Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20868.t1 | RHN81020.1 | 97.3 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 4.40E-268 | 933.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20868.t1 | Q9FZ24 | 47.2 | 451 | 228 | 5 | 29 | 469 | 69 | 519 | 4.1e-113 | 409.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20868.t1 | G7ICW4 | 97.3 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 3.2e-268 | 933.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068116 | MS.gene20868 | PPI |
| MS.gene20868 | MS.gene008871 | PPI |
| MS.gene20868 | MS.gene69362 | PPI |
| MS.gene20868 | MS.gene067932 | PPI |
| MS.gene067938 | MS.gene20868 | PPI |
| MS.gene20868 | MS.gene008863 | PPI |
| MS.gene20868 | MS.gene056432 | PPI |
| MS.gene014383 | MS.gene20868 | PPI |
| MS.gene068115 | MS.gene20868 | PPI |
| MS.gene20868 | MS.gene068108 | PPI |
| MS.gene008872 | MS.gene20868 | PPI |
| MS.gene064795 | MS.gene20868 | PPI |
| MS.gene20868 | MS.gene52807 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20868.t1 | MTR_1g086820 | 97.292 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 0.0 | 972 |
| MS.gene20868.t1 | MTR_8g069570 | 38.377 | 456 | 265 | 7 | 40 | 480 | 29 | 483 | 2.12e-93 | 292 |
| MS.gene20868.t1 | MTR_2g013450 | 30.176 | 454 | 303 | 8 | 29 | 471 | 26 | 476 | 2.27e-62 | 211 |
| MS.gene20868.t1 | MTR_8g007375 | 32.884 | 371 | 246 | 3 | 93 | 460 | 7 | 377 | 1.80e-58 | 198 |
| MS.gene20868.t1 | MTR_1g072300 | 30.839 | 441 | 289 | 9 | 20 | 450 | 25 | 459 | 2.66e-56 | 195 |
| MS.gene20868.t1 | MTR_2g047855 | 30.189 | 424 | 280 | 8 | 13 | 430 | 19 | 432 | 4.09e-56 | 194 |
| MS.gene20868.t1 | MTR_8g465890 | 30.425 | 424 | 281 | 6 | 14 | 431 | 16 | 431 | 3.09e-55 | 192 |
| MS.gene20868.t1 | MTR_3g099753 | 29.252 | 441 | 295 | 8 | 20 | 450 | 26 | 459 | 9.16e-51 | 180 |
| MS.gene20868.t1 | MTR_3g099753 | 29.252 | 441 | 295 | 8 | 20 | 450 | 50 | 483 | 1.65e-50 | 180 |
| MS.gene20868.t1 | MTR_8g059115 | 28.696 | 345 | 244 | 2 | 100 | 442 | 13 | 357 | 4.26e-47 | 168 |
| MS.gene20868.t1 | MTR_2g090290 | 27.381 | 420 | 255 | 9 | 51 | 441 | 52 | 450 | 7.19e-42 | 155 |
| MS.gene20868.t1 | MTR_1g022400 | 30.241 | 291 | 199 | 4 | 46 | 332 | 69 | 359 | 2.10e-41 | 152 |
| MS.gene20868.t1 | MTR_8g031520 | 37.129 | 202 | 123 | 3 | 27 | 224 | 99 | 300 | 2.72e-31 | 122 |
| MS.gene20868.t1 | MTR_7g089770 | 23.810 | 399 | 286 | 12 | 38 | 430 | 163 | 549 | 2.19e-24 | 107 |
| MS.gene20868.t1 | MTR_1g050750 | 22.931 | 423 | 306 | 12 | 29 | 445 | 90 | 498 | 2.76e-22 | 100 |
| MS.gene20868.t1 | MTR_2g096880 | 23.197 | 319 | 241 | 4 | 17 | 333 | 30 | 346 | 8.27e-18 | 86.3 |
| MS.gene20868.t1 | MTR_8g098755 | 22.884 | 319 | 234 | 7 | 82 | 392 | 334 | 648 | 2.25e-12 | 69.7 |
| MS.gene20868.t1 | MTR_7g017530 | 29.213 | 178 | 122 | 3 | 130 | 304 | 283 | 459 | 1.57e-11 | 67.4 |
| MS.gene20868.t1 | MTR_8g080940 | 22.812 | 320 | 223 | 8 | 53 | 359 | 520 | 828 | 6.04e-11 | 65.5 |
| MS.gene20868.t1 | MTR_8g080940 | 22.812 | 320 | 223 | 8 | 53 | 359 | 722 | 1030 | 9.70e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20868.t1 | AT1G02370 | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.17e-145 | 427 |
| MS.gene20868.t1 | AT4G01990 | 43.542 | 480 | 249 | 8 | 11 | 469 | 6 | 484 | 2.41e-128 | 382 |
| MS.gene20868.t1 | AT1G60770 | 37.069 | 464 | 271 | 10 | 33 | 480 | 25 | 483 | 1.10e-89 | 282 |
| MS.gene20868.t1 | AT1G02150 | 34.259 | 432 | 279 | 4 | 33 | 459 | 69 | 500 | 1.29e-76 | 249 |
| MS.gene20868.t1 | AT4G21705 | 31.818 | 418 | 281 | 4 | 29 | 442 | 23 | 440 | 1.42e-68 | 227 |
| MS.gene20868.t1 | AT2G20710 | 29.540 | 413 | 284 | 5 | 32 | 441 | 39 | 447 | 1.12e-57 | 198 |
| MS.gene20868.t1 | AT4G02820 | 29.895 | 475 | 305 | 9 | 8 | 470 | 41 | 499 | 4.23e-55 | 192 |
| MS.gene20868.t1 | AT5G27460 | 29.070 | 430 | 290 | 6 | 12 | 431 | 21 | 445 | 5.67e-53 | 186 |
| MS.gene20868.t1 | AT5G09450 | 31.056 | 322 | 216 | 5 | 25 | 340 | 49 | 370 | 2.60e-48 | 171 |
| MS.gene20868.t1 | AT2G20710 | 29.942 | 344 | 235 | 4 | 100 | 441 | 13 | 352 | 5.56e-47 | 167 |
| MS.gene20868.t1 | AT1G28020 | 28.267 | 329 | 231 | 5 | 36 | 359 | 41 | 369 | 3.93e-32 | 129 |
| MS.gene20868.t1 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.25e-24 | 105 |
| MS.gene20868.t1 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.25e-24 | 105 |
| MS.gene20868.t1 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.25e-24 | 105 |
| MS.gene20868.t1 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.25e-24 | 105 |
| MS.gene20868.t1 | AT1G80270 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.25e-24 | 105 |
| MS.gene20868.t1 | AT1G15480 | 25.205 | 365 | 261 | 9 | 43 | 402 | 138 | 495 | 3.93e-23 | 103 |
| MS.gene20868.t1 | AT3G15590 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.30e-22 | 101 |
| MS.gene20868.t1 | AT3G15590 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.30e-22 | 101 |
| MS.gene20868.t1 | AT1G07590 | 24.633 | 341 | 251 | 5 | 27 | 365 | 64 | 400 | 2.39e-19 | 91.3 |
| MS.gene20868.t1 | AT3G11380 | 26.780 | 295 | 180 | 6 | 66 | 355 | 78 | 341 | 8.38e-18 | 86.7 |
| MS.gene20868.t1 | AT3G11380 | 34.722 | 144 | 90 | 4 | 57 | 196 | 372 | 515 | 4.56e-12 | 68.6 |
| MS.gene20868.t1 | AT1G28000 | 24.567 | 289 | 210 | 6 | 13 | 293 | 13 | 301 | 1.29e-15 | 79.0 |
| MS.gene20868.t1 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.38e-12 | 70.1 |
| MS.gene20868.t1 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.38e-12 | 70.1 |
| MS.gene20868.t1 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.38e-12 | 70.1 |
| MS.gene20868.t1 | AT5G21222 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.38e-12 | 70.1 |
| MS.gene20868.t1 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.32e-11 | 65.5 |
| MS.gene20868.t1 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.32e-11 | 65.5 |
| MS.gene20868.t1 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.32e-11 | 65.5 |
| MS.gene20868.t1 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.32e-11 | 65.5 |
| MS.gene20868.t1 | AT5G02860 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.32e-11 | 65.5 |
Find 117 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGGTTTGCCTTCTTATT+TGG | 0.179522 | 1.3:+61485686 | None:intergenic |
| GGGCATAATAAAATTGTTTA+AGG | 0.218164 | 1.3:-61483954 | MS.gene20868:CDS |
| AATTACGGCCGTTTGATTTC+CGG | 0.228375 | 1.3:-61485761 | MS.gene20868:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.262779 | 1.3:-61484460 | MS.gene20868:CDS |
| ATGAGTTAAGCAAGATTCTT+AGG | 0.291614 | 1.3:-61483619 | MS.gene20868:CDS |
| GGCATGTTAGTTATGATTCT+AGG | 0.296691 | 1.3:-61483919 | MS.gene20868:CDS |
| CCATATCATTAAGCCTTCTA+AGG | 0.308417 | 1.3:+61483978 | None:intergenic |
| TTATGCTTTCTAACCTTAGA+AGG | 0.314226 | 1.3:-61483991 | MS.gene20868:CDS |
| CTTTCCCTTCGATTATATAC+TGG | 0.317101 | 1.3:+61485609 | None:intergenic |
| GCTGCAGAGGACCTTTCTTT+AGG | 0.319713 | 1.3:-61483814 | MS.gene20868:CDS |
| AGGACCTTTCTTTAGGATTC+GGG | 0.341722 | 1.3:-61483807 | MS.gene20868:CDS |
| GAGGACCTTTCTTTAGGATT+CGG | 0.351526 | 1.3:-61483808 | MS.gene20868:CDS |
| TAGGATTCGGGAAATGTTCA+TGG | 0.370256 | 1.3:-61483795 | MS.gene20868:CDS |
| CCTTAGAAGGCTTAATGATA+TGG | 0.371817 | 1.3:-61483978 | MS.gene20868:CDS |
| TTCTTGCTGAGCCTTTATGC+TGG | 0.387794 | 1.3:-61484094 | MS.gene20868:CDS |
| CATATACATAGACATCAAAT+TGG | 0.389303 | 1.3:+61484414 | None:intergenic |
| TTTATTGGAGAAAGGTCAAT+TGG | 0.391224 | 1.3:-61483768 | MS.gene20868:CDS |
| GGAAGCTGTGTCGGTCTTTG+AGG | 0.399258 | 1.3:-61483849 | MS.gene20868:CDS |
| GTTGGTTGGTGTTGCAGTGC+AGG | 0.407651 | 1.3:-61483897 | MS.gene20868:CDS |
| GTTACAAATTCTCGTGGGCT+TGG | 0.417988 | 1.3:+61483498 | None:intergenic |
| GAAGAAGAAACAGATCTTGA+TGG | 0.427741 | 1.3:-61483647 | MS.gene20868:CDS |
| AATAAAATTGTTTAAGGAGT+GGG | 0.433563 | 1.3:-61483948 | MS.gene20868:CDS |
| TGTTTAAGGAGTGGGAATCT+AGG | 0.433657 | 1.3:-61483940 | MS.gene20868:CDS |
| TGGTGCTATGAGCCACTTAG+AGG | 0.441022 | 1.3:-61483744 | MS.gene20868:CDS |
| CATTACCAGTCCCAGCATAA+AGG | 0.447077 | 1.3:+61484083 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.448455 | 1.3:-61484365 | MS.gene20868:CDS |
| TCTTGCTGAGCCTTTATGCT+GGG | 0.452519 | 1.3:-61484093 | MS.gene20868:CDS |
| GATAGCTCCGATTGGTCACC+GGG | 0.462784 | 1.3:+61484017 | None:intergenic |
| CATAAAGGCTCAGCAAGAAA+TGG | 0.465952 | 1.3:+61484098 | None:intergenic |
| TTAAAGAGGTTTATAGAGTG+TGG | 0.469721 | 1.3:-61484060 | MS.gene20868:CDS |
| ATTTGATGTCTATGTATATG+AGG | 0.470560 | 1.3:-61484411 | MS.gene20868:CDS |
| CGTCTGCGACACGGTTCCTC+CGG | 0.470565 | 1.3:+61485637 | None:intergenic |
| TTTCTAGGTCGGCTAGTCTT+CGG | 0.471475 | 1.3:+61485663 | None:intergenic |
| TGGTATTCATACGGTATTGA+AGG | 0.471698 | 1.3:-61483537 | MS.gene20868:CDS |
| GCACTTACAGCTTGTGGTGA+AGG | 0.473435 | 1.3:+61483686 | None:intergenic |
| TATGTGTACTTGTTCTTAGC+AGG | 0.476882 | 1.3:+61484541 | None:intergenic |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1.3:-61485751 | MS.gene20868:CDS |
| AGAGACTCTGAGATGAATTA+CGG | 0.482119 | 1.3:-61485776 | None:intergenic |
| TAAAGAGGTTTATAGAGTGT+GGG | 0.486756 | 1.3:-61484059 | MS.gene20868:CDS |
| CTGAGCCTTTATGCTGGGAC+TGG | 0.488058 | 1.3:-61484088 | MS.gene20868:CDS |
| ATGAATACCAGGAGATGATT+CGG | 0.489377 | 1.3:+61483550 | None:intergenic |
| AGTTATGATTCTAGGTTGGT+TGG | 0.491947 | 1.3:-61483911 | MS.gene20868:CDS |
| ATAATCGAAGGGAAAGCCTT+AGG | 0.492451 | 1.3:-61485602 | MS.gene20868:CDS |
| TTCAACCACTCCTTTCACTT+TGG | 0.493231 | 1.3:+61484594 | None:intergenic |
| TACGATACTTTCGAAGCTCC+TGG | 0.493561 | 1.3:+61485555 | None:intergenic |
| CACCGGGGTGATCTTCTTGA+GGG | 0.494822 | 1.3:+61484033 | None:intergenic |
| TGTGCTGCTTTGAATGACCT+TGG | 0.495240 | 1.3:-61484292 | MS.gene20868:CDS |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1.3:-61485755 | MS.gene20868:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1.3:+61485742 | None:intergenic |
| AGATCACCCCGGTGACCAAT+CGG | 0.504230 | 1.3:-61484024 | MS.gene20868:CDS |
| TGAACTCGAGAGATGCGTCC+AGG | 0.504375 | 1.3:-61485573 | MS.gene20868:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1.3:-61484193 | MS.gene20868:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1.3:+61485753 | None:intergenic |
| GGTCGGCTAGTCTTCGGTAA+AGG | 0.515798 | 1.3:+61485669 | None:intergenic |
| TGAGGTTGAACGTGTTTATG+AGG | 0.516026 | 1.3:-61484269 | MS.gene20868:CDS |
| TGTTAGTTATGATTCTAGGT+TGG | 0.519722 | 1.3:-61483915 | MS.gene20868:CDS |
| ACGACTATGCACGGCTGCGA+CGG | 0.522141 | 1.3:-61485720 | MS.gene20868:CDS |
| AAGATGAAGACAAAATTGAC+TGG | 0.525053 | 1.3:-61484234 | MS.gene20868:CDS |
| ACTATGCACGGCTGCGACGG+CGG | 0.530582 | 1.3:-61485717 | MS.gene20868:CDS |
| TACTTGTTCTTAGCAGGAGG+AGG | 0.531968 | 1.3:+61484547 | None:intergenic |
| TGGGACTGGTAATGTTAAAG+AGG | 0.532622 | 1.3:-61484074 | MS.gene20868:CDS |
| AGATAGCTCCGATTGGTCAC+CGG | 0.533726 | 1.3:+61484016 | None:intergenic |
| ATTTCCCGAATCCTAAAGAA+AGG | 0.537745 | 1.3:+61483803 | None:intergenic |
| TGCTTTGAATGACCTTGGTG+AGG | 0.538207 | 1.3:-61484287 | MS.gene20868:CDS |
| TCACCGGGGTGATCTTCTTG+AGG | 0.539174 | 1.3:+61484032 | None:intergenic |
| TTGGAGAAAGGTCAATTGGA+TGG | 0.539563 | 1.3:-61483764 | MS.gene20868:CDS |
| AGAAAAGCACTTACAGCTTG+TGG | 0.542366 | 1.3:+61483680 | None:intergenic |
| GGCTGAGCTTCCAAATAAGA+AGG | 0.546791 | 1.3:-61485696 | MS.gene20868:CDS |
| AAAGAGGTTTATAGAGTGTG+GGG | 0.547043 | 1.3:-61484058 | MS.gene20868:CDS |
| GAAGCTCTCAAGAGCTGCAG+AGG | 0.547848 | 1.3:-61483827 | MS.gene20868:CDS |
| GATCTTGTGTCCAAAGTGAA+AGG | 0.549809 | 1.3:-61484604 | MS.gene20868:CDS |
| ATCATCTCCTGGTATTCATA+CGG | 0.551917 | 1.3:-61483546 | MS.gene20868:CDS |
| ACTGCATCCGAATCATCTCC+TGG | 0.552993 | 1.3:-61483557 | MS.gene20868:CDS |
| AGAAATGGTAAGTTTCGCGT+TGG | 0.553517 | 1.3:+61484113 | None:intergenic |
| TTACAGCTTGTGGTGAAGGT+TGG | 0.556374 | 1.3:+61483690 | None:intergenic |
| TAATAAAATTGTTTAAGGAG+TGG | 0.559489 | 1.3:-61483949 | MS.gene20868:CDS |
| TCCCAAGTTACAAATTCTCG+TGG | 0.560694 | 1.3:+61483492 | None:intergenic |
| TTGAACCAGTATATAATCGA+AGG | 0.561352 | 1.3:-61485614 | MS.gene20868:CDS |
| ATTGGTTGCAGATAATGGAA+TGG | 0.561950 | 1.3:-61484678 | MS.gene20868:intron |
| AGCTGAGTTGATGCTTAAGA+AGG | 0.568467 | 1.3:-61484158 | MS.gene20868:CDS |
| TGGTAAGTTTCGCGTTGGCG+CGG | 0.569478 | 1.3:+61484118 | None:intergenic |
| TTCAATACCGTATGAATACC+AGG | 0.570993 | 1.3:+61483539 | None:intergenic |
| CTGAAAGTGCGGCCTCTAAG+TGG | 0.571070 | 1.3:+61483732 | None:intergenic |
| ATGTCTATGTATATGAGGCT+AGG | 0.571867 | 1.3:-61484406 | MS.gene20868:CDS |
| TAGATTCCATCATGCATTCG+AGG | 0.573744 | 1.3:-61485534 | MS.gene20868:intron |
| CATGGACAAGGAAGCTGTGT+CGG | 0.574022 | 1.3:-61483858 | MS.gene20868:CDS |
| CTGGTTCAACGTCTGCGACA+CGG | 0.577943 | 1.3:+61485628 | None:intergenic |
| ACCGTCGAAAGTTCCTCAGT+TGG | 0.578763 | 1.3:-61484380 | MS.gene20868:CDS |
| TAGAAGGCTTAATGATATGG+AGG | 0.581977 | 1.3:-61483975 | MS.gene20868:CDS |
| GAGGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1.3:-61483725 | MS.gene20868:CDS |
| ACCAACTGAGGAACTTTCGA+CGG | 0.585028 | 1.3:+61484379 | None:intergenic |
| CATAATAAGATAGCTCCGAT+TGG | 0.585163 | 1.3:+61484009 | None:intergenic |
| GCGATACCTCGAATGCATGA+TGG | 0.585983 | 1.3:+61485528 | None:intergenic |
| GTGTACTTGTTCTTAGCAGG+AGG | 0.589015 | 1.3:+61484544 | None:intergenic |
| TGGTTAATGTTATGAAGGAG+AGG | 0.593769 | 1.3:-61484360 | MS.gene20868:CDS |
| TTCATAACATTAACCAACTG+AGG | 0.600464 | 1.3:+61484367 | None:intergenic |
| AGAAGGCTTAATGATATGGA+GGG | 0.604451 | 1.3:-61483974 | MS.gene20868:CDS |
| GCTAAGAACAAGTACACATA+CGG | 0.606065 | 1.3:-61484538 | MS.gene20868:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.614146 | 1.3:-61484512 | MS.gene20868:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1.3:-61485758 | MS.gene20868:CDS |
| GGCTTACTTGAGTCAAAACA+TGG | 0.616784 | 1.3:-61483876 | MS.gene20868:CDS |
| CCCAAGTTACAAATTCTCGT+GGG | 0.622015 | 1.3:+61483493 | None:intergenic |
| CTTGAGTCAAAACATGGACA+AGG | 0.623542 | 1.3:-61483870 | MS.gene20868:CDS |
| AAGAGGTTTATAGAGTGTGG+GGG | 0.627275 | 1.3:-61484057 | MS.gene20868:CDS |
| TGAACCAGTATATAATCGAA+GGG | 0.630767 | 1.3:-61485613 | MS.gene20868:CDS |
| TCGCAGCCGTGCATAGTCGT+CGG | 0.630947 | 1.3:+61485723 | None:intergenic |
| CTAGCCGACCTAGAAAAGAC+CGG | 0.635101 | 1.3:-61485656 | MS.gene20868:CDS |
| TGAGTTGATGCTTAAGAAGG+TGG | 0.644162 | 1.3:-61484155 | MS.gene20868:CDS |
| TAATGGAATGGATGATGATG+AGG | 0.652324 | 1.3:-61484666 | MS.gene20868:CDS |
| CAAGGAACTAATGCTAGACA+AGG | 0.652550 | 1.3:-61484494 | MS.gene20868:CDS |
| GACCCTCAAGAAGATCACCC+CGG | 0.654594 | 1.3:-61484035 | MS.gene20868:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1.3:+61483721 | None:intergenic |
| GCTTCTCCGACGACTATGCA+CGG | 0.690136 | 1.3:-61485729 | MS.gene20868:CDS |
| GCCGACCTAGAAAAGACCGG+AGG | 0.743237 | 1.3:-61485653 | MS.gene20868:CDS |
| TGTGTCCAAAGTGAAAGGAG+TGG | 0.764655 | 1.3:-61484599 | MS.gene20868:CDS |
| AAACACGTTCAACCTCACCA+AGG | 0.766259 | 1.3:+61484275 | None:intergenic |
| ATAGCTCCGATTGGTCACCG+GGG | 0.806286 | 1.3:+61484018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGATGTTTTGAT+TGG | - | chr1.3:61484567-61484586 | MS.gene20868:CDS | 15.0% |
| !! | AATAAAATTGTTTAAGGAGT+GGG | - | chr1.3:61485315-61485334 | MS.gene20868:intron | 20.0% |
| !! | AGATTTAAAGATTAACAAGT+TGG | - | chr1.3:61484415-61484434 | MS.gene20868:CDS | 20.0% |
| !! | TAATAAAATTGTTTAAGGAG+TGG | - | chr1.3:61485314-61485333 | MS.gene20868:intron | 20.0% |
| !! | TCAACATGAATCAAAATTTA+GGG | + | chr1.3:61483783-61483802 | None:intergenic | 20.0% |
| !! | TTGTTAATAAATGAATCAAC+TGG | - | chr1.3:61484034-61484053 | MS.gene20868:CDS | 20.0% |
| ! | AAAATTAGTTAGAGTCGTTT+AGG | + | chr1.3:61483880-61483899 | None:intergenic | 25.0% |
| ! | ACTAATTATGTTCTGTGTAA+TGG | - | chr1.3:61483998-61484017 | MS.gene20868:CDS | 25.0% |
| ! | ATTTGATGTCTATGTATATG+AGG | - | chr1.3:61484852-61484871 | MS.gene20868:intron | 25.0% |
| ! | CATATACATAGACATCAAAT+TGG | + | chr1.3:61484852-61484871 | None:intergenic | 25.0% |
| ! | CTCAACATGAATCAAAATTT+AGG | + | chr1.3:61483784-61483803 | None:intergenic | 25.0% |
| ! | GGGCATAATAAAATTGTTTA+AGG | - | chr1.3:61485309-61485328 | MS.gene20868:intron | 25.0% |
| ! | TAGTATATGATAGAACACTA+TGG | - | chr1.3:61484447-61484466 | MS.gene20868:CDS | 25.0% |
| ! | TTATATAGTAGTCACAAGAT+CGG | - | chr1.3:61484099-61484118 | MS.gene20868:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.3:61484803-61484822 | MS.gene20868:intron | 25.0% |
| !! | AAAGATTAACAAGTTGGATA+GGG | - | chr1.3:61484421-61484440 | MS.gene20868:CDS | 25.0% |
| !! | AAATTTAGGGTGGAAAAAAT+TGG | + | chr1.3:61483770-61483789 | None:intergenic | 25.0% |
| !! | CTGAATTTACATACATTTTG+TGG | - | chr1.3:61484939-61484958 | MS.gene20868:intron | 25.0% |
| !! | GAGGCAAATTAATTTTTCAT+GGG | - | chr1.3:61484616-61484635 | MS.gene20868:CDS | 25.0% |
| !! | TAAAGATTAACAAGTTGGAT+AGG | - | chr1.3:61484420-61484439 | MS.gene20868:CDS | 25.0% |
| !! | TGAGGCAAATTAATTTTTCA+TGG | - | chr1.3:61484615-61484634 | MS.gene20868:CDS | 25.0% |
| !!! | AATGTTCATGGTGTTTTTAT+TGG | - | chr1.3:61485480-61485499 | MS.gene20868:intron | 25.0% |
| !!! | AATTAGTTTTACCTTGTCTA+TGG | + | chr1.3:61483985-61484004 | None:intergenic | 25.0% |
| !!! | AGTAATGCAAGTTTTAATAG+AGG | + | chr1.3:61485689-61485708 | None:intergenic | 25.0% |
| !!! | ATTGTCTCATTTTGATAAGA+TGG | - | chr1.3:61484793-61484812 | MS.gene20868:intron | 25.0% |
| !!! | TTTACCATCTTTTTTACGAT+AGG | + | chr1.3:61484257-61484276 | None:intergenic | 25.0% |
| AAGATGAAGACAAAATTGAC+TGG | - | chr1.3:61485029-61485048 | MS.gene20868:intron | 30.0% | |
| ACATGAATCAAAATTTAGGG+TGG | + | chr1.3:61483780-61483799 | None:intergenic | 30.0% | |
| ATGACAATATTAGAGAGAGT+TGG | - | chr1.3:61484224-61484243 | MS.gene20868:CDS | 30.0% | |
| ATGAGTTAAGCAAGATTCTT+AGG | - | chr1.3:61485644-61485663 | MS.gene20868:CDS | 30.0% | |
| TAAAGAGGTTTATAGAGTGT+GGG | - | chr1.3:61485204-61485223 | MS.gene20868:intron | 30.0% | |
| TAAAGGTTTGCCTTCTTATT+TGG | + | chr1.3:61483580-61483599 | None:intergenic | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.3:61484898-61484917 | MS.gene20868:intron | 30.0% | |
| TGAACCAGTATATAATCGAA+GGG | - | chr1.3:61483650-61483669 | MS.gene20868:CDS | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | - | chr1.3:61484225-61484244 | MS.gene20868:CDS | 30.0% | |
| TGATGATAAACTATGAAGCA+TGG | + | chr1.3:61483958-61483977 | None:intergenic | 30.0% | |
| TGTTAGTTATGATTCTAGGT+TGG | - | chr1.3:61485348-61485367 | MS.gene20868:intron | 30.0% | |
| TTAAAGAGGTTTATAGAGTG+TGG | - | chr1.3:61485203-61485222 | MS.gene20868:intron | 30.0% | |
| TTATGCTTTCTAACCTTAGA+AGG | - | chr1.3:61485272-61485291 | MS.gene20868:intron | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.3:61484899-61484918 | None:intergenic | 30.0% | |
| TTGAACCAGTATATAATCGA+AGG | - | chr1.3:61483649-61483668 | MS.gene20868:CDS | 30.0% | |
| TTTATTGGAGAAAGGTCAAT+TGG | - | chr1.3:61485495-61485514 | MS.gene20868:intron | 30.0% | |
| ! | ACATACATTTTGTGGATGAA+TGG | - | chr1.3:61484947-61484966 | MS.gene20868:intron | 30.0% |
| ! | AGATGGTAAAAGTTTGACTT+AGG | - | chr1.3:61484267-61484286 | MS.gene20868:CDS | 30.0% |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1.3:61485069-61485088 | None:intergenic | 30.0% |
| !! | ATGGTGTTTTTATTGGAGAA+AGG | - | chr1.3:61485487-61485506 | MS.gene20868:intron | 30.0% |
| !! | TTTTGATTGGTTGCAGATAA+TGG | - | chr1.3:61484580-61484599 | MS.gene20868:CDS | 30.0% |
| !!! | CGCTTATTTTATTCTCATGT+TGG | + | chr1.3:61484151-61484170 | None:intergenic | 30.0% |
| AAAGAGGTTTATAGAGTGTG+GGG | - | chr1.3:61485205-61485224 | MS.gene20868:intron | 35.0% | |
| AGAAGGCTTAATGATATGGA+GGG | - | chr1.3:61485289-61485308 | MS.gene20868:intron | 35.0% | |
| AGCACCTATCGTAAAAAAGA+TGG | - | chr1.3:61484250-61484269 | MS.gene20868:CDS | 35.0% | |
| ATCATCACAATCCATAGACA+AGG | - | chr1.3:61483971-61483990 | MS.gene20868:CDS | 35.0% | |
| ATCATCTCCTGGTATTCATA+CGG | - | chr1.3:61485717-61485736 | MS.gene20868:CDS | 35.0% | |
| ATGAATACCAGGAGATGATT+CGG | + | chr1.3:61485716-61485735 | None:intergenic | 35.0% | |
| ATGTCTATGTATATGAGGCT+AGG | - | chr1.3:61484857-61484876 | MS.gene20868:intron | 35.0% | |
| ATTTCCCGAATCCTAAAGAA+AGG | + | chr1.3:61485463-61485482 | None:intergenic | 35.0% | |
| CATAATAAGATAGCTCCGAT+TGG | + | chr1.3:61485257-61485276 | None:intergenic | 35.0% | |
| CCATATCATTAAGCCTTCTA+AGG | + | chr1.3:61485288-61485307 | None:intergenic | 35.0% | |
| CCTTAGAAGGCTTAATGATA+TGG | - | chr1.3:61485285-61485304 | MS.gene20868:intron | 35.0% | |
| CTTTCCCTTCGATTATATAC+TGG | + | chr1.3:61483657-61483676 | None:intergenic | 35.0% | |
| GAAGAAGAAACAGATCTTGA+TGG | - | chr1.3:61485616-61485635 | MS.gene20868:CDS | 35.0% | |
| GCTAAGAACAAGTACACATA+CGG | - | chr1.3:61484725-61484744 | MS.gene20868:intron | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1.3:61485070-61485089 | MS.gene20868:intron | 35.0% | |
| GGCATGTTAGTTATGATTCT+AGG | - | chr1.3:61485344-61485363 | MS.gene20868:intron | 35.0% | |
| TAGAAGGCTTAATGATATGG+AGG | - | chr1.3:61485288-61485307 | MS.gene20868:intron | 35.0% | |
| TATGTGTACTTGTTCTTAGC+AGG | + | chr1.3:61484725-61484744 | None:intergenic | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.3:61484751-61484770 | MS.gene20868:intron | 35.0% | |
| TGGTTAATGTTATGAAGGAG+AGG | - | chr1.3:61484903-61484922 | MS.gene20868:intron | 35.0% | |
| TTCAATACCGTATGAATACC+AGG | + | chr1.3:61485727-61485746 | None:intergenic | 35.0% | |
| ! | AAATGAATCAACTGGCTTAG+TGG | - | chr1.3:61484042-61484061 | MS.gene20868:CDS | 35.0% |
| ! | CAAGTCTTATCCCACTAATT+GGG | + | chr1.3:61484497-61484516 | None:intergenic | 35.0% |
| ! | GACCTGTAGATTTTGTAGTA+CGG | - | chr1.3:61484312-61484331 | MS.gene20868:CDS | 35.0% |
| ! | TAATGGAATGGATGATGATG+AGG | - | chr1.3:61484597-61484616 | MS.gene20868:CDS | 35.0% |
| ! | TGGTAAAAGTTTGACTTAGG+TGG | - | chr1.3:61484270-61484289 | MS.gene20868:CDS | 35.0% |
| ! | TGGTATTCATACGGTATTGA+AGG | - | chr1.3:61485726-61485745 | MS.gene20868:CDS | 35.0% |
| !! | AGTTATGATTCTAGGTTGGT+TGG | - | chr1.3:61485352-61485371 | MS.gene20868:intron | 35.0% |
| !! | ATTGGTTGCAGATAATGGAA+TGG | - | chr1.3:61484585-61484604 | MS.gene20868:CDS | 35.0% |
| AAGAGGTTTATAGAGTGTGG+GGG | - | chr1.3:61485206-61485225 | MS.gene20868:intron | 40.0% | |
| ACAAGATCGGTGATGTTGTA+TGG | - | chr1.3:61484112-61484131 | MS.gene20868:CDS | 40.0% | |
| AGAAATGGTAAGTTTCGCGT+TGG | + | chr1.3:61485153-61485172 | None:intergenic | 40.0% | |
| ATAATCGAAGGGAAAGCCTT+AGG | - | chr1.3:61483661-61483680 | MS.gene20868:CDS | 40.0% | |
| CAAGGAACTAATGCTAGACA+AGG | - | chr1.3:61484769-61484788 | MS.gene20868:intron | 40.0% | |
| CATAAAGGCTCAGCAAGAAA+TGG | + | chr1.3:61485168-61485187 | None:intergenic | 40.0% | |
| CCAATTAGTGGGATAAGACT+TGG | - | chr1.3:61484495-61484514 | MS.gene20868:CDS | 40.0% | |
| CTCCGTACTACAAAATCTAC+AGG | + | chr1.3:61484317-61484336 | None:intergenic | 40.0% | |
| CTTATCCCACTAATTGGGAT+CGG | + | chr1.3:61484492-61484511 | None:intergenic | 40.0% | |
| CTTGAGTCAAAACATGGACA+AGG | - | chr1.3:61485393-61485412 | MS.gene20868:intron | 40.0% | |
| GATCTTGTGTCCAAAGTGAA+AGG | - | chr1.3:61484659-61484678 | MS.gene20868:CDS | 40.0% | |
| GGCTTACTTGAGTCAAAACA+TGG | - | chr1.3:61485387-61485406 | MS.gene20868:intron | 40.0% | |
| TAGATTCCATCATGCATTCG+AGG | - | chr1.3:61483729-61483748 | MS.gene20868:CDS | 40.0% | |
| TAGGATTCGGGAAATGTTCA+TGG | - | chr1.3:61485468-61485487 | MS.gene20868:intron | 40.0% | |
| TGAGGTTGAACGTGTTTATG+AGG | - | chr1.3:61484994-61485013 | MS.gene20868:intron | 40.0% | |
| TGATTTGACTAACCTCCATC+TGG | + | chr1.3:61484346-61484365 | None:intergenic | 40.0% | |
| TGTTTAAGGAGTGGGAATCT+AGG | - | chr1.3:61485323-61485342 | MS.gene20868:intron | 40.0% | |
| TTCAACCACTCCTTTCACTT+TGG | + | chr1.3:61484672-61484691 | None:intergenic | 40.0% | |
| TTGGAGAAAGGTCAATTGGA+TGG | - | chr1.3:61485499-61485518 | MS.gene20868:intron | 40.0% | |
| ! | AAAGTACCACTCAAGCTGAA+GGG | - | chr1.3:61484072-61484091 | MS.gene20868:CDS | 40.0% |
| ! | AAGTTTGACTTAGGTGGTCT+AGG | - | chr1.3:61484276-61484295 | MS.gene20868:CDS | 40.0% |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | chr1.3:61483502-61483521 | MS.gene20868:CDS | 40.0% |
| ! | CCAAGTCTTATCCCACTAAT+TGG | + | chr1.3:61484498-61484517 | None:intergenic | 40.0% |
| ! | CTCGAGTTCATCTTTTCCTA+AGG | + | chr1.3:61483680-61483699 | None:intergenic | 40.0% |
| ! | GAGGTTAGTCAAATCACTTG+AGG | - | chr1.3:61484350-61484369 | MS.gene20868:CDS | 40.0% |
| ! | TAAAGTACCACTCAAGCTGA+AGG | - | chr1.3:61484071-61484090 | MS.gene20868:CDS | 40.0% |
| ! | TGGGACTGGTAATGTTAAAG+AGG | - | chr1.3:61485189-61485208 | MS.gene20868:intron | 40.0% |
| !! | AGAAAAGCACTTACAGCTTG+TGG | + | chr1.3:61485586-61485605 | None:intergenic | 40.0% |
| !! | AGCTGAGTTGATGCTTAAGA+AGG | - | chr1.3:61485105-61485124 | MS.gene20868:intron | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+GGG | - | chr1.3:61485456-61485475 | MS.gene20868:intron | 40.0% |
| !! | GAGGACCTTTCTTTAGGATT+CGG | - | chr1.3:61485455-61485474 | MS.gene20868:intron | 40.0% |
| !! | GTAACATCGACTCTGATTGA+AGG | - | chr1.3:61483819-61483838 | MS.gene20868:CDS | 40.0% |
| !! | TGAGTTGATGCTTAAGAAGG+TGG | - | chr1.3:61485108-61485127 | MS.gene20868:intron | 40.0% |
| AAACACGTTCAACCTCACCA+AGG | + | chr1.3:61484991-61485010 | None:intergenic | 45.0% | |
| AATTGTCCCTTCAGCTTGAG+TGG | + | chr1.3:61484081-61484100 | None:intergenic | 45.0% | |
| ACCAACTGAGGAACTTTCGA+CGG | + | chr1.3:61484887-61484906 | None:intergenic | 45.0% | |
| ACTAATTGGGATCGGCTACA+TGG | + | chr1.3:61484484-61484503 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | - | chr1.3:61484182-61484201 | MS.gene20868:CDS | 45.0% | |
| AGTCAAATCACTTGAGGCAG+AGG | - | chr1.3:61484356-61484375 | MS.gene20868:CDS | 45.0% | |
| ATGTAGCCGATCCCAATTAG+TGG | - | chr1.3:61484483-61484502 | MS.gene20868:CDS | 45.0% | |
| CATTACCAGTCCCAGCATAA+AGG | + | chr1.3:61485183-61485202 | None:intergenic | 45.0% | |
| GGCTGAGCTTCCAAATAAGA+AGG | - | chr1.3:61483567-61483586 | MS.gene20868:CDS | 45.0% | |
| GTGTACTTGTTCTTAGCAGG+AGG | + | chr1.3:61484722-61484741 | None:intergenic | 45.0% | |
| TACGATACTTTCGAAGCTCC+TGG | + | chr1.3:61483711-61483730 | None:intergenic | 45.0% | |
| TACTTGTTCTTAGCAGGAGG+AGG | + | chr1.3:61484719-61484738 | None:intergenic | 45.0% | |
| TCTTGCTGAGCCTTTATGCT+GGG | - | chr1.3:61485170-61485189 | MS.gene20868:intron | 45.0% | |
| TGTAGCCGATCCCAATTAGT+GGG | - | chr1.3:61484484-61484503 | MS.gene20868:CDS | 45.0% | |
| TGTGTCCAAAGTGAAAGGAG+TGG | - | chr1.3:61484664-61484683 | MS.gene20868:CDS | 45.0% | |
| TTACAGCTTGTGGTGAAGGT+TGG | + | chr1.3:61485576-61485595 | None:intergenic | 45.0% | |
| TTCTTGCTGAGCCTTTATGC+TGG | - | chr1.3:61485169-61485188 | MS.gene20868:intron | 45.0% | |
| ! | AGTGGGATAAGACTTGGTTG+TGG | - | chr1.3:61484501-61484520 | MS.gene20868:CDS | 45.0% |
| ! | TGCTTTGAATGACCTTGGTG+AGG | - | chr1.3:61484976-61484995 | MS.gene20868:intron | 45.0% |
| !! | TGTGCTGCTTTGAATGACCT+TGG | - | chr1.3:61484971-61484990 | MS.gene20868:intron | 45.0% |
| !! | TTTCTAGGTCGGCTAGTCTT+CGG | + | chr1.3:61483603-61483622 | None:intergenic | 45.0% |
| AAATAAGCGTAGCCGAGACG+AGG | - | chr1.3:61484162-61484181 | MS.gene20868:CDS | 50.0% | |
| ACCGTCGAAAGTTCCTCAGT+TGG | - | chr1.3:61484883-61484902 | MS.gene20868:intron | 50.0% | |
| ACTGCATCCGAATCATCTCC+TGG | - | chr1.3:61485706-61485725 | MS.gene20868:CDS | 50.0% | |
| AGTACGGAGAGTAGACCAGA+TGG | - | chr1.3:61484328-61484347 | MS.gene20868:CDS | 50.0% | |
| CATGGACAAGGAAGCTGTGT+CGG | - | chr1.3:61485405-61485424 | MS.gene20868:intron | 50.0% | |
| CCAACACAACATCCTCGTCT+CGG | + | chr1.3:61484177-61484196 | None:intergenic | 50.0% | |
| CTAGCCGACCTAGAAAAGAC+CGG | - | chr1.3:61483607-61483626 | MS.gene20868:CDS | 50.0% | |
| GCACTTACAGCTTGTGGTGA+AGG | + | chr1.3:61485580-61485599 | None:intergenic | 50.0% | |
| GCGATACCTCGAATGCATGA+TGG | + | chr1.3:61483738-61483757 | None:intergenic | 50.0% | |
| GCTGCAGAGGACCTTTCTTT+AGG | - | chr1.3:61485449-61485468 | MS.gene20868:intron | 50.0% | |
| GTCGTTTAGGTGTCAGACAC+CGG | + | chr1.3:61483867-61483886 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | chr1.3:61483513-61483532 | None:intergenic | 50.0% | |
| ! | AGATAGCTCCGATTGGTCAC+CGG | + | chr1.3:61485250-61485269 | None:intergenic | 50.0% |
| ! | TCCTCCGGTCTTTTCTAGGT+CGG | + | chr1.3:61483614-61483633 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1.3:61485545-61485564 | None:intergenic | 50.0% |
| !! | TGGTGCTATGAGCCACTTAG+AGG | - | chr1.3:61485519-61485538 | MS.gene20868:intron | 50.0% |
| ACGGAGAGTAGACCAGATGG+AGG | - | chr1.3:61484331-61484350 | MS.gene20868:CDS | 55.0% | |
| AGATCACCCCGGTGACCAAT+CGG | - | chr1.3:61485239-61485258 | MS.gene20868:intron | 55.0% | |
| CACCGGGGTGATCTTCTTGA+GGG | + | chr1.3:61485233-61485252 | None:intergenic | 55.0% | |
| CCGAGACGAGGATGTTGTGT+TGG | - | chr1.3:61484174-61484193 | MS.gene20868:CDS | 55.0% | |
| CTGAGCCTTTATGCTGGGAC+TGG | - | chr1.3:61485175-61485194 | MS.gene20868:intron | 55.0% | |
| CTGGTTCAACGTCTGCGACA+CGG | + | chr1.3:61483638-61483657 | None:intergenic | 55.0% | |
| GAAGCTCTCAAGAGCTGCAG+AGG | - | chr1.3:61485436-61485455 | MS.gene20868:intron | 55.0% | |
| GACCCTCAAGAAGATCACCC+CGG | - | chr1.3:61485228-61485247 | MS.gene20868:intron | 55.0% | |
| GAGGCCGCACTTTCAGAAGT+CGG | - | chr1.3:61485538-61485557 | MS.gene20868:CDS | 55.0% | |
| GCTTCTCCGACGACTATGCA+CGG | - | chr1.3:61483534-61483553 | MS.gene20868:CDS | 55.0% | |
| GTTCCGTGTCCAACACTTGC+CGG | - | chr1.3:61483845-61483864 | MS.gene20868:CDS | 55.0% | |
| TCACCGGGGTGATCTTCTTG+AGG | + | chr1.3:61485234-61485253 | None:intergenic | 55.0% | |
| TGAACTCGAGAGATGCGTCC+AGG | - | chr1.3:61483690-61483709 | MS.gene20868:CDS | 55.0% | |
| TGTCAGACACCGGCAAGTGT+TGG | + | chr1.3:61483857-61483876 | None:intergenic | 55.0% | |
| ! | ATAGCTCCGATTGGTCACCG+GGG | + | chr1.3:61485248-61485267 | None:intergenic | 55.0% |
| ! | CGGTTCCTCCGGTCTTTTCT+AGG | + | chr1.3:61483618-61483637 | None:intergenic | 55.0% |
| ! | CTGAAAGTGCGGCCTCTAAG+TGG | + | chr1.3:61485534-61485553 | None:intergenic | 55.0% |
| ! | GATAGCTCCGATTGGTCACC+GGG | + | chr1.3:61485249-61485268 | None:intergenic | 55.0% |
| ! | GGAAGCTGTGTCGGTCTTTG+AGG | - | chr1.3:61485414-61485433 | MS.gene20868:intron | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | chr1.3:61483512-61483531 | MS.gene20868:CDS | 55.0% |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | chr1.3:61483505-61483524 | MS.gene20868:CDS | 55.0% |
| ! | TGGTAAGTTTCGCGTTGGCG+CGG | + | chr1.3:61485148-61485167 | None:intergenic | 55.0% |
| !! | ACACCGGCAAGTGTTGGACA+CGG | + | chr1.3:61483851-61483870 | None:intergenic | 55.0% |
| !! | GGTCGGCTAGTCTTCGGTAA+AGG | + | chr1.3:61483597-61483616 | None:intergenic | 55.0% |
| !! | GTTGGTTGGTGTTGCAGTGC+AGG | - | chr1.3:61485366-61485385 | MS.gene20868:intron | 55.0% |
| ACGACTATGCACGGCTGCGA+CGG | - | chr1.3:61483543-61483562 | MS.gene20868:CDS | 60.0% | |
| GCCGACCTAGAAAAGACCGG+AGG | - | chr1.3:61483610-61483629 | MS.gene20868:CDS | 60.0% | |
| TCGCAGCCGTGCATAGTCGT+CGG | + | chr1.3:61483543-61483562 | None:intergenic | 60.0% | |
| ACTATGCACGGCTGCGACGG+CGG | - | chr1.3:61483546-61483565 | MS.gene20868:CDS | 65.0% | |
| CGTCTGCGACACGGTTCCTC+CGG | + | chr1.3:61483629-61483648 | None:intergenic | 65.0% | |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | chr1.3:61483524-61483543 | None:intergenic | 65.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | chr1.3:61483508-61483527 | MS.gene20868:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61483499 | 61485786 | 61483499 | ID=MS.gene20868 |
| chr1.3 | mRNA | 61483499 | 61485786 | 61483499 | ID=MS.gene20868.t1;Parent=MS.gene20868 |
| chr1.3 | exon | 61485535 | 61485786 | 61485535 | ID=MS.gene20868.t1.exon1;Parent=MS.gene20868.t1 |
| chr1.3 | CDS | 61485535 | 61485786 | 61485535 | ID=cds.MS.gene20868.t1;Parent=MS.gene20868.t1 |
| chr1.3 | exon | 61483499 | 61484689 | 61483499 | ID=MS.gene20868.t1.exon2;Parent=MS.gene20868.t1 |
| chr1.3 | CDS | 61483499 | 61484689 | 61483499 | ID=cds.MS.gene20868.t1;Parent=MS.gene20868.t1 |
| Gene Sequence |
| Protein sequence |
