |
| TACCAGGTCTCTGGGGTGGA+GGG | 0.518250 | 5.1:-8293440 | None:intergenic |
| GTGTCAAGCGGCGGTTGAAA+CGG | 0.518728 | 5.1:+8293696 | MS.gene20278:CDS |
| GGTTGCCGTGTCCTTAGAAA+GGG | 0.520856 | 5.1:+8293288 | MS.gene20278:CDS |
| CGTTAGAAATGAAAGACATA+AGG | 0.526325 | 5.1:-8293416 | None:intergenic |
| GCGTCTAAACCGAGAAACTC+CGG | 0.534500 | 5.1:-8293748 | None:intergenic |
| GAGATCCGAACCAGAAAGTC+CGG | 0.539752 | 5.1:+8293836 | MS.gene20278:CDS |
| TCATCGACGGTGTTCCCGGC+CGG | 0.542141 | 5.1:-8293987 | None:intergenic |
| ACGGTGACGTGCTTGGAAAG+TGG | 0.543942 | 5.1:+8294030 | MS.gene20278:CDS |
| GTATCGATCCATTGAATACA+AGG | 0.548656 | 5.1:-8293336 | None:intergenic |
| CGGTGACGTGCTTGGAAAGT+GGG | 0.551329 | 5.1:+8294031 | MS.gene20278:CDS |
| TTCTGAGGAATCTGTGACGA+CGG | 0.564218 | 5.1:+8294011 | MS.gene20278:CDS |
| TGCTTGGAAAGTGGGATCGG+AGG | 0.566383 | 5.1:+8294039 | MS.gene20278:CDS |
| GTCCCTCCACCCCAGAGACC+TGG | 0.567656 | 5.1:+8293438 | MS.gene20278:CDS |
| AAACCGAGAAACTCCGGTAA+GGG | 0.570584 | 5.1:-8293742 | None:intergenic |
| TAAACCGAGAAACTCCGGTA+AGG | 0.571879 | 5.1:-8293743 | None:intergenic |
| CCGTTGGTCAACGCGTTCTG+TGG | 0.575430 | 5.1:-8293946 | None:intergenic |
| GTTTCCGGAGGGAAATTCGC+CGG | 0.577846 | 5.1:+8293968 | MS.gene20278:CDS |
| AATTTCCCTCCGGAAACCGT+TGG | 0.583258 | 5.1:-8293962 | None:intergenic |
| ACCGTTGATGACTCATCTGA+AGG | 0.585962 | 5.1:+8293781 | MS.gene20278:CDS |
| ACGTGCTTGGAAAGTGGGAT+CGG | 0.586938 | 5.1:+8294036 | MS.gene20278:CDS |
| CCGGCCGGCGAATTTCCCTC+CGG | 0.587093 | 5.1:-8293972 | None:intergenic |
| AACCCCGTTAACGGTGCTGT+CGG | 0.588780 | 5.1:+8293646 | MS.gene20278:CDS |
| AGATTAAGATCAGTCGTCGC+CGG | 0.593377 | 5.1:-8293913 | None:intergenic |
| TATTTACCAGGTCTCTGGGG+TGG | 0.593625 | 5.1:-8293444 | None:intergenic |
| TCCTTCAGATGAGTCATCAA+CGG | 0.596231 | 5.1:-8293782 | None:intergenic |
| CGACGACTGATCTTAATCTC+CGG | 0.598907 | 5.1:+8293917 | MS.gene20278:CDS |
| AAGTCACGTGCAACGACGCG+CGG | 0.599047 | 5.1:+8293806 | MS.gene20278:CDS |
| CGTTGACCAACGGTTTCCGG+AGG | 0.601993 | 5.1:+8293956 | MS.gene20278:CDS |
| CCACAGAACGCGTTGACCAA+CGG | 0.603462 | 5.1:+8293946 | MS.gene20278:CDS |
| AGGGTTTAAGGGTTCCGCCA+CGG | 0.607346 | 5.1:-8293723 | None:intergenic |
| GGCATGACCTTGAGCTTCAG+GGG | 0.607961 | 5.1:-8293358 | None:intergenic |
| TACAACCCTTTCTAAGGACA+CGG | 0.609661 | 5.1:-8293293 | None:intergenic |
| ATCGATACCCCTGAAGCTCA+AGG | 0.611816 | 5.1:+8293351 | MS.gene20278:CDS |
| CAACTAGGTATGAGTTGCAA+CGG | 0.621586 | 5.1:+8293267 | None:intergenic |
| GTCCGGTTCATGAGTTCTGG+TGG | 0.622596 | 5.1:+8293853 | MS.gene20278:CDS |
| TGAAAGACATAAGGTCAGCA+CGG | 0.634887 | 5.1:-8293407 | None:intergenic |
| GTCCGACAGCACCGTTAACG+GGG | 0.636214 | 5.1:-8293648 | None:intergenic |
| GGTAAACGCAAGCGATCAGG+TGG | 0.636761 | 5.1:+8293874 | MS.gene20278:CDS |
| GTTGAAACGGTGCTCCGTGG+CGG | 0.644097 | 5.1:+8293709 | MS.gene20278:CDS |
| AAACTGGCACGTGTGTCAAG+CGG | 0.645348 | 5.1:+8293684 | MS.gene20278:CDS |
| GTTGACCAACGGTTTCCGGA+GGG | 0.646523 | 5.1:+8293957 | MS.gene20278:CDS |
| CTGGCACGTGTGTCAAGCGG+CGG | 0.654365 | 5.1:+8293687 | MS.gene20278:CDS |
| TTCAGATGAGTCATCAACGG+TGG | 0.656087 | 5.1:-8293779 | None:intergenic |
| GCGGTTGAAACGGTGCTCCG+TGG | 0.657002 | 5.1:+8293706 | MS.gene20278:CDS |
| TCTTTGTTGTTTGAAGCGTG+TGG | 0.669278 | 5.1:+8293613 | MS.gene20278:CDS |
| GATTCCTCAGAATTCATCGA+CGG | 0.685600 | 5.1:-8294000 | None:intergenic |
| TATCGATCCATTGAATACAA+GGG | 0.699979 | 5.1:-8293335 | None:intergenic |
| GATTATTTACCAGGTCTCTG+GGG | 0.703283 | 5.1:-8293447 | None:intergenic |
| AACACCGTCGATGAATTCTG+AGG | 0.704407 | 5.1:+8293996 | MS.gene20278:CDS |
| AAACTTGGCTACAAAGACAG+TGG | 0.714204 | 5.1:-8293379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAGATAAAGATTATTTACC+AGG | - | chr5.1:8293459-8293478 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | + | chr5.1:8293559-8293578 | MS.gene20278:intron | 25.0% |
| CGTTAGAAATGAAAGACATA+AGG | - | chr5.1:8293419-8293438 | None:intergenic | 30.0% | |
| TATCGATCCATTGAATACAA+GGG | - | chr5.1:8293338-8293357 | None:intergenic | 30.0% | |
| AAGATTATTTACCAGGTCTC+TGG | - | chr5.1:8293452-8293471 | None:intergenic | 35.0% | |
| AGATTATTTACCAGGTCTCT+GGG | - | chr5.1:8293451-8293470 | None:intergenic | 35.0% | |
| CAAAAAGGTTGAGAACTTTG+CGG | - | chr5.1:8294089-8294108 | None:intergenic | 35.0% | |
| CATGTGACAAACTACTTAGA+GGG | - | chr5.1:8293508-8293527 | None:intergenic | 35.0% | |
| TATTACGCCCTTGTATTCAA+TGG | + | chr5.1:8293328-8293347 | MS.gene20278:CDS | 35.0% | |
| TCATGTGACAAACTACTTAG+AGG | - | chr5.1:8293509-8293528 | None:intergenic | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | - | chr5.1:8293339-8293358 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | + | chr5.1:8293384-8293403 | MS.gene20278:CDS | 35.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | - | chr5.1:8293737-8293756 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | - | chr5.1:8293382-8293401 | None:intergenic | 40.0% | |
| ACTCACTACAACCCTTTCTA+AGG | - | chr5.1:8293302-8293321 | None:intergenic | 40.0% | |
| GATTATTTACCAGGTCTCTG+GGG | - | chr5.1:8293450-8293469 | None:intergenic | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | - | chr5.1:8294003-8294022 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | - | chr5.1:8293785-8293804 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | - | chr5.1:8293410-8293429 | None:intergenic | 40.0% | |
| TGACAAACTACTTAGAGGGA+AGG | - | chr5.1:8293504-8293523 | None:intergenic | 40.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | - | chr5.1:8293296-8293315 | None:intergenic | 40.0% |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | + | chr5.1:8293613-8293632 | MS.gene20278:CDS | 40.0% |
| !!! | TGGTGAAGTTTTGAAGCTTC+CGG | + | chr5.1:8293894-8293913 | MS.gene20278:CDS | 40.0% |
| AAACCCTTACCGGAGTTTCT+CGG | + | chr5.1:8293739-8293758 | MS.gene20278:CDS | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | - | chr5.1:8293745-8293764 | None:intergenic | 45.0% | |
| AAAGTCCGGTTCATGAGTTC+TGG | + | chr5.1:8293850-8293869 | MS.gene20278:CDS | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | + | chr5.1:8293996-8294015 | MS.gene20278:CDS | 45.0% | |
| AACTCATGAACCGGACTTTC+TGG | - | chr5.1:8293849-8293868 | None:intergenic | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | - | chr5.1:8293916-8293935 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | + | chr5.1:8293917-8293936 | MS.gene20278:CDS | 45.0% | |
| GAAACTCCGGTAAGGGTTTA+AGG | - | chr5.1:8293738-8293757 | None:intergenic | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | - | chr5.1:8293746-8293765 | None:intergenic | 45.0% | |
| TACCACCAGAACTCATGAAC+CGG | - | chr5.1:8293858-8293877 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | - | chr5.1:8293782-8293801 | None:intergenic | 45.0% | |
| ! | GACTTTTGTGGACAGGAAAC+TGG | + | chr5.1:8293668-8293687 | MS.gene20278:CDS | 45.0% |
| ! | TTAGAGGGAAGGTGTAACTG+TGG | - | chr5.1:8293493-8293512 | None:intergenic | 45.0% |
| ! | TTCTGAGGAATCTGTGACGA+CGG | + | chr5.1:8294011-8294030 | MS.gene20278:CDS | 45.0% |
| !! | ACCGTTGATGACTCATCTGA+AGG | + | chr5.1:8293781-8293800 | MS.gene20278:CDS | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | - | chr5.1:8293844-8293863 | None:intergenic | 45.0% |
| AAACTGGCACGTGTGTCAAG+CGG | + | chr5.1:8293684-8293703 | MS.gene20278:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | - | chr5.1:8293653-8293672 | None:intergenic | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | - | chr5.1:8293965-8293984 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+CGG | + | chr5.1:8294036-8294055 | MS.gene20278:CDS | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | + | chr5.1:8293637-8293656 | MS.gene20278:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | + | chr5.1:8293351-8293370 | MS.gene20278:CDS | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | + | chr5.1:8293729-8293748 | MS.gene20278:CDS | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | - | chr5.1:8293994-8294013 | None:intergenic | 50.0% | |
| GAGATCCGAACCAGAAAGTC+CGG | + | chr5.1:8293836-8293855 | MS.gene20278:CDS | 50.0% | |
| GCGTCTAAACCGAGAAACTC+CGG | - | chr5.1:8293751-8293770 | None:intergenic | 50.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | + | chr5.1:8293288-8293307 | MS.gene20278:CDS | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | - | chr5.1:8293362-8293381 | None:intergenic | 50.0% | |
| ! | TATTTACCAGGTCTCTGGGG+TGG | - | chr5.1:8293447-8293466 | None:intergenic | 50.0% |
| !! | GGACTTTCTGGTTCGGATCT+CGG | - | chr5.1:8293837-8293856 | None:intergenic | 50.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | - | chr5.1:8293939-8293958 | None:intergenic | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | + | chr5.1:8294030-8294049 | MS.gene20278:CDS | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | - | chr5.1:8293644-8293663 | None:intergenic | 55.0% | |
| AGGGTTTAAGGGTTCCGCCA+CGG | - | chr5.1:8293726-8293745 | None:intergenic | 55.0% | |
| AGTCCGACAGCACCGTTAAC+GGG | - | chr5.1:8293652-8293671 | None:intergenic | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | + | chr5.1:8294031-8294050 | MS.gene20278:CDS | 55.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | + | chr5.1:8293287-8293306 | MS.gene20278:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | - | chr5.1:8293361-8293380 | None:intergenic | 55.0% | |
| GGTAAACGCAAGCGATCAGG+TGG | + | chr5.1:8293874-8293893 | MS.gene20278:CDS | 55.0% | |
| GGTGGTAAACGCAAGCGATC+AGG | + | chr5.1:8293871-8293890 | MS.gene20278:CDS | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | - | chr5.1:8293397-8293416 | None:intergenic | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | - | chr5.1:8293363-8293382 | None:intergenic | 55.0% | |
| GTGTCAAGCGGCGGTTGAAA+CGG | + | chr5.1:8293696-8293715 | MS.gene20278:CDS | 55.0% | |
| GTTGACCAACGGTTTCCGGA+GGG | + | chr5.1:8293957-8293976 | MS.gene20278:CDS | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | + | chr5.1:8293968-8293987 | MS.gene20278:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATCGG+AGG | + | chr5.1:8294039-8294058 | MS.gene20278:CDS | 55.0% | |
| ! | ACGCGTTGACCAACGGTTTC+CGG | + | chr5.1:8293953-8293972 | MS.gene20278:CDS | 55.0% |
| ! | CCACAGAACGCGTTGACCAA+CGG | + | chr5.1:8293946-8293965 | MS.gene20278:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | + | chr5.1:8293661-8293680 | MS.gene20278:CDS | 55.0% |
| ! | GTCCGGTTCATGAGTTCTGG+TGG | + | chr5.1:8293853-8293872 | MS.gene20278:CDS | 55.0% |
| !! | AACCCCGTTAACGGTGCTGT+CGG | + | chr5.1:8293646-8293665 | MS.gene20278:CDS | 55.0% |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | + | chr5.1:8293656-8293675 | MS.gene20278:CDS | 55.0% |
| AAGTCACGTGCAACGACGCG+CGG | + | chr5.1:8293806-8293825 | MS.gene20278:CDS | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | - | chr5.1:8293949-8293968 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | + | chr5.1:8293956-8293975 | MS.gene20278:CDS | 60.0% | |
| GTCCGACAGCACCGTTAACG+GGG | - | chr5.1:8293651-8293670 | None:intergenic | 60.0% | |
| GTTGAAACGGTGCTCCGTGG+CGG | + | chr5.1:8293709-8293728 | MS.gene20278:CDS | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | + | chr5.1:8294023-8294042 | MS.gene20278:CDS | 60.0% | |
| !! | TACCAGGTCTCTGGGGTGGA+GGG | - | chr5.1:8293443-8293462 | None:intergenic | 60.0% |
| !! | TTACCAGGTCTCTGGGGTGG+AGG | - | chr5.1:8293444-8293463 | None:intergenic | 60.0% |
| CTGGCACGTGTGTCAAGCGG+CGG | + | chr5.1:8293687-8293706 | MS.gene20278:CDS | 65.0% | |
| GCGGTTGAAACGGTGCTCCG+TGG | + | chr5.1:8293706-8293725 | MS.gene20278:CDS | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | - | chr5.1:8293990-8294009 | None:intergenic | 65.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | + | chr5.1:8293972-8293991 | MS.gene20278:CDS | 70.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | - | chr5.1:8293975-8293994 | None:intergenic | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | + | chr5.1:8293973-8293992 | MS.gene20278:CDS | 70.0% | |
| GTCCCTCCACCCCAGAGACC+TGG | + | chr5.1:8293438-8293457 | MS.gene20278:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8293276 | 8294113 | 8293276 | ID=MS.gene20278 |
| chr5.1 | mRNA | 8293276 | 8294113 | 8293276 | ID=MS.gene20278.t1;Parent=MS.gene20278 |
| chr5.1 | exon | 8293276 | 8293459 | 8293276 | ID=MS.gene20278.t1.exon1;Parent=MS.gene20278.t1 |
| chr5.1 | CDS | 8293276 | 8293459 | 8293276 | ID=cds.MS.gene20278.t1;Parent=MS.gene20278.t1 |
| chr5.1 | exon | 8293602 | 8294113 | 8293602 | ID=MS.gene20278.t1.exon2;Parent=MS.gene20278.t1 |
| chr5.1 | CDS | 8293602 | 8294113 | 8293602 | ID=cds.MS.gene20278.t1;Parent=MS.gene20278.t1 |
| Gene Sequence |
| Protein sequence |
