Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061003.t1 | XP_013466651.1 | 96.6 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 8.10E-189 | 669.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061003.t1 | Q38909 | 65.7 | 315 | 106 | 2 | 9 | 321 | 7 | 321 | 1.5e-122 | 440.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061003.t1 | A0A072VFV6 | 96.6 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 5.9e-189 | 669.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05777 | MS.gene061003 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene061003 | MS.gene072588 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene061003 | MS.gene20616 | 0.834784 | 2.45E-56 | -1.69E-46 |
| MS.gene061003 | MS.gene27942 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene061003 | MS.gene28551 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene061003 | MS.gene47901 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene061003 | MS.gene54698 | 0.837565 | 4.82E-57 | -1.69E-46 |
| MS.gene061003 | MS.gene54709 | -0.8002 | 1.61E-48 | -1.69E-46 |
| MS.gene061003 | MS.gene57117 | 0.820667 | 6.08E-53 | -1.69E-46 |
| MS.gene061003 | MS.gene77771 | 0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene061003 | MS.gene82993 | 0.856164 | 3.87E-62 | -1.69E-46 |
| MS.gene061003 | MS.gene87342 | 0.813405 | 2.60E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061003.t1 | MTR_1g033420 | 96.646 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 0.0 | 672 |
| MS.gene061003.t1 | MTR_5g029100 | 57.639 | 288 | 117 | 2 | 27 | 309 | 36 | 323 | 1.25e-120 | 351 |
| MS.gene061003.t1 | MTR_5g029100 | 55.957 | 277 | 105 | 3 | 38 | 309 | 28 | 292 | 2.59e-107 | 316 |
| MS.gene061003.t1 | MTR_8g090100 | 50.000 | 286 | 131 | 5 | 21 | 299 | 9 | 289 | 4.20e-97 | 290 |
| MS.gene061003.t1 | MTR_8g064180 | 44.853 | 272 | 144 | 1 | 26 | 291 | 39 | 310 | 1.94e-83 | 255 |
| MS.gene061003.t1 | MTR_4g057450 | 42.754 | 276 | 143 | 5 | 19 | 291 | 41 | 304 | 4.05e-72 | 226 |
| MS.gene061003.t1 | MTR_2g095800 | 39.799 | 299 | 159 | 7 | 7 | 291 | 18 | 309 | 1.82e-67 | 214 |
| MS.gene061003.t1 | MTR_1g063020 | 39.057 | 297 | 160 | 7 | 8 | 291 | 6 | 294 | 7.82e-66 | 209 |
| MS.gene061003.t1 | MTR_7g102260 | 39.726 | 292 | 161 | 6 | 7 | 291 | 8 | 291 | 2.01e-64 | 206 |
| MS.gene061003.t1 | MTR_8g013055 | 40.530 | 264 | 149 | 4 | 31 | 292 | 29 | 286 | 9.33e-64 | 204 |
| MS.gene061003.t1 | MTR_6g033085 | 37.584 | 298 | 167 | 9 | 4 | 294 | 5 | 290 | 5.01e-60 | 194 |
| MS.gene061003.t1 | MTR_4g097640 | 43.621 | 243 | 130 | 6 | 52 | 292 | 51 | 288 | 2.30e-58 | 190 |
| MS.gene061003.t1 | MTR_4g097670 | 43.621 | 243 | 130 | 6 | 52 | 292 | 51 | 288 | 2.30e-58 | 190 |
| MS.gene061003.t1 | MTR_7g084750 | 37.410 | 278 | 161 | 6 | 22 | 294 | 21 | 290 | 2.59e-58 | 190 |
| MS.gene061003.t1 | MTR_4g097700 | 40.892 | 269 | 150 | 7 | 28 | 292 | 62 | 325 | 4.48e-58 | 190 |
| MS.gene061003.t1 | MTR_4g045853 | 38.047 | 297 | 161 | 8 | 7 | 292 | 5 | 289 | 7.90e-58 | 189 |
| MS.gene061003.t1 | MTR_6g033055 | 36.644 | 292 | 167 | 7 | 12 | 294 | 8 | 290 | 1.72e-57 | 187 |
| MS.gene061003.t1 | MTR_2g089140 | 37.417 | 302 | 164 | 8 | 1 | 292 | 1 | 287 | 3.84e-57 | 187 |
| MS.gene061003.t1 | MTR_7g084760 | 36.395 | 294 | 174 | 7 | 8 | 295 | 5 | 291 | 5.26e-57 | 186 |
| MS.gene061003.t1 | MTR_7g084770 | 36.897 | 290 | 170 | 6 | 11 | 294 | 8 | 290 | 1.68e-56 | 185 |
| MS.gene061003.t1 | MTR_5g091730 | 37.544 | 285 | 157 | 8 | 14 | 291 | 8 | 278 | 8.31e-56 | 183 |
| MS.gene061003.t1 | MTR_1g105495 | 35.606 | 264 | 165 | 4 | 33 | 293 | 35 | 296 | 4.68e-54 | 179 |
| MS.gene061003.t1 | MTR_1g105900 | 36.842 | 266 | 157 | 7 | 33 | 293 | 34 | 293 | 5.48e-54 | 179 |
| MS.gene061003.t1 | MTR_4g128410 | 40.310 | 258 | 137 | 8 | 41 | 291 | 33 | 280 | 1.20e-53 | 177 |
| MS.gene061003.t1 | MTR_4g126920 | 36.981 | 265 | 157 | 6 | 33 | 293 | 25 | 283 | 1.33e-53 | 177 |
| MS.gene061003.t1 | MTR_7g056090 | 35.374 | 294 | 169 | 8 | 7 | 293 | 4 | 283 | 1.06e-52 | 175 |
| MS.gene061003.t1 | MTR_7g093530 | 37.500 | 256 | 151 | 5 | 41 | 293 | 32 | 281 | 1.25e-51 | 172 |
| MS.gene061003.t1 | MTR_4g128400 | 37.500 | 256 | 151 | 5 | 41 | 293 | 36 | 285 | 2.42e-51 | 172 |
| MS.gene061003.t1 | MTR_4g128570 | 35.154 | 293 | 157 | 8 | 4 | 292 | 10 | 273 | 3.63e-51 | 171 |
| MS.gene061003.t1 | MTR_2g089140 | 40.175 | 229 | 122 | 6 | 74 | 292 | 1 | 224 | 1.80e-50 | 167 |
| MS.gene061003.t1 | MTR_2g049130 | 33.455 | 275 | 168 | 8 | 7 | 278 | 6 | 268 | 1.94e-50 | 169 |
| MS.gene061003.t1 | MTR_3g089540 | 36.842 | 266 | 158 | 6 | 33 | 296 | 30 | 287 | 6.38e-50 | 168 |
| MS.gene061003.t1 | MTR_4g128580 | 37.828 | 267 | 153 | 7 | 33 | 292 | 26 | 286 | 7.69e-50 | 168 |
| MS.gene061003.t1 | MTR_2g049030 | 33.106 | 293 | 172 | 10 | 6 | 291 | 1 | 276 | 8.00e-50 | 167 |
| MS.gene061003.t1 | MTR_3g084630 | 37.165 | 261 | 151 | 6 | 33 | 291 | 28 | 277 | 5.03e-49 | 166 |
| MS.gene061003.t1 | MTR_3g084620 | 37.165 | 261 | 151 | 6 | 33 | 291 | 28 | 277 | 5.78e-49 | 165 |
| MS.gene061003.t1 | MTR_6g088320 | 32.993 | 294 | 168 | 10 | 10 | 291 | 7 | 283 | 9.98e-49 | 165 |
| MS.gene061003.t1 | MTR_2g038860 | 36.782 | 261 | 149 | 6 | 41 | 292 | 34 | 287 | 2.37e-48 | 164 |
| MS.gene061003.t1 | MTR_2g038705 | 36.782 | 261 | 149 | 6 | 41 | 292 | 34 | 287 | 2.37e-48 | 164 |
| MS.gene061003.t1 | MTR_8g102910 | 35.632 | 261 | 154 | 7 | 37 | 291 | 27 | 279 | 4.35e-46 | 158 |
| MS.gene061003.t1 | MTR_8g081040 | 35.632 | 261 | 156 | 5 | 33 | 291 | 31 | 281 | 5.02e-46 | 157 |
| MS.gene061003.t1 | MTR_8g102220 | 35.632 | 261 | 143 | 7 | 33 | 291 | 29 | 266 | 1.83e-45 | 156 |
| MS.gene061003.t1 | MTR_4g128590 | 36.239 | 218 | 125 | 6 | 82 | 291 | 64 | 275 | 2.23e-40 | 143 |
| MS.gene061003.t1 | MTR_8g032640 | 36.269 | 193 | 109 | 6 | 37 | 228 | 19 | 198 | 2.39e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061003.t1 | AT1G14720 | 65.714 | 315 | 106 | 2 | 9 | 321 | 7 | 321 | 1.42e-158 | 446 |
| MS.gene061003.t1 | AT2G01850 | 63.190 | 326 | 116 | 3 | 1 | 324 | 1 | 324 | 4.86e-156 | 440 |
| MS.gene061003.t1 | AT1G32170 | 55.663 | 309 | 130 | 4 | 5 | 310 | 8 | 312 | 3.81e-122 | 355 |
| MS.gene061003.t1 | AT4G18990 | 53.947 | 304 | 125 | 3 | 27 | 316 | 34 | 336 | 6.38e-111 | 327 |
| MS.gene061003.t1 | AT4G18990 | 52.586 | 232 | 95 | 3 | 99 | 316 | 32 | 262 | 1.60e-81 | 249 |
| MS.gene061003.t1 | AT1G10550 | 42.657 | 286 | 152 | 2 | 16 | 291 | 26 | 309 | 2.01e-80 | 247 |
| MS.gene061003.t1 | AT4G13090 | 42.857 | 294 | 154 | 6 | 6 | 291 | 1 | 288 | 1.47e-72 | 226 |
| MS.gene061003.t1 | AT4G13080 | 38.776 | 294 | 171 | 4 | 1 | 291 | 4 | 291 | 7.76e-69 | 217 |
| MS.gene061003.t1 | AT3G25050 | 39.175 | 291 | 161 | 6 | 10 | 291 | 6 | 289 | 3.29e-66 | 210 |
| MS.gene061003.t1 | AT3G44990 | 39.855 | 276 | 155 | 5 | 19 | 291 | 26 | 293 | 3.84e-64 | 205 |
| MS.gene061003.t1 | AT5G13870 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 4.67e-64 | 204 |
| MS.gene061003.t1 | AT5G13870 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 4.67e-64 | 204 |
| MS.gene061003.t1 | AT5G13870 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 4.67e-64 | 204 |
| MS.gene061003.t1 | AT5G65730 | 41.319 | 288 | 155 | 7 | 8 | 291 | 13 | 290 | 9.04e-64 | 204 |
| MS.gene061003.t1 | AT2G36870 | 38.333 | 300 | 164 | 6 | 6 | 291 | 5 | 297 | 7.16e-63 | 202 |
| MS.gene061003.t1 | AT4G37800 | 41.445 | 263 | 143 | 6 | 33 | 291 | 34 | 289 | 1.35e-62 | 201 |
| MS.gene061003.t1 | AT2G06850 | 39.796 | 294 | 161 | 8 | 6 | 294 | 11 | 293 | 2.47e-62 | 200 |
| MS.gene061003.t1 | AT4G03210 | 40.530 | 264 | 144 | 6 | 33 | 291 | 29 | 284 | 5.08e-59 | 191 |
| MS.gene061003.t1 | AT1G11545 | 35.667 | 300 | 168 | 7 | 7 | 293 | 14 | 301 | 9.87e-57 | 186 |
| MS.gene061003.t1 | AT4G03210 | 41.558 | 231 | 126 | 4 | 65 | 291 | 31 | 256 | 8.17e-56 | 182 |
| MS.gene061003.t1 | AT2G06850 | 41.949 | 236 | 126 | 5 | 63 | 294 | 5 | 233 | 9.36e-55 | 179 |
| MS.gene061003.t1 | AT4G25810 | 39.382 | 259 | 142 | 8 | 41 | 292 | 34 | 284 | 2.06e-53 | 177 |
| MS.gene061003.t1 | AT5G57560 | 35.959 | 292 | 169 | 7 | 7 | 292 | 3 | 282 | 1.77e-52 | 174 |
| MS.gene061003.t1 | AT3G23730 | 36.981 | 265 | 156 | 5 | 33 | 291 | 27 | 286 | 9.87e-51 | 170 |
| MS.gene061003.t1 | AT5G57550 | 37.023 | 262 | 153 | 7 | 33 | 291 | 30 | 282 | 1.76e-50 | 169 |
| MS.gene061003.t1 | AT4G30270 | 35.294 | 289 | 159 | 7 | 10 | 295 | 6 | 269 | 2.80e-50 | 168 |
| MS.gene061003.t1 | AT4G14130 | 37.405 | 262 | 155 | 6 | 33 | 291 | 29 | 284 | 2.65e-49 | 166 |
| MS.gene061003.t1 | AT2G14620 | 37.052 | 251 | 143 | 8 | 50 | 293 | 54 | 296 | 3.98e-49 | 166 |
| MS.gene061003.t1 | AT2G18800 | 34.965 | 286 | 158 | 6 | 33 | 299 | 28 | 304 | 6.21e-49 | 166 |
| MS.gene061003.t1 | AT5G48070 | 37.500 | 248 | 142 | 7 | 47 | 291 | 44 | 281 | 1.35e-48 | 164 |
| MS.gene061003.t1 | AT4G28850 | 33.916 | 286 | 174 | 9 | 14 | 291 | 9 | 287 | 4.14e-48 | 163 |
| MS.gene061003.t1 | AT5G57530 | 36.822 | 258 | 152 | 7 | 41 | 294 | 35 | 285 | 1.36e-47 | 162 |
| MS.gene061003.t1 | AT4G30290 | 39.655 | 232 | 125 | 7 | 64 | 291 | 56 | 276 | 3.19e-47 | 160 |
| MS.gene061003.t1 | AT4G30280 | 38.528 | 231 | 129 | 6 | 64 | 291 | 61 | 281 | 3.45e-47 | 160 |
| MS.gene061003.t1 | AT5G57540 | 35.338 | 266 | 161 | 7 | 33 | 294 | 26 | 284 | 9.02e-47 | 160 |
| MS.gene061003.t1 | AT1G65310 | 38.281 | 256 | 144 | 7 | 41 | 292 | 37 | 282 | 5.46e-46 | 157 |
| MS.gene061003.t1 | AT2G14620 | 37.131 | 237 | 134 | 8 | 64 | 293 | 18 | 246 | 6.08e-46 | 156 |
| MS.gene061003.t1 | AT1G65310 | 38.281 | 256 | 144 | 7 | 41 | 292 | 59 | 304 | 9.15e-46 | 157 |
| MS.gene061003.t1 | AT2G14620 | 37.281 | 228 | 128 | 8 | 73 | 293 | 16 | 235 | 4.96e-44 | 151 |
| MS.gene061003.t1 | AT4G25820 | 34.091 | 264 | 165 | 5 | 33 | 293 | 30 | 287 | 6.01e-42 | 147 |
| MS.gene061003.t1 | AT3G48580 | 32.319 | 263 | 155 | 11 | 31 | 291 | 32 | 273 | 1.17e-35 | 130 |
| MS.gene061003.t1 | AT2G36870 | 39.773 | 176 | 90 | 4 | 6 | 167 | 5 | 178 | 2.57e-32 | 119 |
| MS.gene061003.t1 | AT3G48580 | 32.900 | 231 | 133 | 10 | 63 | 291 | 4 | 214 | 1.74e-31 | 118 |
| MS.gene061003.t1 | AT3G48580 | 29.278 | 263 | 143 | 12 | 31 | 291 | 32 | 253 | 1.66e-22 | 95.1 |
Find 0 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAAATATTAAAAA+TGG | - | 10364:3536-3555 | None:intergenic | 0.0% |
| !! | AACTAAATATAGCATATTAA+GGG | - | 10364:4182-4201 | None:intergenic | 15.0% |
| !! | ATGTATATATATATCCTTAA+AGG | + | 10364:4464-4483 | MS.gene061003:intron | 15.0% |
| !! | TAAAATACAACTAAAAAACA+CGG | - | 10364:4803-4822 | None:intergenic | 15.0% |
| !! | TAACTAAATATAGCATATTA+AGG | - | 10364:4183-4202 | None:intergenic | 15.0% |
| !! | TGTATATATATATCCTTAAA+GGG | + | 10364:4465-4484 | MS.gene061003:intron | 15.0% |
| !! | TTATATAAAATTTGAGAGAT+AGG | + | 10364:4930-4949 | MS.gene061003:intron | 15.0% |
| !!! | ATCTCTCAAATTTTATATAA+AGG | - | 10364:4930-4949 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCTTCCATTTTTT+AGG | - | 10364:3898-3917 | None:intergenic | 15.0% |
| !! | ACATAATTCACTATAACATT+TGG | - | 10364:3276-3295 | None:intergenic | 20.0% |
| !! | ATAATCAGAAGGTAATTTAA+TGG | - | 10364:3137-3156 | None:intergenic | 20.0% |
| !! | GATTGCTAATTCATAAATTT+AGG | - | 10364:4595-4614 | None:intergenic | 20.0% |
| !! | GATTTAATGATTGAAAAACA+CGG | + | 10364:4828-4847 | MS.gene061003:intron | 20.0% |
| !! | TAGTCTATAAAACACTAATA+TGG | + | 10364:3357-3376 | MS.gene061003:intron | 20.0% |
| !!! | AAATAGACTTTGAATTTTTG+GGG | + | 10364:3986-4005 | MS.gene061003:CDS | 20.0% |
| !!! | ATGTTAATGGTTAATTTGTT+AGG | - | 10364:4723-4742 | None:intergenic | 20.0% |
| !!! | CACTAATTTTACCTAAAAAA+TGG | + | 10364:3884-3903 | MS.gene061003:intron | 20.0% |
| !!! | GAAATAGACTTTGAATTTTT+GGG | + | 10364:3985-4004 | MS.gene061003:CDS | 20.0% |
| !!! | GTGTTTTTCAATCATTAAAT+CGG | - | 10364:4829-4848 | None:intergenic | 20.0% |
| !!! | TGAAATAGACTTTGAATTTT+TGG | + | 10364:3984-4003 | MS.gene061003:CDS | 20.0% |
| ! | AGGATTCAAACAAATGTTTA+TGG | + | 10364:4030-4049 | MS.gene061003:CDS | 25.0% |
| ! | ATATATATATCCTTAAAGGG+AGG | + | 10364:4468-4487 | MS.gene061003:intron | 25.0% |
| ! | ATTCAAAGTCTATTTCATCA+TGG | - | 10364:3981-4000 | None:intergenic | 25.0% |
| ! | CAAACAAATGTTTATGGAAA+TGG | + | 10364:4036-4055 | MS.gene061003:CDS | 25.0% |
| ! | GATGTTAATAATGAGGTTTA+GGG | + | 10364:4691-4710 | MS.gene061003:intron | 25.0% |
| ! | GGTATAATAGGAAAATTTCT+TGG | - | 10364:2875-2894 | None:intergenic | 25.0% |
| ! | TAGATCATTAGTATATGATG+AGG | - | 10364:3197-3216 | None:intergenic | 25.0% |
| ! | TTAGAAATTCAACGTAATCA+TGG | - | 10364:3801-3820 | None:intergenic | 25.0% |
| ! | TTATAAAGATTCCAATACCT+AGG | - | 10364:4541-4560 | None:intergenic | 25.0% |
| ! | TTCATCAGTATAGTATTCTT+TGG | + | 10364:4118-4137 | MS.gene061003:CDS | 25.0% |
| !! | ACAAGTTGAAAGAATCAAAA+TGG | + | 10364:5342-5361 | MS.gene061003:CDS | 25.0% |
| !! | ATGTACAATTTTTGCATTGA+TGG | + | 10364:4388-4407 | MS.gene061003:intron | 25.0% |
| !! | CTATTATACCTTTTGATGAA+GGG | + | 10364:2885-2904 | MS.gene061003:CDS | 25.0% |
| !! | CTTTAGAAAATGATTTGAAC+CGG | + | 10364:3410-3429 | MS.gene061003:intron | 25.0% |
| !! | TATAAAGTTCTGATGACATA+TGG | - | 10364:4435-4454 | None:intergenic | 25.0% |
| !! | TTAGTCTTTATGATCAGTAA+AGG | + | 10364:3600-3619 | MS.gene061003:intron | 25.0% |
| !! | TTCGACTAATTTTCATCTAA+TGG | - | 10364:4780-4799 | None:intergenic | 25.0% |
| !!! | AAAACGAAGTAACTTTGTTT+TGG | - | 10364:5534-5553 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGAAACTGTCATT+TGG | + | 10364:3699-3718 | MS.gene061003:intron | 25.0% |
| AAATTTGATCCCGTTACATT+TGG | + | 10364:5475-5494 | MS.gene061003:CDS | 30.0% | |
| AACCCACAAGATAAAAAAGT+TGG | + | 10364:4491-4510 | MS.gene061003:intron | 30.0% | |
| ACCATTAACATTTGCGTATA+AGG | + | 10364:4732-4751 | MS.gene061003:intron | 30.0% | |
| ATACCTAGGAATTTATCCAA+TGG | - | 10364:4527-4546 | None:intergenic | 30.0% | |
| ATGAACGGATGTTAATAATG+AGG | + | 10364:4684-4703 | MS.gene061003:intron | 30.0% | |
| ATTGGAAGAGAAGAAAGATA+TGG | + | 10364:4069-4088 | MS.gene061003:CDS | 30.0% | |
| CAGAATGAATGATCAAGTTA+TGG | - | 10364:2931-2950 | None:intergenic | 30.0% | |
| GAATCAAAATGGAGAACTTT+AGG | + | 10364:5353-5372 | MS.gene061003:CDS | 30.0% | |
| GACTTTGTATTCTACCATAT+GGG | + | 10364:5147-5166 | MS.gene061003:CDS | 30.0% | |
| GAGAAGAAAGATATGGTTTA+TGG | + | 10364:4076-4095 | MS.gene061003:CDS | 30.0% | |
| GGATGTTAATAATGAGGTTT+AGG | + | 10364:4690-4709 | MS.gene061003:intron | 30.0% | |
| GGTAAAATTAGTGCAATTGA+TGG | - | 10364:3877-3896 | None:intergenic | 30.0% | |
| TCAGAGAATTCTGCAATATA+GGG | - | 10364:5229-5248 | None:intergenic | 30.0% | |
| TCCTTATACGCAAATGTTAA+TGG | - | 10364:4736-4755 | None:intergenic | 30.0% | |
| TGACTTTGTATTCTACCATA+TGG | + | 10364:5146-5165 | MS.gene061003:CDS | 30.0% | |
| TTGGATAAATTCCTAGGTAT+TGG | + | 10364:4527-4546 | MS.gene061003:intron | 30.0% | |
| TTTATTCTGCAGATGTCAAA+TGG | + | 10364:3937-3956 | MS.gene061003:intron | 30.0% | |
| ! | AATATCAAACAGACTTTTGC+TGG | - | 10364:3680-3699 | None:intergenic | 30.0% |
| ! | CCTATTATACCTTTTGATGA+AGG | + | 10364:2884-2903 | MS.gene061003:CDS | 30.0% |
| ! | CCTTCATCAAAAGGTATAAT+AGG | - | 10364:2887-2906 | None:intergenic | 30.0% |
| ! | CGGTTCAAATCATTTTCTAA+AGG | - | 10364:3412-3431 | None:intergenic | 30.0% |
| ! | TACTTTGTATTTTCCTCCAT+TGG | - | 10364:5191-5210 | None:intergenic | 30.0% |
| ! | TGAACAAAAAGTACAAGCAA+GGG | - | 10364:4282-4301 | None:intergenic | 30.0% |
| ! | TTGAACAAAAAGTACAAGCA+AGG | - | 10364:4283-4302 | None:intergenic | 30.0% |
| !! | CAAATCATTTTCTAAAGGTG+TGG | - | 10364:3407-3426 | None:intergenic | 30.0% |
| !! | CAGTTGCAAATTTTAACCAT+TGG | - | 10364:4870-4889 | None:intergenic | 30.0% |
| !! | TTGTGTTTTGTTCTGTTTTC+AGG | + | 10364:3061-3080 | MS.gene061003:intron | 30.0% |
| !!! | AACTGGTTTTTGCTTTTAGT+AGG | + | 10364:4356-4375 | MS.gene061003:intron | 30.0% |
| !!! | CACCAACTTTTTTATCTTGT+GGG | - | 10364:4496-4515 | None:intergenic | 30.0% |
| AAAGACGTATGAAACCTACT+TGG | - | 10364:4637-4656 | None:intergenic | 35.0% | |
| AAAGATTGACAAAATCGCGA+TGG | + | 10364:3841-3860 | MS.gene061003:intron | 35.0% | |
| AAATCTGTGGATGTGGTAAA+TGG | - | 10364:4331-4350 | None:intergenic | 35.0% | |
| AAGCACTAAAATAGCCATGA+AGG | - | 10364:3114-3133 | None:intergenic | 35.0% | |
| AAGTAAGAGATGAACAGCTT+TGG | - | 10364:2957-2976 | None:intergenic | 35.0% | |
| AAGTTATGGTCTCCAAACAA+AGG | - | 10364:2917-2936 | None:intergenic | 35.0% | |
| ACCATTGGATGAAGATAAGA+CGG | - | 10364:4855-4874 | None:intergenic | 35.0% | |
| ATCCACAGATTTGTGAAAAC+TGG | + | 10364:4339-4358 | MS.gene061003:intron | 35.0% | |
| ATTCCAGCAGTATAATCAGA+AGG | - | 10364:3148-3167 | None:intergenic | 35.0% | |
| CCACAAGATAAAAAAGTTGG+TGG | + | 10364:4494-4513 | MS.gene061003:intron | 35.0% | |
| GTCAGAGAATTCTGCAATAT+AGG | - | 10364:5230-5249 | None:intergenic | 35.0% | |
| GTTCTCTTTACTTCTCTGAT+AGG | - | 10364:5091-5110 | None:intergenic | 35.0% | |
| TACAAAGTCATTGCCTTTGA+TGG | - | 10364:5136-5155 | None:intergenic | 35.0% | |
| TACTGATGAAATTCCTCAGA+AGG | - | 10364:4108-4127 | None:intergenic | 35.0% | |
| TATCAAACACATACACTCCT+CGG | + | 10364:3222-3241 | MS.gene061003:intron | 35.0% | |
| TCAACTTGTGAAACATCAGA+GGG | - | 10364:5331-5350 | None:intergenic | 35.0% | |
| TCTCATGATCTTTACCTTCA+TGG | + | 10364:3097-3116 | MS.gene061003:CDS | 35.0% | |
| TGACCATTGGATAAATTCCT+AGG | + | 10364:4521-4540 | MS.gene061003:intron | 35.0% | |
| TGATTATACTGCTGGAATTG+TGG | + | 10364:3150-3169 | MS.gene061003:CDS | 35.0% | |
| TTACCTTCTGATTATACTGC+TGG | + | 10364:3142-3161 | MS.gene061003:CDS | 35.0% | |
| TTCAACTTGTGAAACATCAG+AGG | - | 10364:5332-5351 | None:intergenic | 35.0% | |
| TTGTTCCTTAGTTACCAAGT+AGG | + | 10364:4620-4639 | MS.gene061003:intron | 35.0% | |
| TTTATGGTTTGATCCTTCTG+AGG | + | 10364:4092-4111 | MS.gene061003:CDS | 35.0% | |
| ! | AAAAAGTACAAGCAAGGGAA+TGG | - | 10364:4277-4296 | None:intergenic | 35.0% |
| ! | AACCAGTTTTCACAAATCTG+TGG | - | 10364:4344-4363 | None:intergenic | 35.0% |
| ! | ACAGACTTTTGCTGGAAAAA+AGG | - | 10364:3672-3691 | None:intergenic | 35.0% |
| ! | CAGACTTTTGCTGGAAAAAA+GGG | - | 10364:3671-3690 | None:intergenic | 35.0% |
| ! | GGAAATGGAAGTACAAACAT+TGG | + | 10364:4051-4070 | MS.gene061003:CDS | 35.0% |
| ! | TGAAACCTACTTGGTAACTA+AGG | - | 10364:4628-4647 | None:intergenic | 35.0% |
| ! | TTTTCACAAATCTGTGGATG+TGG | - | 10364:4338-4357 | None:intergenic | 35.0% |
| !! | GAATTTTTGGGGAACATAAG+AGG | + | 10364:3997-4016 | MS.gene061003:CDS | 35.0% |
| !!! | ACGAAGTAACTTTGTTTTGG+CGG | - | 10364:5531-5550 | None:intergenic | 35.0% |
| !!! | CCACCAACTTTTTTATCTTG+TGG | - | 10364:4497-4516 | None:intergenic | 35.0% |
| AAATGATTTGAACCGGTCGT+TGG | + | 10364:3417-3436 | MS.gene061003:intron | 40.0% | |
| AAGAGAACTGAGTCAATGAG+AGG | + | 10364:5103-5122 | MS.gene061003:CDS | 40.0% | |
| ACATAAGAGGCAAAGATTGG+AGG | + | 10364:4010-4029 | MS.gene061003:CDS | 40.0% | |
| ACCGTCTTATCTTCATCCAA+TGG | + | 10364:4851-4870 | MS.gene061003:intron | 40.0% | |
| CATATGGGATGCATCTACTT+GGG | + | 10364:5162-5181 | MS.gene061003:CDS | 40.0% | |
| CTCTTACTTGATGAGTCTTC+AGG | + | 10364:2968-2987 | MS.gene061003:CDS | 40.0% | |
| CTTGGTGAAACAGAGTAACA+AGG | - | 10364:2857-2876 | None:intergenic | 40.0% | |
| GATCCCGTTACATTTGGTAA+TGG | + | 10364:5481-5500 | MS.gene061003:CDS | 40.0% | |
| GCGAGTTTGACAAAATCACA+CGG | + | 10364:3772-3791 | MS.gene061003:intron | 40.0% | |
| GGAACATAAGAGGCAAAGAT+TGG | + | 10364:4007-4026 | MS.gene061003:CDS | 40.0% | |
| GGTGTATACCCTTCATCAAA+AGG | - | 10364:2896-2915 | None:intergenic | 40.0% | |
| GTAAGAGTTGAGACGATGAA+CGG | + | 10364:4669-4688 | MS.gene061003:intron | 40.0% | |
| TAGACTATGAAACAGAGCCA+TGG | - | 10364:3344-3363 | None:intergenic | 40.0% | |
| TTCTCTGACTTTGTCCTACA+TGG | + | 10364:5241-5260 | MS.gene061003:CDS | 40.0% | |
| ! | GAAGGGTATACACCTTTGTT+TGG | + | 10364:2902-2921 | MS.gene061003:CDS | 40.0% |
| ! | GAGAGGAGATTTTCCATCAA+AGG | + | 10364:5120-5139 | MS.gene061003:CDS | 40.0% |
| ! | GTGTGATTTTGTCAAACTCG+CGG | - | 10364:3773-3792 | None:intergenic | 40.0% |
| !! | TTTGTTCTGTTTTCAGGCTC+TGG | + | 10364:3067-3086 | MS.gene061003:intron | 40.0% |
| ACACATACACTCCTCGGATT+AGG | + | 10364:3228-3247 | MS.gene061003:intron | 45.0% | |
| ATCGTCTCAACTCTTACGAC+AGG | - | 10364:4666-4685 | None:intergenic | 45.0% | |
| CACTTGGTCACATGCTCAAT+AGG | - | 10364:5280-5299 | None:intergenic | 45.0% | |
| CAGATACAAAGTCCCTCTAC+CGG | + | 10364:5414-5433 | MS.gene061003:CDS | 45.0% | |
| CCAAGTAGATGCATCCCATA+TGG | - | 10364:5164-5183 | None:intergenic | 45.0% | |
| CCATATGGGATGCATCTACT+TGG | + | 10364:5161-5180 | MS.gene061003:CDS | 45.0% | |
| CCGGCCATTACCAAATGTAA+CGG | - | 10364:5488-5507 | None:intergenic | 45.0% | |
| CGGCCATTACCAAATGTAAC+GGG | - | 10364:5487-5506 | None:intergenic | 45.0% | |
| GATCAACTGCACAACCATGT+AGG | - | 10364:5258-5277 | None:intergenic | 45.0% | |
| TCAACTCTTACGACAGGGTT+CGG | - | 10364:4660-4679 | None:intergenic | 45.0% | |
| TCGTCTCAACTCTTACGACA+GGG | - | 10364:4665-4684 | None:intergenic | 45.0% | |
| ! | ACTTTGAGCACTGTCACACT+TGG | - | 10364:5296-5315 | None:intergenic | 45.0% |
| !! | CCGTTACATTTGGTAATGGC+CGG | + | 10364:5485-5504 | MS.gene061003:CDS | 45.0% |
| !! | TAGTGCAATTGATGGCGCAT+TGG | - | 10364:3869-3888 | None:intergenic | 45.0% |
| !!! | GGACTAGTCAGTGTCGTTTT+TGG | - | 10364:3386-3405 | None:intergenic | 45.0% |
| CTTGTGGGTTCCTCCCTTTA+AGG | - | 10364:4481-4500 | None:intergenic | 50.0% | |
| GCATCTACTTGGGCTACCAA+TGG | + | 10364:5172-5191 | MS.gene061003:CDS | 50.0% | |
| TCTACTTGGGCTACCAATGG+AGG | + | 10364:5175-5194 | MS.gene061003:CDS | 50.0% | |
| TGTCAGACACACCTAATCCG+AGG | - | 10364:3242-3261 | None:intergenic | 50.0% | |
| TTTGGCGGTGTCTCTTTCCA+CGG | - | 10364:5516-5535 | None:intergenic | 50.0% | |
| ! | TCGATTCGCGACAAGCTGAA+AGG | + | 10364:5446-5465 | MS.gene061003:CDS | 50.0% |
| !! | AGTTGGTGGCATGTGACCAT+TGG | + | 10364:4508-4527 | MS.gene061003:intron | 50.0% |
| CAGCGACACCTCTGATCAAG+AGG | - | 10364:3464-3483 | None:intergenic | 55.0% | |
| CGACACCTCTGATCAAGAGG+TGG | - | 10364:3461-3480 | None:intergenic | 55.0% | |
| CGATCACACACTCCGGTAGA+GGG | - | 10364:5429-5448 | None:intergenic | 55.0% | |
| CGCGAATCGATCACACACTC+CGG | - | 10364:5436-5455 | None:intergenic | 55.0% | |
| GTCAGCCACCTCTTGATCAG+AGG | + | 10364:3453-3472 | MS.gene061003:intron | 55.0% | |
| TCCAACACGACACCAACGAC+CGG | - | 10364:3432-3451 | None:intergenic | 55.0% | |
| TCGATCACACACTCCGGTAG+AGG | - | 10364:5430-5449 | None:intergenic | 55.0% | |
| !! | AGGTGTCGCTGCTACAAAGC+TGG | + | 10364:3473-3492 | MS.gene061003:intron | 55.0% |
| !! | CAGTGTTGACGTGTCGTGTC+TGG | + | 10364:3315-3334 | MS.gene061003:intron | 55.0% |
| CGTGTCGTGTCTGGTGTCCA+TGG | + | 10364:3324-3343 | MS.gene061003:intron | 60.0% | |
| GTCTCTTTCCACGGTGGTGC+CGG | - | 10364:5507-5526 | None:intergenic | 60.0% | |
| !! | ACCGGTCGTTGGTGTCGTGT+TGG | + | 10364:3428-3447 | MS.gene061003:intron | 60.0% |
| GGCGGTGTCTCTTTCCACGG+TGG | - | 10364:5513-5532 | None:intergenic | 65.0% | |
| ! | GGTAATGGCCGGCACCACCG+TGG | + | 10364:5496-5515 | MS.gene061003:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10364 | gene | 2800 | 5555 | 2800 | ID=MS.gene061003 |
| 10364 | mRNA | 2800 | 5555 | 2800 | ID=MS.gene061003.t1;Parent=MS.gene061003 |
| 10364 | exon | 2800 | 2989 | 2800 | ID=MS.gene061003.t1.exon1;Parent=MS.gene061003.t1 |
| 10364 | CDS | 2800 | 2989 | 2800 | ID=cds.MS.gene061003.t1;Parent=MS.gene061003.t1 |
| 10364 | exon | 3083 | 3183 | 3083 | ID=MS.gene061003.t1.exon2;Parent=MS.gene061003.t1 |
| 10364 | CDS | 3083 | 3183 | 3083 | ID=cds.MS.gene061003.t1;Parent=MS.gene061003.t1 |
| 10364 | exon | 3949 | 4157 | 3949 | ID=MS.gene061003.t1.exon3;Parent=MS.gene061003.t1 |
| 10364 | CDS | 3949 | 4157 | 3949 | ID=cds.MS.gene061003.t1;Parent=MS.gene061003.t1 |
| 10364 | exon | 5069 | 5555 | 5069 | ID=MS.gene061003.t1.exon4;Parent=MS.gene061003.t1 |
| 10364 | CDS | 5069 | 5555 | 5069 | ID=cds.MS.gene061003.t1;Parent=MS.gene061003.t1 |
| Gene Sequence |
| Protein sequence |
