Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20616.t1 | XP_024631628.1 | 93.6 | 141 | 9 | 0 | 29 | 169 | 8 | 148 | 3.30E-69 | 271.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20616.t1 | Q9HSF6 | 45.8 | 120 | 65 | 0 | 36 | 155 | 74 | 193 | 3.2e-20 | 99.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20616.t1 | A0A396JEU9 | 93.6 | 141 | 9 | 0 | 29 | 169 | 8 | 148 | 2.4e-69 | 271.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058386 | MS.gene20616 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene061003 | MS.gene20616 | 0.834784 | 2.45E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20616.t1 | AT5G51080 | 53.285 | 137 | 64 | 0 | 30 | 166 | 121 | 257 | 1.16e-44 | 148 |
| MS.gene20616.t1 | AT3G01410 | 49.265 | 136 | 69 | 0 | 31 | 166 | 154 | 289 | 2.76e-44 | 148 |
| MS.gene20616.t1 | AT3G01410 | 49.265 | 136 | 69 | 0 | 31 | 166 | 154 | 289 | 2.76e-44 | 148 |
| MS.gene20616.t1 | AT5G51080 | 53.285 | 137 | 64 | 0 | 30 | 166 | 184 | 320 | 6.94e-44 | 147 |
| MS.gene20616.t1 | AT5G51080 | 53.285 | 137 | 64 | 0 | 30 | 166 | 184 | 320 | 6.94e-44 | 147 |
| MS.gene20616.t1 | AT1G24090 | 52.143 | 140 | 67 | 0 | 27 | 166 | 212 | 351 | 8.18e-41 | 140 |
Find 42 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATAGGTTCCTTAAATT+TGG | 0.076392 | 6.3:-4233761 | None:intergenic |
| TGAGTATAATGGTCTTCTTT+TGG | 0.243282 | 6.3:+4233378 | MS.gene20616:CDS |
| TCTTGTATTGTTGAGTTTGA+TGG | 0.294112 | 6.3:+4233163 | MS.gene20616:CDS |
| CTCTCAGCTTGTTTGCAATC+AGG | 0.296249 | 6.3:+4233453 | MS.gene20616:CDS |
| TGCAACAGTTTGAGGGTTCC+TGG | 0.323750 | 6.3:+4233726 | MS.gene20616:intron |
| TGCATAGGTTCCTTAAATTT+GGG | 0.326607 | 6.3:-4233760 | None:intergenic |
| AAGTCAACAACCCAAATTTA+AGG | 0.331211 | 6.3:+4233750 | MS.gene20616:CDS |
| ATTTGGGTTGTTGACTTTCC+AGG | 0.336100 | 6.3:-4233744 | None:intergenic |
| AATAATTCTGCTGAGTATAA+TGG | 0.382560 | 6.3:+4233367 | MS.gene20616:CDS |
| GCTCCTGCACCAGACCTTCC+AGG | 0.402463 | 6.3:-4233202 | None:intergenic |
| AGAGTAACTTCAAGTCAGTC+AGG | 0.457011 | 6.3:+4233801 | MS.gene20616:CDS |
| GGAGCATCCAGTGGAAATCC+TGG | 0.459158 | 6.3:+4233184 | MS.gene20616:CDS |
| AAAGAAGTTTATGCTTATTG+TGG | 0.461124 | 6.3:+4232037 | None:intergenic |
| TCCGTTCTGCAGATGGGAGT+CGG | 0.461814 | 6.3:+4233230 | MS.gene20616:CDS |
| CATGGCGTCAGCCAAGGACT+TGG | 0.463996 | 6.3:+4233334 | MS.gene20616:CDS |
| CATGAATATGCTCATATCCT+TGG | 0.464886 | 6.3:-4233420 | None:intergenic |
| AGTGGAAATCCTGGAAGGTC+TGG | 0.475520 | 6.3:+4233193 | MS.gene20616:CDS |
| AGTTTATGCTTATTGTGGTT+AGG | 0.477190 | 6.3:+4232042 | None:intergenic |
| TATGTCTCTTTATAGGTCCA+TGG | 0.481724 | 6.3:+4233316 | MS.gene20616:intron |
| TCAGGGTCGAACATGTTCCT+AGG | 0.482331 | 6.3:+4233819 | MS.gene20616:CDS |
| CCGTTCTGCAGATGGGAGTC+GGG | 0.496764 | 6.3:+4233231 | MS.gene20616:CDS |
| TTGTTTGAGTGCCAAGTCCT+TGG | 0.498512 | 6.3:-4233345 | None:intergenic |
| GAACCTATGCAATGAGGCTG+TGG | 0.532829 | 6.3:+4233772 | MS.gene20616:CDS |
| GCTCCACAGCCTCATTGCAT+AGG | 0.541509 | 6.3:-4233775 | None:intergenic |
| CAAGTCCTTGGCTGACGCCA+TGG | 0.543645 | 6.3:-4233333 | None:intergenic |
| CTGTTATCCGTTCTGCAGAT+GGG | 0.545170 | 6.3:+4233224 | MS.gene20616:CDS |
| GCTGTTATCCGTTCTGCAGA+TGG | 0.548893 | 6.3:+4233223 | MS.gene20616:CDS |
| AGACCTTCCAGGATTTCCAC+TGG | 0.556723 | 6.3:-4233191 | None:intergenic |
| TAGGTCCATGGCGTCAGCCA+AGG | 0.557191 | 6.3:+4233328 | MS.gene20616:intron |
| AATCCTGGAAGGTCTGGTGC+AGG | 0.565510 | 6.3:+4233199 | MS.gene20616:CDS |
| GTAGTAATATTCAACTTCGC+CGG | 0.574495 | 6.3:-4234427 | None:intergenic |
| CTTGTGAAGTCTAACCTCCA+AGG | 0.579450 | 6.3:-4234214 | None:intergenic |
| CTGAAAGAAGCTAGCAACCA+AGG | 0.584237 | 6.3:+4233403 | MS.gene20616:CDS |
| CAGGGTCGAACATGTTCCTA+GGG | 0.587867 | 6.3:+4233820 | MS.gene20616:CDS |
| CCCGACTCCCATCTGCAGAA+CGG | 0.635424 | 6.3:-4233231 | None:intergenic |
| TTTAAGGAACCTATGCAATG+AGG | 0.642695 | 6.3:+4233766 | MS.gene20616:CDS |
| GAGTTTGATGGAGCATCCAG+TGG | 0.644852 | 6.3:+4233175 | MS.gene20616:CDS |
| GCTGATGCTCAAGCAAATCG+CGG | 0.646058 | 6.3:+4234185 | MS.gene20616:CDS |
| GAGTAACTTCAAGTCAGTCA+GGG | 0.650851 | 6.3:+4233802 | MS.gene20616:CDS |
| CATCCAGTGGAAATCCTGGA+AGG | 0.657104 | 6.3:+4233188 | MS.gene20616:CDS |
| TATGAGCATATTCATGTCCG+AGG | 0.670788 | 6.3:+4233427 | MS.gene20616:CDS |
| AAACAAGCTGAGAGTCACCT+CGG | 0.700596 | 6.3:-4233444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAAAAAAAATAT+AGG | - | chr6.3:4234405-4234424 | None:intergenic | 10.0% |
| !!! | ATTTACTATCATATTTTTAT+TGG | + | chr6.3:4233700-4233719 | MS.gene20616:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTTGTGAA+AGG | - | chr6.3:4232489-4232508 | None:intergenic | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr6.3:4232160-4232179 | MS.gene20616:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGTGAAA+GGG | - | chr6.3:4232488-4232507 | None:intergenic | 10.0% |
| !! | ATAAAAAAATCAACGATTAT+AGG | - | chr6.3:4232384-4232403 | None:intergenic | 15.0% |
| !! | ATTGTTTACAAAATATTACA+TGG | + | chr6.3:4233564-4233583 | MS.gene20616:intron | 15.0% |
| !!! | AATTATTTAAATTTTTCGGT+TGG | + | chr6.3:4232163-4232182 | MS.gene20616:intron | 15.0% |
| !!! | ATTATTTAAATTTTTCGGTT+GGG | + | chr6.3:4232164-4232183 | MS.gene20616:intron | 15.0% |
| !!! | GTTGATTTTTTTATTTTTCT+GGG | + | chr6.3:4232390-4232409 | MS.gene20616:intron | 15.0% |
| !!! | TGTAATATTTTGTAAACAAT+TGG | - | chr6.3:4233564-4233583 | None:intergenic | 15.0% |
| !!! | TTTATTTTCATGTTTGTATT+TGG | + | chr6.3:4234354-4234373 | MS.gene20616:intron | 15.0% |
| !! | AAAGTTATGTAAGTTATTTG+TGG | + | chr6.3:4232650-4232669 | MS.gene20616:intron | 20.0% |
| !! | ATAATGCAAAAATGATTTGA+GGG | - | chr6.3:4233269-4233288 | None:intergenic | 20.0% |
| !! | TATAATGCAAAAATGATTTG+AGG | - | chr6.3:4233270-4233289 | None:intergenic | 20.0% |
| !! | TGCAATTCTAAGTAATTATA+TGG | + | chr6.3:4233592-4233611 | MS.gene20616:intron | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr6.3:4232277-4232296 | MS.gene20616:intron | 20.0% |
| !!! | ATGAAAATTTTGTCATGTTT+AGG | + | chr6.3:4232591-4232610 | MS.gene20616:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | + | chr6.3:4232278-4232297 | MS.gene20616:intron | 20.0% |
| !!! | ATTTTTTTATTTTTCTGGGT+GGG | + | chr6.3:4232394-4232413 | MS.gene20616:intron | 20.0% |
| !!! | CGTTGATTTTTTTATTTTTC+TGG | + | chr6.3:4232389-4232408 | MS.gene20616:intron | 20.0% |
| !!! | TACAATTTTATGTCTGTTTT+TGG | - | chr6.3:4232228-4232247 | None:intergenic | 20.0% |
| !!! | TTTTCAACAGTTAATTTTAG+TGG | - | chr6.3:4232108-4232127 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAAAGCAGCTT+TGG | - | chr6.3:4234308-4234327 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTTTGCAGC+CGG | + | chr6.3:4234408-4234427 | MS.gene20616:intron | 20.0% |
| ! | AACACTTTATGTCTCTTTAT+AGG | + | chr6.3:4233309-4233328 | MS.gene20616:intron | 25.0% |
| ! | AATAATTCTGCTGAGTATAA+TGG | + | chr6.3:4233367-4233386 | MS.gene20616:CDS | 25.0% |
| ! | AATTTAAGTGGTACTTTGTA+AGG | - | chr6.3:4233486-4233505 | None:intergenic | 25.0% |
| ! | ACACATTATCTTATAGTTGT+AGG | + | chr6.3:4232929-4232948 | MS.gene20616:intron | 25.0% |
| ! | ATCAAATGACTAATTTAGAG+AGG | - | chr6.3:4234025-4234044 | None:intergenic | 25.0% |
| ! | ATTTAAGTGGTACTTTGTAA+GGG | - | chr6.3:4233485-4233504 | None:intergenic | 25.0% |
| ! | TAAGAGATAAACATTACTAG+TGG | - | chr6.3:4232452-4232471 | None:intergenic | 25.0% |
| ! | TTTCATGTTTGTATTTGGAA+GGG | + | chr6.3:4234359-4234378 | MS.gene20616:intron | 25.0% |
| !! | AACTTTTATAGCCATACATT+AGG | - | chr6.3:4233034-4233053 | None:intergenic | 25.0% |
| !! | CATGATAAGTATTTTATCAG+AGG | + | chr6.3:4233115-4233134 | MS.gene20616:intron | 25.0% |
| !! | CATTTGAAGTGTAAATTACA+TGG | - | chr6.3:4233007-4233026 | None:intergenic | 25.0% |
| !! | TTTTCATGTTTGTATTTGGA+AGG | + | chr6.3:4234358-4234377 | MS.gene20616:intron | 25.0% |
| !!! | CGTGTTTTTTTATTGTTGAA+GGG | + | chr6.3:4234149-4234168 | MS.gene20616:intron | 25.0% |
| !!! | GATTTTTTTATTTTTCTGGG+TGG | + | chr6.3:4232393-4232412 | MS.gene20616:intron | 25.0% |
| !!! | TCGTGTTTTTTTATTGTTGA+AGG | + | chr6.3:4234148-4234167 | MS.gene20616:intron | 25.0% |
| !!! | TTATTGCTATTTCGTTTACT+TGG | - | chr6.3:4234278-4234297 | None:intergenic | 25.0% |
| !!! | TTGTTCTGGAAAACTAAAAA+AGG | + | chr6.3:4233933-4233952 | MS.gene20616:intron | 25.0% |
| !!! | TTTATGTCTGTTTTTGGTTT+TGG | - | chr6.3:4232222-4232241 | None:intergenic | 25.0% |
| !!! | TTTGATCCACATGTTTTAAT+AGG | + | chr6.3:4234039-4234058 | MS.gene20616:intron | 25.0% |
| AAGTCAACAACCCAAATTTA+AGG | + | chr6.3:4233750-4233769 | MS.gene20616:CDS | 30.0% | |
| ATCTGAACACTATCTAACAA+AGG | - | chr6.3:4233639-4233658 | None:intergenic | 30.0% | |
| GAAGCCAGAAAAAAAAAGTT+TGG | + | chr6.3:4232079-4232098 | MS.gene20616:intron | 30.0% | |
| TCAAATGTCATCCTAATGTA+TGG | + | chr6.3:4233020-4233039 | MS.gene20616:intron | 30.0% | |
| TCATTCAGATGCAATTTAAG+TGG | - | chr6.3:4233498-4233517 | None:intergenic | 30.0% | |
| TCTTGTATTGTTGAGTTTGA+TGG | + | chr6.3:4233163-4233182 | MS.gene20616:CDS | 30.0% | |
| TGCATAGGTTCCTTAAATTT+GGG | - | chr6.3:4233763-4233782 | None:intergenic | 30.0% | |
| TTCATGTTTGTATTTGGAAG+GGG | + | chr6.3:4234360-4234379 | MS.gene20616:intron | 30.0% | |
| TTGCATAGGTTCCTTAAATT+TGG | - | chr6.3:4233764-4233783 | None:intergenic | 30.0% | |
| ! | ACTTTTACACGATTCTAATC+TGG | + | chr6.3:4232621-4232640 | MS.gene20616:CDS | 30.0% |
| ! | AGACTTTTCTGAGTTCTTAT+AGG | + | chr6.3:4234235-4234254 | MS.gene20616:intron | 30.0% |
| ! | AGTATAATGGTCTTCTTTTG+GGG | + | chr6.3:4233380-4233399 | MS.gene20616:CDS | 30.0% |
| ! | CGAAATTGATTTCCTCTATA+AGG | + | chr6.3:4233057-4233076 | MS.gene20616:intron | 30.0% |
| ! | CTTTTACACGATTCTAATCT+GGG | + | chr6.3:4232622-4232641 | MS.gene20616:CDS | 30.0% |
| ! | GAGTATAATGGTCTTCTTTT+GGG | + | chr6.3:4233379-4233398 | MS.gene20616:CDS | 30.0% |
| ! | GTTTTGCCTATTAAAACATG+TGG | - | chr6.3:4234048-4234067 | None:intergenic | 30.0% |
| ! | TGAGTATAATGGTCTTCTTT+TGG | + | chr6.3:4233378-4233397 | MS.gene20616:CDS | 30.0% |
| !! | TTTGTGTCCGTTTTAGATTT+CGG | - | chr6.3:4232336-4232355 | None:intergenic | 30.0% |
| !!! | TAAGCCTAGTTTTAGTGTAT+GGG | + | chr6.3:4232735-4232754 | MS.gene20616:intron | 30.0% |
| !!! | TTAAGCCTAGTTTTAGTGTA+TGG | + | chr6.3:4232734-4232753 | MS.gene20616:intron | 30.0% |
| ATACCCCATACACTAAAACT+AGG | - | chr6.3:4232742-4232761 | None:intergenic | 35.0% | |
| CATGAATATGCTCATATCCT+TGG | - | chr6.3:4233423-4233442 | None:intergenic | 35.0% | |
| CCAGTCATATTTAACTCGTA+AGG | + | chr6.3:4233085-4233104 | MS.gene20616:intron | 35.0% | |
| CCTTACGAGTTAAATATGAC+TGG | - | chr6.3:4233088-4233107 | None:intergenic | 35.0% | |
| GAACAAAACACAATCAAGAG+AGG | - | chr6.3:4233919-4233938 | None:intergenic | 35.0% | |
| GAGATAAACATTACTAGTGG+CGG | - | chr6.3:4232449-4232468 | None:intergenic | 35.0% | |
| GCATAAAATCTACGCTAAAG+TGG | + | chr6.3:4232549-4232568 | MS.gene20616:intron | 35.0% | |
| GCCAGAAAAAAAAAGTTTGG+AGG | + | chr6.3:4232082-4232101 | MS.gene20616:intron | 35.0% | |
| GGATCAACCGAAATCTAAAA+CGG | + | chr6.3:4232326-4232345 | MS.gene20616:intron | 35.0% | |
| GGTATACACTTTGTCTCATT+TGG | + | chr6.3:4233841-4233860 | MS.gene20616:intron | 35.0% | |
| GTAGTAATATTCAACTTCGC+CGG | - | chr6.3:4234430-4234449 | None:intergenic | 35.0% | |
| TATGTCTCTTTATAGGTCCA+TGG | + | chr6.3:4233316-4233335 | MS.gene20616:intron | 35.0% | |
| TGGAAAACTAAAAAAGGTCG+AGG | + | chr6.3:4233939-4233958 | MS.gene20616:intron | 35.0% | |
| TTTAAGGAACCTATGCAATG+AGG | + | chr6.3:4233766-4233785 | MS.gene20616:CDS | 35.0% | |
| ! | TGTGGTTAGGTATTGTTATG+TGG | + | chr6.3:4232055-4232074 | MS.gene20616:intron | 35.0% |
| !! | CTCTTGATTGTGTTTTGTTC+TGG | + | chr6.3:4233919-4233938 | MS.gene20616:intron | 35.0% |
| !!! | AAGCCTAGTTTTAGTGTATG+GGG | + | chr6.3:4232736-4232755 | MS.gene20616:intron | 35.0% |
| !!! | AAGCTATTTTTCCACATGAG+TGG | + | chr6.3:4232824-4232843 | MS.gene20616:intron | 35.0% |
| !!! | ATTGGTTTTGCAACAGTTTG+AGG | + | chr6.3:4233718-4233737 | MS.gene20616:intron | 35.0% |
| !!! | GCCTCCAAACTTTTTTTTTC+TGG | - | chr6.3:4232086-4232105 | None:intergenic | 35.0% |
| !!! | TTGGTTTTGCAACAGTTTGA+GGG | + | chr6.3:4233719-4233738 | MS.gene20616:intron | 35.0% |
| AGAGTAACTTCAAGTCAGTC+AGG | + | chr6.3:4233801-4233820 | MS.gene20616:CDS | 40.0% | |
| GAGTAACTTCAAGTCAGTCA+GGG | + | chr6.3:4233802-4233821 | MS.gene20616:CDS | 40.0% | |
| TACACCACTTTGCTGGAATT+TGG | + | chr6.3:4232191-4232210 | MS.gene20616:intron | 40.0% | |
| TATGAGCATATTCATGTCCG+AGG | + | chr6.3:4233427-4233446 | MS.gene20616:CDS | 40.0% | |
| TGAGACAAAGTGTATACCCT+AGG | - | chr6.3:4233839-4233858 | None:intergenic | 40.0% | |
| TGATCCAAATTCCAGCAAAG+TGG | - | chr6.3:4232198-4232217 | None:intergenic | 40.0% | |
| !! | ATTTGGGTTGTTGACTTTCC+AGG | - | chr6.3:4233747-4233766 | None:intergenic | 40.0% |
| AAACAAGCTGAGAGTCACCT+CGG | - | chr6.3:4233447-4233466 | None:intergenic | 45.0% | |
| CTACGCTAAAGTGGTGTGTA+AGG | + | chr6.3:4232558-4232577 | MS.gene20616:intron | 45.0% | |
| CTGAAAGAAGCTAGCAACCA+AGG | + | chr6.3:4233403-4233422 | MS.gene20616:CDS | 45.0% | |
| CTGTTATCCGTTCTGCAGAT+GGG | + | chr6.3:4233224-4233243 | MS.gene20616:CDS | 45.0% | |
| CTTGTGAAGTCTAACCTCCA+AGG | - | chr6.3:4234217-4234236 | None:intergenic | 45.0% | |
| TACACCACTTTGCGGGAATT+TGG | + | chr6.3:4232305-4232324 | MS.gene20616:intron | 45.0% | |
| TGATCCAAATTCCCGCAAAG+TGG | - | chr6.3:4232312-4232331 | None:intergenic | 45.0% | |
| TTGTTTGAGTGCCAAGTCCT+TGG | - | chr6.3:4233348-4233367 | None:intergenic | 45.0% | |
| ! | CTCTCAGCTTGTTTGCAATC+AGG | + | chr6.3:4233453-4233472 | MS.gene20616:CDS | 45.0% |
| !! | AAGAGTGTTGTCCACTCATG+TGG | - | chr6.3:4232838-4232857 | None:intergenic | 45.0% |
| !!! | TTATTTTTCTGGGTGGGCTG+TGG | + | chr6.3:4232400-4232419 | MS.gene20616:intron | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr6.3:4232156-4232175 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr6.3:4232159-4232178 | MS.gene20616:intron | 5.0% |
| AATCGCGGCAAAAACCTTGG+AGG | + | chr6.3:4234200-4234219 | MS.gene20616:CDS | 50.0% | |
| AGACCTTCCAGGATTTCCAC+TGG | - | chr6.3:4233194-4233213 | None:intergenic | 50.0% | |
| AGTGGAAATCCTGGAAGGTC+TGG | + | chr6.3:4233193-4233212 | MS.gene20616:CDS | 50.0% | |
| ATTCCCGCAAAGTGGTGTAG+TGG | - | chr6.3:4232304-4232323 | None:intergenic | 50.0% | |
| CAGGGTCGAACATGTTCCTA+GGG | + | chr6.3:4233820-4233839 | MS.gene20616:CDS | 50.0% | |
| CATCCAGTGGAAATCCTGGA+AGG | + | chr6.3:4233188-4233207 | MS.gene20616:CDS | 50.0% | |
| GAACCTATGCAATGAGGCTG+TGG | + | chr6.3:4233772-4233791 | MS.gene20616:CDS | 50.0% | |
| GCAAATCGCGGCAAAAACCT+TGG | + | chr6.3:4234197-4234216 | MS.gene20616:CDS | 50.0% | |
| GCTGATGCTCAAGCAAATCG+CGG | + | chr6.3:4234185-4234204 | MS.gene20616:CDS | 50.0% | |
| GCTGTTATCCGTTCTGCAGA+TGG | + | chr6.3:4233223-4233242 | MS.gene20616:CDS | 50.0% | |
| TCAGGGTCGAACATGTTCCT+AGG | + | chr6.3:4233819-4233838 | MS.gene20616:CDS | 50.0% | |
| TGACTGGCAACGCCTTATAG+AGG | - | chr6.3:4233072-4233091 | None:intergenic | 50.0% | |
| TGCAACAGTTTGAGGGTTCC+TGG | + | chr6.3:4233726-4233745 | MS.gene20616:intron | 50.0% | |
| ! | GAGTTTGATGGAGCATCCAG+TGG | + | chr6.3:4233175-4233194 | MS.gene20616:CDS | 50.0% |
| AATCCTGGAAGGTCTGGTGC+AGG | + | chr6.3:4233199-4233218 | MS.gene20616:CDS | 55.0% | |
| GCTCCACAGCCTCATTGCAT+AGG | - | chr6.3:4233778-4233797 | None:intergenic | 55.0% | |
| GGGTCACTACACCACTTTGC+TGG | + | chr6.3:4232184-4232203 | MS.gene20616:intron | 55.0% | |
| TCCGTTCTGCAGATGGGAGT+CGG | + | chr6.3:4233230-4233249 | MS.gene20616:CDS | 55.0% | |
| TGGGCCACTACACCACTTTG+CGG | + | chr6.3:4232297-4232316 | MS.gene20616:intron | 55.0% | |
| ! | GGAGCATCCAGTGGAAATCC+TGG | + | chr6.3:4233184-4233203 | MS.gene20616:CDS | 55.0% |
| CAAGTCCTTGGCTGACGCCA+TGG | - | chr6.3:4233336-4233355 | None:intergenic | 60.0% | |
| CATGGCGTCAGCCAAGGACT+TGG | + | chr6.3:4233334-4233353 | MS.gene20616:CDS | 60.0% | |
| CCCGACTCCCATCTGCAGAA+CGG | - | chr6.3:4233234-4233253 | None:intergenic | 60.0% | |
| CCGTTCTGCAGATGGGAGTC+GGG | + | chr6.3:4233231-4233250 | MS.gene20616:CDS | 60.0% | |
| GGGCCACTACACCACTTTGC+GGG | + | chr6.3:4232298-4232317 | MS.gene20616:intron | 60.0% | |
| TAGGTCCATGGCGTCAGCCA+AGG | + | chr6.3:4233328-4233347 | MS.gene20616:intron | 60.0% | |
| AGCCCTTCGTAGGCTGGGGT+GGG | - | chr6.3:4232426-4232445 | None:intergenic | 65.0% | |
| GCTCCTGCACCAGACCTTCC+AGG | - | chr6.3:4233205-4233224 | None:intergenic | 65.0% | |
| ! | CTAGTGGCGGAGCCCTTCGT+AGG | - | chr6.3:4232436-4232455 | None:intergenic | 65.0% |
| GAGCCCTTCGTAGGCTGGGG+TGG | - | chr6.3:4232427-4232446 | None:intergenic | 70.0% | |
| GCGGAGCCCTTCGTAGGCTG+GGG | - | chr6.3:4232430-4232449 | None:intergenic | 70.0% | |
| GGCCCACCCCAGCCTACGAA+GGG | + | chr6.3:4232421-4232440 | MS.gene20616:intron | 70.0% | |
| GGCGGAGCCCTTCGTAGGCT+GGG | - | chr6.3:4232431-4232450 | None:intergenic | 70.0% | |
| TGGCCCACCCCAGCCTACGA+AGG | + | chr6.3:4232420-4232439 | MS.gene20616:intron | 70.0% | |
| TGGCGGAGCCCTTCGTAGGC+TGG | - | chr6.3:4232432-4232451 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 4232047 | 4234452 | 4232047 | ID=MS.gene20616 |
| chr6.3 | mRNA | 4232047 | 4234452 | 4232047 | ID=MS.gene20616.t1;Parent=MS.gene20616 |
| chr6.3 | exon | 4232047 | 4232063 | 4232047 | ID=MS.gene20616.t1.exon1;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4232047 | 4232063 | 4232047 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4232613 | 4232657 | 4232613 | ID=MS.gene20616.t1.exon2;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4232613 | 4232657 | 4232613 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4233135 | 4233252 | 4233135 | ID=MS.gene20616.t1.exon3;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4233135 | 4233252 | 4233135 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4233331 | 4233474 | 4233331 | ID=MS.gene20616.t1.exon4;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4233331 | 4233474 | 4233331 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4233734 | 4233841 | 4233734 | ID=MS.gene20616.t1.exon5;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4233734 | 4233841 | 4233734 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4234170 | 4234221 | 4234170 | ID=MS.gene20616.t1.exon6;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4234170 | 4234221 | 4234170 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| chr6.3 | exon | 4234427 | 4234452 | 4234427 | ID=MS.gene20616.t1.exon7;Parent=MS.gene20616.t1 |
| chr6.3 | CDS | 4234427 | 4234452 | 4234427 | ID=cds.MS.gene20616.t1;Parent=MS.gene20616.t1 |
| Gene Sequence |
| Protein sequence |
