Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21439.t1 | XP_003611533.1 | 80.9 | 236 | 25 | 4 | 2 | 232 | 89 | 309 | 3.00E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21439.t1 | Q9FKL2 | 34.9 | 241 | 111 | 12 | 2 | 207 | 89 | 318 | 2.8e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21439.t1 | G7K165 | 80.9 | 236 | 25 | 4 | 2 | 232 | 89 | 309 | 2.2e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21439.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055251 | MS.gene21439 | 0.801471 | 8.86E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene21439 | 0.806621 | 7.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21439.t1 | MTR_5g014990 | 87.712 | 236 | 9 | 4 | 2 | 232 | 89 | 309 | 8.40e-137 | 386 |
| MS.gene21439.t1 | MTR_4g097570 | 40.336 | 238 | 95 | 13 | 2 | 229 | 89 | 289 | 7.68e-24 | 97.1 |
| MS.gene21439.t1 | MTR_4g097570 | 40.336 | 238 | 95 | 13 | 2 | 229 | 90 | 290 | 9.02e-24 | 96.7 |
| MS.gene21439.t1 | MTR_1g017140 | 59.259 | 81 | 28 | 2 | 2 | 79 | 89 | 167 | 2.11e-20 | 88.6 |
| MS.gene21439.t1 | MTR_3g103570 | 47.059 | 85 | 43 | 1 | 2 | 86 | 89 | 171 | 5.02e-18 | 82.0 |
| MS.gene21439.t1 | MTR_4g057635 | 84.848 | 33 | 5 | 0 | 2 | 34 | 89 | 121 | 2.16e-12 | 65.9 |
| MS.gene21439.t1 | MTR_3g461490 | 80.645 | 31 | 6 | 0 | 2 | 32 | 88 | 118 | 4.29e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21439.t1 | AT5G65790 | 57.647 | 85 | 21 | 4 | 2 | 78 | 89 | 166 | 1.61e-17 | 80.9 |
| MS.gene21439.t1 | AT3G49690 | 32.159 | 227 | 117 | 9 | 2 | 203 | 89 | 303 | 1.64e-16 | 77.4 |
| MS.gene21439.t1 | AT5G57620 | 85.714 | 35 | 5 | 0 | 2 | 36 | 89 | 123 | 2.06e-14 | 71.6 |
| MS.gene21439.t1 | AT4G37780 | 72.727 | 44 | 12 | 0 | 2 | 45 | 89 | 132 | 2.78e-14 | 70.9 |
| MS.gene21439.t1 | AT5G23000 | 45.455 | 66 | 36 | 0 | 2 | 67 | 89 | 154 | 3.43e-12 | 65.1 |
| MS.gene21439.t1 | AT5G56110 | 83.871 | 31 | 5 | 0 | 2 | 32 | 88 | 118 | 1.58e-11 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGAGTCTAGGTATTT+TGG | 0.172232 | 5.1:+7704704 | MS.gene21439:CDS |
| GTATTACTTTCCATGGAAAA+AGG | 0.187062 | 5.1:-7704401 | None:intergenic |
| ATATGAGTTCAGCTCCTTAT+TGG | 0.208038 | 5.1:+7704255 | MS.gene21439:CDS |
| AGAACAATTGATGGTTTATA+TGG | 0.249714 | 5.1:+7704536 | MS.gene21439:CDS |
| GTTCATATCATAATCAATTA+TGG | 0.256120 | 5.1:-7704321 | None:intergenic |
| TTGGAATGCAAATGCAATAA+AGG | 0.260472 | 5.1:+7704723 | MS.gene21439:CDS |
| GAATTTGATGGTGGCGGCTT+CGG | 0.274867 | 5.1:+7704223 | MS.gene21439:CDS |
| AATTTGATGGTGGCGGCTTC+GGG | 0.281895 | 5.1:+7704224 | MS.gene21439:CDS |
| TTCTATCCATTATTTGTTGT+TGG | 0.313622 | 5.1:-7704517 | None:intergenic |
| TGTGAACCAACAACAAATAA+TGG | 0.320313 | 5.1:+7704511 | MS.gene21439:CDS |
| TTGGGGAGATATGAACTCTT+TGG | 0.325613 | 5.1:+7704625 | MS.gene21439:CDS |
| ATTATGGATGAATTTGAAAC+TGG | 0.368691 | 5.1:-7704305 | None:intergenic |
| GAATACTCTGCAGGCCAATA+AGG | 0.382763 | 5.1:-7704269 | None:intergenic |
| GGAATGTTCATTATGCTTGT+TGG | 0.391809 | 5.1:-7704374 | None:intergenic |
| CTTGTTTCATGTTGCTAACT+CGG | 0.393201 | 5.1:-7704178 | None:intergenic |
| CTTGTGGAATTGATCCTTGT+TGG | 0.404625 | 5.1:-7704670 | None:intergenic |
| CAGCCATCACATATATTTCA+AGG | 0.414160 | 5.1:+7704449 | MS.gene21439:CDS |
| ATAATGGATAGAACAATTGA+TGG | 0.418211 | 5.1:+7704527 | MS.gene21439:CDS |
| GCTCCTTCCTTTGTTTCCCA+AGG | 0.424838 | 5.1:-7704133 | None:intergenic |
| TTCAACAGAAAGCACTAGTT+GGG | 0.432311 | 5.1:+7704607 | MS.gene21439:CDS |
| TGTAATTGTATTACTTTCCA+TGG | 0.441381 | 5.1:-7704408 | None:intergenic |
| AATTGATGGTTTATATGGAA+TGG | 0.453337 | 5.1:+7704541 | MS.gene21439:CDS |
| GGTTGAAGAAGAAGCTCCTT+GGG | 0.469664 | 5.1:+7704117 | MS.gene21439:CDS |
| CTTCAACAGAAAGCACTAGT+TGG | 0.476988 | 5.1:+7704606 | MS.gene21439:CDS |
| AGAAATAAATCAGAATTTGA+TGG | 0.487396 | 5.1:+7704211 | MS.gene21439:CDS |
| ATAATGATATAAAGAACTAC+TGG | 0.487898 | 5.1:+7704087 | MS.gene21439:CDS |
| ACAAGCTCACTTAAATCCCT+TGG | 0.501931 | 5.1:-7704485 | None:intergenic |
| AAATCAGAATTTGATGGTGG+CGG | 0.512314 | 5.1:+7704217 | MS.gene21439:CDS |
| AGGTTGAAGAAGAAGCTCCT+TGG | 0.531276 | 5.1:+7704116 | MS.gene21439:CDS |
| TCTTTGGTTTATGACTATGA+AGG | 0.535991 | 5.1:+7704641 | MS.gene21439:CDS |
| ATATCATTATCCGTTCGTCC+TGG | 0.550639 | 5.1:-7704074 | None:intergenic |
| GGATGAACAGAATACTCTGC+AGG | 0.563118 | 5.1:-7704278 | None:intergenic |
| TAAAGAACTACTGGAACACT+AGG | 0.569888 | 5.1:+7704096 | MS.gene21439:CDS |
| TCAAAAGCAATAGCATCTTG+TGG | 0.572148 | 5.1:-7704686 | None:intergenic |
| ATCATAGCAGCACAATTACC+AGG | 0.572301 | 5.1:+7704056 | MS.gene21439:CDS |
| AGCCATCACATATATTTCAA+GGG | 0.573988 | 5.1:+7704450 | MS.gene21439:CDS |
| AGAAGCTCCTTGGGAAACAA+AGG | 0.580754 | 5.1:+7704126 | MS.gene21439:CDS |
| TATGAAGGTTGTTGCCAACA+AGG | 0.584761 | 5.1:+7704656 | MS.gene21439:CDS |
| CTTGAAATATATGTGATGGC+TGG | 0.591282 | 5.1:-7704448 | None:intergenic |
| AGTAATACAATTACAAACAA+TGG | 0.598309 | 5.1:+7704416 | MS.gene21439:CDS |
| TCTATTGACATGAGCAATGG+TGG | 0.599559 | 5.1:+7704566 | MS.gene21439:CDS |
| AGCACAATTACCAGGACGAA+CGG | 0.615114 | 5.1:+7704064 | MS.gene21439:CDS |
| AATACAATTACAAACAATGG+TGG | 0.622206 | 5.1:+7704419 | MS.gene21439:CDS |
| AACCCTTGAAATATATGTGA+TGG | 0.624141 | 5.1:-7704452 | None:intergenic |
| GATGAATTTGAAACTGGCAT+AGG | 0.626545 | 5.1:-7704299 | None:intergenic |
| GCTCCTTGGGAAACAAAGGA+AGG | 0.636745 | 5.1:+7704130 | MS.gene21439:CDS |
| AATAAATCAGAATTTGATGG+TGG | 0.642797 | 5.1:+7704214 | MS.gene21439:CDS |
| GAATCTATTGACATGAGCAA+TGG | 0.644932 | 5.1:+7704563 | MS.gene21439:CDS |
| TGGATGAAGCAAGCTTGTGA+AGG | 0.667571 | 5.1:-7704354 | None:intergenic |
| TCAACAGAAAGCACTAGTTG+GGG | 0.700480 | 5.1:+7704608 | MS.gene21439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTATTTTTAAAAAAT+AGG | - | chr5.1:7702862-7702881 | None:intergenic | 0.0% |
| !! | ATTAAATTAATCATTATGTA+TGG | - | chr5.1:7703581-7703600 | None:intergenic | 10.0% |
| !!! | CTAATTAATTAATAAGTTTT+AGG | - | chr5.1:7703890-7703909 | None:intergenic | 10.0% |
| !! | ATATATATATAAAGAAGAGT+GGG | - | chr5.1:7703265-7703284 | None:intergenic | 15.0% |
| !! | TATATATATATAAAGAAGAG+TGG | - | chr5.1:7703266-7703285 | None:intergenic | 15.0% |
| !! | TTACTTTATGACTAAATAAA+TGG | - | chr5.1:7703163-7703182 | None:intergenic | 15.0% |
| !!! | AATTTATTTGTTTATTTCTG+TGG | + | chr5.1:7703648-7703667 | MS.gene21439:intron | 15.0% |
| !! | AGAAATAAATCAGAATTTGA+TGG | + | chr5.1:7704211-7704230 | MS.gene21439:CDS | 20.0% |
| !! | AGTAATACAATTACAAACAA+TGG | + | chr5.1:7704416-7704435 | MS.gene21439:CDS | 20.0% |
| !! | ATAATGATATAAAGAACTAC+TGG | + | chr5.1:7704087-7704106 | MS.gene21439:CDS | 20.0% |
| !! | GACTAAATAAATGGATAAAT+TGG | - | chr5.1:7703154-7703173 | None:intergenic | 20.0% |
| !! | GTTCATATCATAATCAATTA+TGG | - | chr5.1:7704324-7704343 | None:intergenic | 20.0% |
| !! | TTATCATCAACTCATAATAA+AGG | + | chr5.1:7703314-7703333 | MS.gene21439:intron | 20.0% |
| !! | TTCTTTGAATATGTATATGT+AGG | + | chr5.1:7704027-7704046 | MS.gene21439:intron | 20.0% |
| !!! | AATGATATTTTGACAACTTT+TGG | + | chr5.1:7702952-7702971 | MS.gene21439:intron | 20.0% |
| !!! | GAGAAATTTGTTTTTGAAAA+AGG | - | chr5.1:7703207-7703226 | None:intergenic | 20.0% |
| ! | AAGTCTTACATAGAACAAAA+TGG | + | chr5.1:7703444-7703463 | MS.gene21439:intron | 25.0% |
| ! | AATAAATCAGAATTTGATGG+TGG | + | chr5.1:7704214-7704233 | MS.gene21439:CDS | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr5.1:7703049-7703068 | MS.gene21439:intron | 25.0% |
| ! | AATACAATTACAAACAATGG+TGG | + | chr5.1:7704419-7704438 | MS.gene21439:CDS | 25.0% |
| ! | AATTAGAGTCTACAAAGTTA+TGG | - | chr5.1:7703994-7704013 | None:intergenic | 25.0% |
| ! | AGAGATATGAATTATTGTTG+TGG | - | chr5.1:7702839-7702858 | None:intergenic | 25.0% |
| ! | ATATGAATTATTGTTGTGGA+TGG | - | chr5.1:7702835-7702854 | None:intergenic | 25.0% |
| ! | CATTACTCTTAGAAAAACAT+TGG | + | chr5.1:7703110-7703129 | MS.gene21439:intron | 25.0% |
| ! | CTTAGACCAAATATTAAACA+TGG | + | chr5.1:7703733-7703752 | MS.gene21439:intron | 25.0% |
| ! | TATGAATTATTGTTGTGGAT+GGG | - | chr5.1:7702834-7702853 | None:intergenic | 25.0% |
| ! | TATTACTTTCCATGGAAAAA+GGG | - | chr5.1:7704403-7704422 | None:intergenic | 25.0% |
| ! | TGTAATTGTATTACTTTCCA+TGG | - | chr5.1:7704411-7704430 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr5.1:7703037-7703056 | None:intergenic | 25.0% |
| ! | TTTGAATATGTATATGTAGG+TGG | + | chr5.1:7704030-7704049 | MS.gene21439:intron | 25.0% |
| !! | AATTGATGGTTTATATGGAA+TGG | + | chr5.1:7704541-7704560 | MS.gene21439:CDS | 25.0% |
| !! | AGAACAATTGATGGTTTATA+TGG | + | chr5.1:7704536-7704555 | MS.gene21439:CDS | 25.0% |
| !! | ATTATGGATGAATTTGAAAC+TGG | - | chr5.1:7704308-7704327 | None:intergenic | 25.0% |
| !!! | ATAATGGATAGAACAATTGA+TGG | + | chr5.1:7704527-7704546 | MS.gene21439:CDS | 25.0% |
| !!! | TTCTATCCATTATTTGTTGT+TGG | - | chr5.1:7704520-7704539 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr5.1:7703050-7703069 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGAAAAAGGTGTA+TGG | - | chr5.1:7703200-7703219 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr5.1:7703024-7703043 | None:intergenic | 30.0% | |
| AAAACTCATACCAACAAACA+TGG | + | chr5.1:7703350-7703369 | MS.gene21439:intron | 30.0% | |
| AAACTCATACCAACAAACAT+GGG | + | chr5.1:7703351-7703370 | MS.gene21439:intron | 30.0% | |
| AACCCTTGAAATATATGTGA+TGG | - | chr5.1:7704455-7704474 | None:intergenic | 30.0% | |
| AAGCCACCATGTTTAATATT+TGG | - | chr5.1:7703742-7703761 | None:intergenic | 30.0% | |
| AATAATGTCGTCTTCTTCTT+CGG | - | chr5.1:7703767-7703786 | None:intergenic | 30.0% | |
| AGACCAAATATTAAACATGG+TGG | + | chr5.1:7703736-7703755 | MS.gene21439:intron | 30.0% | |
| AGCCATCACATATATTTCAA+GGG | + | chr5.1:7704450-7704469 | MS.gene21439:CDS | 30.0% | |
| ATAATATAAGAGAGAGAGAG+AGG | + | chr5.1:7702873-7702892 | MS.gene21439:intron | 30.0% | |
| ATGAATTATTGTTGTGGATG+GGG | - | chr5.1:7702833-7702852 | None:intergenic | 30.0% | |
| ATTGAGATTCTAGACTAAGA+AGG | + | chr5.1:7702911-7702930 | MS.gene21439:intron | 30.0% | |
| CATCAACTCATAATAAAGGT+TGG | + | chr5.1:7703318-7703337 | MS.gene21439:intron | 30.0% | |
| GTATTACTTTCCATGGAAAA+AGG | - | chr5.1:7704404-7704423 | None:intergenic | 30.0% | |
| TACATAGAACAAAATGGTAC+TGG | + | chr5.1:7703450-7703469 | MS.gene21439:intron | 30.0% | |
| TATATATAAAGAAGAGTGGG+AGG | - | chr5.1:7703262-7703281 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr5.1:7703075-7703094 | MS.gene21439:intron | 30.0% | |
| TGTGAACCAACAACAAATAA+TGG | + | chr5.1:7704511-7704530 | MS.gene21439:CDS | 30.0% | |
| TTATTTCCAAGTAGATAGCT+CGG | - | chr5.1:7703948-7703967 | None:intergenic | 30.0% | |
| ! | AAGGGTTTGAAAATTTTCCA+AGG | + | chr5.1:7704468-7704487 | MS.gene21439:CDS | 30.0% |
| ! | AGGGTTTGAAAATTTTCCAA+GGG | + | chr5.1:7704469-7704488 | MS.gene21439:CDS | 30.0% |
| ! | TCTTTGGTTTATGACTATGA+AGG | + | chr5.1:7704641-7704660 | MS.gene21439:CDS | 30.0% |
| AAATTTCTCTCTCTTTCTCC+AGG | + | chr5.1:7703218-7703237 | MS.gene21439:intron | 35.0% | |
| AGAGAGAAAAAGGAAGAGAT+AGG | - | chr5.1:7703014-7703033 | None:intergenic | 35.0% | |
| AGATGATGAACCTTTATGCA+TGG | - | chr5.1:7702805-7702824 | None:intergenic | 35.0% | |
| ATATGAGTTCAGCTCCTTAT+TGG | + | chr5.1:7704255-7704274 | MS.gene21439:CDS | 35.0% | |
| ATTGCTCTACCTCAAAAGAT+AGG | + | chr5.1:7703483-7703502 | MS.gene21439:intron | 35.0% | |
| ATTGGAAATGCCAGTGTAAT+AGG | - | chr5.1:7703136-7703155 | None:intergenic | 35.0% | |
| CAAAAGATAGGTATGCTACA+TGG | + | chr5.1:7703495-7703514 | MS.gene21439:intron | 35.0% | |
| CAGCCATCACATATATTTCA+AGG | + | chr5.1:7704449-7704468 | MS.gene21439:CDS | 35.0% | |
| CTTGAAATATATGTGATGGC+TGG | - | chr5.1:7704451-7704470 | None:intergenic | 35.0% | |
| CTTGTTTCATGTTGCTAACT+CGG | - | chr5.1:7704181-7704200 | None:intergenic | 35.0% | |
| GAATCTATTGACATGAGCAA+TGG | + | chr5.1:7704563-7704582 | MS.gene21439:CDS | 35.0% | |
| GACAAAGCCAATGTCAAAAA+AGG | + | chr5.1:7703390-7703409 | MS.gene21439:intron | 35.0% | |
| GGAATGTTCATTATGCTTGT+TGG | - | chr5.1:7704377-7704396 | None:intergenic | 35.0% | |
| TAAAGAACTACTGGAACACT+AGG | + | chr5.1:7704096-7704115 | MS.gene21439:CDS | 35.0% | |
| TCAAAAGCAATAGCATCTTG+TGG | - | chr5.1:7704689-7704708 | None:intergenic | 35.0% | |
| TTTAACCTTCCACTACCATT+TGG | + | chr5.1:7702763-7702782 | MS.gene21439:intron | 35.0% | |
| ! | AAAACATTGGCCTATTACAC+TGG | + | chr5.1:7703123-7703142 | MS.gene21439:intron | 35.0% |
| ! | ATAGAACAAAATGGTACTGG+TGG | + | chr5.1:7703453-7703472 | MS.gene21439:intron | 35.0% |
| ! | GATGAATTTGAAACTGGCAT+AGG | - | chr5.1:7704302-7704321 | None:intergenic | 35.0% |
| ! | TGTAGCATACCTATCTTTTG+AGG | - | chr5.1:7703495-7703514 | None:intergenic | 35.0% |
| ! | TTGAGTTTTGCATCTTCTTC+AGG | - | chr5.1:7703426-7703445 | None:intergenic | 35.0% |
| ! | TTTGAGGAGTCTAGGTATTT+TGG | + | chr5.1:7704704-7704723 | MS.gene21439:CDS | 35.0% |
| !! | AAAATGGTACTGGTGGAAAT+TGG | + | chr5.1:7703460-7703479 | MS.gene21439:intron | 35.0% |
| !! | AAATCAGAATTTGATGGTGG+CGG | + | chr5.1:7704217-7704236 | MS.gene21439:CDS | 35.0% |
| !! | ACAAGATGCTATTGCTTTTG+AGG | + | chr5.1:7704688-7704707 | MS.gene21439:CDS | 35.0% |
| !! | TTCAACAGAAAGCACTAGTT+GGG | + | chr5.1:7704607-7704626 | MS.gene21439:CDS | 35.0% |
| ACAAGCTCACTTAAATCCCT+TGG | - | chr5.1:7704488-7704507 | None:intergenic | 40.0% | |
| ACTACCTTCACCATGCATAA+AGG | + | chr5.1:7702792-7702811 | MS.gene21439:intron | 40.0% | |
| ATATAAAGAAGAGTGGGAGG+AGG | - | chr5.1:7703259-7703278 | None:intergenic | 40.0% | |
| ATATCATTATCCGTTCGTCC+TGG | - | chr5.1:7704077-7704096 | None:intergenic | 40.0% | |
| ATCATAGCAGCACAATTACC+AGG | + | chr5.1:7704056-7704075 | MS.gene21439:CDS | 40.0% | |
| ATCCAGGACTTAAGAGATGT+GGG | + | chr5.1:7703680-7703699 | MS.gene21439:intron | 40.0% | |
| CCAATGTCAAAAAAGGTCCA+TGG | + | chr5.1:7703397-7703416 | MS.gene21439:intron | 40.0% | |
| CTTGTGGAATTGATCCTTGT+TGG | - | chr5.1:7704673-7704692 | None:intergenic | 40.0% | |
| CTTTCCATGGAAAAAGGGTT+TGG | - | chr5.1:7704398-7704417 | None:intergenic | 40.0% | |
| TATAAAGAAGAGTGGGAGGA+GGG | - | chr5.1:7703258-7703277 | None:intergenic | 40.0% | |
| TATGAAGGTTGTTGCCAACA+AGG | + | chr5.1:7704656-7704675 | MS.gene21439:CDS | 40.0% | |
| TCTATTGACATGAGCAATGG+TGG | + | chr5.1:7704566-7704585 | MS.gene21439:CDS | 40.0% | |
| TGAACCTTTATGCATGGTGA+AGG | - | chr5.1:7702799-7702818 | None:intergenic | 40.0% | |
| TTATTGTTGTGGATGGGGAA+TGG | - | chr5.1:7702828-7702847 | None:intergenic | 40.0% | |
| TTGGGGAGATATGAACTCTT+TGG | + | chr5.1:7704625-7704644 | MS.gene21439:CDS | 40.0% | |
| ! | CATTCCAAACCCTTTTTCCA+TGG | + | chr5.1:7704391-7704410 | MS.gene21439:CDS | 40.0% |
| !! | CTATTGCTTTTGAGGAGTCT+AGG | + | chr5.1:7704696-7704715 | MS.gene21439:CDS | 40.0% |
| !! | CTTCAACAGAAAGCACTAGT+TGG | + | chr5.1:7704606-7704625 | MS.gene21439:CDS | 40.0% |
| !! | TCAACAGAAAGCACTAGTTG+GGG | + | chr5.1:7704608-7704627 | MS.gene21439:CDS | 40.0% |
| !!! | CCATGGACCTTTTTTGACAT+TGG | - | chr5.1:7703400-7703419 | None:intergenic | 40.0% |
| AGAAGCTCCTTGGGAAACAA+AGG | + | chr5.1:7704126-7704145 | MS.gene21439:CDS | 45.0% | |
| AGCACAATTACCAGGACGAA+CGG | + | chr5.1:7704064-7704083 | MS.gene21439:CDS | 45.0% | |
| AGGTTGAAGAAGAAGCTCCT+TGG | + | chr5.1:7704116-7704135 | MS.gene21439:CDS | 45.0% | |
| ATAAAGAAGAGTGGGAGGAG+GGG | - | chr5.1:7703257-7703276 | None:intergenic | 45.0% | |
| ATGCATGGTGAAGGTAGTGT+GGG | - | chr5.1:7702790-7702809 | None:intergenic | 45.0% | |
| GAATACTCTGCAGGCCAATA+AGG | - | chr5.1:7704272-7704291 | None:intergenic | 45.0% | |
| GATCCAGGACTTAAGAGATG+TGG | + | chr5.1:7703679-7703698 | MS.gene21439:intron | 45.0% | |
| GGAAAAGCTGTCGTCTTAGA+TGG | + | chr5.1:7703701-7703720 | MS.gene21439:intron | 45.0% | |
| GGATGAACAGAATACTCTGC+AGG | - | chr5.1:7704281-7704300 | None:intergenic | 45.0% | |
| GGTTGAAGAAGAAGCTCCTT+GGG | + | chr5.1:7704117-7704136 | MS.gene21439:CDS | 45.0% | |
| TACCAACCGAGCTATCTACT+TGG | + | chr5.1:7703939-7703958 | MS.gene21439:intron | 45.0% | |
| TATGCATGGTGAAGGTAGTG+TGG | - | chr5.1:7702791-7702810 | None:intergenic | 45.0% | |
| TGCAGCCTCTATGTTAGCAT+CGG | + | chr5.1:7703787-7703806 | MS.gene21439:intron | 45.0% | |
| TGCTTCCGATGCTAACATAG+AGG | - | chr5.1:7703795-7703814 | None:intergenic | 45.0% | |
| TGGATGAAGCAAGCTTGTGA+AGG | - | chr5.1:7704357-7704376 | None:intergenic | 45.0% | |
| TTCCAAGTAGATAGCTCGGT+TGG | - | chr5.1:7703944-7703963 | None:intergenic | 45.0% | |
| TTCCCACATCTCTTAAGTCC+TGG | - | chr5.1:7703685-7703704 | None:intergenic | 45.0% | |
| ! | TCTATGTTAGCATCGGAAGC+AGG | + | chr5.1:7703794-7703813 | MS.gene21439:intron | 45.0% |
| !! | ACATTGGCTTTGTCACAGCA+AGG | - | chr5.1:7703384-7703403 | None:intergenic | 45.0% |
| !!! | TAATTAATTAATAAGTTTTA+GGG | - | chr5.1:7703889-7703908 | None:intergenic | 5.0% |
| AGGGGCAGAGAGAAATAACC+TGG | - | chr5.1:7703239-7703258 | None:intergenic | 50.0% | |
| AGTGTGGGACCAAATGGTAG+TGG | - | chr5.1:7702775-7702794 | None:intergenic | 50.0% | |
| GAAGGTAGTGTGGGACCAAA+TGG | - | chr5.1:7702781-7702800 | None:intergenic | 50.0% | |
| GCATCTTCTTCAGGTGACCA+TGG | - | chr5.1:7703417-7703436 | None:intergenic | 50.0% | |
| GCTCCTTGGGAAACAAAGGA+AGG | + | chr5.1:7704130-7704149 | MS.gene21439:CDS | 50.0% | |
| GGAGCTCTTCCCATGTTTGT+TGG | - | chr5.1:7703363-7703382 | None:intergenic | 50.0% | |
| TCTGTGGATGTGTGTGATCC+AGG | + | chr5.1:7703664-7703683 | MS.gene21439:intron | 50.0% | |
| ! | GCTCCTTCCTTTGTTTCCCA+AGG | - | chr5.1:7704136-7704155 | None:intergenic | 50.0% |
| !! | AATTTGATGGTGGCGGCTTC+GGG | + | chr5.1:7704224-7704243 | MS.gene21439:CDS | 50.0% |
| !! | GAATTTGATGGTGGCGGCTT+CGG | + | chr5.1:7704223-7704242 | MS.gene21439:CDS | 50.0% |
| !! | TGGGACCAAATGGTAGTGGA+AGG | - | chr5.1:7702771-7702790 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 7702748 | 7704742 | 7702748 | ID=MS.gene21439 |
| chr5.1 | mRNA | 7702748 | 7704742 | 7702748 | ID=MS.gene21439.t1;Parent=MS.gene21439 |
| chr5.1 | exon | 7702748 | 7702752 | 7702748 | ID=MS.gene21439.t1.exon1;Parent=MS.gene21439.t1 |
| chr5.1 | CDS | 7702748 | 7702752 | 7702748 | ID=cds.MS.gene21439.t1;Parent=MS.gene21439.t1 |
| chr5.1 | exon | 7704049 | 7704742 | 7704049 | ID=MS.gene21439.t1.exon2;Parent=MS.gene21439.t1 |
| chr5.1 | CDS | 7704049 | 7704742 | 7704049 | ID=cds.MS.gene21439.t1;Parent=MS.gene21439.t1 |
| Gene Sequence |
| Protein sequence |
