Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20787.t1 | XP_003591431.1 | 100 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 9.20E-54 | 219.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20787.t1 | Q6NQH4 | 75.8 | 95 | 23 | 0 | 30 | 124 | 30 | 124 | 5.1e-37 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20787.t1 | B7FH99 | 100.0 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 6.7e-54 | 219.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42910 | MS.gene20787 | PPI |
| MS.gene73008 | MS.gene20787 | PPI |
| MS.gene81197 | MS.gene20787 | PPI |
| MS.gene033520 | MS.gene20787 | PPI |
| MS.gene042025 | MS.gene20787 | PPI |
| MS.gene024074 | MS.gene20787 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20787.t1 | MTR_1g087370 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.31e-100 | 282 |
| MS.gene20787.t1 | MTR_1g087370 | 95.876 | 97 | 4 | 0 | 1 | 97 | 1 | 97 | 3.03e-65 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20787.t1 | AT1G02680 | 69.091 | 110 | 30 | 1 | 15 | 124 | 19 | 124 | 1.31e-52 | 162 |
Find 27 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATAAGCGCCACACTTTC+AGG | 0.195120 | 1.2:-65632537 | None:intergenic |
| TCCTGAAAGTGTGGCGCTTA+TGG | 0.280852 | 1.2:+65632536 | MS.gene20787:CDS |
| GTACATAAAGCACAAGATAT+TGG | 0.348377 | 1.2:+65632693 | MS.gene20787:CDS |
| TCTGTACAACGGTTAAGTTT+TGG | 0.401058 | 1.2:-65634259 | None:intergenic |
| GAAAACTCCTCTTCTGCGCT+TGG | 0.409109 | 1.2:-65632289 | None:intergenic |
| TCAACCATTCATCCTTCTGC+TGG | 0.456641 | 1.2:-65634373 | None:intergenic |
| TGTAGAATATATTACAGAAC+TGG | 0.468418 | 1.2:+65632569 | MS.gene20787:CDS |
| CTGCGCTTGGATGAAGTGTC+TGG | 0.471299 | 1.2:-65632276 | None:intergenic |
| ATAGTGCAGCACATGATGTA+TGG | 0.483674 | 1.2:+65632398 | MS.gene20787:intron |
| CAGCACATGATGTATGGCTT+CGG | 0.502212 | 1.2:+65632404 | MS.gene20787:CDS |
| ACTTCATCCAAGCGCAGAAG+AGG | 0.506271 | 1.2:+65632282 | MS.gene20787:CDS |
| AGCGCCACACTTTCAGGAAG+TGG | 0.521650 | 1.2:-65632531 | None:intergenic |
| GTACCTTGCGAATCAAATAG+AGG | 0.544458 | 1.2:-65632749 | None:intergenic |
| ACAATGAGCAATTCTGCTGC+CGG | 0.562228 | 1.2:+65632216 | None:intergenic |
| ACAAGATATTGGATCACAGA+GGG | 0.592434 | 1.2:+65632704 | MS.gene20787:CDS |
| GAGGTGGATGAACCAGCAGA+AGG | 0.597040 | 1.2:+65634361 | MS.gene20787:CDS |
| TTTCCTCTATTTGATTCGCA+AGG | 0.600469 | 1.2:+65632746 | MS.gene20787:CDS |
| AACATGATGAAGAGAATCTG+AGG | 0.603292 | 1.2:+65634329 | MS.gene20787:CDS |
| TGATGAAGAGAATCTGAGGA+AGG | 0.619169 | 1.2:+65634333 | MS.gene20787:CDS |
| CGCTTGGATGAAGTGTCTGG+AGG | 0.624183 | 1.2:-65632273 | None:intergenic |
| CACAAGATATTGGATCACAG+AGG | 0.626166 | 1.2:+65632703 | MS.gene20787:CDS |
| TGAAGTGTCTGGAGGTTGTG+AGG | 0.629236 | 1.2:-65632265 | None:intergenic |
| ATGAAGAGCTAAAACAAGCA+AGG | 0.630743 | 1.2:+65634296 | MS.gene20787:CDS |
| TTAGCCACTTCCTGAAAGTG+TGG | 0.632131 | 1.2:+65632527 | MS.gene20787:intron |
| TAGACAACAGTTCTGTACAA+CGG | 0.672921 | 1.2:-65634270 | None:intergenic |
| AAGATATTGGATCACAGAGG+GGG | 0.677224 | 1.2:+65632706 | MS.gene20787:CDS |
| CAAGATATTGGATCACAGAG+GGG | 0.705641 | 1.2:+65632705 | MS.gene20787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTATTTTTTTGTCA+AGG | + | chr1.2:65632671-65632690 | MS.gene20787:intron | 10.0% |
| !! | AAAAATTATTACATTCTCTT+TGG | - | chr1.2:65632314-65632333 | None:intergenic | 15.0% |
| !! | TATTCATTAACAATGAATAT+GGG | + | chr1.2:65633507-65633526 | MS.gene20787:intron | 15.0% |
| !! | TTATTCATTAACAATGAATA+TGG | + | chr1.2:65633506-65633525 | MS.gene20787:intron | 15.0% |
| !! | AAAATATAAAGATTTGATCG+TGG | - | chr1.2:65634199-65634218 | None:intergenic | 20.0% |
| !! | AAAGTTGCAAATATAAATCT+TGG | + | chr1.2:65632785-65632804 | MS.gene20787:intron | 20.0% |
| !! | AAGTTGCAAATATAAATCTT+GGG | + | chr1.2:65632786-65632805 | MS.gene20787:intron | 20.0% |
| !! | AATAAATAAAAAATCGCGTA+AGG | - | chr1.2:65632662-65632681 | None:intergenic | 20.0% |
| !! | ACGCTAAAATTTAAAAACTT+AGG | - | chr1.2:65632340-65632359 | None:intergenic | 20.0% |
| !! | TATATAATCTTAGCATCTTA+TGG | - | chr1.2:65633828-65633847 | None:intergenic | 20.0% |
| !! | TATTAGAAAAATGCACTAAA+AGG | + | chr1.2:65634025-65634044 | MS.gene20787:intron | 20.0% |
| !!! | ATTTCTCTTTTAATACATGT+TGG | - | chr1.2:65632924-65632943 | None:intergenic | 20.0% |
| !!! | ATTTTTATACGAGTCTTTAA+AGG | + | chr1.2:65633253-65633272 | MS.gene20787:intron | 20.0% |
| !!! | GAAAAATAACCTTCATTTTA+GGG | - | chr1.2:65633977-65633996 | None:intergenic | 20.0% |
| !!! | TGAAAAATAACCTTCATTTT+AGG | - | chr1.2:65633978-65633997 | None:intergenic | 20.0% |
| !!! | TTTCTCTTTTAATACATGTT+GGG | - | chr1.2:65632923-65632942 | None:intergenic | 20.0% |
| ! | AACTTATCTACTCCTATTAA+AGG | + | chr1.2:65634127-65634146 | MS.gene20787:intron | 25.0% |
| ! | AATTTATCTTCAAATACTGC+TGG | + | chr1.2:65632822-65632841 | MS.gene20787:intron | 25.0% |
| ! | ACTTATCTACTCCTATTAAA+GGG | + | chr1.2:65634128-65634147 | MS.gene20787:intron | 25.0% |
| ! | AGTTGCAAATATAAATCTTG+GGG | + | chr1.2:65632787-65632806 | MS.gene20787:intron | 25.0% |
| ! | CTTATCATTGATCAAACTTT+GGG | + | chr1.2:65633764-65633783 | MS.gene20787:intron | 25.0% |
| ! | GACTCGTATAAAAATTGAAT+TGG | - | chr1.2:65633248-65633267 | None:intergenic | 25.0% |
| ! | GATAGAATGAGAATTACATT+AGG | - | chr1.2:65632437-65632456 | None:intergenic | 25.0% |
| ! | TAATCCTAAATAACCTGTAT+TGG | + | chr1.2:65633377-65633396 | MS.gene20787:intron | 25.0% |
| ! | TATAGAAACCAATGAAGATT+AGG | - | chr1.2:65632381-65632400 | None:intergenic | 25.0% |
| ! | TCTTATCATTGATCAAACTT+TGG | + | chr1.2:65633763-65633782 | MS.gene20787:intron | 25.0% |
| ! | TGAAGACCATATATTCATAA+AGG | - | chr1.2:65633120-65633139 | None:intergenic | 25.0% |
| ! | TGTAGAATATATTACAGAAC+TGG | + | chr1.2:65632569-65632588 | MS.gene20787:CDS | 25.0% |
| !! | AATACAGGTTATTTAGGATT+AGG | - | chr1.2:65633378-65633397 | None:intergenic | 25.0% |
| !! | GTGGTTTAAAGTTAATAGTT+GGG | + | chr1.2:65633189-65633208 | MS.gene20787:intron | 25.0% |
| AGAAAAATGCACTAAAAGGA+AGG | + | chr1.2:65634029-65634048 | MS.gene20787:intron | 30.0% | |
| AGAACCATTAATACCAACTT+TGG | - | chr1.2:65633330-65633349 | None:intergenic | 30.0% | |
| AGTTGTTAGTTGTTAGTTAC+TGG | + | chr1.2:65633213-65633232 | MS.gene20787:intron | 30.0% | |
| ATCTTAAACTTGATTGACCA+TGG | + | chr1.2:65633601-65633620 | MS.gene20787:intron | 30.0% | |
| ATTGTCTTCCTAATCTTCAT+TGG | + | chr1.2:65632370-65632389 | MS.gene20787:intron | 30.0% | |
| GGTCTTCAATTGCTTATTAT+AGG | + | chr1.2:65633132-65633151 | MS.gene20787:intron | 30.0% | |
| GTACATAAAGCACAAGATAT+TGG | + | chr1.2:65632693-65632712 | MS.gene20787:CDS | 30.0% | |
| TAATGTATCTGTCAAATCTG+AGG | + | chr1.2:65633417-65633436 | MS.gene20787:intron | 30.0% | |
| TGAACCAATACAGGTTATTT+AGG | - | chr1.2:65633384-65633403 | None:intergenic | 30.0% | |
| TTAGCTAGAAATATCACTTC+TGG | + | chr1.2:65633090-65633109 | MS.gene20787:intron | 30.0% | |
| ! | GGTGGTTTAAAGTTAATAGT+TGG | + | chr1.2:65633188-65633207 | MS.gene20787:intron | 30.0% |
| !! | ACCTGTATTGGTTCAATAAT+CGG | + | chr1.2:65633389-65633408 | MS.gene20787:intron | 30.0% |
| !! | TAAGCCAAAGTTGGTATTAA+TGG | + | chr1.2:65633323-65633342 | MS.gene20787:intron | 30.0% |
| !!! | TTAGTTTTCTGGTTCCTTAA+AGG | + | chr1.2:65633870-65633889 | MS.gene20787:intron | 30.0% |
| AAAAAATCGCGTAAGGACAA+AGG | - | chr1.2:65632655-65632674 | None:intergenic | 35.0% | |
| AACATGATGAAGAGAATCTG+AGG | + | chr1.2:65634329-65634348 | MS.gene20787:CDS | 35.0% | |
| AAGCTTCTATAAGCCAAAGT+TGG | + | chr1.2:65633314-65633333 | MS.gene20787:intron | 35.0% | |
| ACAAGATATTGGATCACAGA+GGG | + | chr1.2:65632704-65632723 | MS.gene20787:CDS | 35.0% | |
| ACAGCATAATTATGCATGAG+TGG | - | chr1.2:65633641-65633660 | None:intergenic | 35.0% | |
| ACCATAAAGCTTATGGAAGA+AGG | - | chr1.2:65633711-65633730 | None:intergenic | 35.0% | |
| ACCGATTATTGAACCAATAC+AGG | - | chr1.2:65633393-65633412 | None:intergenic | 35.0% | |
| ACTGTTAGCACTATAATAGC+CGG | + | chr1.2:65633531-65633550 | MS.gene20787:intron | 35.0% | |
| AGTTTATATCTCAGAACTCC+TGG | - | chr1.2:65633934-65633953 | None:intergenic | 35.0% | |
| ATGAAGAGCTAAAACAAGCA+AGG | + | chr1.2:65634296-65634315 | MS.gene20787:CDS | 35.0% | |
| CAGAGAATTCTTTCTCAAGT+AGG | + | chr1.2:65633283-65633302 | MS.gene20787:intron | 35.0% | |
| CCAAAGAGTTAAGCGATTTA+AGG | - | chr1.2:65633461-65633480 | None:intergenic | 35.0% | |
| CCATAAAGCTTATGGAAGAA+GGG | - | chr1.2:65633710-65633729 | None:intergenic | 35.0% | |
| CCTTAAATCGCTTAACTCTT+TGG | + | chr1.2:65633458-65633477 | MS.gene20787:intron | 35.0% | |
| CTTAACTCTTTGGATCAACA+GGG | + | chr1.2:65633468-65633487 | MS.gene20787:intron | 35.0% | |
| GGTCTGCCTTTATGAATATA+TGG | + | chr1.2:65633111-65633130 | MS.gene20787:intron | 35.0% | |
| TAACTTTAAACCACCATTGC+AGG | - | chr1.2:65633183-65633202 | None:intergenic | 35.0% | |
| TAGACAACAGTTCTGTACAA+CGG | - | chr1.2:65634273-65634292 | None:intergenic | 35.0% | |
| TCCTAGAACCATAAAGCTTA+TGG | - | chr1.2:65633718-65633737 | None:intergenic | 35.0% | |
| TCTTCAAATACTGCTGGAAA+TGG | + | chr1.2:65632828-65632847 | MS.gene20787:intron | 35.0% | |
| TTAAAGGCTCATACACACTT+CGG | + | chr1.2:65633886-65633905 | MS.gene20787:intron | 35.0% | |
| TTAACTTAGTCTAAGTGCCA+TGG | + | chr1.2:65632620-65632639 | MS.gene20787:intron | 35.0% | |
| ! | AACTTTGGCTTATAGAAGCT+TGG | - | chr1.2:65633315-65633334 | None:intergenic | 35.0% |
| ! | ACAAGAAGCTTTATGAGTCT+TGG | - | chr1.2:65634224-65634243 | None:intergenic | 35.0% |
| ! | ACTTTGGCTTATAGAAGCTT+GGG | - | chr1.2:65633314-65633333 | None:intergenic | 35.0% |
| ! | CAAGTTTAAGATGAGGAAGA+TGG | - | chr1.2:65633593-65633612 | None:intergenic | 35.0% |
| ! | GGTCAATCAAGTTTAAGATG+AGG | - | chr1.2:65633600-65633619 | None:intergenic | 35.0% |
| ! | TATCTGTCAAATCTGAGGTT+AGG | + | chr1.2:65633422-65633441 | MS.gene20787:intron | 35.0% |
| ! | TATGGTGCATTTAGCTTCAT+TGG | - | chr1.2:65633810-65633829 | None:intergenic | 35.0% |
| ! | TCCATAAGCTTTATGGTTCT+AGG | + | chr1.2:65633714-65633733 | MS.gene20787:intron | 35.0% |
| ! | TCTGTACAACGGTTAAGTTT+TGG | - | chr1.2:65634262-65634281 | None:intergenic | 35.0% |
| ! | TCTTTTAATACATGTTGGGC+AGG | - | chr1.2:65632919-65632938 | None:intergenic | 35.0% |
| ! | TTTCCTCTATTTGATTCGCA+AGG | + | chr1.2:65632746-65632765 | MS.gene20787:CDS | 35.0% |
| !! | ATTGATCAAACTTTGGGTTG+AGG | + | chr1.2:65633770-65633789 | MS.gene20787:intron | 35.0% |
| !!! | TCTTTGTTTTGATGAGGTTC+CGG | - | chr1.2:65632238-65632257 | None:intergenic | 35.0% |
| AAAGCTTATGGAAGAAGGGA+GGG | - | chr1.2:65633706-65633725 | None:intergenic | 40.0% | |
| AAGATATTGGATCACAGAGG+GGG | + | chr1.2:65632706-65632725 | MS.gene20787:CDS | 40.0% | |
| ATAAGCATGCTATGTCACAG+TGG | + | chr1.2:65633157-65633176 | MS.gene20787:intron | 40.0% | |
| ATAGTGCAGCACATGATGTA+TGG | + | chr1.2:65632398-65632417 | MS.gene20787:intron | 40.0% | |
| ATGCACATGCCCTAAAATGA+AGG | + | chr1.2:65633965-65633984 | MS.gene20787:intron | 40.0% | |
| ATTATGCATGAGTGGTCCAA+AGG | - | chr1.2:65633633-65633652 | None:intergenic | 40.0% | |
| CAAGATATTGGATCACAGAG+GGG | + | chr1.2:65632705-65632724 | MS.gene20787:CDS | 40.0% | |
| CACAAGATATTGGATCACAG+AGG | + | chr1.2:65632703-65632722 | MS.gene20787:CDS | 40.0% | |
| CCCTTCTTCCATAAGCTTTA+TGG | + | chr1.2:65633707-65633726 | MS.gene20787:intron | 40.0% | |
| CCTATTAAAGGGTCGAATTC+AGG | + | chr1.2:65634139-65634158 | MS.gene20787:intron | 40.0% | |
| CCTGAATTCGACCCTTTAAT+AGG | - | chr1.2:65634142-65634161 | None:intergenic | 40.0% | |
| GAAGTGTGTATGAGCCTTTA+AGG | - | chr1.2:65633887-65633906 | None:intergenic | 40.0% | |
| GCTGTTGTCACTATTCTCAA+GGG | + | chr1.2:65632865-65632884 | MS.gene20787:intron | 40.0% | |
| GCTTAAACCTTTCCTACACT+TGG | + | chr1.2:65633908-65633927 | MS.gene20787:intron | 40.0% | |
| GCTTAACTCTTTGGATCAAC+AGG | + | chr1.2:65633467-65633486 | MS.gene20787:intron | 40.0% | |
| GGATCAACAGGGTAATTGTA+TGG | + | chr1.2:65633479-65633498 | MS.gene20787:intron | 40.0% | |
| GTACCTTGCGAATCAAATAG+AGG | - | chr1.2:65632752-65632771 | None:intergenic | 40.0% | |
| TAAAGCTTATGGAAGAAGGG+AGG | - | chr1.2:65633707-65633726 | None:intergenic | 40.0% | |
| TAAAGCTTCTTGTGTACTGC+AGG | + | chr1.2:65634231-65634250 | MS.gene20787:intron | 40.0% | |
| TGATGAAGAGAATCTGAGGA+AGG | + | chr1.2:65634333-65634352 | MS.gene20787:CDS | 40.0% | |
| TGCTGTTGTCACTATTCTCA+AGG | + | chr1.2:65632864-65632883 | MS.gene20787:intron | 40.0% | |
| ! | AGGATTAGGAACTGATTCAC+AGG | - | chr1.2:65633364-65633383 | None:intergenic | 40.0% |
| ! | GAATCTGAGGAAGGTTTTTG+AGG | + | chr1.2:65634342-65634361 | MS.gene20787:CDS | 40.0% |
| !!! | AGCTGCTCTTTGTTTTGATG+AGG | - | chr1.2:65632244-65632263 | None:intergenic | 40.0% |
| CAGCACATGATGTATGGCTT+CGG | + | chr1.2:65632404-65632423 | MS.gene20787:CDS | 45.0% | |
| CAGGAAGTGGCTAATTCAAG+TGG | - | chr1.2:65632521-65632540 | None:intergenic | 45.0% | |
| CCAGAAAACTAACCTCTGCA+AGG | - | chr1.2:65633862-65633881 | None:intergenic | 45.0% | |
| GAAAACTAACCTCTGCAAGG+AGG | - | chr1.2:65633859-65633878 | None:intergenic | 45.0% | |
| TTAGCCACTTCCTGAAAGTG+TGG | + | chr1.2:65632527-65632546 | MS.gene20787:intron | 45.0% | |
| TTAGTCTAAGTGCCATGGAG+TGG | + | chr1.2:65632625-65632644 | MS.gene20787:intron | 45.0% | |
| !! | TCTGAGGAAGGTTTTTGAGG+TGG | + | chr1.2:65634345-65634364 | MS.gene20787:CDS | 45.0% |
| !!! | CCTTGCAGAGGTTAGTTTTC+TGG | + | chr1.2:65633859-65633878 | MS.gene20787:intron | 45.0% |
| AACCTTTCCTACACTTGGCC+AGG | + | chr1.2:65633913-65633932 | MS.gene20787:intron | 50.0% | |
| ACTTCATCCAAGCGCAGAAG+AGG | + | chr1.2:65632282-65632301 | MS.gene20787:CDS | 50.0% | |
| CACTATAATAGCCGGACTGC+TGG | + | chr1.2:65633539-65633558 | MS.gene20787:intron | 50.0% | |
| GAAAACTCCTCTTCTGCGCT+TGG | - | chr1.2:65632292-65632311 | None:intergenic | 50.0% | |
| TATGTCACAGTGGCCTGCAA+TGG | + | chr1.2:65633167-65633186 | MS.gene20787:intron | 50.0% | |
| TCCATAAGCGCCACACTTTC+AGG | - | chr1.2:65632540-65632559 | None:intergenic | 50.0% | |
| TCTAAGTGCCATGGAGTGGT+TGG | + | chr1.2:65632629-65632648 | MS.gene20787:intron | 50.0% | |
| ! | TCCTGAAAGTGTGGCGCTTA+TGG | + | chr1.2:65632536-65632555 | MS.gene20787:CDS | 50.0% |
| ! | TGAAGTGTCTGGAGGTTGTG+AGG | - | chr1.2:65632268-65632287 | None:intergenic | 50.0% |
| !! | TTGACCATGGTGCTGTCCTT+TGG | + | chr1.2:65633614-65633633 | MS.gene20787:intron | 50.0% |
| AGCGCCACACTTTCAGGAAG+TGG | - | chr1.2:65632534-65632553 | None:intergenic | 55.0% | |
| ATGTTGCAGCCTCCTTGCAG+AGG | + | chr1.2:65633847-65633866 | MS.gene20787:intron | 55.0% | |
| CAGAACTCCTGGCCAAGTGT+AGG | - | chr1.2:65633923-65633942 | None:intergenic | 55.0% | |
| CAGAACTGTGTCCAGCAGTC+CGG | - | chr1.2:65633553-65633572 | None:intergenic | 55.0% | |
| CTCCTGGCCAAGTGTAGGAA+AGG | - | chr1.2:65633918-65633937 | None:intergenic | 55.0% | |
| GACAAAGGCCAACCACTCCA+TGG | - | chr1.2:65632640-65632659 | None:intergenic | 55.0% | |
| GAGGGGGAAGCTATCAGTTG+AGG | + | chr1.2:65632722-65632741 | MS.gene20787:CDS | 55.0% | |
| GAGGTGGATGAACCAGCAGA+AGG | + | chr1.2:65634361-65634380 | MS.gene20787:CDS | 55.0% | |
| TGGTCCAAAGGACAGCACCA+TGG | - | chr1.2:65633621-65633640 | None:intergenic | 55.0% | |
| ! | CGCTTGGATGAAGTGTCTGG+AGG | - | chr1.2:65632276-65632295 | None:intergenic | 55.0% |
| ! | CTGCGCTTGGATGAAGTGTC+TGG | - | chr1.2:65632279-65632298 | None:intergenic | 55.0% |
| GTCACAGTGGCCTGCAATGG+TGG | + | chr1.2:65633170-65633189 | MS.gene20787:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65632219 | 65634387 | 65632219 | ID=MS.gene20787 |
| chr1.2 | mRNA | 65632219 | 65634387 | 65632219 | ID=MS.gene20787.t1;Parent=MS.gene20787 |
| chr1.2 | exon | 65632219 | 65632321 | 65632219 | ID=MS.gene20787.t1.exon1;Parent=MS.gene20787.t1 |
| chr1.2 | CDS | 65632219 | 65632321 | 65632219 | ID=cds.MS.gene20787.t1;Parent=MS.gene20787.t1 |
| chr1.2 | exon | 65632402 | 65632439 | 65632402 | ID=MS.gene20787.t1.exon2;Parent=MS.gene20787.t1 |
| chr1.2 | CDS | 65632402 | 65632439 | 65632402 | ID=cds.MS.gene20787.t1;Parent=MS.gene20787.t1 |
| chr1.2 | exon | 65632531 | 65632590 | 65632531 | ID=MS.gene20787.t1.exon3;Parent=MS.gene20787.t1 |
| chr1.2 | CDS | 65632531 | 65632590 | 65632531 | ID=cds.MS.gene20787.t1;Parent=MS.gene20787.t1 |
| chr1.2 | exon | 65632693 | 65632767 | 65632693 | ID=MS.gene20787.t1.exon4;Parent=MS.gene20787.t1 |
| chr1.2 | CDS | 65632693 | 65632767 | 65632693 | ID=cds.MS.gene20787.t1;Parent=MS.gene20787.t1 |
| chr1.2 | exon | 65634253 | 65634387 | 65634253 | ID=MS.gene20787.t1.exon5;Parent=MS.gene20787.t1 |
| chr1.2 | CDS | 65634253 | 65634387 | 65634253 | ID=cds.MS.gene20787.t1;Parent=MS.gene20787.t1 |
| Gene Sequence |
| Protein sequence |