Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20838.t1 | XP_003591431.1 | 100 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 9.20E-54 | 219.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20838.t1 | Q6NQH4 | 75.8 | 95 | 23 | 0 | 30 | 124 | 30 | 124 | 5.1e-37 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20838.t1 | B7FH99 | 100.0 | 108 | 0 | 0 | 29 | 136 | 29 | 136 | 6.7e-54 | 219.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20838 | MS.gene81197 | PPI |
| MS.gene20838 | MS.gene73008 | PPI |
| MS.gene20838 | MS.gene033520 | PPI |
| MS.gene024074 | MS.gene20838 | PPI |
| MS.gene20838 | MS.gene042025 | PPI |
| MS.gene20838 | MS.gene42910 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20838.t1 | MTR_1g087370 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.31e-100 | 282 |
| MS.gene20838.t1 | MTR_1g087370 | 95.876 | 97 | 4 | 0 | 1 | 97 | 1 | 97 | 3.03e-65 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20838.t1 | AT1G02680 | 69.091 | 110 | 30 | 1 | 15 | 124 | 19 | 124 | 1.31e-52 | 162 |
Find 27 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATAAGCGCCACACTTTC+AGG | 0.195120 | 1.3:-61813387 | None:intergenic |
| TCCTGAAAGTGTGGCGCTTA+TGG | 0.280852 | 1.3:+61813386 | MS.gene20838:CDS |
| GTACATAAAGCACAAGATAT+TGG | 0.348377 | 1.3:+61813543 | MS.gene20838:CDS |
| TCTGTACAACGGTTAAGTTT+TGG | 0.401058 | 1.3:-61815124 | None:intergenic |
| GAAAACTCCTCTTCTGCGCT+TGG | 0.409109 | 1.3:-61813139 | None:intergenic |
| TCAACCATTCATCCTTCTGC+TGG | 0.456641 | 1.3:-61815238 | None:intergenic |
| TGTAGAATATATTACAGAAC+TGG | 0.468418 | 1.3:+61813419 | MS.gene20838:CDS |
| CTGCGCTTGGATGAAGTGTC+TGG | 0.471299 | 1.3:-61813126 | None:intergenic |
| ATAGTGCAGCACATGATGTA+TGG | 0.483674 | 1.3:+61813248 | MS.gene20838:intron |
| CAGCACATGATGTATGGCTT+CGG | 0.502212 | 1.3:+61813254 | MS.gene20838:CDS |
| ACTTCATCCAAGCGCAGAAG+AGG | 0.506271 | 1.3:+61813132 | MS.gene20838:CDS |
| AGCGCCACACTTTCAGGAAG+TGG | 0.521650 | 1.3:-61813381 | None:intergenic |
| GTACCTTGCGAATCAAATAG+AGG | 0.544458 | 1.3:-61813599 | None:intergenic |
| ACAATGAGCAATTCTGCTGC+CGG | 0.562228 | 1.3:+61813066 | None:intergenic |
| ACAAGATATTGGATCACAGA+GGG | 0.592434 | 1.3:+61813554 | MS.gene20838:CDS |
| GAGGTGGATGAACCAGCAGA+AGG | 0.597040 | 1.3:+61815226 | MS.gene20838:CDS |
| TTTCCTCTATTTGATTCGCA+AGG | 0.600469 | 1.3:+61813596 | MS.gene20838:CDS |
| AACATGATGAAGAGAATCTG+AGG | 0.603292 | 1.3:+61815194 | MS.gene20838:CDS |
| TGATGAAGAGAATCTGAGGA+AGG | 0.619169 | 1.3:+61815198 | MS.gene20838:CDS |
| CGCTTGGATGAAGTGTCTGG+AGG | 0.624183 | 1.3:-61813123 | None:intergenic |
| CACAAGATATTGGATCACAG+AGG | 0.626166 | 1.3:+61813553 | MS.gene20838:CDS |
| TGAAGTGTCTGGAGGTTGTG+AGG | 0.629236 | 1.3:-61813115 | None:intergenic |
| ATGAAGAGCTAAAACAAGCA+AGG | 0.630743 | 1.3:+61815161 | MS.gene20838:CDS |
| TTAGCCACTTCCTGAAAGTG+TGG | 0.632131 | 1.3:+61813377 | MS.gene20838:intron |
| TAGACAACAGTTCTGTACAA+CGG | 0.672921 | 1.3:-61815135 | None:intergenic |
| AAGATATTGGATCACAGAGG+GGG | 0.677224 | 1.3:+61813556 | MS.gene20838:CDS |
| CAAGATATTGGATCACAGAG+GGG | 0.705641 | 1.3:+61813555 | MS.gene20838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTATTTTTTTGTCA+AGG | + | chr1.3:61813521-61813540 | MS.gene20838:intron | 10.0% |
| !! | AAAAATTATTACATTCTCTT+TGG | - | chr1.3:61813164-61813183 | None:intergenic | 15.0% |
| !! | TATTCATTAACAATGAATAT+GGG | + | chr1.3:61814357-61814376 | MS.gene20838:intron | 15.0% |
| !! | TTATTCATTAACAATGAATA+TGG | + | chr1.3:61814356-61814375 | MS.gene20838:intron | 15.0% |
| !!! | ATTTTTATACAAGTCTTTAA+AGG | + | chr1.3:61814103-61814122 | MS.gene20838:intron | 15.0% |
| !! | AAAGTTGCAAATATAAATCT+TGG | + | chr1.3:61813635-61813654 | MS.gene20838:intron | 20.0% |
| !! | AAGTTGCAAATATAAATCTT+GGG | + | chr1.3:61813636-61813655 | MS.gene20838:intron | 20.0% |
| !! | AATAAATAAAAAATCGCGTA+AGG | - | chr1.3:61813512-61813531 | None:intergenic | 20.0% |
| !! | ACGCTAAAATTTAAAAACTT+AGG | - | chr1.3:61813190-61813209 | None:intergenic | 20.0% |
| !! | ATCTTATCATTATCAAACTT+TGG | + | chr1.3:61814612-61814631 | MS.gene20838:intron | 20.0% |
| !! | GACTTGTATAAAAATTGAAT+TGG | - | chr1.3:61814098-61814117 | None:intergenic | 20.0% |
| !! | TATATAATCTTAGCATCTTA+TGG | - | chr1.3:61814693-61814712 | None:intergenic | 20.0% |
| !! | TATTAGAAAAATGCACTAAA+AGG | + | chr1.3:61814890-61814909 | MS.gene20838:intron | 20.0% |
| !! | TCTTATCATTATCAAACTTT+GGG | + | chr1.3:61814613-61814632 | MS.gene20838:intron | 20.0% |
| !!! | ATTTCTCTTTTAATACATGT+TGG | - | chr1.3:61813774-61813793 | None:intergenic | 20.0% |
| !!! | GAAAAATAACCTTCATTTTA+GGG | - | chr1.3:61814842-61814861 | None:intergenic | 20.0% |
| !!! | TGAAAAATAACCTTCATTTT+AGG | - | chr1.3:61814843-61814862 | None:intergenic | 20.0% |
| !!! | TTTCTCTTTTAATACATGTT+GGG | - | chr1.3:61813773-61813792 | None:intergenic | 20.0% |
| ! | AAAATATCAAGATTTGATCG+TGG | - | chr1.3:61815064-61815083 | None:intergenic | 25.0% |
| ! | AACTTATCTACTCCTATTAA+AGG | + | chr1.3:61814992-61815011 | MS.gene20838:intron | 25.0% |
| ! | AATTTATCTTCAAATACTGC+TGG | + | chr1.3:61813672-61813691 | MS.gene20838:intron | 25.0% |
| ! | ACTTATCTACTCCTATTAAA+GGG | + | chr1.3:61814993-61815012 | MS.gene20838:intron | 25.0% |
| ! | AGTTGCAAATATAAATCTTG+GGG | + | chr1.3:61813637-61813656 | MS.gene20838:intron | 25.0% |
| ! | GATAGAATGAGAATTACATT+AGG | - | chr1.3:61813287-61813306 | None:intergenic | 25.0% |
| ! | TAATCCTAAATAACCTGTAT+TGG | + | chr1.3:61814227-61814246 | MS.gene20838:intron | 25.0% |
| ! | TATAGAAACCAATGAAGATT+AGG | - | chr1.3:61813231-61813250 | None:intergenic | 25.0% |
| ! | TGAAGACCATATATTCATAA+AGG | - | chr1.3:61813970-61813989 | None:intergenic | 25.0% |
| ! | TGTAGAATATATTACAGAAC+TGG | + | chr1.3:61813419-61813438 | MS.gene20838:CDS | 25.0% |
| !! | AATACAGGTTATTTAGGATT+AGG | - | chr1.3:61814228-61814247 | None:intergenic | 25.0% |
| !! | GTGGTTTAAAGTTAATAGTT+GGG | + | chr1.3:61814039-61814058 | MS.gene20838:intron | 25.0% |
| AGAAAAATGCACTAAAAGGA+AGG | + | chr1.3:61814894-61814913 | MS.gene20838:intron | 30.0% | |
| AGAACCATTAATACCAACTT+TGG | - | chr1.3:61814180-61814199 | None:intergenic | 30.0% | |
| AGTTGTTAGTTGTTAGTTAC+TGG | + | chr1.3:61814063-61814082 | MS.gene20838:intron | 30.0% | |
| ATCTTAAACTTGATTGACCA+TGG | + | chr1.3:61814451-61814470 | MS.gene20838:intron | 30.0% | |
| ATTGTCTTCCTAATCTTCAT+TGG | + | chr1.3:61813220-61813239 | MS.gene20838:intron | 30.0% | |
| GGTCTTCAATTGCTTATTAT+AGG | + | chr1.3:61813982-61814001 | MS.gene20838:intron | 30.0% | |
| GTACATAAAGCACAAGATAT+TGG | + | chr1.3:61813543-61813562 | MS.gene20838:CDS | 30.0% | |
| TAATGTATCTGTCAAATCTG+AGG | + | chr1.3:61814267-61814286 | MS.gene20838:intron | 30.0% | |
| TGAACCAATACAGGTTATTT+AGG | - | chr1.3:61814234-61814253 | None:intergenic | 30.0% | |
| TTAGCTAGAAATATCACTTC+TGG | + | chr1.3:61813940-61813959 | MS.gene20838:intron | 30.0% | |
| ! | GGTGGTTTAAAGTTAATAGT+TGG | + | chr1.3:61814038-61814057 | MS.gene20838:intron | 30.0% |
| !! | ACCTGTATTGGTTCAATAAT+CGG | + | chr1.3:61814239-61814258 | MS.gene20838:intron | 30.0% |
| !! | TAAGCCAAAGTTGGTATTAA+TGG | + | chr1.3:61814173-61814192 | MS.gene20838:intron | 30.0% |
| !!! | TTAGTTTTCTGGTTCCTTAA+AGG | + | chr1.3:61814735-61814754 | MS.gene20838:intron | 30.0% |
| AAAAAATCGCGTAAGGACAA+AGG | - | chr1.3:61813505-61813524 | None:intergenic | 35.0% | |
| AACATGATGAAGAGAATCTG+AGG | + | chr1.3:61815194-61815213 | MS.gene20838:CDS | 35.0% | |
| AAGCTTCTATAAGCCAAAGT+TGG | + | chr1.3:61814164-61814183 | MS.gene20838:intron | 35.0% | |
| ACAAGATATTGGATCACAGA+GGG | + | chr1.3:61813554-61813573 | MS.gene20838:CDS | 35.0% | |
| ACAGCATAATTATGCATGAG+TGG | - | chr1.3:61814491-61814510 | None:intergenic | 35.0% | |
| ACCATAAAGCTTATGGAAGA+AGG | - | chr1.3:61814561-61814580 | None:intergenic | 35.0% | |
| ACCGATTATTGAACCAATAC+AGG | - | chr1.3:61814243-61814262 | None:intergenic | 35.0% | |
| ACTGTTAGCACTATAATAGC+CGG | + | chr1.3:61814381-61814400 | MS.gene20838:intron | 35.0% | |
| AGTTTATATCTCAGAACTCC+TGG | - | chr1.3:61814799-61814818 | None:intergenic | 35.0% | |
| ATGAAGAGCTAAAACAAGCA+AGG | + | chr1.3:61815161-61815180 | MS.gene20838:CDS | 35.0% | |
| CAGAGAATTCTTTCTCAAGT+AGG | + | chr1.3:61814133-61814152 | MS.gene20838:intron | 35.0% | |
| CCAAAGAGTTAAGCGATTTA+AGG | - | chr1.3:61814311-61814330 | None:intergenic | 35.0% | |
| CCATAAAGCTTATGGAAGAA+GGG | - | chr1.3:61814560-61814579 | None:intergenic | 35.0% | |
| CCTTAAATCGCTTAACTCTT+TGG | + | chr1.3:61814308-61814327 | MS.gene20838:intron | 35.0% | |
| CTTAACTCTTTGGATCAACA+GGG | + | chr1.3:61814318-61814337 | MS.gene20838:intron | 35.0% | |
| GGTCTGCCTTTATGAATATA+TGG | + | chr1.3:61813961-61813980 | MS.gene20838:intron | 35.0% | |
| TAACTTTAAACCACCATTGC+AGG | - | chr1.3:61814033-61814052 | None:intergenic | 35.0% | |
| TAGACAACAGTTCTGTACAA+CGG | - | chr1.3:61815138-61815157 | None:intergenic | 35.0% | |
| TCCTAGAACCATAAAGCTTA+TGG | - | chr1.3:61814568-61814587 | None:intergenic | 35.0% | |
| TCTTCAAATACTGCTGGAAA+TGG | + | chr1.3:61813678-61813697 | MS.gene20838:intron | 35.0% | |
| TTAAAGGCTCATACACACTT+CGG | + | chr1.3:61814751-61814770 | MS.gene20838:intron | 35.0% | |
| TTAACTTAGTCTAAGTGCCA+TGG | + | chr1.3:61813470-61813489 | MS.gene20838:intron | 35.0% | |
| ! | AACTTTGGCTTATAGAAGCT+TGG | - | chr1.3:61814165-61814184 | None:intergenic | 35.0% |
| ! | ACAAGAAGCTTTATGAGTCT+TGG | - | chr1.3:61815089-61815108 | None:intergenic | 35.0% |
| ! | ACTTTGGCTTATAGAAGCTT+GGG | - | chr1.3:61814164-61814183 | None:intergenic | 35.0% |
| ! | CAAGTTTAAGATGAGGAAGT+TGG | - | chr1.3:61814443-61814462 | None:intergenic | 35.0% |
| ! | GGTCAATCAAGTTTAAGATG+AGG | - | chr1.3:61814450-61814469 | None:intergenic | 35.0% |
| ! | TATCTGTCAAATCTGAGGTT+AGG | + | chr1.3:61814272-61814291 | MS.gene20838:intron | 35.0% |
| ! | TATGGTGCATTTAGCTTCAT+TGG | - | chr1.3:61814675-61814694 | None:intergenic | 35.0% |
| ! | TCCATAAGCTTTATGGTTCT+AGG | + | chr1.3:61814564-61814583 | MS.gene20838:intron | 35.0% |
| ! | TCTGTACAACGGTTAAGTTT+TGG | - | chr1.3:61815127-61815146 | None:intergenic | 35.0% |
| ! | TCTTTTAATACATGTTGGGC+AGG | - | chr1.3:61813769-61813788 | None:intergenic | 35.0% |
| ! | TTTCCTCTATTTGATTCGCA+AGG | + | chr1.3:61813596-61813615 | MS.gene20838:CDS | 35.0% |
| !!! | TCTTTGTTTTGATGAGGTTC+CGG | - | chr1.3:61813088-61813107 | None:intergenic | 35.0% |
| AAAGCTTATGGAAGAAGGGA+GGG | - | chr1.3:61814556-61814575 | None:intergenic | 40.0% | |
| AAGATATTGGATCACAGAGG+GGG | + | chr1.3:61813556-61813575 | MS.gene20838:CDS | 40.0% | |
| ATAAGCATGCTATGTCACAG+TGG | + | chr1.3:61814007-61814026 | MS.gene20838:intron | 40.0% | |
| ATAGTGCAGCACATGATGTA+TGG | + | chr1.3:61813248-61813267 | MS.gene20838:intron | 40.0% | |
| ATGCACATGCCCTAAAATGA+AGG | + | chr1.3:61814830-61814849 | MS.gene20838:intron | 40.0% | |
| ATTATGCATGAGTGGTCCAA+AGG | - | chr1.3:61814483-61814502 | None:intergenic | 40.0% | |
| CAAGATATTGGATCACAGAG+GGG | + | chr1.3:61813555-61813574 | MS.gene20838:CDS | 40.0% | |
| CACAAGATATTGGATCACAG+AGG | + | chr1.3:61813553-61813572 | MS.gene20838:CDS | 40.0% | |
| CCCTTCTTCCATAAGCTTTA+TGG | + | chr1.3:61814557-61814576 | MS.gene20838:intron | 40.0% | |
| CCTATTAAAGGGTCGAATTC+AGG | + | chr1.3:61815004-61815023 | MS.gene20838:intron | 40.0% | |
| CCTGAATTCGACCCTTTAAT+AGG | - | chr1.3:61815007-61815026 | None:intergenic | 40.0% | |
| GAAGTGTGTATGAGCCTTTA+AGG | - | chr1.3:61814752-61814771 | None:intergenic | 40.0% | |
| GCTGTTGTCACTATTCTCAA+GGG | + | chr1.3:61813715-61813734 | MS.gene20838:intron | 40.0% | |
| GCTTAAACCTTTCCTACACT+TGG | + | chr1.3:61814773-61814792 | MS.gene20838:intron | 40.0% | |
| GCTTAACTCTTTGGATCAAC+AGG | + | chr1.3:61814317-61814336 | MS.gene20838:intron | 40.0% | |
| GGATCAACAGGGTAATTGTA+TGG | + | chr1.3:61814329-61814348 | MS.gene20838:intron | 40.0% | |
| GTACCTTGCGAATCAAATAG+AGG | - | chr1.3:61813602-61813621 | None:intergenic | 40.0% | |
| GTTGAGTGAACTTTGTCTTG+AGG | + | chr1.3:61814635-61814654 | MS.gene20838:intron | 40.0% | |
| TAAAGCTTATGGAAGAAGGG+AGG | - | chr1.3:61814557-61814576 | None:intergenic | 40.0% | |
| TAAAGCTTCTTGTGTACTGC+AGG | + | chr1.3:61815096-61815115 | MS.gene20838:intron | 40.0% | |
| TGATGAAGAGAATCTGAGGA+AGG | + | chr1.3:61815198-61815217 | MS.gene20838:CDS | 40.0% | |
| TGCTGTTGTCACTATTCTCA+AGG | + | chr1.3:61813714-61813733 | MS.gene20838:intron | 40.0% | |
| ! | AGGATTAGGAACTGATTCAC+AGG | - | chr1.3:61814214-61814233 | None:intergenic | 40.0% |
| ! | GAATCTGAGGAAGGTTTTTG+AGG | + | chr1.3:61815207-61815226 | MS.gene20838:CDS | 40.0% |
| !!! | AGCTGCTCTTTGTTTTGATG+AGG | - | chr1.3:61813094-61813113 | None:intergenic | 40.0% |
| CAGCACATGATGTATGGCTT+CGG | + | chr1.3:61813254-61813273 | MS.gene20838:CDS | 45.0% | |
| CAGGAAGTGGCTAATTCAAG+TGG | - | chr1.3:61813371-61813390 | None:intergenic | 45.0% | |
| CCAGAAAACTAACCTCTGCA+AGG | - | chr1.3:61814727-61814746 | None:intergenic | 45.0% | |
| GAAAACTAACCTCTGCAAGG+AGG | - | chr1.3:61814724-61814743 | None:intergenic | 45.0% | |
| TTAGCCACTTCCTGAAAGTG+TGG | + | chr1.3:61813377-61813396 | MS.gene20838:intron | 45.0% | |
| TTAGTCTAAGTGCCATGGAG+TGG | + | chr1.3:61813475-61813494 | MS.gene20838:intron | 45.0% | |
| !! | TCTGAGGAAGGTTTTTGAGG+TGG | + | chr1.3:61815210-61815229 | MS.gene20838:CDS | 45.0% |
| !!! | CCTTGCAGAGGTTAGTTTTC+TGG | + | chr1.3:61814724-61814743 | MS.gene20838:intron | 45.0% |
| AACCTTTCCTACACTTGGCC+AGG | + | chr1.3:61814778-61814797 | MS.gene20838:intron | 50.0% | |
| ACTTCATCCAAGCGCAGAAG+AGG | + | chr1.3:61813132-61813151 | MS.gene20838:CDS | 50.0% | |
| CACTATAATAGCCGGACTGC+TGG | + | chr1.3:61814389-61814408 | MS.gene20838:intron | 50.0% | |
| GAAAACTCCTCTTCTGCGCT+TGG | - | chr1.3:61813142-61813161 | None:intergenic | 50.0% | |
| TATGTCACAGTGGCCTGCAA+TGG | + | chr1.3:61814017-61814036 | MS.gene20838:intron | 50.0% | |
| TCCATAAGCGCCACACTTTC+AGG | - | chr1.3:61813390-61813409 | None:intergenic | 50.0% | |
| TCTAAGTGCCATGGAGTGGT+TGG | + | chr1.3:61813479-61813498 | MS.gene20838:intron | 50.0% | |
| ! | TCCTGAAAGTGTGGCGCTTA+TGG | + | chr1.3:61813386-61813405 | MS.gene20838:CDS | 50.0% |
| ! | TGAAGTGTCTGGAGGTTGTG+AGG | - | chr1.3:61813118-61813137 | None:intergenic | 50.0% |
| !! | TTGACCATGGTGCTGTCCTT+TGG | + | chr1.3:61814464-61814483 | MS.gene20838:intron | 50.0% |
| AGCGCCACACTTTCAGGAAG+TGG | - | chr1.3:61813384-61813403 | None:intergenic | 55.0% | |
| ATGTTGCAGCCTCCTTGCAG+AGG | + | chr1.3:61814712-61814731 | MS.gene20838:intron | 55.0% | |
| CAGAACTCCTGGCCAAGTGT+AGG | - | chr1.3:61814788-61814807 | None:intergenic | 55.0% | |
| CAGAACTGTGTCCAGCAGTC+CGG | - | chr1.3:61814403-61814422 | None:intergenic | 55.0% | |
| CTCCTGGCCAAGTGTAGGAA+AGG | - | chr1.3:61814783-61814802 | None:intergenic | 55.0% | |
| GACAAAGGCCAACCACTCCA+TGG | - | chr1.3:61813490-61813509 | None:intergenic | 55.0% | |
| GAGGGGGAAGCTATCAGTTG+AGG | + | chr1.3:61813572-61813591 | MS.gene20838:CDS | 55.0% | |
| GAGGTGGATGAACCAGCAGA+AGG | + | chr1.3:61815226-61815245 | MS.gene20838:CDS | 55.0% | |
| TGGTCCAAAGGACAGCACCA+TGG | - | chr1.3:61814471-61814490 | None:intergenic | 55.0% | |
| ! | CGCTTGGATGAAGTGTCTGG+AGG | - | chr1.3:61813126-61813145 | None:intergenic | 55.0% |
| ! | CTGCGCTTGGATGAAGTGTC+TGG | - | chr1.3:61813129-61813148 | None:intergenic | 55.0% |
| GTCACAGTGGCCTGCAATGG+TGG | + | chr1.3:61814020-61814039 | MS.gene20838:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61813069 | 61815252 | 61813069 | ID=MS.gene20838 |
| chr1.3 | mRNA | 61813069 | 61815252 | 61813069 | ID=MS.gene20838.t1;Parent=MS.gene20838 |
| chr1.3 | exon | 61813069 | 61813171 | 61813069 | ID=MS.gene20838.t1.exon1;Parent=MS.gene20838.t1 |
| chr1.3 | CDS | 61813069 | 61813171 | 61813069 | ID=cds.MS.gene20838.t1;Parent=MS.gene20838.t1 |
| chr1.3 | exon | 61813252 | 61813289 | 61813252 | ID=MS.gene20838.t1.exon2;Parent=MS.gene20838.t1 |
| chr1.3 | CDS | 61813252 | 61813289 | 61813252 | ID=cds.MS.gene20838.t1;Parent=MS.gene20838.t1 |
| chr1.3 | exon | 61813381 | 61813440 | 61813381 | ID=MS.gene20838.t1.exon3;Parent=MS.gene20838.t1 |
| chr1.3 | CDS | 61813381 | 61813440 | 61813381 | ID=cds.MS.gene20838.t1;Parent=MS.gene20838.t1 |
| chr1.3 | exon | 61813543 | 61813617 | 61813543 | ID=MS.gene20838.t1.exon4;Parent=MS.gene20838.t1 |
| chr1.3 | CDS | 61813543 | 61813617 | 61813543 | ID=cds.MS.gene20838.t1;Parent=MS.gene20838.t1 |
| chr1.3 | exon | 61815118 | 61815252 | 61815118 | ID=MS.gene20838.t1.exon5;Parent=MS.gene20838.t1 |
| chr1.3 | CDS | 61815118 | 61815252 | 61815118 | ID=cds.MS.gene20838.t1;Parent=MS.gene20838.t1 |
| Gene Sequence |
| Protein sequence |
