Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20867.t1 | RHN81020.1 | 79.9 | 482 | 92 | 2 | 1 | 479 | 60 | 539 | 9.00E-213 | 749.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20867.t1 | Q9FZ24 | 44.6 | 419 | 222 | 6 | 29 | 439 | 69 | 485 | 4.2e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20867.t1 | G7ICW4 | 79.9 | 482 | 92 | 2 | 1 | 479 | 1 | 480 | 6.5e-213 | 749.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20867 | MS.gene067932 | PPI |
| MS.gene20867 | MS.gene068115 | PPI |
| MS.gene20867 | MS.gene064795 | PPI |
| MS.gene20867 | MS.gene008872 | PPI |
| MS.gene20867 | MS.gene69362 | PPI |
| MS.gene20867 | MS.gene008863 | PPI |
| MS.gene014383 | MS.gene20867 | PPI |
| MS.gene20867 | MS.gene056432 | PPI |
| MS.gene20867 | MS.gene067938 | PPI |
| MS.gene068116 | MS.gene20867 | PPI |
| MS.gene20867 | MS.gene068108 | PPI |
| MS.gene20867 | MS.gene52807 | PPI |
| MS.gene20867 | MS.gene008871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20867.t1 | MTR_1g086820 | 79.876 | 482 | 92 | 2 | 1 | 479 | 1 | 480 | 0.0 | 780 |
| MS.gene20867.t1 | MTR_8g069570 | 37.723 | 448 | 261 | 8 | 47 | 479 | 39 | 483 | 1.09e-89 | 282 |
| MS.gene20867.t1 | MTR_2g013450 | 28.603 | 458 | 306 | 8 | 28 | 470 | 25 | 476 | 6.15e-57 | 196 |
| MS.gene20867.t1 | MTR_8g007375 | 32.361 | 377 | 248 | 5 | 99 | 471 | 16 | 389 | 7.32e-53 | 183 |
| MS.gene20867.t1 | MTR_1g072300 | 29.561 | 433 | 288 | 8 | 20 | 441 | 25 | 451 | 1.89e-50 | 179 |
| MS.gene20867.t1 | MTR_2g047855 | 30.790 | 367 | 239 | 6 | 13 | 373 | 19 | 376 | 3.88e-49 | 176 |
| MS.gene20867.t1 | MTR_8g465890 | 29.508 | 427 | 278 | 8 | 14 | 429 | 16 | 430 | 1.17e-48 | 174 |
| MS.gene20867.t1 | MTR_3g099753 | 27.536 | 414 | 290 | 5 | 20 | 425 | 26 | 437 | 1.71e-44 | 163 |
| MS.gene20867.t1 | MTR_3g099753 | 27.536 | 414 | 290 | 5 | 20 | 425 | 50 | 461 | 3.39e-44 | 163 |
| MS.gene20867.t1 | MTR_8g059115 | 27.457 | 346 | 247 | 3 | 98 | 441 | 14 | 357 | 4.33e-40 | 149 |
| MS.gene20867.t1 | MTR_2g090290 | 30.000 | 330 | 213 | 6 | 51 | 366 | 52 | 377 | 1.09e-37 | 144 |
| MS.gene20867.t1 | MTR_1g022400 | 27.928 | 333 | 226 | 8 | 46 | 366 | 69 | 399 | 1.35e-33 | 131 |
| MS.gene20867.t1 | MTR_8g031520 | 33.824 | 204 | 124 | 3 | 29 | 221 | 97 | 300 | 2.88e-26 | 108 |
| MS.gene20867.t1 | MTR_7g089770 | 23.096 | 407 | 290 | 12 | 38 | 435 | 163 | 555 | 4.09e-22 | 100 |
| MS.gene20867.t1 | MTR_1g050750 | 24.759 | 311 | 223 | 7 | 38 | 341 | 97 | 403 | 5.89e-19 | 90.1 |
| MS.gene20867.t1 | MTR_2g096880 | 24.383 | 324 | 225 | 8 | 17 | 332 | 35 | 346 | 4.23e-18 | 87.4 |
| MS.gene20867.t1 | MTR_1g114300 | 22.152 | 474 | 297 | 17 | 15 | 435 | 58 | 512 | 1.82e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20867.t1 | AT1G02370 | 40.657 | 487 | 239 | 7 | 1 | 439 | 1 | 485 | 9.78e-121 | 363 |
| MS.gene20867.t1 | AT4G01990 | 42.634 | 448 | 235 | 9 | 11 | 439 | 6 | 450 | 8.21e-114 | 345 |
| MS.gene20867.t1 | AT1G60770 | 36.933 | 463 | 272 | 10 | 33 | 479 | 25 | 483 | 4.37e-86 | 273 |
| MS.gene20867.t1 | AT1G02150 | 32.530 | 415 | 271 | 4 | 33 | 440 | 69 | 481 | 1.08e-67 | 226 |
| MS.gene20867.t1 | AT4G21705 | 31.132 | 424 | 277 | 8 | 28 | 441 | 22 | 440 | 2.80e-59 | 202 |
| MS.gene20867.t1 | AT5G27460 | 31.266 | 403 | 263 | 7 | 39 | 429 | 44 | 444 | 2.49e-54 | 189 |
| MS.gene20867.t1 | AT2G20710 | 29.157 | 415 | 282 | 6 | 32 | 440 | 39 | 447 | 3.07e-51 | 181 |
| MS.gene20867.t1 | AT4G02820 | 28.151 | 476 | 318 | 9 | 8 | 470 | 41 | 505 | 6.06e-49 | 176 |
| MS.gene20867.t1 | AT2G20710 | 30.523 | 344 | 231 | 5 | 99 | 440 | 15 | 352 | 1.13e-45 | 164 |
| MS.gene20867.t1 | AT5G09450 | 30.982 | 326 | 208 | 8 | 25 | 338 | 49 | 369 | 1.03e-38 | 145 |
| MS.gene20867.t1 | AT1G28020 | 28.012 | 332 | 229 | 6 | 35 | 358 | 40 | 369 | 1.00e-31 | 127 |
| MS.gene20867.t1 | AT3G15590 | 29.688 | 256 | 165 | 7 | 45 | 292 | 155 | 403 | 1.50e-22 | 101 |
| MS.gene20867.t1 | AT3G15590 | 29.688 | 256 | 165 | 7 | 45 | 292 | 155 | 403 | 1.50e-22 | 101 |
| MS.gene20867.t1 | AT1G80270 | 22.788 | 452 | 311 | 14 | 39 | 470 | 136 | 569 | 2.08e-22 | 100 |
| MS.gene20867.t1 | AT1G80270 | 22.788 | 452 | 311 | 14 | 39 | 470 | 136 | 569 | 2.08e-22 | 100 |
| MS.gene20867.t1 | AT1G80270 | 22.788 | 452 | 311 | 14 | 39 | 470 | 136 | 569 | 2.08e-22 | 100 |
| MS.gene20867.t1 | AT1G80270 | 22.788 | 452 | 311 | 14 | 39 | 470 | 136 | 569 | 2.08e-22 | 100 |
| MS.gene20867.t1 | AT1G80270 | 22.788 | 452 | 311 | 14 | 39 | 470 | 136 | 569 | 2.08e-22 | 100 |
| MS.gene20867.t1 | AT1G15480 | 25.658 | 304 | 211 | 8 | 28 | 323 | 124 | 420 | 2.95e-21 | 97.4 |
| MS.gene20867.t1 | AT1G07590 | 24.465 | 327 | 233 | 6 | 44 | 362 | 78 | 398 | 2.65e-19 | 91.3 |
| MS.gene20867.t1 | AT3G11380 | 26.230 | 305 | 184 | 6 | 70 | 366 | 82 | 353 | 1.41e-17 | 85.9 |
| MS.gene20867.t1 | AT3G11380 | 31.818 | 176 | 113 | 5 | 51 | 219 | 366 | 541 | 2.08e-11 | 66.6 |
Find 96 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTACGGCCGTTTGATTTC+CGG | 0.229164 | 1.3:-61490506 | MS.gene20867:CDS |
| GGGCATAATAACATTGTTTA+AGG | 0.231511 | 1.3:-61489318 | MS.gene20867:CDS |
| AGGACCTTTCTTTAGGATTC+AGG | 0.243843 | 1.3:-61489171 | MS.gene20867:CDS |
| CCGTATCATTAAGCCTTCTA+AGG | 0.261570 | 1.3:+61489342 | None:intergenic |
| ATTGTTCATGCTGTATTTAT+TGG | 0.275275 | 1.3:-61489147 | MS.gene20867:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.276635 | 1.3:-61489830 | MS.gene20867:CDS |
| CATCACTTGTTGAGCCTCTA+TGG | 0.288847 | 1.3:-61489461 | MS.gene20867:CDS |
| AAGCTGAGCTGATGCTTAAA+AGG | 0.297206 | 1.3:-61489523 | MS.gene20867:CDS |
| TTTGTCTTTCACCAATTTGA+TGG | 0.304398 | 1.3:-61489795 | MS.gene20867:CDS |
| TTATGCTTTCTACCCTTAGA+AGG | 0.334013 | 1.3:-61489355 | MS.gene20867:CDS |
| CATATACAAAACCATCAAAT+TGG | 0.348712 | 1.3:+61489784 | None:intergenic |
| GGTGTAGAGGACCTTTCTTT+AGG | 0.358064 | 1.3:-61489178 | MS.gene20867:CDS |
| CTGAATTTACATACACTGTT+TGG | 0.374347 | 1.3:-61489694 | MS.gene20867:CDS |
| GAAGGCAAAGCCTTAGAAAA+AGG | 0.386252 | 1.3:-61490341 | MS.gene20867:CDS |
| TTAAACAGGTTTATAGAGTC+TGG | 0.387267 | 1.3:-61489424 | MS.gene20867:CDS |
| TACAACAGCAGCTGAGCTTC+CGG | 0.389647 | 1.3:-61490450 | MS.gene20867:CDS |
| ATTCATGACTTTCGAAAGAA+TGG | 0.402966 | 1.3:-61490302 | MS.gene20867:CDS |
| TGGTACTGGTAATGTTAAAC+AGG | 0.422414 | 1.3:-61489438 | MS.gene20867:CDS |
| CAGCTTTGAATGACATTGGT+GGG | 0.429431 | 1.3:-61489658 | MS.gene20867:CDS |
| AAGACAAAGACAAAATTGAT+TGG | 0.437683 | 1.3:-61489598 | MS.gene20867:CDS |
| AGTAATGCAAGTTTCAATAC+AGG | 0.442716 | 1.3:+61488941 | None:intergenic |
| GGCTCATAGCACCATTCAAT+TGG | 0.443758 | 1.3:+61489117 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.445036 | 1.3:-61489735 | MS.gene20867:CDS |
| TGGGGTTGAAAGGGTTTATG+AGG | 0.447556 | 1.3:-61489639 | MS.gene20867:CDS |
| ATGAGTTAAGCAAGATTCTC+AGG | 0.451952 | 1.3:-61488983 | MS.gene20867:CDS |
| CATAATAAAATAGCTATGAT+TGG | 0.458064 | 1.3:+61489373 | None:intergenic |
| ATGACATTGGTGGGGTTGAA+AGG | 0.462059 | 1.3:-61489649 | MS.gene20867:CDS |
| GCTAGTCTGTGGTAAAGGTT+TGG | 0.462155 | 1.3:+61490419 | None:intergenic |
| TTGAGCCTCTATGGTGGTAC+TGG | 0.464901 | 1.3:-61489452 | MS.gene20867:CDS |
| TGGTATTCATCAAGTATTGA+AGG | 0.467131 | 1.3:-61488901 | MS.gene20867:CDS |
| TGACATTGGTGGGGTTGAAA+GGG | 0.469956 | 1.3:-61489648 | MS.gene20867:CDS |
| AATAACATTGTTTAAGGAGT+GGG | 0.471012 | 1.3:-61489312 | MS.gene20867:CDS |
| TGGTAACTTTCGCGTTGCAC+TGG | 0.472277 | 1.3:+61489482 | None:intergenic |
| TTCAATCACTCCTTTCACTT+TGG | 0.474139 | 1.3:+61489964 | None:intergenic |
| TTACCACAGACTAGCGGTGC+TGG | 0.481394 | 1.3:-61490411 | MS.gene20867:CDS |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1.3:-61490496 | MS.gene20867:CDS |
| AGAGACTCTGAAATGAATTA+CGG | 0.484891 | 1.3:-61490521 | None:intergenic |
| GCACCGCTAGTCTGTGGTAA+AGG | 0.493852 | 1.3:+61490414 | None:intergenic |
| AGCTTGTTAATTATGATACA+AGG | 0.497708 | 1.3:-61489283 | MS.gene20867:CDS |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1.3:-61490500 | MS.gene20867:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1.3:+61490487 | None:intergenic |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1.3:-61489557 | MS.gene20867:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1.3:+61490498 | None:intergenic |
| ACTGCATCTGAATCATCTCT+TGG | 0.510797 | 1.3:-61488921 | MS.gene20867:CDS |
| CGTCTGCGACACAGTTTCTC+CGG | 0.521322 | 1.3:+61490382 | None:intergenic |
| CCTTAGAAGGCTTAATGATA+CGG | 0.522341 | 1.3:-61489342 | MS.gene20867:CDS |
| AATTATGATACAAGGTTGGC+TGG | 0.523312 | 1.3:-61489275 | MS.gene20867:CDS |
| TTGGAGATATGCCAATTGAA+TGG | 0.531282 | 1.3:-61489128 | MS.gene20867:CDS |
| TAAAGGTTTGGCTTCTTCGC+CGG | 0.534104 | 1.3:+61490431 | None:intergenic |
| AATTCCTGAATCCTAAAGAA+AGG | 0.537404 | 1.3:+61489167 | None:intergenic |
| TGTTAATTATGATACAAGGT+TGG | 0.541417 | 1.3:-61489279 | MS.gene20867:CDS |
| GTTACAAGTTCTCGTGTGCA+TGG | 0.545024 | 1.3:+61488862 | None:intergenic |
| CAGTTGGTTAATGTTATGAA+GGG | 0.560663 | 1.3:-61489734 | MS.gene20867:CDS |
| CTAGCGGTGCTGGAAAAGAC+CGG | 0.562565 | 1.3:-61490401 | MS.gene20867:CDS |
| AGAAAAGCACTCACAACTTG+TGG | 0.563214 | 1.3:+61489044 | None:intergenic |
| GCAGCTTTGAATGACATTGG+TGG | 0.569276 | 1.3:-61489659 | MS.gene20867:CDS |
| AGCTTTGAATGACATTGGTG+GGG | 0.572390 | 1.3:-61489657 | MS.gene20867:CDS |
| CTTCTAAACTGTTACTGCAA+GGG | 0.573008 | 1.3:-61489881 | MS.gene20867:CDS |
| CAGATTCCATCTCGCATTCG+AGG | 0.574452 | 1.3:-61490279 | MS.gene20867:intron |
| GCACTCACAACTTGTGGTGA+AGG | 0.577944 | 1.3:+61489050 | None:intergenic |
| TAATAACATTGTTTAAGGAG+TGG | 0.580243 | 1.3:-61489313 | MS.gene20867:CDS |
| TATCTTGTGTCCAAAGTGAA+AGG | 0.580372 | 1.3:-61489974 | MS.gene20867:CDS |
| TACGCTCAAGAAGGTCTCAC+CGG | 0.582181 | 1.3:-61489399 | MS.gene20867:CDS |
| GAAGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1.3:-61489089 | MS.gene20867:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.585829 | 1.3:-61489882 | MS.gene20867:CDS |
| AATGGTTGCAGATAATGGAA+TGG | 0.590967 | 1.3:-61490039 | MS.gene20867:intron |
| AAGGCTCTTAAGCGGTGTAG+AGG | 0.591462 | 1.3:-61489191 | MS.gene20867:CDS |
| TTTCCAGCACCGCTAGTCTG+TGG | 0.594931 | 1.3:+61490408 | None:intergenic |
| CTGAAAGTGCGGCTTCTAAG+TGG | 0.596496 | 1.3:+61489096 | None:intergenic |
| CATAGAGGCTCAACAAGTGA+TGG | 0.603610 | 1.3:+61489462 | None:intergenic |
| CGTATCATTAAGCCTTCTAA+GGG | 0.604610 | 1.3:+61489343 | None:intergenic |
| CATTACCAGTACCACCATAG+AGG | 0.605854 | 1.3:+61489447 | None:intergenic |
| TTGTAGCCGTGCAGAGTCGT+CGG | 0.608294 | 1.3:+61490468 | None:intergenic |
| TTCATAACATTAACCAACTG+AGG | 0.615039 | 1.3:+61489737 | None:intergenic |
| GTGATACCTCGAATGCGAGA+TGG | 0.615080 | 1.3:+61490273 | None:intergenic |
| AAGGTTGGCTGGTGTTGCAG+TGG | 0.615366 | 1.3:-61489264 | MS.gene20867:CDS |
| TTGAATCAGTATATAACCGA+AGG | 0.616050 | 1.3:-61490359 | MS.gene20867:CDS |
| TGTGCAGCTTTGAATGACAT+TGG | 0.616404 | 1.3:-61489662 | MS.gene20867:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1.3:-61490503 | MS.gene20867:CDS |
| GCTCAGAACATGTACACATA+CGG | 0.618377 | 1.3:-61489908 | MS.gene20867:CDS |
| AGAAGGCTTAATGATACGGA+GGG | 0.620270 | 1.3:-61489338 | MS.gene20867:CDS |
| AAATAGCTATGATTGGTCAC+CGG | 0.622313 | 1.3:+61489380 | None:intergenic |
| AGTCTGGAGTACGCTCAAGA+AGG | 0.623685 | 1.3:-61489408 | MS.gene20867:CDS |
| TGCTTACTTGAGTCAAAACA+TGG | 0.625673 | 1.3:-61489240 | MS.gene20867:CDS |
| AGCTATGTCGATCTTTGAGA+AGG | 0.634352 | 1.3:-61489210 | MS.gene20867:CDS |
| AGTTGGTTAATGTTATGAAG+GGG | 0.635275 | 1.3:-61489733 | MS.gene20867:CDS |
| CACTTGTTGAGCCTCTATGG+TGG | 0.635576 | 1.3:-61489458 | MS.gene20867:CDS |
| TCACAACTTGTGGTGAAGGA+CGG | 0.645990 | 1.3:+61489054 | None:intergenic |
| GTGTACATGTTCTGAGCACG+AGG | 0.648813 | 1.3:+61489914 | None:intergenic |
| CAAGGGACTAATGCTAGACA+AGG | 0.652550 | 1.3:-61489864 | MS.gene20867:CDS |
| TAGAAGGCTTAATGATACGG+AGG | 0.655243 | 1.3:-61489339 | MS.gene20867:CDS |
| TCTTTGAGAAGGCTCTTAAG+CGG | 0.664916 | 1.3:-61489199 | MS.gene20867:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1.3:+61489085 | None:intergenic |
| GCTTCTCCGACGACTCTGCA+CGG | 0.683165 | 1.3:-61490474 | MS.gene20867:CDS |
| TACATGTTCTGAGCACGAGG+AGG | 0.707918 | 1.3:+61489917 | None:intergenic |
| AAACCTTTACCACAGACTAG+CGG | 0.734084 | 1.3:-61490417 | MS.gene20867:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATAATAATGTTTTGAA+TGG | - | chr1.3:61489315-61489334 | MS.gene20867:CDS | 15.0% |
| !! | CATAATAAAATAGCTATGAT+TGG | + | chr1.3:61490002-61490021 | None:intergenic | 20.0% |
| !!! | AATTTGATGGTTTTGTATAT+GGG | - | chr1.3:61489590-61489609 | MS.gene20867:CDS | 20.0% |
| ! | AAAAAAATATCCCTTGTCTA+TGG | + | chr1.3:61489267-61489286 | None:intergenic | 25.0% |
| ! | AAGACAAAGACAAAATTGAT+TGG | - | chr1.3:61489774-61489793 | MS.gene20867:CDS | 25.0% |
| ! | AATAACATTGTTTAAGGAGT+GGG | - | chr1.3:61490060-61490079 | MS.gene20867:intron | 25.0% |
| ! | ATTGTTCATGCTGTATTTAT+TGG | - | chr1.3:61490225-61490244 | MS.gene20867:intron | 25.0% |
| ! | CATATACAAAACCATCAAAT+TGG | + | chr1.3:61489591-61489610 | None:intergenic | 25.0% |
| ! | GAAAATGACATAAAATGTGT+TGG | + | chr1.3:61489173-61489192 | None:intergenic | 25.0% |
| ! | TAATAACATTGTTTAAGGAG+TGG | - | chr1.3:61490059-61490078 | MS.gene20867:intron | 25.0% |
| ! | TGTTAATTATGATACAAGGT+TGG | - | chr1.3:61490093-61490112 | MS.gene20867:intron | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.3:61489542-61489561 | MS.gene20867:CDS | 25.0% |
| !! | ATTGTCTCTTTTTGATAAGA+TGG | - | chr1.3:61489532-61489551 | MS.gene20867:CDS | 25.0% |
| !!! | AGCTTGTTAATTATGATACA+AGG | - | chr1.3:61490089-61490108 | MS.gene20867:intron | 25.0% |
| !!! | ATTTGATGGTTTTGTATATG+GGG | - | chr1.3:61489591-61489610 | MS.gene20867:CDS | 25.0% |
| !!! | CAATTTGATGGTTTTGTATA+TGG | - | chr1.3:61489589-61489608 | MS.gene20867:CDS | 25.0% |
| AATTCCTGAATCCTAAAGAA+AGG | + | chr1.3:61490208-61490227 | None:intergenic | 30.0% | |
| AGTAATGCAAGTTTCAATAC+AGG | + | chr1.3:61490434-61490453 | None:intergenic | 30.0% | |
| AGTTGGTTAATGTTATGAAG+GGG | - | chr1.3:61489639-61489658 | MS.gene20867:CDS | 30.0% | |
| ATTCATGACTTTCGAAAGAA+TGG | - | chr1.3:61489070-61489089 | MS.gene20867:CDS | 30.0% | |
| CAGTTGGTTAATGTTATGAA+GGG | - | chr1.3:61489638-61489657 | MS.gene20867:CDS | 30.0% | |
| CTGAATTTACATACACTGTT+TGG | - | chr1.3:61489678-61489697 | MS.gene20867:CDS | 30.0% | |
| GAAAAAGAGACAGATCTTAA+TGG | - | chr1.3:61490361-61490380 | MS.gene20867:CDS | 30.0% | |
| GGGCATAATAACATTGTTTA+AGG | - | chr1.3:61490054-61490073 | MS.gene20867:intron | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.3:61489637-61489656 | MS.gene20867:CDS | 30.0% | |
| TTAAACAGGTTTATAGAGTC+TGG | - | chr1.3:61489948-61489967 | MS.gene20867:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.3:61489638-61489657 | None:intergenic | 30.0% | |
| TTGAATCAGTATATAACCGA+AGG | - | chr1.3:61489013-61489032 | MS.gene20867:CDS | 30.0% | |
| TTTGTCTTTCACCAATTTGA+TGG | - | chr1.3:61489577-61489596 | MS.gene20867:CDS | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1.3:61489814-61489833 | None:intergenic | 30.0% |
| ! | TGATGATTAGTTATGAAGCA+CGG | + | chr1.3:61489235-61489254 | None:intergenic | 30.0% |
| ! | TTTTGAATGGTTGCAGATAA+TGG | - | chr1.3:61489328-61489347 | MS.gene20867:CDS | 30.0% |
| !! | TGGTATTCATCAAGTATTGA+AGG | - | chr1.3:61490471-61490490 | MS.gene20867:CDS | 30.0% |
| AATATCCCTTGTCTATGGAT+TGG | + | chr1.3:61489262-61489281 | None:intergenic | 35.0% | |
| AATTATGATACAAGGTTGGC+TGG | - | chr1.3:61490097-61490116 | MS.gene20867:intron | 35.0% | |
| ACAATCCAATCCATAGACAA+GGG | - | chr1.3:61489254-61489273 | MS.gene20867:CDS | 35.0% | |
| ATGAGTTAAGCAAGATTCTC+AGG | - | chr1.3:61490389-61490408 | MS.gene20867:CDS | 35.0% | |
| CCTTAGAAGGCTTAATGATA+CGG | - | chr1.3:61490030-61490049 | MS.gene20867:CDS | 35.0% | |
| CGTATCATTAAGCCTTCTAA+GGG | + | chr1.3:61490032-61490051 | None:intergenic | 35.0% | |
| CTTCTAAACTGTTACTGCAA+GGG | - | chr1.3:61489491-61489510 | MS.gene20867:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1.3:61489815-61489834 | MS.gene20867:CDS | 35.0% | |
| TATCTTGTGTCCAAAGTGAA+AGG | - | chr1.3:61489398-61489417 | MS.gene20867:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.3:61489490-61489509 | MS.gene20867:CDS | 35.0% | |
| TGCTTACTTGAGTCAAAACA+TGG | - | chr1.3:61490132-61490151 | MS.gene20867:intron | 35.0% | |
| TTATGCTTTCTACCCTTAGA+AGG | - | chr1.3:61490017-61490036 | MS.gene20867:CDS | 35.0% | |
| TTCAATCACTCCTTTCACTT+TGG | + | chr1.3:61489411-61489430 | None:intergenic | 35.0% | |
| TTGGAGATATGCCAATTGAA+TGG | - | chr1.3:61490244-61490263 | MS.gene20867:intron | 35.0% | |
| ! | AAATAGCTATGATTGGTCAC+CGG | + | chr1.3:61489995-61490014 | None:intergenic | 35.0% |
| ! | AACCAACTGAGGAACTTTTT+GGG | + | chr1.3:61489627-61489646 | None:intergenic | 35.0% |
| ! | ATGACATAAAATGTGTTGGC+AGG | + | chr1.3:61489169-61489188 | None:intergenic | 35.0% |
| ! | CTCAAGTTCACCTTTTTCTA+AGG | + | chr1.3:61489044-61489063 | None:intergenic | 35.0% |
| ! | TAACCAACTGAGGAACTTTT+TGG | + | chr1.3:61489628-61489647 | None:intergenic | 35.0% |
| ! | TGACATAAAATGTGTTGGCA+GGG | + | chr1.3:61489168-61489187 | None:intergenic | 35.0% |
| !! | AATGGTTGCAGATAATGGAA+TGG | - | chr1.3:61489333-61489352 | MS.gene20867:CDS | 35.0% |
| !! | TGGTACTGGTAATGTTAAAC+AGG | - | chr1.3:61489934-61489953 | MS.gene20867:CDS | 35.0% |
| !!! | TTTTTCTAAGGCTTTGCCTT+CGG | + | chr1.3:61489032-61489051 | None:intergenic | 35.0% |
| AAACCTTTACCACAGACTAG+CGG | - | chr1.3:61488955-61488974 | MS.gene20867:CDS | 40.0% | |
| AAGCTGAGCTGATGCTTAAA+AGG | - | chr1.3:61489849-61489868 | MS.gene20867:CDS | 40.0% | |
| ACTGCATCTGAATCATCTCT+TGG | - | chr1.3:61490451-61490470 | MS.gene20867:CDS | 40.0% | |
| AGAAGGCTTAATGATACGGA+GGG | - | chr1.3:61490034-61490053 | MS.gene20867:intron | 40.0% | |
| CACAATCCAATCCATAGACA+AGG | - | chr1.3:61489253-61489272 | MS.gene20867:CDS | 40.0% | |
| CCGTATCATTAAGCCTTCTA+AGG | + | chr1.3:61490033-61490052 | None:intergenic | 40.0% | |
| GAAGGCAAAGCCTTAGAAAA+AGG | - | chr1.3:61489031-61489050 | MS.gene20867:CDS | 40.0% | |
| GCTCAGAACATGTACACATA+CGG | - | chr1.3:61489464-61489483 | MS.gene20867:CDS | 40.0% | |
| TAGAAGGCTTAATGATACGG+AGG | - | chr1.3:61490033-61490052 | MS.gene20867:intron | 40.0% | |
| TAGTTATGAAGCACGGAAAG+CGG | + | chr1.3:61489228-61489247 | None:intergenic | 40.0% | |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | chr1.3:61488866-61488885 | MS.gene20867:CDS | 40.0% |
| ! | ACCAACTGAGGAACTTTTTG+GGG | + | chr1.3:61489626-61489645 | None:intergenic | 40.0% |
| ! | AGCTATGTCGATCTTTGAGA+AGG | - | chr1.3:61490162-61490181 | MS.gene20867:intron | 40.0% |
| ! | GACATAAAATGTGTTGGCAG+GGG | + | chr1.3:61489167-61489186 | None:intergenic | 40.0% |
| ! | TCTTTGAGAAGGCTCTTAAG+CGG | - | chr1.3:61490173-61490192 | MS.gene20867:intron | 40.0% |
| !! | AGAAAAGCACTCACAACTTG+TGG | + | chr1.3:61490331-61490350 | None:intergenic | 40.0% |
| !! | AGCTTTGAATGACATTGGTG+GGG | - | chr1.3:61489715-61489734 | MS.gene20867:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+AGG | - | chr1.3:61490201-61490220 | MS.gene20867:intron | 40.0% |
| !! | CAGCTTTGAATGACATTGGT+GGG | - | chr1.3:61489714-61489733 | MS.gene20867:CDS | 40.0% |
| !! | TGTGCAGCTTTGAATGACAT+TGG | - | chr1.3:61489710-61489729 | MS.gene20867:CDS | 40.0% |
| !!! | ATGGTTTTGTATATGGGGCT+AGG | - | chr1.3:61489596-61489615 | MS.gene20867:CDS | 40.0% |
| ACCCCAAAAAGTTCCTCAGT+TGG | - | chr1.3:61489622-61489641 | MS.gene20867:CDS | 45.0% | |
| ATGACATTGGTGGGGTTGAA+AGG | - | chr1.3:61489723-61489742 | MS.gene20867:CDS | 45.0% | |
| CAAGGGACTAATGCTAGACA+AGG | - | chr1.3:61489508-61489527 | MS.gene20867:CDS | 45.0% | |
| CATAGAGGCTCAACAAGTGA+TGG | + | chr1.3:61489913-61489932 | None:intergenic | 45.0% | |
| CATTACCAGTACCACCATAG+AGG | + | chr1.3:61489928-61489947 | None:intergenic | 45.0% | |
| CGGACACTAACATTTCGACA+CGG | + | chr1.3:61489208-61489227 | None:intergenic | 45.0% | |
| GGCTCATAGCACCATTCAAT+TGG | + | chr1.3:61490258-61490277 | None:intergenic | 45.0% | |
| GGTGTAGAGGACCTTTCTTT+AGG | - | chr1.3:61490194-61490213 | MS.gene20867:intron | 45.0% | |
| TCACAACTTGTGGTGAAGGA+CGG | + | chr1.3:61490321-61490340 | None:intergenic | 45.0% | |
| TGACATTGGTGGGGTTGAAA+GGG | - | chr1.3:61489724-61489743 | MS.gene20867:CDS | 45.0% | |
| TGGGGTTGAAAGGGTTTATG+AGG | - | chr1.3:61489733-61489752 | MS.gene20867:CDS | 45.0% | |
| ! | CATCACTTGTTGAGCCTCTA+TGG | - | chr1.3:61489911-61489930 | MS.gene20867:CDS | 45.0% |
| ! | GCTAGTCTGTGGTAAAGGTT+TGG | + | chr1.3:61488956-61488975 | None:intergenic | 45.0% |
| ! | TAAAGGTTTGGCTTCTTCGC+CGG | + | chr1.3:61488944-61488963 | None:intergenic | 45.0% |
| !! | GCAGCTTTGAATGACATTGG+TGG | - | chr1.3:61489713-61489732 | MS.gene20867:CDS | 45.0% |
| AAGGCTCTTAAGCGGTGTAG+AGG | - | chr1.3:61490181-61490200 | MS.gene20867:intron | 50.0% | |
| CAGATTCCATCTCGCATTCG+AGG | - | chr1.3:61489093-61489112 | MS.gene20867:CDS | 50.0% | |
| GAAGCCGCACTTTCAGAAGT+CGG | - | chr1.3:61490283-61490302 | MS.gene20867:CDS | 50.0% | |
| GCACTCACAACTTGTGGTGA+AGG | + | chr1.3:61490325-61490344 | None:intergenic | 50.0% | |
| GTGATACCTCGAATGCGAGA+TGG | + | chr1.3:61489102-61489121 | None:intergenic | 50.0% | |
| TACAACAGCAGCTGAGCTTC+CGG | - | chr1.3:61488922-61488941 | MS.gene20867:CDS | 50.0% | |
| TACGCTCAAGAAGGTCTCAC+CGG | - | chr1.3:61489973-61489992 | MS.gene20867:CDS | 50.0% | |
| TGGTAACTTTCGCGTTGCAC+TGG | + | chr1.3:61489893-61489912 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | chr1.3:61488877-61488896 | None:intergenic | 50.0% | |
| TTGAGCCTCTATGGTGGTAC+TGG | - | chr1.3:61489920-61489939 | MS.gene20867:CDS | 50.0% | |
| ! | AGTCTGGAGTACGCTCAAGA+AGG | - | chr1.3:61489964-61489983 | MS.gene20867:CDS | 50.0% |
| ! | CACTTGTTGAGCCTCTATGG+TGG | - | chr1.3:61489914-61489933 | MS.gene20867:CDS | 50.0% |
| ! | CTGAAAGTGCGGCTTCTAAG+TGG | + | chr1.3:61490279-61490298 | None:intergenic | 50.0% |
| ! | GTGTACATGTTCTGAGCACG+AGG | + | chr1.3:61489461-61489480 | None:intergenic | 50.0% |
| ! | TACATGTTCTGAGCACGAGG+AGG | + | chr1.3:61489458-61489477 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1.3:61490290-61490309 | None:intergenic | 50.0% |
| CGTCTGCGACACAGTTTCTC+CGG | + | chr1.3:61488993-61489012 | None:intergenic | 55.0% | |
| TTACCACAGACTAGCGGTGC+TGG | - | chr1.3:61488961-61488980 | MS.gene20867:CDS | 55.0% | |
| TTGTAGCCGTGCAGAGTCGT+CGG | + | chr1.3:61488907-61488926 | None:intergenic | 55.0% | |
| ! | CTAGCGGTGCTGGAAAAGAC+CGG | - | chr1.3:61488971-61488990 | MS.gene20867:CDS | 55.0% |
| ! | GCACCGCTAGTCTGTGGTAA+AGG | + | chr1.3:61488961-61488980 | None:intergenic | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | chr1.3:61488876-61488895 | MS.gene20867:CDS | 55.0% |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | chr1.3:61488869-61488888 | MS.gene20867:CDS | 55.0% |
| ! | TTTCCAGCACCGCTAGTCTG+TGG | + | chr1.3:61488967-61488986 | None:intergenic | 55.0% |
| !! | AAGGTTGGCTGGTGTTGCAG+TGG | - | chr1.3:61490108-61490127 | MS.gene20867:intron | 55.0% |
| GCTTCTCCGACGACTCTGCA+CGG | - | chr1.3:61488898-61488917 | MS.gene20867:CDS | 60.0% | |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | chr1.3:61488888-61488907 | None:intergenic | 65.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | chr1.3:61488872-61488891 | MS.gene20867:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61488863 | 61490531 | 61488863 | ID=MS.gene20867 |
| chr1.3 | mRNA | 61488863 | 61490531 | 61488863 | ID=MS.gene20867.t1;Parent=MS.gene20867 |
| chr1.3 | exon | 61490280 | 61490531 | 61490280 | ID=MS.gene20867.t1.exon1;Parent=MS.gene20867.t1 |
| chr1.3 | CDS | 61490280 | 61490531 | 61490280 | ID=cds.MS.gene20867.t1;Parent=MS.gene20867.t1 |
| chr1.3 | exon | 61488863 | 61490050 | 61488863 | ID=MS.gene20867.t1.exon2;Parent=MS.gene20867.t1 |
| chr1.3 | CDS | 61488863 | 61490050 | 61488863 | ID=cds.MS.gene20867.t1;Parent=MS.gene20867.t1 |
| Gene Sequence |
| Protein sequence |
