AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20937

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20937.t1 MTR_1g085500 94.977 219 11 0 1 219 1 219 1.74e-152 422
MS.gene20937.t1 MTR_1g085140 70.500 200 59 0 19 218 20 219 1.01e-99 288
MS.gene20937.t1 MTR_7g111240 68.878 196 61 0 22 217 19 214 3.04e-94 275
MS.gene20937.t1 MTR_7g111240 68.878 196 58 1 22 217 19 211 4.13e-92 269
MS.gene20937.t1 MTR_2g019250 47.596 208 102 3 11 213 10 215 7.49e-60 187
MS.gene20937.t1 MTR_4g017040 47.115 208 103 3 11 213 10 215 1.03e-59 187
MS.gene20937.t1 MTR_1g079490 46.009 213 109 3 6 213 5 216 1.45e-59 187
MS.gene20937.t1 MTR_4g017050 47.115 208 103 3 11 213 10 215 1.47e-59 187
MS.gene20937.t1 MTR_5g046410 47.115 208 103 3 11 213 10 215 1.54e-59 186
MS.gene20937.t1 MTR_5g046430 47.115 208 103 3 11 213 10 215 1.54e-59 186
MS.gene20937.t1 MTR_4g017030 47.115 208 103 3 11 213 10 215 1.54e-59 186
MS.gene20937.t1 MTR_6g005330 47.393 211 104 4 8 213 6 214 6.35e-58 182
MS.gene20937.t1 MTR_6g005340 48.259 201 98 3 17 213 16 214 1.65e-57 181
MS.gene20937.t1 MTR_6g005360 48.259 201 98 3 17 213 16 214 2.85e-57 181
MS.gene20937.t1 MTR_6g005310 48.259 201 98 3 17 213 16 214 4.40e-57 180
MS.gene20937.t1 MTR_6g005380 49.010 202 95 4 8 203 6 205 3.82e-56 177
MS.gene20937.t1 MTR_1g023770 42.927 205 109 2 11 213 10 208 1.37e-55 176
MS.gene20937.t1 MTR_2g030855 44.898 196 103 2 20 213 19 211 4.84e-55 175
MS.gene20937.t1 MTR_1g112200 42.857 210 113 3 7 216 7 209 1.01e-54 174
MS.gene20937.t1 MTR_2g031270 43.216 199 107 3 18 213 17 212 1.53e-51 166
MS.gene20937.t1 MTR_6g005350 43.128 211 112 5 8 213 6 213 4.07e-51 165
MS.gene20937.t1 MTR_5g036570 43.077 195 110 1 22 215 26 220 2.87e-49 160
MS.gene20937.t1 MTR_1g060120 38.009 221 126 5 6 218 8 225 2.25e-48 158
MS.gene20937.t1 MTR_2g030895 43.860 171 93 2 46 213 7 177 1.86e-45 149
MS.gene20937.t1 MTR_2g030865 43.860 171 93 2 46 213 7 177 8.68e-45 147
MS.gene20937.t1 MTR_8g007300 42.703 185 102 3 6 188 10 192 2.47e-40 137
MS.gene20937.t1 MTR_8g020590 37.838 185 111 1 8 192 4 184 6.19e-38 131
MS.gene20937.t1 MTR_2g086620 39.394 198 96 6 19 211 23 201 1.06e-37 130
MS.gene20937.t1 MTR_2g086640 39.394 198 96 6 19 211 22 200 1.08e-37 130
MS.gene20937.t1 MTR_2g086630 39.394 198 96 6 19 211 23 201 1.46e-37 130
MS.gene20937.t1 MTR_8g020650 35.417 192 120 3 26 217 21 208 2.90e-36 127
MS.gene20937.t1 MTR_8g020630 34.673 199 126 3 19 217 14 208 3.10e-36 127
MS.gene20937.t1 MTR_2g031300 40.625 160 73 2 46 203 7 146 4.48e-35 122
MS.gene20937.t1 MTR_3g096330 37.864 206 122 4 9 210 561 764 4.74e-35 131
MS.gene20937.t1 MTR_2g036120 36.788 193 118 3 26 218 21 209 8.04e-35 123
MS.gene20937.t1 MTR_4g052770 43.284 134 73 2 79 211 71 202 1.29e-34 122
MS.gene20937.t1 MTR_2g045100 37.019 208 127 3 8 215 3 206 1.51e-34 122
MS.gene20937.t1 MTR_4g052780 43.284 134 73 2 79 211 71 202 1.98e-34 122
MS.gene20937.t1 MTR_3g019650 36.316 190 117 3 26 215 20 205 2.06e-34 122
MS.gene20937.t1 MTR_4g010340 38.942 208 109 8 9 213 8 200 3.78e-34 121
MS.gene20937.t1 MTR_8g020670 32.381 210 134 4 8 217 7 208 5.37e-34 121
MS.gene20937.t1 MTR_5g031460 33.175 211 131 4 8 215 3 206 1.18e-33 120
MS.gene20937.t1 MTR_3g019680 36.316 190 117 3 26 215 20 205 1.72e-33 119
MS.gene20937.t1 MTR_3g019710 35.500 200 119 4 19 215 14 206 3.02e-33 119
MS.gene20937.t1 MTR_2g041550 36.559 186 110 3 29 211 23 203 5.65e-33 118
MS.gene20937.t1 MTR_2g041570 34.300 207 129 3 6 212 5 204 2.23e-32 117
MS.gene20937.t1 MTR_2g041580 34.466 206 128 3 6 211 5 203 3.10e-32 116
MS.gene20937.t1 MTR_2g044040 34.135 208 129 4 8 215 7 206 6.26e-32 115
MS.gene20937.t1 MTR_0284s0010 34.518 197 125 3 19 215 14 206 1.07e-30 112
MS.gene20937.t1 MTR_8g020770 38.278 209 113 6 8 208 7 207 4.46e-30 110
MS.gene20937.t1 MTR_7g011340 35.450 189 118 4 27 215 22 206 1.38e-29 109
MS.gene20937.t1 MTR_8g020750 35.784 204 122 4 9 211 10 205 3.11e-29 108
MS.gene20937.t1 MTR_8g020763 36.047 172 107 3 42 213 17 185 7.18e-29 107
MS.gene20937.t1 MTR_8g020610 32.039 206 132 3 6 211 3 200 7.89e-28 105
MS.gene20937.t1 MTR_2g019780 32.227 211 134 6 5 213 4 207 2.52e-27 103
MS.gene20937.t1 MTR_8g020760 34.343 198 120 6 19 213 16 206 3.18e-26 100
MS.gene20937.t1 MTR_3g073170 33.155 187 117 5 28 213 26 205 9.33e-25 97.1
MS.gene20937.t1 MTR_3g019810 33.171 205 125 6 8 211 109 302 1.95e-24 98.6
MS.gene20937.t1 MTR_4g027415 40.650 123 71 2 27 149 22 142 1.54e-20 84.3
MS.gene20937.t1 MTR_3g019610 39.252 107 58 3 8 111 3 105 7.59e-15 68.6
MS.gene20937.t1 MTR_2g072560 36.842 114 67 2 8 121 7 115 3.60e-14 67.4
MS.gene20937.t1 MTR_2g030915 44.776 67 25 2 94 160 1 55 1.02e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20937.t1 AT3G62020 70.000 220 63 2 1 218 1 219 1.68e-108 311
MS.gene20937.t1 AT1G02335 65.403 211 73 0 8 218 9 219 6.83e-102 294
MS.gene20937.t1 AT1G09560 70.202 198 59 0 21 218 22 219 2.29e-99 288
MS.gene20937.t1 AT3G62020 74.863 183 43 2 38 218 9 190 2.01e-98 284
MS.gene20937.t1 AT5G26700 59.794 194 75 1 25 218 23 213 3.11e-86 254
MS.gene20937.t1 AT3G05930 53.425 219 101 1 1 218 1 219 2.21e-78 234
MS.gene20937.t1 AT1G18980 45.933 209 111 1 7 215 13 219 5.04e-64 198
MS.gene20937.t1 AT1G18970 46.411 209 110 1 7 215 13 219 2.10e-63 196
MS.gene20937.t1 AT5G38910 48.558 208 103 2 11 214 12 219 5.36e-62 193
MS.gene20937.t1 AT4G14630 50.000 198 94 2 21 213 24 221 2.36e-61 191
MS.gene20937.t1 AT5G39160 45.498 211 111 2 9 215 10 220 2.75e-61 191
MS.gene20937.t1 AT5G39190 45.498 211 111 2 9 215 10 220 4.73e-61 191
MS.gene20937.t1 AT5G39130 45.498 211 111 2 9 215 10 220 5.05e-61 191
MS.gene20937.t1 AT5G39150 45.972 211 109 2 8 213 8 218 7.40e-61 190
MS.gene20937.t1 AT5G38930 49.246 199 97 2 19 213 22 220 1.65e-60 189
MS.gene20937.t1 AT5G39180 45.972 211 109 2 8 213 8 218 2.40e-60 189
MS.gene20937.t1 AT5G39120 47.980 198 98 2 21 213 21 218 2.59e-60 189
MS.gene20937.t1 AT5G38940 48.980 196 96 2 22 213 25 220 3.46e-60 188
MS.gene20937.t1 AT3G05950 48.095 210 103 3 12 215 13 222 4.34e-60 188
MS.gene20937.t1 AT5G38940 48.980 196 96 2 22 213 49 244 4.50e-60 189
MS.gene20937.t1 AT5G39110 46.602 206 105 2 13 213 14 219 6.10e-60 187
MS.gene20937.t1 AT5G38960 48.000 200 99 3 21 215 24 223 1.79e-59 186
MS.gene20937.t1 AT3G04200 45.283 212 110 3 11 216 13 224 4.42e-59 186
MS.gene20937.t1 AT5G39160 43.810 210 112 2 9 215 10 216 8.86e-58 182
MS.gene20937.t1 AT3G04170 43.662 213 111 4 11 217 12 221 1.52e-51 166
MS.gene20937.t1 AT3G04180 43.069 202 105 4 17 211 20 218 2.85e-50 163
MS.gene20937.t1 AT5G39160 40.000 210 102 2 9 215 10 198 3.89e-50 162
MS.gene20937.t1 AT5G39190 40.000 210 102 2 9 215 10 198 6.21e-50 161
MS.gene20937.t1 AT3G04150 41.063 207 116 3 11 211 12 218 7.07e-50 162
MS.gene20937.t1 AT3G04190 42.211 199 111 2 17 211 20 218 4.10e-49 160
MS.gene20937.t1 AT3G04150 39.091 220 115 3 11 211 12 231 1.57e-48 159
MS.gene20937.t1 AT3G10080 40.887 203 112 4 19 216 22 221 3.72e-47 155
MS.gene20937.t1 AT3G10080 40.887 203 112 4 19 216 93 292 1.86e-46 155
MS.gene20937.t1 AT5G38910 40.976 205 84 2 11 213 12 181 2.01e-42 142
MS.gene20937.t1 AT1G74820 36.493 211 127 2 8 213 16 224 4.30e-42 142
MS.gene20937.t1 AT1G72610 36.559 186 116 1 26 211 18 201 4.73e-39 134
MS.gene20937.t1 AT1G10460 38.235 204 109 5 22 214 18 215 1.74e-38 132
MS.gene20937.t1 AT5G61750 39.535 172 102 1 11 180 7 178 1.28e-37 130
MS.gene20937.t1 AT5G20630 35.784 204 125 2 8 211 7 204 1.91e-36 127
MS.gene20937.t1 AT5G38950 39.744 78 45 1 143 218 2 79 1.18e-12 62.4

Find 42 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAAATTAAGTCTTCTT+AGG 0.231546 1.3:+60706228 None:intergenic
TGATAATGCACCAACCCTTT+TGG 0.273835 1.3:+60706429 None:intergenic
CAACAACACTGTAGGATCTT+TGG 0.279663 1.3:-60706670 MS.gene20937:CDS
TAATCATGTCACCAACAAAT+TGG 0.290827 1.3:-60707474 None:intergenic
CAAAGGTCTTGAAGTGTATC+AGG 0.335291 1.3:+60707400 None:intergenic
GTGCATTATCAGAAGAATAA+TGG 0.349181 1.3:-60706417 MS.gene20937:CDS
TGCATTATCAGAAGAATAAT+GGG 0.349638 1.3:-60706416 MS.gene20937:CDS
CTTTCAGATTGATACTAAAC+AGG 0.392793 1.3:-60706277 MS.gene20937:CDS
TATGTAGGTGTTAAGGTGAA+TGG 0.396371 1.3:-60706768 MS.gene20937:intron
ACAGTGTTGTTGACAACCTT+AGG 0.398287 1.3:+60706681 None:intergenic
CACGAGGGTGTGTGTGTGGC+GGG 0.405545 1.3:+60706559 None:intergenic
GAAATCTTTGTGTTCCCAAA+AGG 0.405554 1.3:-60706444 MS.gene20937:CDS
TCCTGATGATGTTCTTGCTC+AGG 0.416572 1.3:-60706301 MS.gene20937:CDS
TGTGTAGCTCTTCCATCATC+AGG 0.427639 1.3:-60707379 MS.gene20937:intron
TGTGGCGGGTTAAGACCATT+AGG 0.441756 1.3:+60706573 None:intergenic
AGAATAGACTACAAACCTAA+TGG 0.465489 1.3:-60706588 MS.gene20937:CDS
GCCTGAGCAAGAACATCATC+AGG 0.472294 1.3:+60706300 None:intergenic
CAGTGTTGTTGACAACCTTA+GGG 0.477171 1.3:+60706682 None:intergenic
AAATCTTTGTGTTCCCAAAA+GGG 0.493371 1.3:-60706443 MS.gene20937:CDS
CTTTGTGTTCCCAAAAGGGT+TGG 0.498869 1.3:-60706439 MS.gene20937:CDS
CATTATACATTACCTGATGA+TGG 0.506437 1.3:+60707367 None:intergenic
ATTCCTGGACTCAACACATT+GGG 0.515180 1.3:-60706624 MS.gene20937:CDS
GCACGAGGGTGTGTGTGTGG+CGG 0.527458 1.3:+60706558 None:intergenic
ACTCCCAATGTGTTGAGTCC+AGG 0.538199 1.3:+60706621 None:intergenic
TATGTCTTATGTAGGTGTTA+AGG 0.563003 1.3:-60706775 MS.gene20937:intron
TTGGAAGGTGAATTAGATGT+AGG 0.564991 1.3:-60706516 MS.gene20937:CDS
AATTCCTGGACTCAACACAT+TGG 0.570200 1.3:-60706625 MS.gene20937:CDS
TGTATCAGGATCAGAAGCGA+AGG 0.579047 1.3:+60707414 None:intergenic
AGAAGCGAAGGTAGATGAGA+TGG 0.579500 1.3:+60707426 None:intergenic
TGATGGTATAGCAAACCCTA+AGG 0.582336 1.3:-60706697 MS.gene20937:CDS
GAAACAATTGACAAAGTACC+AGG 0.582389 1.3:+60706351 None:intergenic
GGTGAATGGATTTGCATGCA+AGG 0.593738 1.3:-60706754 MS.gene20937:CDS
CTGTTTAGTATCAATCTGAA+AGG 0.609012 1.3:+60706278 None:intergenic
TCTGTTTGACTCTACACCAA+CGG 0.619003 1.3:-60706325 MS.gene20937:CDS
GTGGCACGAGGGTGTGTGTG+TGG 0.621879 1.3:+60706555 None:intergenic
AGAACATCATCAGGAACCGT+TGG 0.626429 1.3:+60706309 None:intergenic
AAGGTTGTCAACAACACTGT+AGG 0.630939 1.3:-60706678 MS.gene20937:CDS
AAAACAACCTCAGTGGCACG+AGG 0.637231 1.3:+60706543 None:intergenic
CACACACCCTCGTGCCACTG+AGG 0.678341 1.3:-60706550 MS.gene20937:CDS
AAACAACCTCAGTGGCACGA+GGG 0.703640 1.3:+60706544 None:intergenic
GCATTATCAGAAGAATAATG+GGG 0.712368 1.3:-60706415 MS.gene20937:CDS
ATGATGGAAGAGCTACACAA+AGG 0.722041 1.3:+60707383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAAAATAGTTGAAC+TGG - chr1.3:60706820-60706839 MS.gene20937:intron 15.0%
!!! TACTACTATTATCATTTTTT+TGG - chr1.3:60706406-60706425 MS.gene20937:CDS 15.0%
!! AAAAAAATTGTCCAATTTGT+TGG + chr1.3:60706245-60706264 None:intergenic 20.0%
!! ATTTCTAAGTCCATAAAAAA+AGG - chr1.3:60707237-60707256 MS.gene20937:intron 20.0%
!! CAAAGTTATGTCTAATATTA+TGG - chr1.3:60706907-60706926 MS.gene20937:intron 20.0%
!!! AAAGATTTCACCTTTTTTTA+TGG + chr1.3:60707250-60707269 None:intergenic 20.0%
! ATTTGAAGGAGTTAAAGAAT+CGG + chr1.3:60706705-60706724 None:intergenic 25.0%
! GATTAAATTGTTTATGCAAC+TGG - chr1.3:60706863-60706882 MS.gene20937:intron 25.0%
! TATTATGGTATGTCTTATGT+AGG - chr1.3:60706922-60706941 MS.gene20937:intron 25.0%
! TGCATTATCAGAAGAATAAT+GGG - chr1.3:60707289-60707308 MS.gene20937:intron 25.0%
! TGTAACTATTGCTAAAATTG+TGG - chr1.3:60706513-60706532 MS.gene20937:CDS 25.0%
! TGTATAATGCTTCATGTATA+TGG - chr1.3:60706352-60706371 MS.gene20937:CDS 25.0%
!!! AAGTTGTTTTCATAATCACA+CGG + chr1.3:60706795-60706814 None:intergenic 25.0%
AAATCTTTGTGTTCCCAAAA+GGG - chr1.3:60707262-60707281 MS.gene20937:intron 30.0%
AACTATTGCTAAAATTGTGG+AGG - chr1.3:60706516-60706535 MS.gene20937:CDS 30.0%
AGAATAGACTACAAACCTAA+TGG - chr1.3:60707117-60707136 MS.gene20937:intron 30.0%
CATTATACATTACCTGATGA+TGG + chr1.3:60706341-60706360 None:intergenic 30.0%
CTCTAACTTAGTGTTATGTT+TGG - chr1.3:60706432-60706451 MS.gene20937:CDS 30.0%
CTGTTTAGTATCAATCTGAA+AGG + chr1.3:60707430-60707449 None:intergenic 30.0%
CTTTCAGATTGATACTAAAC+AGG - chr1.3:60707428-60707447 MS.gene20937:CDS 30.0%
GCATTATCAGAAGAATAATG+GGG - chr1.3:60707290-60707309 MS.gene20937:intron 30.0%
GTGCATTATCAGAAGAATAA+TGG - chr1.3:60707288-60707307 MS.gene20937:intron 30.0%
TATGTCTTATGTAGGTGTTA+AGG - chr1.3:60706930-60706949 MS.gene20937:intron 30.0%
! CAATGAGTTTTGCAAAATCA+AGG - chr1.3:60706460-60706479 MS.gene20937:CDS 30.0%
!! AGTTGTTTTCATAATCACAC+GGG + chr1.3:60706794-60706813 None:intergenic 30.0%
!!! TCCAGGAATTTTTTCAACAT+TGG + chr1.3:60707070-60707089 None:intergenic 30.0%
ATTCCCTTATGTACTCTTGA+GGG - chr1.3:60706594-60706613 MS.gene20937:CDS 35.0%
GAAATCTTTGTGTTCCCAAA+AGG - chr1.3:60707261-60707280 MS.gene20937:intron 35.0%
GCCAATGTTGAAAAAATTCC+TGG - chr1.3:60707066-60707085 MS.gene20937:intron 35.0%
TATAGAGTGCATAGTTCACT+CGG + chr1.3:60706741-60706760 None:intergenic 35.0%
TATGTAGGTGTTAAGGTGAA+TGG - chr1.3:60706937-60706956 MS.gene20937:intron 35.0%
TTGGAAGGTGAATTAGATGT+AGG - chr1.3:60707189-60707208 MS.gene20937:intron 35.0%
! ATGAGAGTGCAAAAAACTCA+AGG + chr1.3:60706563-60706582 None:intergenic 35.0%
! GAAACAATTGACAAAGTACC+AGG + chr1.3:60707357-60707376 None:intergenic 35.0%
!!! GCAGCTGATTTTTTCTTTGA+TGG - chr1.3:60706991-60707010 MS.gene20937:intron 35.0%
AAGGTTGTCAACAACACTGT+AGG - chr1.3:60707027-60707046 MS.gene20937:intron 40.0%
AATTCCTGGACTCAACACAT+TGG - chr1.3:60707080-60707099 MS.gene20937:intron 40.0%
ATTCCTGGACTCAACACATT+GGG - chr1.3:60707081-60707100 MS.gene20937:intron 40.0%
CAAAGGTCTTGAAGTGTATC+AGG + chr1.3:60706308-60706327 None:intergenic 40.0%
CAACAACACTGTAGGATCTT+TGG - chr1.3:60707035-60707054 MS.gene20937:intron 40.0%
CAACACAAAAACAACCTCAG+TGG + chr1.3:60707172-60707191 None:intergenic 40.0%
GATTCCCTTATGTACTCTTG+AGG - chr1.3:60706593-60706612 MS.gene20937:CDS 40.0%
GTTGAGCTAAGGGAATTTGA+AGG + chr1.3:60706719-60706738 None:intergenic 40.0%
TCTGTTTGACTCTACACCAA+CGG - chr1.3:60707380-60707399 MS.gene20937:CDS 40.0%
TGATGGTATAGCAAACCCTA+AGG - chr1.3:60707008-60707027 MS.gene20937:intron 40.0%
! ACAGTGTTGTTGACAACCTT+AGG + chr1.3:60707027-60707046 None:intergenic 40.0%
! AGACCCTCAAGAGTACATAA+GGG + chr1.3:60706600-60706619 None:intergenic 40.0%
! ATGATGGAAGAGCTACACAA+AGG + chr1.3:60706325-60706344 None:intergenic 40.0%
! CAGTGTTGTTGACAACCTTA+GGG + chr1.3:60707026-60707045 None:intergenic 40.0%
! GATAATGCACCAACCCTTTT+GGG + chr1.3:60707278-60707297 None:intergenic 40.0%
! GCTTTTAACAGTCAACTTCC+TGG - chr1.3:60707336-60707355 MS.gene20937:intron 40.0%
!! TGATAATGCACCAACCCTTT+TGG + chr1.3:60707279-60707298 None:intergenic 40.0%
!!! CACTGAGGTTGTTTTTGTGT+TGG - chr1.3:60707170-60707189 MS.gene20937:intron 40.0%
!!! GAGGTTGTTTTTGTGTTGGA+AGG - chr1.3:60707174-60707193 MS.gene20937:intron 40.0%
AGAACATCATCAGGAACCGT+TGG + chr1.3:60707399-60707418 None:intergenic 45.0%
AGAAGCGAAGGTAGATGAGA+TGG + chr1.3:60706282-60706301 None:intergenic 45.0%
AGTTCACTCGGTTGAGCTAA+GGG + chr1.3:60706729-60706748 None:intergenic 45.0%
CTTTGTGTTCCCAAAAGGGT+TGG - chr1.3:60707266-60707285 MS.gene20937:intron 45.0%
TAGTTCACTCGGTTGAGCTA+AGG + chr1.3:60706730-60706749 None:intergenic 45.0%
TCTTGAGGGTCTGTTTGGAT+TGG - chr1.3:60706608-60706627 MS.gene20937:CDS 45.0%
TGTACTCTTGAGGGTCTGTT+TGG - chr1.3:60706603-60706622 MS.gene20937:CDS 45.0%
TGTATCAGGATCAGAAGCGA+AGG + chr1.3:60706294-60706313 None:intergenic 45.0%
TGTGTAGCTCTTCCATCATC+AGG - chr1.3:60706326-60706345 MS.gene20937:CDS 45.0%
! CAGACCCTCAAGAGTACATA+AGG + chr1.3:60706601-60706620 None:intergenic 45.0%
! GGTGAATGGATTTGCATGCA+AGG - chr1.3:60706951-60706970 MS.gene20937:intron 45.0%
! TCCTGATGATGTTCTTGCTC+AGG - chr1.3:60707404-60707423 MS.gene20937:CDS 45.0%
AAAACAACCTCAGTGGCACG+AGG + chr1.3:60707165-60707184 None:intergenic 50.0%
AAACAACCTCAGTGGCACGA+GGG + chr1.3:60707164-60707183 None:intergenic 50.0%
ACTCCCAATGTGTTGAGTCC+AGG + chr1.3:60707087-60707106 None:intergenic 50.0%
GCCTGAGCAAGAACATCATC+AGG + chr1.3:60707408-60707427 None:intergenic 50.0%
!! TGTGGCGGGTTAAGACCATT+AGG + chr1.3:60707135-60707154 None:intergenic 50.0%
! CACACACCCTCGTGCCACTG+AGG - chr1.3:60707155-60707174 MS.gene20937:intron 65.0%
! CACGAGGGTGTGTGTGTGGC+GGG + chr1.3:60707149-60707168 None:intergenic 65.0%
! GCACGAGGGTGTGTGTGTGG+CGG + chr1.3:60707150-60707169 None:intergenic 65.0%
! GTGGCACGAGGGTGTGTGTG+TGG + chr1.3:60707153-60707172 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 60706236 60707491 60706236 ID=MS.gene20937
chr1.3 mRNA 60706236 60707491 60706236 ID=MS.gene20937.t1;Parent=MS.gene20937
chr1.3 exon 60707380 60707491 60707380 ID=MS.gene20937.t1.exon1;Parent=MS.gene20937.t1
chr1.3 CDS 60707380 60707491 60707380 ID=cds.MS.gene20937.t1;Parent=MS.gene20937.t1
chr1.3 exon 60706236 60706783 60706236 ID=MS.gene20937.t1.exon2;Parent=MS.gene20937.t1
chr1.3 CDS 60706236 60706783 60706236 ID=cds.MS.gene20937.t1;Parent=MS.gene20937.t1
Gene Sequence

>MS.gene20937

ATGTCACCAACAAATTGGACAATTTTTTTCATTTTGTGCTGTGCCATCTCATCTACCTTCGCTTCTGATCCTGATACACTTCAAGACCTTTGTGTAGCTCTTCCATCATCAGGTAATGTATAATGCTTCATGTATATGGTTTTATCATTTTTTTTAGCATCAAAACATTGTACTACTATTATCATTTTTTTGGCATCTCTAACTTAGTGTTATGTTTGGATGATCAATGAGTTTTGCAAAATCAAGGTGACACTGTGAGTTTGTTGAAACTTCAAAGTGTAACTATTGCTAAAATTGTGGAGGTTCATCGTTATGTCGTTTTCACCTTGAGTTTTTTGCACTCTCATTTGCTAATTTGATTCCCTTATGTACTCTTGAGGGTCTGTTTGGATTGGTTTTTTTAATATGTTAATATTAGTATGCTAGTTGTTATGTTAGTATATTTTCTTTCACTAAGATTTGAACTCCGATTCTTTAACTCCTTCAAATTCCCTTAGCTCAACCGAGTGAACTATGCACTCTATAAGTAAATTTCAGCTCATTGCTATAAGCTCTCCCGTGTGATTATGAAAACAACTTATAACTTATATAAAAATAGTTGAACTGGATTGTATACTATAAACATTTGATTAAATTGTTTATGCAACTGGAACTTATTGTAATAGAAGTAGCAAAGTTATGTCTAATATTATGGTATGTCTTATGTAGGTGTTAAGGTGAATGGATTTGCATGCAAGGCAGAGTCAAATGTAACAGCAGCTGATTTTTTCTTTGATGGTATAGCAAACCCTAAGGTTGTCAACAACACTGTAGGATCTTTGGTTACTGCAGCCAATGTTGAAAAAATTCCTGGACTCAACACATTGGGAGTATCTTTATCAAGAATAGACTACAAACCTAATGGTCTTAACCCGCCACACACACACCCTCGTGCCACTGAGGTTGTTTTTGTGTTGGAAGGTGAATTAGATGTAGGTTTTATCACTACATCAAACAAACTCATTTCTAAGTCCATAAAAAAAGGTGAAATCTTTGTGTTCCCAAAAGGGTTGGTGCATTATCAGAAGAATAATGGGGATAAAGCTGCTTCTGTGATTTCTGCTTTTAACAGTCAACTTCCTGGTACTTTGTCAATTGTTTCATCTCTGTTTGACTCTACACCAACGGTTCCTGATGATGTTCTTGCTCAGGCCTTTCAGATTGATACTAAACAGGTTGATGAAATAAAGACAAAGATTGCTCCTAAGAAGACTTAA
Protein sequence

>MS.gene20937.t1

MSPTNWTIFFILCCAISSTFASDPDTLQDLCVALPSSGVKVNGFACKAESNVTAADFFFDGIANPKVVNNTVGSLVTAANVEKIPGLNTLGVSLSRIDYKPNGLNPPHTHPRATEVVFVLEGELDVGFITTSNKLISKSIKKGEIFVFPKGLVHYQKNNGDKAASVISAFNSQLPGTLSIVSSLFDSTPTVPDDVLAQAFQIDTKQVDEIKTKIAPKKT