Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21460.t1 | XP_003611493.1 | 87.5 | 335 | 34 | 3 | 1 | 329 | 1 | 333 | 6.60E-147 | 530.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21460.t1 | Q9T072 | 37.4 | 329 | 182 | 10 | 12 | 324 | 5 | 325 | 3.1e-36 | 154.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21460.t1 | G7K125 | 87.5 | 335 | 34 | 3 | 1 | 329 | 1 | 333 | 4.8e-147 | 530.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21460.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053811 | MS.gene21460 | 0.840011 | 1.12E-57 | -1.69E-46 |
MS.gene059664 | MS.gene21460 | 0.963645 | 2.43E-122 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21460.t1 | MTR_5g014520 | 90.746 | 335 | 23 | 3 | 1 | 329 | 1 | 333 | 0.0 | 514 |
MS.gene21460.t1 | MTR_5g014560 | 70.303 | 330 | 74 | 6 | 1 | 329 | 1 | 307 | 2.75e-144 | 411 |
MS.gene21460.t1 | MTR_6g047570 | 44.167 | 360 | 134 | 16 | 1 | 323 | 1 | 330 | 3.61e-68 | 218 |
MS.gene21460.t1 | MTR_4g066460 | 46.203 | 316 | 126 | 11 | 32 | 320 | 22 | 320 | 6.36e-66 | 212 |
MS.gene21460.t1 | MTR_0246s0020 | 40.967 | 393 | 142 | 14 | 1 | 323 | 1 | 373 | 3.00e-65 | 212 |
MS.gene21460.t1 | MTR_4g067010 | 45.161 | 310 | 130 | 10 | 32 | 320 | 22 | 312 | 3.72e-64 | 207 |
MS.gene21460.t1 | MTR_4g066380 | 44.611 | 334 | 154 | 12 | 1 | 320 | 1 | 317 | 6.63e-64 | 207 |
MS.gene21460.t1 | MTR_0246s0050 | 43.450 | 313 | 125 | 9 | 43 | 323 | 23 | 315 | 1.72e-63 | 205 |
MS.gene21460.t1 | MTR_4g098035 | 43.770 | 313 | 124 | 9 | 43 | 323 | 44 | 336 | 2.33e-63 | 206 |
MS.gene21460.t1 | MTR_0011s0260 | 41.711 | 374 | 147 | 13 | 1 | 323 | 1 | 354 | 8.31e-62 | 202 |
MS.gene21460.t1 | MTR_0011s0210 | 41.444 | 374 | 148 | 13 | 1 | 323 | 1 | 354 | 1.48e-60 | 199 |
MS.gene21460.t1 | MTR_0250s0040 | 53.052 | 213 | 84 | 7 | 112 | 320 | 56 | 256 | 1.65e-60 | 196 |
MS.gene21460.t1 | MTR_0246s0020 | 39.840 | 374 | 135 | 13 | 1 | 304 | 1 | 354 | 2.15e-58 | 194 |
MS.gene21460.t1 | MTR_2g010450 | 49.010 | 202 | 96 | 2 | 131 | 332 | 159 | 353 | 6.41e-57 | 189 |
MS.gene21460.t1 | MTR_4g092700 | 51.309 | 191 | 88 | 2 | 134 | 322 | 141 | 328 | 3.61e-56 | 187 |
MS.gene21460.t1 | MTR_5g014600 | 40.395 | 354 | 151 | 13 | 6 | 322 | 2 | 332 | 4.44e-55 | 184 |
MS.gene21460.t1 | MTR_2g104550 | 44.726 | 237 | 112 | 6 | 96 | 322 | 82 | 309 | 1.79e-52 | 177 |
MS.gene21460.t1 | MTR_4g009540 | 48.969 | 194 | 90 | 3 | 137 | 322 | 136 | 328 | 4.31e-52 | 176 |
MS.gene21460.t1 | MTR_5g014550 | 69.919 | 123 | 36 | 1 | 181 | 303 | 54 | 175 | 1.29e-50 | 168 |
MS.gene21460.t1 | MTR_2g104490 | 40.594 | 303 | 145 | 11 | 42 | 331 | 33 | 313 | 2.86e-50 | 171 |
MS.gene21460.t1 | MTR_4g097950 | 47.347 | 245 | 112 | 8 | 88 | 320 | 6 | 245 | 9.70e-50 | 167 |
MS.gene21460.t1 | MTR_4g097940 | 40.357 | 280 | 152 | 7 | 51 | 322 | 51 | 323 | 6.22e-49 | 168 |
MS.gene21460.t1 | MTR_4g009110 | 43.426 | 251 | 121 | 6 | 85 | 322 | 105 | 347 | 2.70e-48 | 167 |
MS.gene21460.t1 | MTR_8g009020 | 41.631 | 233 | 125 | 3 | 96 | 320 | 89 | 318 | 3.90e-48 | 166 |
MS.gene21460.t1 | MTR_5g014640 | 36.918 | 279 | 144 | 6 | 69 | 320 | 46 | 319 | 1.21e-45 | 159 |
MS.gene21460.t1 | MTR_4g097920 | 38.214 | 280 | 158 | 7 | 51 | 322 | 36 | 308 | 1.87e-45 | 158 |
MS.gene21460.t1 | MTR_4g097920 | 38.214 | 280 | 158 | 7 | 51 | 322 | 51 | 323 | 1.95e-45 | 159 |
MS.gene21460.t1 | MTR_4g009540 | 47.159 | 176 | 84 | 3 | 137 | 304 | 136 | 310 | 3.05e-43 | 152 |
MS.gene21460.t1 | MTR_2g104490 | 39.130 | 276 | 134 | 10 | 42 | 304 | 33 | 287 | 3.98e-42 | 149 |
MS.gene21460.t1 | MTR_2g104560 | 44.199 | 181 | 90 | 4 | 144 | 320 | 47 | 220 | 8.83e-42 | 146 |
MS.gene21460.t1 | MTR_7g080780 | 44.324 | 185 | 93 | 1 | 136 | 320 | 137 | 311 | 6.73e-41 | 146 |
MS.gene21460.t1 | MTR_7g080780 | 44.324 | 185 | 93 | 1 | 136 | 320 | 150 | 324 | 9.27e-41 | 146 |
MS.gene21460.t1 | MTR_2g104650 | 42.347 | 196 | 108 | 4 | 134 | 325 | 75 | 269 | 1.74e-40 | 144 |
MS.gene21460.t1 | MTR_8g009010 | 39.091 | 220 | 85 | 5 | 144 | 360 | 127 | 300 | 8.15e-38 | 138 |
MS.gene21460.t1 | MTR_7g451650 | 48.980 | 147 | 64 | 1 | 174 | 320 | 57 | 192 | 2.69e-37 | 133 |
MS.gene21460.t1 | MTR_8g069740 | 43.860 | 171 | 91 | 4 | 137 | 303 | 96 | 265 | 4.34e-37 | 135 |
MS.gene21460.t1 | MTR_2g104590 | 42.487 | 193 | 74 | 5 | 144 | 327 | 62 | 226 | 1.16e-36 | 133 |
MS.gene21460.t1 | MTR_4g009510 | 45.349 | 172 | 81 | 4 | 154 | 324 | 45 | 204 | 2.10e-36 | 131 |
MS.gene21460.t1 | MTR_2g104500 | 40.323 | 186 | 104 | 3 | 135 | 320 | 89 | 267 | 1.88e-35 | 131 |
MS.gene21460.t1 | MTR_4g009420 | 49.660 | 147 | 55 | 2 | 174 | 320 | 65 | 192 | 1.38e-34 | 126 |
MS.gene21460.t1 | MTR_7g050350 | 48.227 | 141 | 62 | 1 | 180 | 320 | 1 | 130 | 1.65e-34 | 124 |
MS.gene21460.t1 | MTR_7g451650 | 48.227 | 141 | 62 | 1 | 180 | 320 | 1 | 130 | 1.65e-34 | 124 |
MS.gene21460.t1 | MTR_2g104530 | 41.624 | 197 | 94 | 5 | 135 | 320 | 83 | 269 | 7.28e-34 | 127 |
MS.gene21460.t1 | MTR_7g451650 | 47.407 | 135 | 60 | 1 | 174 | 308 | 57 | 180 | 5.14e-31 | 117 |
MS.gene21460.t1 | MTR_6g047550 | 38.824 | 255 | 105 | 11 | 1 | 219 | 1 | 240 | 1.90e-29 | 115 |
MS.gene21460.t1 | MTR_4g009420 | 48.148 | 135 | 51 | 2 | 174 | 308 | 65 | 180 | 4.89e-28 | 109 |
MS.gene21460.t1 | MTR_1g072320 | 29.121 | 182 | 121 | 2 | 111 | 285 | 431 | 611 | 9.64e-20 | 91.3 |
MS.gene21460.t1 | MTR_7g117670 | 29.940 | 167 | 105 | 3 | 151 | 316 | 402 | 557 | 6.39e-16 | 79.3 |
MS.gene21460.t1 | MTR_8g067280 | 35.570 | 149 | 84 | 4 | 151 | 288 | 462 | 609 | 2.61e-15 | 77.8 |
MS.gene21460.t1 | MTR_8g027495 | 28.313 | 166 | 109 | 3 | 151 | 316 | 458 | 613 | 3.06e-15 | 77.4 |
MS.gene21460.t1 | MTR_5g030430 | 30.337 | 178 | 93 | 5 | 151 | 308 | 493 | 659 | 1.35e-14 | 75.5 |
MS.gene21460.t1 | MTR_1g112680 | 31.925 | 213 | 123 | 10 | 38 | 231 | 191 | 400 | 3.97e-14 | 73.9 |
MS.gene21460.t1 | MTR_3g030700 | 30.168 | 179 | 113 | 4 | 133 | 303 | 178 | 352 | 9.94e-14 | 72.0 |
MS.gene21460.t1 | MTR_8g064700 | 27.368 | 190 | 110 | 5 | 124 | 301 | 225 | 398 | 1.13e-13 | 72.4 |
MS.gene21460.t1 | MTR_8g024770 | 26.061 | 165 | 113 | 3 | 101 | 260 | 231 | 391 | 7.96e-13 | 69.7 |
MS.gene21460.t1 | MTR_5g064950 | 27.374 | 179 | 113 | 5 | 152 | 314 | 102 | 279 | 1.57e-12 | 67.8 |
MS.gene21460.t1 | MTR_5g064950 | 27.950 | 161 | 100 | 4 | 152 | 296 | 102 | 262 | 3.21e-12 | 67.0 |
MS.gene21460.t1 | MTR_8g024790 | 26.857 | 175 | 119 | 4 | 151 | 319 | 291 | 462 | 3.84e-12 | 67.8 |
MS.gene21460.t1 | MTR_7g096350 | 46.269 | 67 | 35 | 1 | 151 | 216 | 355 | 421 | 7.74e-12 | 67.0 |
MS.gene21460.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 140 | 324 | 390 | 599 | 1.29e-11 | 66.2 |
MS.gene21460.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 140 | 324 | 297 | 506 | 1.98e-11 | 65.5 |
MS.gene21460.t1 | MTR_0194s0050 | 26.347 | 167 | 101 | 4 | 152 | 296 | 186 | 352 | 2.11e-11 | 65.1 |
MS.gene21460.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 140 | 324 | 233 | 442 | 2.39e-11 | 65.1 |
MS.gene21460.t1 | MTR_3g498695 | 27.419 | 186 | 124 | 4 | 134 | 310 | 283 | 466 | 3.68e-11 | 64.7 |
MS.gene21460.t1 | MTR_7g083900 | 29.240 | 171 | 108 | 5 | 152 | 310 | 287 | 456 | 5.71e-11 | 63.9 |
MS.gene21460.t1 | MTR_2g084280 | 33.094 | 139 | 85 | 4 | 153 | 289 | 135 | 267 | 6.20e-11 | 63.2 |
MS.gene21460.t1 | MTR_3g104100 | 28.488 | 172 | 106 | 4 | 153 | 311 | 197 | 364 | 6.90e-11 | 63.5 |
MS.gene21460.t1 | MTR_3g498695 | 28.161 | 174 | 114 | 4 | 134 | 298 | 283 | 454 | 7.07e-11 | 63.9 |
MS.gene21460.t1 | MTR_7g110810 | 44.156 | 77 | 42 | 1 | 128 | 203 | 188 | 264 | 8.17e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21460.t1 | AT4G37850 | 44.106 | 263 | 112 | 9 | 84 | 324 | 76 | 325 | 9.95e-53 | 178 |
MS.gene21460.t1 | AT4G37850 | 44.106 | 263 | 112 | 9 | 84 | 324 | 76 | 325 | 9.95e-53 | 178 |
MS.gene21460.t1 | AT2G22760 | 44.221 | 199 | 88 | 5 | 139 | 320 | 99 | 291 | 2.24e-44 | 155 |
MS.gene21460.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 89 | 319 | 90 | 325 | 8.70e-44 | 154 |
MS.gene21460.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 89 | 319 | 62 | 297 | 1.04e-43 | 154 |
MS.gene21460.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 89 | 319 | 86 | 321 | 1.08e-43 | 154 |
MS.gene21460.t1 | AT2G22750 | 44.033 | 243 | 116 | 8 | 89 | 319 | 62 | 296 | 2.61e-42 | 150 |
MS.gene21460.t1 | AT2G22750 | 44.033 | 243 | 116 | 8 | 89 | 319 | 90 | 324 | 2.69e-42 | 150 |
MS.gene21460.t1 | AT2G22760 | 45.055 | 182 | 78 | 4 | 139 | 304 | 99 | 274 | 3.02e-41 | 146 |
MS.gene21460.t1 | AT2G22770 | 35.647 | 317 | 158 | 9 | 39 | 320 | 10 | 315 | 4.48e-40 | 144 |
MS.gene21460.t1 | AT4G09820 | 32.812 | 128 | 65 | 1 | 152 | 279 | 364 | 470 | 7.21e-16 | 79.3 |
MS.gene21460.t1 | AT4G17880 | 31.250 | 160 | 104 | 3 | 151 | 308 | 416 | 571 | 1.32e-15 | 78.6 |
MS.gene21460.t1 | AT2G46510 | 32.331 | 133 | 69 | 3 | 130 | 260 | 372 | 485 | 2.61e-15 | 77.8 |
MS.gene21460.t1 | AT1G32640 | 30.968 | 155 | 106 | 1 | 151 | 305 | 452 | 605 | 4.94e-15 | 77.0 |
MS.gene21460.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 9.33e-15 | 74.3 |
MS.gene21460.t1 | AT5G46760 | 30.769 | 169 | 97 | 4 | 151 | 308 | 415 | 574 | 1.02e-14 | 75.9 |
MS.gene21460.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 1.34e-14 | 74.7 |
MS.gene21460.t1 | AT2G16910 | 32.258 | 155 | 84 | 4 | 152 | 285 | 315 | 469 | 2.15e-14 | 75.1 |
MS.gene21460.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 151 | 285 | 128 | 263 | 2.37e-14 | 73.6 |
MS.gene21460.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 151 | 285 | 179 | 314 | 2.48e-14 | 73.9 |
MS.gene21460.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 3.40e-14 | 74.3 |
MS.gene21460.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 3.40e-14 | 74.3 |
MS.gene21460.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 136 | 301 | 418 | 560 | 3.40e-14 | 74.3 |
MS.gene21460.t1 | AT4G30980 | 28.729 | 181 | 110 | 3 | 100 | 270 | 82 | 253 | 9.67e-13 | 68.6 |
MS.gene21460.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 1.08e-12 | 69.7 |
MS.gene21460.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 1.08e-12 | 69.7 |
MS.gene21460.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 151 | 300 | 405 | 570 | 1.08e-12 | 69.7 |
MS.gene21460.t1 | AT2G28160 | 28.144 | 167 | 99 | 3 | 134 | 289 | 114 | 270 | 1.13e-12 | 68.6 |
MS.gene21460.t1 | AT2G28160 | 28.144 | 167 | 99 | 3 | 134 | 289 | 114 | 270 | 1.41e-12 | 68.2 |
MS.gene21460.t1 | AT4G30980 | 28.729 | 181 | 110 | 3 | 100 | 270 | 130 | 301 | 2.01e-12 | 68.2 |
MS.gene21460.t1 | AT4G16430 | 50.000 | 58 | 29 | 0 | 151 | 208 | 320 | 377 | 4.27e-12 | 67.8 |
MS.gene21460.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 151 | 300 | 441 | 611 | 5.39e-12 | 67.8 |
MS.gene21460.t1 | AT1G12860 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 5.50e-12 | 67.0 |
MS.gene21460.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 151 | 300 | 449 | 619 | 5.73e-12 | 67.4 |
MS.gene21460.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 151 | 300 | 446 | 616 | 6.08e-12 | 67.4 |
MS.gene21460.t1 | AT1G12860 | 31.818 | 154 | 96 | 4 | 152 | 298 | 268 | 419 | 8.10e-12 | 66.6 |
MS.gene21460.t1 | AT2G46810 | 26.203 | 187 | 118 | 3 | 152 | 328 | 123 | 299 | 3.98e-11 | 63.9 |
MS.gene21460.t1 | AT1G72210 | 28.713 | 202 | 112 | 8 | 152 | 329 | 127 | 320 | 4.18e-11 | 63.9 |
MS.gene21460.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 4.32e-11 | 62.8 |
MS.gene21460.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 5.09e-11 | 62.4 |
MS.gene21460.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 5.79e-11 | 62.0 |
MS.gene21460.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 152 | 301 | 56 | 213 | 7.17e-11 | 62.8 |
MS.gene21460.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 152 | 301 | 55 | 212 | 7.50e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5.3:+7649590 | MS.gene21460:CDS |
CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5.3:-7652183 | None:intergenic |
AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5.3:+7652448 | MS.gene21460:CDS |
GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5.3:+7649873 | MS.gene21460:CDS |
TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5.3:-7649821 | None:intergenic |
GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5.3:+7649419 | MS.gene21460:intron |
CAACGTGAACAAAACTTGTT+TGG | 0.357562 | 5.3:+7649468 | MS.gene21460:CDS |
CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5.3:-7652341 | None:intergenic |
GGACGTGGTGGGTTGTGTTT+CGG | 0.364752 | 5.3:+7656407 | MS.gene21460:CDS |
GGTAATTGTGTTTGTGAGAA+TGG | 0.369721 | 5.3:-7649702 | None:intergenic |
TTCTCGCCGGCGACTTTACA+TGG | 0.370147 | 5.3:+7656385 | MS.gene21460:CDS |
TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5.3:+7652222 | MS.gene21460:CDS |
AACTAGCTGGTTATTTGATC+TGG | 0.377318 | 5.3:+7649278 | MS.gene21460:CDS |
ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5.3:+7652330 | MS.gene21460:CDS |
GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5.3:+7649797 | MS.gene21460:CDS |
GAGAACGTCGGAGGAGGGTT+AGG | 0.416223 | 5.3:-7656367 | None:intergenic |
TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5.3:+7652350 | MS.gene21460:CDS |
ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5.3:+7652133 | MS.gene21460:CDS |
TTGGAAGAAATGGAAATAGA+TGG | 0.445551 | 5.3:+7649429 | MS.gene21460:CDS |
GTTGTGTTTCGGTTTCTTGA+CGG | 0.451196 | 5.3:+7656418 | MS.gene21460:CDS |
AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5.3:-7649548 | None:intergenic |
CAATTACCTCAAAATAGAAA+AGG | 0.462121 | 5.3:+7649717 | MS.gene21460:CDS |
TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5.3:+7652483 | MS.gene21460:CDS |
GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5.3:+7652372 | MS.gene21460:CDS |
GCCGGCGAGAACGTCGGAGG+AGG | 0.486200 | 5.3:-7656373 | None:intergenic |
GTCGGAGGAGGGTTAGGAAA+TGG | 0.492692 | 5.3:-7656361 | None:intergenic |
TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5.3:+7649884 | MS.gene21460:CDS |
ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5.3:-7649793 | None:intergenic |
CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5.3:-7649891 | None:intergenic |
CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5.3:-7652150 | None:intergenic |
AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5.3:+7652176 | MS.gene21460:CDS |
CAAACTCATCATCAACTAGC+TGG | 0.535900 | 5.3:+7649265 | MS.gene21460:CDS |
AATTACCTCAAAATAGAAAA+GGG | 0.536192 | 5.3:+7649718 | MS.gene21460:CDS |
GACTTTACATGGGACGTGGT+GGG | 0.547942 | 5.3:+7656396 | MS.gene21460:CDS |
AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5.3:-7652328 | None:intergenic |
GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5.3:-7652480 | None:intergenic |
CGACTTTACATGGGACGTGG+TGG | 0.562110 | 5.3:+7656395 | MS.gene21460:CDS |
CCCTCCTCCGACGTTCTCGC+CGG | 0.563566 | 5.3:+7656372 | MS.gene21460:CDS |
AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5.3:+7652177 | MS.gene21460:CDS |
CCGGCGAGAACGTCGGAGGA+GGG | 0.574137 | 5.3:-7656372 | None:intergenic |
CGGCGACTTTACATGGGACG+TGG | 0.574768 | 5.3:+7656392 | MS.gene21460:CDS |
TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5.3:-7652463 | None:intergenic |
ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5.3:+7652373 | MS.gene21460:CDS |
ACAACATTGTACGAGAAGAA+AGG | 0.579497 | 5.3:-7656328 | None:intergenic |
GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5.3:-7652259 | None:intergenic |
CACGTCCCATGTAAAGTCGC+CGG | 0.582380 | 5.3:-7656391 | None:intergenic |
TTTCTTTACCTGAGCAACGA+TGG | 0.599102 | 5.3:-7652491 | None:intergenic |
ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5.3:+7649768 | MS.gene21460:CDS |
GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5.3:-7652459 | None:intergenic |
TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5.3:+7652228 | MS.gene21460:CDS |
TCTCGCCGGCGACTTTACAT+GGG | 0.621088 | 5.3:+7656386 | MS.gene21460:CDS |
GGAGGGTTAGGAAATGGTCT+CGG | 0.626341 | 5.3:-7656355 | None:intergenic |
AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5.3:-7652327 | None:intergenic |
TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5.3:-7649558 | None:intergenic |
GTCGCCGGCGAGAACGTCGG+AGG | 0.640985 | 5.3:-7656376 | None:intergenic |
CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5.3:+7649778 | MS.gene21460:CDS |
ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5.3:+7649785 | MS.gene21460:CDS |
GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5.3:+7652289 | MS.gene21460:CDS |
AAAGTCGCCGGCGAGAACGT+CGG | 0.674579 | 5.3:-7656379 | None:intergenic |
CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5.3:+7649769 | MS.gene21460:CDS |
GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5.3:+7649762 | MS.gene21460:CDS |
GGGTTAGGAAATGGTCTCGG+CGG | 0.724025 | 5.3:-7656352 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 7649243 | 7656450 | 7649243 | ID=MS.gene21460 |
chr5.3 | mRNA | 7649243 | 7656450 | 7649243 | ID=MS.gene21460.t1;Parent=MS.gene21460 |
chr5.3 | exon | 7649243 | 7649299 | 7649243 | ID=MS.gene21460.t1.exon1;Parent=MS.gene21460.t1 |
chr5.3 | CDS | 7649243 | 7649299 | 7649243 | ID=cds.MS.gene21460.t1;Parent=MS.gene21460.t1 |
chr5.3 | exon | 7649426 | 7649905 | 7649426 | ID=MS.gene21460.t1.exon2;Parent=MS.gene21460.t1 |
chr5.3 | CDS | 7649426 | 7649905 | 7649426 | ID=cds.MS.gene21460.t1;Parent=MS.gene21460.t1 |
chr5.3 | exon | 7652133 | 7652504 | 7652133 | ID=MS.gene21460.t1.exon3;Parent=MS.gene21460.t1 |
chr5.3 | CDS | 7652133 | 7652504 | 7652133 | ID=cds.MS.gene21460.t1;Parent=MS.gene21460.t1 |
chr5.3 | exon | 7654233 | 7654281 | 7654233 | ID=MS.gene21460.t1.exon4;Parent=MS.gene21460.t1 |
chr5.3 | CDS | 7654233 | 7654281 | 7654233 | ID=cds.MS.gene21460.t1;Parent=MS.gene21460.t1 |
chr5.3 | exon | 7656299 | 7656450 | 7656299 | ID=MS.gene21460.t1.exon5;Parent=MS.gene21460.t1 |
chr5.3 | CDS | 7656299 | 7656450 | 7656299 | ID=cds.MS.gene21460.t1;Parent=MS.gene21460.t1 |
Gene Sequence |
Protein sequence |