Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058386.t1 | XP_003628200.1 | 91.6 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 6.60E-80 | 306.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058386.t1 | Q9SSK5 | 36.9 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 5.9e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058386.t1 | G7L7T5 | 91.6 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 4.7e-80 | 306.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058382 | MS.gene058386 | 0.821237 | 4.49E-53 | -1.69E-46 |
| MS.gene058386 | MS.gene061773 | 0.810191 | 1.30E-50 | -1.69E-46 |
| MS.gene058386 | MS.gene061774 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene061775 | 0.811328 | 7.40E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene063501 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene058386 | MS.gene07138 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene058386 | MS.gene071428 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene071612 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene07622 | 0.804387 | 2.21E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene20616 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene27333 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene27942 | 0.841166 | 5.60E-58 | -1.69E-46 |
| MS.gene058386 | MS.gene27943 | 0.828189 | 1.03E-54 | -1.69E-46 |
| MS.gene058386 | MS.gene32854 | 0.812386 | 4.35E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene37467 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene058386 | MS.gene44073 | 0.801939 | 7.11E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene47901 | 0.84075 | 7.20E-58 | -1.69E-46 |
| MS.gene058386 | MS.gene47902 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene058386 | MS.gene49744 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene058386 | MS.gene51365 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene56419 | 0.804077 | 2.57E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene57117 | 0.811414 | 7.08E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene57289 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene59297 | 0.811102 | 8.28E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene59487 | 0.804592 | 2.01E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene59847 | 0.876292 | 1.57E-68 | -1.69E-46 |
| MS.gene058386 | MS.gene59849 | 0.824295 | 8.72E-54 | -1.69E-46 |
| MS.gene058386 | MS.gene62836 | -0.801708 | 7.93E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene64442 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene67221 | 0.811008 | 8.68E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene67222 | 0.842339 | 2.75E-58 | -1.69E-46 |
| MS.gene058386 | MS.gene70141 | 0.819483 | 1.13E-52 | -1.69E-46 |
| MS.gene058386 | MS.gene72118 | -0.817068 | 4.00E-52 | -1.69E-46 |
| MS.gene058386 | MS.gene74343 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene74352 | 0.832724 | 8.03E-56 | -1.69E-46 |
| MS.gene058386 | MS.gene74355 | 0.998097 | 4.47E-256 | -1.69E-46 |
| MS.gene058386 | MS.gene74366 | 0.846016 | 2.83E-59 | -1.69E-46 |
| MS.gene058386 | MS.gene77771 | 0.85982 | 3.18E-63 | -1.69E-46 |
| MS.gene058386 | MS.gene77774 | 0.810951 | 8.93E-51 | -1.69E-46 |
| MS.gene058386 | MS.gene78065 | 0.806323 | 8.70E-50 | -1.69E-46 |
| MS.gene058386 | MS.gene87144 | 0.803608 | 3.21E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058386.t1 | MTR_8g045490 | 91.613 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 9.20e-104 | 293 |
| MS.gene058386.t1 | MTR_8g045520 | 83.444 | 151 | 25 | 0 | 1 | 151 | 1 | 151 | 1.73e-91 | 263 |
| MS.gene058386.t1 | MTR_8g045400 | 78.846 | 156 | 31 | 2 | 1 | 155 | 1 | 155 | 2.27e-88 | 254 |
| MS.gene058386.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 2.67e-85 | 247 |
| MS.gene058386.t1 | MTR_8g045695 | 75.658 | 152 | 36 | 1 | 1 | 152 | 1 | 151 | 1.76e-83 | 242 |
| MS.gene058386.t1 | MTR_8g045555 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 9.21e-82 | 238 |
| MS.gene058386.t1 | MTR_8g045300 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 6.95e-81 | 236 |
| MS.gene058386.t1 | MTR_8g045735 | 70.395 | 152 | 44 | 1 | 1 | 152 | 1 | 151 | 3.55e-78 | 229 |
| MS.gene058386.t1 | MTR_8g045665 | 71.053 | 152 | 43 | 1 | 1 | 152 | 1 | 151 | 6.41e-77 | 226 |
| MS.gene058386.t1 | MTR_8g045640 | 69.872 | 156 | 45 | 2 | 1 | 155 | 1 | 155 | 1.94e-76 | 224 |
| MS.gene058386.t1 | MTR_8g045560 | 69.079 | 152 | 46 | 1 | 1 | 152 | 1 | 151 | 1.81e-74 | 219 |
| MS.gene058386.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 1.26e-39 | 131 |
| MS.gene058386.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 3.51e-39 | 130 |
| MS.gene058386.t1 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 1 | 149 | 1 | 155 | 8.49e-28 | 101 |
| MS.gene058386.t1 | MTR_8g012550 | 33.562 | 146 | 94 | 3 | 6 | 150 | 8 | 151 | 1.86e-25 | 95.5 |
| MS.gene058386.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 3.76e-24 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058386.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.75e-25 | 95.5 |
| MS.gene058386.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.75e-25 | 95.5 |
| MS.gene058386.t1 | AT1G70890 | 36.913 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 7.18e-25 | 94.0 |
| MS.gene058386.t1 | AT1G70840 | 32.886 | 149 | 97 | 3 | 3 | 149 | 20 | 167 | 1.32e-22 | 88.6 |
| MS.gene058386.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 4.28e-22 | 87.4 |
| MS.gene058386.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 9.13e-22 | 87.0 |
| MS.gene058386.t1 | AT1G23120 | 30.872 | 149 | 98 | 3 | 1 | 149 | 1 | 144 | 1.00e-21 | 85.5 |
| MS.gene058386.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 2.62e-21 | 87.0 |
| MS.gene058386.t1 | AT5G28000 | 32.886 | 149 | 97 | 3 | 3 | 149 | 13 | 160 | 3.43e-21 | 84.7 |
| MS.gene058386.t1 | AT1G23120 | 31.469 | 143 | 93 | 3 | 7 | 149 | 57 | 194 | 4.41e-21 | 85.1 |
| MS.gene058386.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 6.99e-21 | 87.4 |
| MS.gene058386.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 184 | 331 | 2.47e-19 | 83.2 |
| MS.gene058386.t1 | AT1G70870 | 35.762 | 151 | 84 | 4 | 1 | 151 | 1 | 138 | 8.81e-21 | 82.8 |
| MS.gene058386.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 137 | 284 | 9.56e-20 | 83.6 |
| MS.gene058386.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 1.21e-19 | 82.4 |
| MS.gene058386.t1 | AT4G23670 | 34.641 | 153 | 97 | 3 | 1 | 152 | 1 | 151 | 2.78e-19 | 79.3 |
| MS.gene058386.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.81e-19 | 82.8 |
| MS.gene058386.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 8.54e-18 | 78.6 |
| MS.gene058386.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.81e-19 | 82.8 |
| MS.gene058386.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 8.54e-18 | 78.6 |
| MS.gene058386.t1 | AT1G70880 | 30.201 | 149 | 101 | 3 | 3 | 149 | 8 | 155 | 2.44e-18 | 77.0 |
| MS.gene058386.t1 | AT1G23130 | 29.054 | 148 | 103 | 2 | 3 | 149 | 10 | 156 | 5.74e-18 | 76.3 |
| MS.gene058386.t1 | AT2G01520 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 1.83e-16 | 72.0 |
| MS.gene058386.t1 | AT4G23680 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 2.39e-16 | 71.6 |
| MS.gene058386.t1 | AT1G35260 | 28.276 | 145 | 100 | 3 | 7 | 149 | 6 | 148 | 3.71e-16 | 71.2 |
| MS.gene058386.t1 | AT1G14930 | 31.677 | 161 | 93 | 5 | 1 | 153 | 1 | 152 | 5.68e-16 | 70.9 |
| MS.gene058386.t1 | AT4G14060 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.82e-15 | 68.9 |
| MS.gene058386.t1 | AT2G01530 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.56e-15 | 68.9 |
| MS.gene058386.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 3.58e-14 | 66.2 |
| MS.gene058386.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 3.58e-14 | 66.2 |
| MS.gene058386.t1 | AT1G35310 | 26.087 | 138 | 99 | 3 | 13 | 149 | 12 | 147 | 1.06e-13 | 64.7 |
| MS.gene058386.t1 | AT1G30990 | 30.667 | 150 | 100 | 4 | 1 | 149 | 1 | 147 | 3.32e-13 | 63.5 |
| MS.gene058386.t1 | AT1G14940 | 29.333 | 150 | 103 | 3 | 1 | 149 | 1 | 148 | 2.52e-12 | 61.2 |
| MS.gene058386.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.02e-11 | 59.7 |
| MS.gene058386.t1 | AT3G26460 | 30.769 | 156 | 100 | 6 | 1 | 152 | 1 | 152 | 1.88e-11 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 3.2:-2751133 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 3.2:+2752976 | MS.gene058386:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 3.2:-2752953 | None:intergenic |
| TTATTGAGCTATGTTTGCTT+TGG | 0.404556 | 3.2:-2753096 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 3.2:+2752950 | MS.gene058386:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 3.2:-2753038 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 3.2:+2752894 | MS.gene058386:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 3.2:+2751136 | MS.gene058386:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 3.2:+2752951 | MS.gene058386:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.490184 | 3.2:+2751177 | MS.gene058386:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 3.2:+2752917 | MS.gene058386:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 3.2:-2753035 | None:intergenic |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 3.2:+2753041 | MS.gene058386:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 3.2:+2753031 | MS.gene058386:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 3.2:+2753023 | MS.gene058386:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 3.2:+2752957 | MS.gene058386:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 3.2:-2751110 | None:intergenic |
| GGTAAGCTTAGTACTGAAGT+TGG | 0.593684 | 3.2:+2751024 | MS.gene058386:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 3.2:+2751126 | MS.gene058386:CDS |
| ACACTGATTCAGTTAAACAC+TGG | 0.620261 | 3.2:+2751163 | MS.gene058386:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 3.2:+2752821 | MS.gene058386:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 3.2:-2751057 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 3.2:-2753034 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.658576 | 3.2:+2753004 | MS.gene058386:CDS |
| TTCAAAGAAATGGTGCTCTG+CGG | 0.661449 | 3.2:+2751003 | None:intergenic |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 3.2:-2751058 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAATCAG+GGG | - | chr3.2:2751595-2751614 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAAAAAAATC+AGG | - | chr3.2:2751597-2751616 | None:intergenic | 10.0% |
| !! | AGGAATAATAAATATTTATA+AGG | - | chr3.2:2752662-2752681 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAAAAAATCA+GGG | - | chr3.2:2751596-2751615 | None:intergenic | 10.0% |
| !! | TTCTATACAAAAATATTTAT+TGG | + | chr3.2:2752687-2752706 | MS.gene058386:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr3.2:2752727-2752746 | MS.gene058386:intron | 10.0% |
| !!! | GTTGATTTTTTTTTTTTTTT+AGG | - | chr3.2:2752153-2752172 | None:intergenic | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr3.2:2752728-2752747 | MS.gene058386:intron | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | - | chr3.2:2752336-2752355 | None:intergenic | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | - | chr3.2:2752682-2752701 | None:intergenic | 10.0% |
| !!! | TTTTCTATATATATTAGATT+AGG | - | chr3.2:2752031-2752050 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAACAATCATT+TGG | + | chr3.2:2752160-2752179 | MS.gene058386:intron | 15.0% |
| !! | AAAAAAATCAACAATCATTT+GGG | + | chr3.2:2752161-2752180 | MS.gene058386:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr3.2:2752360-2752379 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3.2:2752359-2752378 | MS.gene058386:intron | 15.0% |
| !! | AGATATCATAATTGTTAAAA+TGG | + | chr3.2:2751789-2751808 | MS.gene058386:intron | 15.0% |
| !! | CTAATATATATAGAAAAGTT+GGG | + | chr3.2:2752034-2752053 | MS.gene058386:intron | 15.0% |
| !! | TAAAAATATAACAGAAATAG+AGG | + | chr3.2:2751896-2751915 | MS.gene058386:intron | 15.0% |
| !! | TAATATATATAGAAAAGTTG+GGG | + | chr3.2:2752035-2752054 | MS.gene058386:intron | 15.0% |
| !! | TCTAATATATATAGAAAAGT+TGG | + | chr3.2:2752033-2752052 | MS.gene058386:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3.2:2752350-2752369 | MS.gene058386:intron | 20.0% |
| !! | AATATATATAGAAAAGTTGG+GGG | + | chr3.2:2752036-2752055 | MS.gene058386:intron | 20.0% |
| !! | AATCAAATAAGATGATGATT+TGG | - | chr3.2:2751239-2751258 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3.2:2752273-2752292 | None:intergenic | 20.0% |
| !! | AGATTATAAGATCTCAAAAA+AGG | + | chr3.2:2752520-2752539 | MS.gene058386:intron | 20.0% |
| !! | ATATATAGTTCATACAATTC+TGG | - | chr3.2:2751754-2751773 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr3.2:2752891-2752910 | MS.gene058386:CDS | 25.0% |
| ! | AATATAACAGAAATAGAGGA+TGG | + | chr3.2:2751900-2751919 | MS.gene058386:intron | 25.0% |
| ! | ATAAGAAAGAAACAAGTACA+TGG | + | chr3.2:2751374-2751393 | MS.gene058386:intron | 25.0% |
| ! | ATATATATAGAAAAGTTGGG+GGG | + | chr3.2:2752037-2752056 | MS.gene058386:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr3.2:2752951-2752970 | MS.gene058386:CDS | 25.0% |
| ! | CTATATATTAAACTGTGTGA+AGG | + | chr3.2:2751766-2751785 | MS.gene058386:intron | 25.0% |
| ! | TCATAATTGTTAAAATGGTC+CGG | + | chr3.2:2751794-2751813 | MS.gene058386:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr3.2:2753004-2753023 | MS.gene058386:CDS | 25.0% |
| !! | TTAAAATGGAACTTTAAGAG+AGG | - | chr3.2:2752192-2752211 | None:intergenic | 25.0% |
| !!! | ATGATTGTTGATTTGTCATT+AGG | - | chr3.2:2752123-2752142 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTCTTACTT+AGG | - | chr3.2:2751968-2751987 | None:intergenic | 25.0% |
| AACCACAGCTATTCTTTATA+TGG | - | chr3.2:2752637-2752656 | None:intergenic | 30.0% | |
| AACCATATAAAGAATAGCTG+TGG | + | chr3.2:2752632-2752651 | MS.gene058386:intron | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | + | chr3.2:2752917-2752936 | MS.gene058386:CDS | 30.0% | |
| ATTTGTCATTAGGTTCTATG+GGG | - | chr3.2:2752113-2752132 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr3.2:2752950-2752969 | MS.gene058386:CDS | 30.0% | |
| CGGGAAATATAATCATTCAT+AGG | + | chr3.2:2751686-2751705 | MS.gene058386:intron | 30.0% | |
| GATTTGTCATTAGGTTCTAT+GGG | - | chr3.2:2752114-2752133 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | chr3.2:2751113-2751132 | None:intergenic | 30.0% | |
| TCTAGAAGTCCTAATTCAAA+TGG | - | chr3.2:2751505-2751524 | None:intergenic | 30.0% | |
| TTAAGCATCTATCGTCAAAA+TGG | - | chr3.2:2751629-2751648 | None:intergenic | 30.0% | |
| TTATTGAGCTATGTTTGCTT+TGG | - | chr3.2:2753099-2753118 | None:intergenic | 30.0% | |
| ! | CGGATCTTGGAATAATTTTT+GGG | + | chr3.2:2751723-2751742 | MS.gene058386:intron | 30.0% |
| ! | CTATCGTCAAAATGGTTTTT+GGG | - | chr3.2:2751621-2751640 | None:intergenic | 30.0% |
| ! | GGATCTTGGAATAATTTTTG+GGG | + | chr3.2:2751724-2751743 | MS.gene058386:intron | 30.0% |
| ! | TCTATCGTCAAAATGGTTTT+TGG | - | chr3.2:2751622-2751641 | None:intergenic | 30.0% |
| ! | TGATTTGTCATTAGGTTCTA+TGG | - | chr3.2:2752115-2752134 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3.2:2752442-2752461 | MS.gene058386:intron | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+TGG | - | chr3.2:2752206-2752225 | None:intergenic | 30.0% |
| !! | ATCTTGGAATAATTTTTGGG+GGG | + | chr3.2:2751726-2751745 | MS.gene058386:intron | 30.0% |
| !! | GATCTTGGAATAATTTTTGG+GGG | + | chr3.2:2751725-2751744 | MS.gene058386:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3.2:2752441-2752460 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr3.2:2751177-2751196 | MS.gene058386:CDS | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr3.2:2752894-2752913 | MS.gene058386:CDS | 35.0% | |
| AACAGAAATAGAGGATGGAA+GGG | + | chr3.2:2751905-2751924 | MS.gene058386:intron | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr3.2:2751136-2751155 | MS.gene058386:CDS | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | - | chr3.2:2753041-2753060 | None:intergenic | 35.0% | |
| AATCAAGCGAAATAAACCAC+CGG | - | chr3.2:2751816-2751835 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | + | chr3.2:2753041-2753060 | MS.gene058386:CDS | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr3.2:2752821-2752840 | MS.gene058386:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr3.2:2751136-2751155 | None:intergenic | 35.0% | |
| ATTAGGTTCTATGGGGAATA+TGG | - | chr3.2:2752106-2752125 | None:intergenic | 35.0% | |
| CAACATAGTCAAAAGGAGAA+GGG | - | chr3.2:2751664-2751683 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr3.2:2752956-2752975 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr3.2:2751126-2751145 | MS.gene058386:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr3.2:2752816-2752835 | MS.gene058386:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr3.2:2752819-2752838 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr3.2:2752957-2752976 | MS.gene058386:CDS | 35.0% | |
| GTTTATTTCGCTTGATTGCA+GGG | + | chr3.2:2751819-2751838 | MS.gene058386:intron | 35.0% | |
| TAACAGAAATAGAGGATGGA+AGG | + | chr3.2:2751904-2751923 | MS.gene058386:intron | 35.0% | |
| TAATTGTTAAAATGGTCCGG+TGG | + | chr3.2:2751797-2751816 | MS.gene058386:intron | 35.0% | |
| TACATTCGACAAACCAAACA+TGG | + | chr3.2:2751566-2751585 | MS.gene058386:intron | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | - | chr3.2:2751061-2751080 | None:intergenic | 35.0% | |
| TCAACATAGTCAAAAGGAGA+AGG | - | chr3.2:2751665-2751684 | None:intergenic | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr3.2:2752814-2752833 | None:intergenic | 35.0% | |
| ! | GCGGATCTTGGAATAATTTT+TGG | + | chr3.2:2751722-2751741 | MS.gene058386:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr3.2:2752311-2752330 | None:intergenic | 35.0% |
| ! | TCTTTTTCTTACTTAGGTCG+CGG | - | chr3.2:2751937-2751956 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr3.2:2752307-2752326 | None:intergenic | 35.0% |
| ! | TGTTTTTCTTACTTAGGTCG+CGG | - | chr3.2:2751962-2751981 | None:intergenic | 35.0% |
| !! | ACACTGATTCAGTTAAACAC+TGG | + | chr3.2:2751163-2751182 | MS.gene058386:CDS | 35.0% |
| !! | CTCCTTTTGACTATGTTGAA+CGG | + | chr3.2:2751666-2751685 | MS.gene058386:intron | 35.0% |
| !! | TCCTTTTGACTATGTTGAAC+GGG | + | chr3.2:2751667-2751686 | MS.gene058386:intron | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr3.2:2751227-2751246 | None:intergenic | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | - | chr3.2:2751582-2751601 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | - | chr3.2:2751060-2751079 | None:intergenic | 40.0% | |
| AGGACTTCTAGACAATGACA+TGG | + | chr3.2:2751513-2751532 | MS.gene058386:intron | 40.0% | |
| ATTCATAGGCTTCCATACAG+TGG | + | chr3.2:2751700-2751719 | MS.gene058386:intron | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | - | chr3.2:2753037-2753056 | None:intergenic | 40.0% | |
| GGTTTATTTCGCTTGATTGC+AGG | + | chr3.2:2751818-2751837 | MS.gene058386:intron | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr3.2:2752813-2752832 | None:intergenic | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | - | chr3.2:2753038-2753057 | None:intergenic | 40.0% | |
| TCAAATGGCAAATGCCGAAA+TGG | - | chr3.2:2751490-2751509 | None:intergenic | 40.0% | |
| TCCCGTTCAACATAGTCAAA+AGG | - | chr3.2:2751671-2751690 | None:intergenic | 40.0% | |
| ! | CGGCATTTGCCATTTGAATT+AGG | + | chr3.2:2751493-2751512 | MS.gene058386:intron | 40.0% |
| ! | CTTTTTCTTACTTAGGTCGC+GGG | - | chr3.2:2751936-2751955 | None:intergenic | 40.0% |
| ! | GCGGGTTCTTTTTCTTACTT+AGG | - | chr3.2:2751943-2751962 | None:intergenic | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+TGG | + | chr3.2:2751024-2751043 | MS.gene058386:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr3.2:2752308-2752327 | None:intergenic | 40.0% |
| ! | GTTTTTCTTACTTAGGTCGC+GGG | - | chr3.2:2751961-2751980 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.2:2752446-2752465 | MS.gene058386:intron | 40.0% |
| CATAGTCAAAAGGAGAAGGG+TGG | - | chr3.2:2751661-2751680 | None:intergenic | 45.0% | |
| CTATGGGGAATATGGAAGCA+GGG | - | chr3.2:2752098-2752117 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr3.2:2753023-2753042 | MS.gene058386:CDS | 45.0% | |
| TAAACTCACACACAGCTGTG+AGG | + | chr3.2:2751426-2751445 | MS.gene058386:intron | 45.0% | |
| TATGGGGAATATGGAAGCAG+GGG | - | chr3.2:2752097-2752116 | None:intergenic | 45.0% | |
| TCTATGGGGAATATGGAAGC+AGG | - | chr3.2:2752099-2752118 | None:intergenic | 45.0% | |
| TCTTACCACAGCTACTCAGT+TGG | - | chr3.2:2752003-2752022 | None:intergenic | 45.0% | |
| TTGATTGCAGGGTAAGGATG+CGG | + | chr3.2:2751830-2751849 | MS.gene058386:intron | 45.0% | |
| TTTCGCTTGATTGCAGGGTA+AGG | + | chr3.2:2751824-2751843 | MS.gene058386:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.2:2752445-2752464 | MS.gene058386:intron | 45.0% |
| AATGCCGAAATGGCAAAGGC+CGG | - | chr3.2:2751480-2751499 | None:intergenic | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr3.2:2752976-2752995 | MS.gene058386:CDS | 50.0% | |
| CATAGGCTTCCATACAGTGG+CGG | + | chr3.2:2751703-2751722 | MS.gene058386:intron | 50.0% | |
| GGCAAATGCCGAAATGGCAA+AGG | - | chr3.2:2751484-2751503 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr3.2:2753031-2753050 | MS.gene058386:CDS | 50.0% | |
| TGATTGCAGGGTAAGGATGC+GGG | + | chr3.2:2751831-2751850 | MS.gene058386:intron | 50.0% | |
| TTCCAAGATCCGCCACTGTA+TGG | - | chr3.2:2751715-2751734 | None:intergenic | 50.0% | |
| !! | AGAAAAGTTGGGGGGTACCA+TGG | + | chr3.2:2752045-2752064 | MS.gene058386:intron | 50.0% |
| !! | TTCCATACAGTGGCGGATCT+TGG | + | chr3.2:2751710-2751729 | MS.gene058386:intron | 50.0% |
| AAGCAGGGGCGGATCTTCTT+AGG | - | chr3.2:2752083-2752102 | None:intergenic | 55.0% | |
| ACACACAGCTGTGAGGTCTC+GGG | + | chr3.2:2751433-2751452 | MS.gene058386:intron | 55.0% | |
| AGCAGGGGCGGATCTTCTTA+GGG | - | chr3.2:2752082-2752101 | None:intergenic | 55.0% | |
| CACACACAGCTGTGAGGTCT+CGG | + | chr3.2:2751432-2751451 | MS.gene058386:intron | 55.0% | |
| GGATCTTCTTAGGGACCTGC+AGG | - | chr3.2:2752073-2752092 | None:intergenic | 55.0% | |
| ! | ACGTCCGGCCTTTGCCATTT+CGG | + | chr3.2:2751473-2751492 | MS.gene058386:intron | 55.0% |
| AAAGGCCGGACGTCGTGACT+CGG | - | chr3.2:2751466-2751485 | None:intergenic | 60.0% | |
| CAAACCCGAGTCACGACGTC+CGG | + | chr3.2:2751458-2751477 | MS.gene058386:intron | 60.0% | |
| CAGCTACTCAGTTGGCGCAG+TGG | - | chr3.2:2751995-2752014 | None:intergenic | 60.0% | |
| CTGCGCCAACTGAGTAGCTG+TGG | + | chr3.2:2751995-2752014 | MS.gene058386:intron | 60.0% | |
| GCGGGTTCGAATCTCTACGC+AGG | + | chr3.2:2751849-2751868 | MS.gene058386:intron | 60.0% | |
| GGGGAATATGGAAGCAGGGG+CGG | - | chr3.2:2752094-2752113 | None:intergenic | 60.0% | |
| TTAGGGACCTGCAGGTGCCA+TGG | - | chr3.2:2752065-2752084 | None:intergenic | 60.0% | |
| AAGGCCGGACGTCGTGACTC+GGG | - | chr3.2:2751465-2751484 | None:intergenic | 65.0% | |
| !! | GGGGGTACCATGGCACCTGC+AGG | + | chr3.2:2752055-2752074 | MS.gene058386:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2751012 | 2753118 | 2751012 | ID=MS.gene058386 |
| chr3.2 | mRNA | 2751012 | 2753118 | 2751012 | ID=MS.gene058386.t1;Parent=MS.gene058386 |
| chr3.2 | exon | 2751012 | 2751198 | 2751012 | ID=MS.gene058386.t1.exon1;Parent=MS.gene058386.t1 |
| chr3.2 | CDS | 2751012 | 2751198 | 2751012 | ID=cds.MS.gene058386.t1;Parent=MS.gene058386.t1 |
| chr3.2 | exon | 2752835 | 2753118 | 2752835 | ID=MS.gene058386.t1.exon2;Parent=MS.gene058386.t1 |
| chr3.2 | CDS | 2752835 | 2753118 | 2752835 | ID=cds.MS.gene058386.t1;Parent=MS.gene058386.t1 |
| Gene Sequence |
| Protein sequence |
