Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049302.t1 | XP_003602583.1 | 98.3 | 633 | 11 | 0 | 1 | 633 | 5 | 637 | 0.00E+00 | 1301.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049302.t1 | Q9LSB1 | 67.7 | 637 | 185 | 6 | 14 | 633 | 22 | 654 | 3.5e-261 | 902.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049302.t1 | G7JBH4 | 98.3 | 633 | 11 | 0 | 1 | 633 | 5 | 637 | 0.0e+00 | 1301.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene050649 | 0.809125 | 2.21E-50 | -1.69E-46 |
| MS.gene049302 | MS.gene06426 | 0.976571 | 4.42E-142 | -1.69E-46 |
| MS.gene049302 | MS.gene066058 | 0.815435 | 9.26E-52 | -1.69E-46 |
| MS.gene049302 | MS.gene072445 | 0.816236 | 6.14E-52 | -1.69E-46 |
| MS.gene049302 | MS.gene07246 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene049302 | MS.gene07618 | 0.801316 | 9.54E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene08679 | 0.856742 | 2.62E-62 | -1.69E-46 |
| MS.gene049302 | MS.gene08742 | 0.805981 | 1.03E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene20937 | 0.82073 | 5.88E-53 | -1.69E-46 |
| MS.gene049302 | MS.gene21112 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene26381 | 0.821894 | 3.17E-53 | -1.69E-46 |
| MS.gene049302 | MS.gene29731 | 0.819998 | 8.65E-53 | -1.69E-46 |
| MS.gene049302 | MS.gene30980 | 0.981126 | 7.77E-152 | -1.69E-46 |
| MS.gene049302 | MS.gene41197 | 0.813995 | 1.93E-51 | -1.69E-46 |
| MS.gene049302 | MS.gene49811 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene53003 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene049302 | MS.gene56810 | 0.803627 | 3.19E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene58679 | 0.828681 | 7.85E-55 | -1.69E-46 |
| MS.gene049302 | MS.gene69797 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene71459 | 0.809498 | 1.84E-50 | -1.69E-46 |
| MS.gene049302 | MS.gene71460 | 0.814316 | 1.64E-51 | -1.69E-46 |
| MS.gene049302 | MS.gene78342 | 0.817594 | 3.04E-52 | -1.69E-46 |
| MS.gene049302 | MS.gene78679 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene049302 | MS.gene90480 | 0.816794 | 4.60E-52 | -1.69E-46 |
| MS.gene049302 | MS.gene94168 | 0.807543 | 4.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026687 | MS.gene049302 | PPI |
| MS.gene32326 | MS.gene049302 | PPI |
| MS.gene049302 | MS.gene054153 | PPI |
| MS.gene31842 | MS.gene049302 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049302.t1 | MTR_3g095910 | 98.262 | 633 | 11 | 0 | 1 | 633 | 5 | 637 | 0.0 | 1300 |
| MS.gene049302.t1 | MTR_1g029130 | 66.773 | 626 | 196 | 5 | 19 | 633 | 3 | 627 | 0.0 | 875 |
| MS.gene049302.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 124 | 589 | 55 | 535 | 1.18e-163 | 479 |
| MS.gene049302.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 124 | 589 | 108 | 588 | 5.19e-163 | 480 |
| MS.gene049302.t1 | MTR_1g019530 | 45.582 | 498 | 253 | 9 | 106 | 589 | 91 | 584 | 2.14e-149 | 445 |
| MS.gene049302.t1 | MTR_1g082880 | 44.726 | 474 | 221 | 8 | 147 | 592 | 91 | 551 | 9.74e-139 | 416 |
| MS.gene049302.t1 | MTR_7g113610 | 40.381 | 525 | 273 | 10 | 100 | 595 | 48 | 561 | 1.37e-136 | 411 |
| MS.gene049302.t1 | MTR_1g080460 | 35.802 | 162 | 103 | 1 | 302 | 463 | 27 | 187 | 1.05e-27 | 118 |
| MS.gene049302.t1 | MTR_7g115460 | 35.119 | 168 | 108 | 1 | 296 | 463 | 30 | 196 | 1.92e-27 | 117 |
| MS.gene049302.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 299 | 462 | 23 | 225 | 1.75e-17 | 83.6 |
| MS.gene049302.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 299 | 462 | 23 | 225 | 5.12e-17 | 83.2 |
| MS.gene049302.t1 | MTR_1g084670 | 27.941 | 204 | 108 | 4 | 298 | 462 | 19 | 222 | 5.17e-16 | 79.0 |
| MS.gene049302.t1 | MTR_1g084670 | 27.481 | 262 | 134 | 9 | 295 | 512 | 16 | 265 | 5.91e-16 | 79.7 |
| MS.gene049302.t1 | MTR_1g084670 | 35.043 | 117 | 73 | 1 | 298 | 411 | 19 | 135 | 8.42e-16 | 77.4 |
| MS.gene049302.t1 | MTR_4g132185 | 26.961 | 204 | 110 | 3 | 298 | 462 | 20 | 223 | 1.41e-15 | 78.6 |
| MS.gene049302.t1 | MTR_5g012590 | 28.000 | 175 | 111 | 5 | 300 | 462 | 39 | 210 | 2.80e-14 | 76.3 |
| MS.gene049302.t1 | MTR_7g111850 | 24.016 | 254 | 139 | 7 | 302 | 512 | 26 | 268 | 1.60e-12 | 69.3 |
| MS.gene049302.t1 | MTR_4g100950 | 26.163 | 172 | 118 | 4 | 300 | 462 | 37 | 208 | 1.60e-12 | 70.5 |
| MS.gene049302.t1 | MTR_1g084660 | 26.562 | 256 | 125 | 9 | 298 | 512 | 19 | 252 | 1.20e-11 | 66.6 |
| MS.gene049302.t1 | MTR_1g084660 | 26.368 | 201 | 102 | 4 | 298 | 462 | 19 | 209 | 1.30e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049302.t1 | AT3G18660 | 67.290 | 642 | 189 | 6 | 9 | 633 | 17 | 654 | 0.0 | 885 |
| MS.gene049302.t1 | AT3G18660 | 66.822 | 642 | 188 | 6 | 9 | 633 | 17 | 650 | 0.0 | 877 |
| MS.gene049302.t1 | AT3G18660 | 66.667 | 642 | 188 | 6 | 9 | 633 | 17 | 649 | 0.0 | 875 |
| MS.gene049302.t1 | AT1G77130 | 63.065 | 620 | 192 | 9 | 1 | 609 | 1 | 594 | 0.0 | 788 |
| MS.gene049302.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 124 | 592 | 43 | 523 | 9.28e-171 | 497 |
| MS.gene049302.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 124 | 592 | 111 | 591 | 1.08e-169 | 497 |
| MS.gene049302.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 124 | 592 | 122 | 602 | 1.30e-169 | 497 |
| MS.gene049302.t1 | AT4G33330 | 50.716 | 489 | 219 | 9 | 124 | 595 | 111 | 594 | 2.02e-169 | 497 |
| MS.gene049302.t1 | AT1G08990 | 44.490 | 490 | 243 | 8 | 124 | 591 | 79 | 561 | 6.73e-142 | 425 |
| MS.gene049302.t1 | AT1G54940 | 44.422 | 493 | 231 | 10 | 124 | 589 | 74 | 550 | 7.81e-137 | 411 |
| MS.gene049302.t1 | AT4G33330 | 50.000 | 350 | 154 | 8 | 124 | 456 | 122 | 467 | 2.60e-107 | 332 |
| MS.gene049302.t1 | AT5G18480 | 36.095 | 169 | 107 | 1 | 294 | 462 | 24 | 191 | 1.41e-29 | 123 |
| MS.gene049302.t1 | AT1G60470 | 27.413 | 259 | 131 | 7 | 299 | 512 | 21 | 267 | 7.85e-18 | 85.5 |
| MS.gene049302.t1 | AT1G60450 | 27.184 | 206 | 109 | 3 | 298 | 462 | 16 | 221 | 1.92e-16 | 81.6 |
| MS.gene049302.t1 | AT1G56600 | 26.357 | 258 | 133 | 7 | 300 | 512 | 21 | 266 | 4.75e-16 | 80.5 |
| MS.gene049302.t1 | AT1G09350 | 25.616 | 203 | 111 | 2 | 300 | 462 | 15 | 217 | 1.39e-15 | 79.0 |
| MS.gene049302.t1 | AT4G26250 | 25.806 | 217 | 120 | 4 | 300 | 475 | 24 | 240 | 1.50e-15 | 79.0 |
| MS.gene049302.t1 | AT5G30500 | 25.123 | 203 | 112 | 3 | 297 | 459 | 21 | 223 | 2.15e-14 | 73.9 |
| MS.gene049302.t1 | AT5G30500 | 32.203 | 118 | 77 | 1 | 297 | 411 | 21 | 138 | 1.88e-13 | 72.4 |
| MS.gene049302.t1 | AT2G47180 | 34.211 | 114 | 72 | 1 | 302 | 412 | 31 | 144 | 2.87e-13 | 72.0 |
| MS.gene049302.t1 | AT4G16600 | 25.989 | 177 | 114 | 6 | 300 | 463 | 58 | 230 | 2.24e-11 | 67.0 |
| MS.gene049302.t1 | AT2G35710 | 23.810 | 210 | 145 | 5 | 266 | 463 | 28 | 234 | 2.42e-11 | 65.9 |
| MS.gene049302.t1 | AT5G23790 | 31.858 | 113 | 74 | 1 | 302 | 411 | 23 | 135 | 7.62e-11 | 64.3 |
| MS.gene049302.t1 | AT2G35710 | 26.136 | 176 | 115 | 5 | 300 | 463 | 62 | 234 | 9.60e-11 | 65.1 |
Find 131 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 3.3:+79578564 | MS.gene049302:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 3.3:-79577629 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 3.3:+79578589 | MS.gene049302:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 3.3:-79577427 | None:intergenic |
| TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | 3.3:-79576819 | None:intergenic |
| TACAATACCACCCATTTAAC+AGG | 0.292959 | 3.3:+79576808 | MS.gene049302:CDS |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 3.3:+79577988 | MS.gene049302:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 3.3:-79578294 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | 3.3:-79576708 | None:intergenic |
| CACCTGCAGCTTGCAGCTGC+TGG | 0.307481 | 3.3:+79577577 | MS.gene049302:CDS |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 3.3:-79578725 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | 3.3:+79578184 | MS.gene049302:CDS |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 3.3:-79577727 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 3.3:-79577680 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 3.3:+79578863 | MS.gene049302:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 3.3:-79577667 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | 3.3:-79576764 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 3.3:-79577661 | None:intergenic |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | 3.3:+79577228 | MS.gene049302:CDS |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | 3.3:+79577227 | MS.gene049302:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 3.3:+79578607 | MS.gene049302:CDS |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 3.3:+79578862 | MS.gene049302:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 3.3:-79578013 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 3.3:+79577533 | MS.gene049302:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 3.3:+79578877 | MS.gene049302:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 3.3:-79577958 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 3.3:-79578703 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 3.3:-79578409 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | 3.3:-79576753 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 3.3:+79578089 | MS.gene049302:CDS |
| TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | 3.3:-79576818 | None:intergenic |
| TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | 3.3:-79576799 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 3.3:-79577463 | None:intergenic |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 3.3:+79578577 | MS.gene049302:CDS |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 3.3:-79577628 | None:intergenic |
| ACAACACTGAGATATCTAAC+TGG | 0.465253 | 3.3:+79577323 | MS.gene049302:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 3.3:-79578468 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 3.3:+79578525 | MS.gene049302:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 3.3:+79578734 | MS.gene049302:CDS |
| GGCCAGCAGCTGCAAGCTGC+AGG | 0.469350 | 3.3:-79577579 | None:intergenic |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 3.3:+79577478 | MS.gene049302:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 3.3:-79578357 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 3.3:-79578702 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 3.3:-79578558 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 3.3:-79577532 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 3.3:+79577523 | MS.gene049302:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 3.3:+79577469 | MS.gene049302:CDS |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 3.3:+79578590 | MS.gene049302:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 3.3:+79578024 | MS.gene049302:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 3.3:-79577472 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 3.3:+79577676 | MS.gene049302:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 3.3:-79577763 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | 3.3:-79578380 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 3.3:-79578921 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | 3.3:-79578425 | None:intergenic |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 3.3:-79577600 | None:intergenic |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 3.3:-79578770 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | 3.3:+79578442 | MS.gene049302:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | 3.3:-79575236 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 3.3:+79578365 | MS.gene049302:CDS |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 3.3:+79578190 | MS.gene049302:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 3.3:-79577790 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 3.3:+79577413 | MS.gene049302:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 3.3:+79578841 | MS.gene049302:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 3.3:+79578800 | MS.gene049302:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 3.3:-79577608 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 3.3:+79578408 | MS.gene049302:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | 3.3:+79578247 | MS.gene049302:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | 3.3:+79578433 | MS.gene049302:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | 3.3:+79578777 | MS.gene049302:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 3.3:-79577650 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 3.3:+79578291 | MS.gene049302:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 3.3:-79578555 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 3.3:+79577695 | MS.gene049302:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 3.3:+79578099 | MS.gene049302:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 3.3:+79578739 | MS.gene049302:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 3.3:+79578107 | MS.gene049302:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | 3.3:+79576636 | MS.gene049302:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 3.3:+79577200 | MS.gene049302:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | 3.3:-79578059 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 3.3:-79577481 | None:intergenic |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 3.3:+79578400 | MS.gene049302:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 3.3:+79578725 | MS.gene049302:CDS |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | 3.3:-79576773 | None:intergenic |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 3.3:+79577598 | MS.gene049302:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 3.3:-79577471 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | 3.3:-79576691 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 3.3:+79578740 | MS.gene049302:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 3.3:+79577928 | MS.gene049302:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 3.3:+79577784 | MS.gene049302:CDS |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | 3.3:+79578784 | MS.gene049302:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 3.3:+79577685 | MS.gene049302:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 3.3:+79578399 | MS.gene049302:CDS |
| ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | 3.3:+79576821 | MS.gene049302:CDS |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | 3.3:+79578778 | MS.gene049302:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 3.3:-79577968 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 3.3:+79578396 | MS.gene049302:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 3.3:+79577187 | MS.gene049302:intron |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | 3.3:-79578931 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 3.3:+79577393 | MS.gene049302:CDS |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 3.3:-79578940 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 3.3:-79577496 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | 3.3:-79578930 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 3.3:-79578535 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 3.3:+79577392 | MS.gene049302:CDS |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | 3.3:+79577423 | MS.gene049302:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 3.3:+79578864 | MS.gene049302:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 3.3:+79578084 | MS.gene049302:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 3.3:+79578069 | MS.gene049302:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 3.3:+79577184 | MS.gene049302:intron |
| TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | 3.3:-79576789 | None:intergenic |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | 3.3:+79578436 | MS.gene049302:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 3.3:+79578409 | MS.gene049302:CDS |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | 3.3:-79576770 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | 3.3:+79577229 | MS.gene049302:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 3.3:+79578661 | MS.gene049302:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 3.3:+79578665 | MS.gene049302:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 3.3:+79578401 | MS.gene049302:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 3.3:+79578100 | MS.gene049302:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 3.3:+79578103 | MS.gene049302:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 3.3:+79578856 | MS.gene049302:CDS |
| ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | 3.3:-79576815 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | 3.3:-79577627 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 3.3:+79577778 | MS.gene049302:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 3.3:-79577365 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 3.3:-79578594 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | 3.3:-79577217 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | 3.3:-79575206 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | 3.3:-79578927 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 3.3:+79578658 | MS.gene049302:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 3.3:+79578755 | MS.gene049302:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTCATATATAAC+GGG | + | chr3.3:79577048-79577067 | MS.gene049302:intron | 10.0% |
| !! | AAAAAAAAAATCATGAAACT+TGG | + | chr3.3:79576914-79576933 | MS.gene049302:intron | 15.0% |
| !! | AAAAAAAAATCATGAAACTT+GGG | + | chr3.3:79576915-79576934 | MS.gene049302:intron | 15.0% |
| !! | AAAGAAAAAAATGAATTTCA+AGG | + | chr3.3:79577280-79577299 | MS.gene049302:CDS | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | + | chr3.3:79575822-79575841 | MS.gene049302:intron | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | + | chr3.3:79578433-79578452 | MS.gene049302:CDS | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | - | chr3.3:79575288-79575307 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | - | chr3.3:79576326-79576345 | None:intergenic | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | - | chr3.3:79575890-79575909 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | - | chr3.3:79575720-79575739 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | - | chr3.3:79575773-79575792 | None:intergenic | 15.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | - | chr3.3:79576565-79576584 | None:intergenic | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | + | chr3.3:79576229-79576248 | MS.gene049302:intron | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | - | chr3.3:79575257-79575276 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | + | chr3.3:79575304-79575323 | MS.gene049302:intron | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | - | chr3.3:79577875-79577894 | None:intergenic | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | + | chr3.3:79575786-79575805 | MS.gene049302:intron | 20.0% |
| !! | TAATCTCGATATTAATTCAT+AGG | - | chr3.3:79577031-79577050 | None:intergenic | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | + | chr3.3:79575582-79575601 | MS.gene049302:intron | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | - | chr3.3:79575378-79575397 | None:intergenic | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | + | chr3.3:79575779-79575798 | MS.gene049302:intron | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | + | chr3.3:79575374-79575393 | MS.gene049302:intron | 20.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | + | chr3.3:79578166-79578185 | MS.gene049302:CDS | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | + | chr3.3:79577286-79577305 | MS.gene049302:CDS | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | + | chr3.3:79575438-79575457 | MS.gene049302:intron | 25.0% |
| ! | AATCCTGATTCAATTCAAAT+AGG | + | chr3.3:79576984-79577003 | MS.gene049302:intron | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | + | chr3.3:79576608-79576627 | MS.gene049302:intron | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | - | chr3.3:79578428-79578447 | None:intergenic | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | + | chr3.3:79576877-79576896 | MS.gene049302:intron | 25.0% |
| ! | ATCCTGATTCAATTCAAATA+GGG | + | chr3.3:79576985-79577004 | MS.gene049302:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | + | chr3.3:79577227-79577246 | MS.gene049302:CDS | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | + | chr3.3:79576636-79576655 | MS.gene049302:CDS | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | + | chr3.3:79578436-79578455 | MS.gene049302:CDS | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | - | chr3.3:79576000-79576019 | None:intergenic | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | + | chr3.3:79575392-79575411 | MS.gene049302:intron | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | - | chr3.3:79576482-79576501 | None:intergenic | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | + | chr3.3:79578267-79578286 | MS.gene049302:CDS | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | + | chr3.3:79577228-79577247 | MS.gene049302:CDS | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | + | chr3.3:79578268-79578287 | MS.gene049302:CDS | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | + | chr3.3:79576143-79576162 | MS.gene049302:intron | 25.0% |
| !!! | TTTTTTCGATTTCTAAATCC+AGG | - | chr3.3:79576959-79576978 | None:intergenic | 25.0% |
| AAATAGCAAACTACACAGAT+GGG | + | chr3.3:79578778-79578797 | MS.gene049302:CDS | 30.0% | |
| AATGGAATTACAGCAAATTC+AGG | + | chr3.3:79578184-79578203 | MS.gene049302:CDS | 30.0% | |
| AGAAAATTAAGGAACTGACA+TGG | - | chr3.3:79575246-79575265 | None:intergenic | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | - | chr3.3:79578705-79578724 | None:intergenic | 30.0% | |
| CAAACTCCAACATTTATGTA+AGG | + | chr3.3:79576473-79576492 | MS.gene049302:intron | 30.0% | |
| CAAATGAAAACCATGTTGTT+TGG | + | chr3.3:79578525-79578544 | MS.gene049302:CDS | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | + | chr3.3:79576876-79576895 | MS.gene049302:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | - | chr3.3:79577124-79577143 | None:intergenic | 30.0% | |
| GTATAGATAATCTTTGTGAC+TGG | + | chr3.3:79578841-79578860 | MS.gene049302:CDS | 30.0% | |
| GTATGTCTTAGATAGCTATA+AGG | - | chr3.3:79575920-79575939 | None:intergenic | 30.0% | |
| TAAGAACGTTTAATACGTTG+AGG | - | chr3.3:79575564-79575583 | None:intergenic | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | + | chr3.3:79576551-79576570 | MS.gene049302:intron | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | + | chr3.3:79576878-79576897 | MS.gene049302:intron | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | - | chr3.3:79576101-79576120 | None:intergenic | 30.0% | |
| TCCTGATTCAATTCAAATAG+GGG | + | chr3.3:79576986-79577005 | MS.gene049302:intron | 30.0% | |
| TCTCATCAACAAGTATTACT+AGG | - | chr3.3:79578062-79578081 | None:intergenic | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | - | chr3.3:79578383-79578402 | None:intergenic | 30.0% | |
| TGCATCTTAAGTTTCTATCT+TGG | - | chr3.3:79576711-79576730 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | - | chr3.3:79578471-79578490 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | + | chr3.3:79576036-79576055 | MS.gene049302:intron | 30.0% |
| ! | ACGTATATTTTGCATGATGT+TGG | + | chr3.3:79576429-79576448 | MS.gene049302:intron | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | + | chr3.3:79576037-79576056 | MS.gene049302:intron | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | - | chr3.3:79577653-79577672 | None:intergenic | 30.0% |
| ! | GCATTTAGACTCTTTAGAAA+AGG | - | chr3.3:79575496-79575515 | None:intergenic | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | - | chr3.3:79577631-79577650 | None:intergenic | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | - | chr3.3:79577630-79577649 | None:intergenic | 30.0% |
| ! | TCAAATGTAGATACTGATTG+GGG | + | chr3.3:79577229-79577248 | MS.gene049302:CDS | 30.0% |
| ! | TCTTGGATAGATAAGTTGAA+AGG | - | chr3.3:79576694-79576713 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | + | chr3.3:79577895-79577914 | MS.gene049302:intron | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | + | chr3.3:79578479-79578498 | MS.gene049302:CDS | 30.0% |
| !! | TGAACTTCTTGAAGCATTTT+TGG | + | chr3.3:79578478-79578497 | MS.gene049302:CDS | 30.0% |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | - | chr3.3:79578159-79578178 | None:intergenic | 30.0% |
| AAATATTTACATGGTGGCAC+AGG | + | chr3.3:79578442-79578461 | MS.gene049302:CDS | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | + | chr3.3:79576514-79576533 | MS.gene049302:intron | 35.0% | |
| AATCATGAAACTTGGGAAAC+TGG | + | chr3.3:79576922-79576941 | MS.gene049302:intron | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | + | chr3.3:79577918-79577937 | MS.gene049302:intron | 35.0% | |
| AATGAGATTGAGTCCTACAA+TGG | + | chr3.3:79578396-79578415 | MS.gene049302:CDS | 35.0% | |
| ACAACACTGAGATATCTAAC+TGG | + | chr3.3:79577323-79577342 | MS.gene049302:CDS | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | + | chr3.3:79577134-79577153 | MS.gene049302:intron | 35.0% | |
| AGTAGATGAGCAGCATTATT+AGG | + | chr3.3:79576298-79576317 | MS.gene049302:intron | 35.0% | |
| ATATGATACGGATCACGATT+GGG | - | chr3.3:79576077-79576096 | None:intergenic | 35.0% | |
| ATCATGAAACTTGGGAAACT+GGG | + | chr3.3:79576923-79576942 | MS.gene049302:intron | 35.0% | |
| ATGCAGATTTACTCATACTC+AGG | + | chr3.3:79578247-79578266 | MS.gene049302:CDS | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | + | chr3.3:79576879-79576898 | MS.gene049302:intron | 35.0% | |
| CCTGATTCAATTCAAATAGG+GGG | + | chr3.3:79576987-79577006 | MS.gene049302:intron | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | + | chr3.3:79578564-79578583 | MS.gene049302:CDS | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | + | chr3.3:79577135-79577154 | MS.gene049302:intron | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | + | chr3.3:79578777-79578796 | MS.gene049302:CDS | 35.0% | |
| GCAAAACTGTTGTAAAAGCT+TGG | - | chr3.3:79578706-79578725 | None:intergenic | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | - | chr3.3:79576776-79576795 | None:intergenic | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | + | chr3.3:79576299-79576318 | MS.gene049302:intron | 35.0% | |
| GTCATTTAGAAAAGACAGGA+AGG | - | chr3.3:79576102-79576121 | None:intergenic | 35.0% | |
| GTTAAGCTACCTTGTAAGAA+TGG | + | chr3.3:79577523-79577542 | MS.gene049302:CDS | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | - | chr3.3:79578943-79578962 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | + | chr3.3:79576808-79576827 | MS.gene049302:CDS | 35.0% | |
| TAGTGAAGCACATAGAGAAT+TGG | - | chr3.3:79578561-79578580 | None:intergenic | 35.0% | |
| TATATGATACGGATCACGAT+TGG | - | chr3.3:79576078-79576097 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | + | chr3.3:79577988-79578007 | MS.gene049302:CDS | 35.0% | |
| TCTACATTTGATATGTACCG+AGG | - | chr3.3:79577220-79577239 | None:intergenic | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | - | chr3.3:79577730-79577749 | None:intergenic | 35.0% | |
| TCTTTGCAGGTAAACAGATT+TGG | - | chr3.3:79577670-79577689 | None:intergenic | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | - | chr3.3:79577971-79577990 | None:intergenic | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | + | chr3.3:79577136-79577155 | MS.gene049302:intron | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | + | chr3.3:79577676-79577695 | MS.gene049302:CDS | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | + | chr3.3:79578577-79578596 | MS.gene049302:CDS | 35.0% |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | + | chr3.3:79577173-79577192 | MS.gene049302:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | + | chr3.3:79577182-79577201 | MS.gene049302:intron | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | - | chr3.3:79577664-79577683 | None:intergenic | 35.0% |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | - | chr3.3:79576106-79576125 | None:intergenic | 35.0% |
| ! | GGTAATGAAGAGCACATAAA+TGG | - | chr3.3:79577632-79577651 | None:intergenic | 35.0% |
| ! | TCATTTTCAAACCACATGAG+GGG | + | chr3.3:79576038-79576057 | MS.gene049302:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | + | chr3.3:79577183-79577202 | MS.gene049302:intron | 35.0% |
| !! | AGATTTTCTATTTGGGATGC+CGG | + | chr3.3:79578275-79578294 | MS.gene049302:CDS | 35.0% |
| !! | ATATCCAGAATGGATTGATG+AGG | + | chr3.3:79577423-79577442 | MS.gene049302:CDS | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | + | chr3.3:79578190-79578209 | MS.gene049302:CDS | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | + | chr3.3:79578326-79578345 | MS.gene049302:CDS | 35.0% |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | - | chr3.3:79578158-79578177 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | - | chr3.3:79578160-79578179 | None:intergenic | 35.0% |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | + | chr3.3:79578483-79578502 | MS.gene049302:CDS | 35.0% |
| AAAAAGAGTGGCATCGTTAC+CGG | - | chr3.3:79578313-79578332 | None:intergenic | 40.0% | |
| AAAGAACTAGTTGGACGTGA+AGG | + | chr3.3:79577685-79577704 | MS.gene049302:CDS | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | + | chr3.3:79575510-79575529 | MS.gene049302:intron | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | - | chr3.3:79578934-79578953 | None:intergenic | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | - | chr3.3:79577827-79577846 | None:intergenic | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | + | chr3.3:79575983-79576002 | MS.gene049302:intron | 40.0% | |
| AGAGATGACATGGTAACTGT+GGG | - | chr3.3:79578933-79578952 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | + | chr3.3:79578400-79578419 | MS.gene049302:CDS | 40.0% | |
| AGCTGAAATGTGCAGTTTGA+TGG | - | chr3.3:79578360-79578379 | None:intergenic | 40.0% | |
| AGGAAGCTTAGCAAGATACT+AGG | + | chr3.3:79576163-79576182 | MS.gene049302:intron | 40.0% | |
| ATCAGTGGATATCACAGAAG+CGG | + | chr3.3:79578084-79578103 | MS.gene049302:CDS | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | - | chr3.3:79577841-79577860 | None:intergenic | 40.0% | |
| ATTGTTGCATAGGCTTCTCT+TGG | - | chr3.3:79577961-79577980 | None:intergenic | 40.0% | |
| CAGTTAGCTCCATTCTTACA+AGG | - | chr3.3:79577535-79577554 | None:intergenic | 40.0% | |
| CCCCCTATTTGAATTGAATC+AGG | - | chr3.3:79576990-79577009 | None:intergenic | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | - | chr3.3:79576288-79576307 | None:intergenic | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | + | chr3.3:79577533-79577552 | MS.gene049302:CDS | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | + | chr3.3:79577748-79577767 | MS.gene049302:CDS | 40.0% | |
| GACACCAGAGTTAAAAAGAG+TGG | - | chr3.3:79578325-79578344 | None:intergenic | 40.0% | |
| GAGGAACATTACAAAAGTGG+CGG | - | chr3.3:79576773-79576792 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | + | chr3.3:79578024-79578043 | MS.gene049302:CDS | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | - | chr3.3:79577611-79577630 | None:intergenic | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | - | chr3.3:79575239-79575258 | None:intergenic | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | - | chr3.3:79577368-79577387 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | + | chr3.3:79578607-79578626 | MS.gene049302:CDS | 40.0% | |
| TCATGAAACTTGGGAAACTG+GGG | + | chr3.3:79576924-79576943 | MS.gene049302:intron | 40.0% | |
| TCTAGTGCAAGGTATGTTTC+TGG | + | chr3.3:79576832-79576851 | MS.gene049302:intron | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | - | chr3.3:79577430-79577449 | None:intergenic | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | - | chr3.3:79578558-79578577 | None:intergenic | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | - | chr3.3:79576821-79576840 | None:intergenic | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | - | chr3.3:79576756-79576775 | None:intergenic | 40.0% | |
| TGGGTGGTATTGTAAATCTC+TGG | - | chr3.3:79576802-79576821 | None:intergenic | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | - | chr3.3:79577603-79577622 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | - | chr3.3:79576822-79576841 | None:intergenic | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | + | chr3.3:79577695-79577714 | MS.gene049302:CDS | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | + | chr3.3:79576437-79576456 | MS.gene049302:intron | 40.0% | |
| TTTGTGAACAGGTGGATATG+GGG | + | chr3.3:79577184-79577203 | MS.gene049302:intron | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | + | chr3.3:79577928-79577947 | MS.gene049302:intron | 40.0% |
| ! | ATGAGATTGAGTCTTGTACC+AGG | - | chr3.3:79577499-79577518 | None:intergenic | 40.0% |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | + | chr3.3:79576821-79576840 | MS.gene049302:CDS | 40.0% |
| ! | CATTACAAAAGTGGCGGAAA+TGG | - | chr3.3:79576767-79576786 | None:intergenic | 40.0% |
| ! | CTTGTTGATGAGACAATCAG+TGG | + | chr3.3:79578069-79578088 | MS.gene049302:CDS | 40.0% |
| ! | GACAGGAAGGGTATATGATA+CGG | - | chr3.3:79576089-79576108 | None:intergenic | 40.0% |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | - | chr3.3:79576792-79576811 | None:intergenic | 40.0% |
| ! | TGTGCAATTTTGTGAACAGG+TGG | + | chr3.3:79577176-79577195 | MS.gene049302:intron | 40.0% |
| !! | GATGCCACTCTTTTTAACTC+TGG | + | chr3.3:79578318-79578337 | MS.gene049302:CDS | 40.0% |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | - | chr3.3:79578773-79578792 | None:intergenic | 40.0% |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | + | chr3.3:79578329-79578348 | MS.gene049302:CDS | 40.0% |
| AACATACCTCTGCCTCTCAT+AGG | - | chr3.3:79577793-79577812 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | - | chr3.3:79576818-79576837 | None:intergenic | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | + | chr3.3:79577392-79577411 | MS.gene049302:CDS | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | + | chr3.3:79578661-79578680 | MS.gene049302:CDS | 45.0% | |
| CATGAAACTTGGGAAACTGG+GGG | + | chr3.3:79576925-79576944 | MS.gene049302:intron | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | - | chr3.3:79577842-79577861 | None:intergenic | 45.0% | |
| CCTGTTGAAGTCAAAGCAGA+AGG | + | chr3.3:79578725-79578744 | MS.gene049302:CDS | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | + | chr3.3:79577778-79577797 | MS.gene049302:CDS | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | + | chr3.3:79578590-79578609 | MS.gene049302:CDS | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | + | chr3.3:79578399-79578418 | MS.gene049302:CDS | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | + | chr3.3:79578401-79578420 | MS.gene049302:CDS | 45.0% | |
| GCAAGTTCACATGATCCAAC+TGG | - | chr3.3:79577766-79577785 | None:intergenic | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | + | chr3.3:79577413-79577432 | MS.gene049302:CDS | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | + | chr3.3:79578658-79578677 | MS.gene049302:CDS | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | - | chr3.3:79578597-79578616 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | - | chr3.3:79578016-79578035 | None:intergenic | 45.0% | |
| TGAAGCCATGGTTATGCTTC+AGG | + | chr3.3:79578589-79578608 | MS.gene049302:CDS | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | + | chr3.3:79577393-79577412 | MS.gene049302:CDS | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | + | chr3.3:79578089-79578108 | MS.gene049302:CDS | 45.0% | |
| TTACCGGTAGCAGTGATTTC+CGG | - | chr3.3:79578297-79578316 | None:intergenic | 45.0% | |
| ! | AAAAGCATGTTGCGGCATTG+GGG | + | chr3.3:79578864-79578883 | MS.gene049302:CDS | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | - | chr3.3:79577683-79577702 | None:intergenic | 45.0% |
| ! | AGTCTAGCTTCAACAGAACG+AGG | - | chr3.3:79575209-79575228 | None:intergenic | 45.0% |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | - | chr3.3:79577474-79577493 | None:intergenic | 45.0% |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | - | chr3.3:79578728-79578747 | None:intergenic | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | + | chr3.3:79578863-79578882 | MS.gene049302:CDS | 45.0% |
| ! | GCACTGGCGAATCAAAGTTA+AGG | + | chr3.3:79578800-79578819 | MS.gene049302:CDS | 45.0% |
| ! | GTGACTGGAAAAGCATGTTG+CGG | + | chr3.3:79578856-79578875 | MS.gene049302:CDS | 45.0% |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | + | chr3.3:79578491-79578510 | MS.gene049302:CDS | 45.0% |
| !!! | ATTAAAATTTTCATATATAA+CGG | + | chr3.3:79577047-79577066 | MS.gene049302:intron | 5.0% |
| !!! | TTTATTTAAGTTTTTATATA+TGG | - | chr3.3:79575724-79575743 | None:intergenic | 5.0% |
| AAACTGGGGGACTGAAATCC+TGG | + | chr3.3:79576938-79576957 | MS.gene049302:intron | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | + | chr3.3:79578291-79578310 | MS.gene049302:CDS | 50.0% | |
| CAAACTACACAGATGGGCAC+TGG | + | chr3.3:79578784-79578803 | MS.gene049302:CDS | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | + | chr3.3:79578365-79578384 | MS.gene049302:CDS | 50.0% | |
| CTTGGTAGAGAAGGGCAAAC+AGG | - | chr3.3:79577466-79577485 | None:intergenic | 50.0% | |
| GATGACATGGTAACTGTGGG+AGG | - | chr3.3:79578930-79578949 | None:intergenic | 50.0% | |
| GGCCTTGCTACCTCATTCAA+AGG | + | chr3.3:79577598-79577617 | MS.gene049302:CDS | 50.0% | |
| TCACGATTGGGACTGTATGC+AGG | - | chr3.3:79576065-79576084 | None:intergenic | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | + | chr3.3:79577469-79577488 | MS.gene049302:CDS | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | - | chr3.3:79578538-79578557 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | + | chr3.3:79578665-79578684 | MS.gene049302:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | - | chr3.3:79578924-79578943 | None:intergenic | 50.0% |
| ! | GATCCGAGACTTGGTAGAGA+AGG | - | chr3.3:79577475-79577494 | None:intergenic | 50.0% |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | + | chr3.3:79578862-79578881 | MS.gene049302:CDS | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | + | chr3.3:79578734-79578753 | MS.gene049302:CDS | 50.0% |
| !! | GGATGCAGACTTGATAACGC+TGG | - | chr3.3:79576267-79576286 | None:intergenic | 50.0% |
| CCTACAATGGAGGGGACCAA+GGG | + | chr3.3:79578409-79578428 | MS.gene049302:CDS | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | + | chr3.3:79577478-79577497 | MS.gene049302:CDS | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | + | chr3.3:79577784-79577803 | MS.gene049302:CDS | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | - | chr3.3:79577484-79577503 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | + | chr3.3:79577187-79577206 | MS.gene049302:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | + | chr3.3:79577200-79577219 | MS.gene049302:CDS | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | + | chr3.3:79578408-79578427 | MS.gene049302:CDS | 55.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | - | chr3.3:79576052-79576071 | None:intergenic | 55.0% | |
| TTTGGAAGCAGCAGGGTGGA+AGG | + | chr3.3:79578107-79578126 | MS.gene049302:CDS | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | + | chr3.3:79578099-79578118 | MS.gene049302:CDS | 55.0% |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | + | chr3.3:79578739-79578758 | MS.gene049302:CDS | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | + | chr3.3:79578100-79578119 | MS.gene049302:CDS | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | + | chr3.3:79578740-79578759 | MS.gene049302:CDS | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | + | chr3.3:79578877-79578896 | MS.gene049302:CDS | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | - | chr3.3:79578412-79578431 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | + | chr3.3:79578755-79578774 | MS.gene049302:CDS | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | + | chr3.3:79577577-79577596 | MS.gene049302:CDS | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | + | chr3.3:79578103-79578122 | MS.gene049302:CDS | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | - | chr3.3:79577582-79577601 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79575194 | 79578965 | 79575194 | ID=MS.gene049302 |
| chr3.3 | mRNA | 79575194 | 79578965 | 79575194 | ID=MS.gene049302.t1;Parent=MS.gene049302 |
| chr3.3 | exon | 79575194 | 79575246 | 79575194 | ID=MS.gene049302.t1.exon1;Parent=MS.gene049302.t1 |
| chr3.3 | CDS | 79575194 | 79575246 | 79575194 | ID=cds.MS.gene049302.t1;Parent=MS.gene049302.t1 |
| chr3.3 | exon | 79576636 | 79576842 | 79576636 | ID=MS.gene049302.t1.exon2;Parent=MS.gene049302.t1 |
| chr3.3 | CDS | 79576636 | 79576842 | 79576636 | ID=cds.MS.gene049302.t1;Parent=MS.gene049302.t1 |
| chr3.3 | exon | 79577195 | 79577805 | 79577195 | ID=MS.gene049302.t1.exon3;Parent=MS.gene049302.t1 |
| chr3.3 | CDS | 79577195 | 79577805 | 79577195 | ID=cds.MS.gene049302.t1;Parent=MS.gene049302.t1 |
| chr3.3 | exon | 79577935 | 79578965 | 79577935 | ID=MS.gene049302.t1.exon4;Parent=MS.gene049302.t1 |
| chr3.3 | CDS | 79577935 | 79578965 | 79577935 | ID=cds.MS.gene049302.t1;Parent=MS.gene049302.t1 |
| Gene Sequence |
| Protein sequence |
