AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21599

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21599.t1 MTR_1g090370 92.609 230 15 2 1 230 1 228 1.72e-155 430
MS.gene21599.t1 MTR_3g087940 40.777 206 98 5 43 230 155 354 1.97e-39 139
MS.gene21599.t1 MTR_8g091650 35.088 228 122 7 22 230 56 276 7.13e-33 120
MS.gene21599.t1 MTR_8g091650 35.088 228 122 7 22 230 129 349 4.39e-32 120
MS.gene21599.t1 MTR_8g091650 35.088 228 122 7 22 230 165 385 8.06e-32 120
MS.gene21599.t1 MTR_8g040120 33.058 242 133 5 13 230 223 459 2.51e-26 105
MS.gene21599.t1 MTR_7g089800 34.234 222 115 6 34 230 201 416 1.36e-24 100
MS.gene21599.t1 MTR_7g089800 34.234 222 115 6 34 230 230 445 1.72e-24 100
MS.gene21599.t1 MTR_2g086420 32.710 214 120 7 34 230 256 462 1.74e-24 101
MS.gene21599.t1 MTR_2g086420 32.710 214 120 7 34 230 255 461 1.95e-24 100
MS.gene21599.t1 MTR_7g092750 30.622 209 119 5 43 230 152 355 4.72e-24 98.6
MS.gene21599.t1 MTR_7g092750 30.622 209 119 5 43 230 253 456 1.40e-23 98.2
MS.gene21599.t1 MTR_1g111310 31.651 218 123 5 34 230 488 700 2.18e-22 95.5
MS.gene21599.t1 MTR_1g111310 32.536 209 116 4 42 230 122 325 2.33e-22 95.5
MS.gene21599.t1 MTR_4g053250 31.429 245 138 8 10 230 216 454 1.12e-20 90.1
MS.gene21599.t1 MTR_3g073560 30.734 218 118 6 28 222 125 332 1.25e-19 87.4
MS.gene21599.t1 MTR_5g060950 32.195 205 117 5 43 230 143 342 4.17e-18 82.0
MS.gene21599.t1 MTR_0126s0080 35.338 133 72 4 48 172 301 427 6.69e-16 76.3
MS.gene21599.t1 MTR_5g054900 27.193 228 137 4 27 230 120 342 6.16e-15 73.2
MS.gene21599.t1 MTR_5g054900 27.193 228 137 4 27 230 124 346 6.49e-15 73.2
MS.gene21599.t1 MTR_5g054900 28.502 207 119 6 48 230 226 427 7.09e-15 73.2
MS.gene21599.t1 MTR_5g054900 28.502 207 119 6 48 230 252 453 7.22e-15 73.6
MS.gene21599.t1 MTR_7g092750 24.402 209 106 5 43 230 253 430 1.51e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21599.t1 AT5G65210 39.512 205 100 6 43 229 90 288 7.39e-34 123
MS.gene21599.t1 AT5G10030 39.512 205 100 6 43 229 156 354 8.26e-34 124
MS.gene21599.t1 AT5G10030 39.512 205 100 6 43 229 156 354 8.26e-34 124
MS.gene21599.t1 AT5G10030 39.512 205 100 6 43 229 156 354 8.26e-34 124
MS.gene21599.t1 AT5G10030 39.512 205 100 6 43 229 156 354 8.26e-34 124
MS.gene21599.t1 AT5G10030 39.512 205 100 6 43 229 156 354 8.26e-34 124
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT5G65210 39.024 205 101 6 43 229 160 358 3.62e-33 123
MS.gene21599.t1 AT1G77920 34.081 223 121 6 28 230 143 359 5.42e-30 114
MS.gene21599.t1 AT1G22070 36.408 206 99 5 48 230 179 375 1.13e-27 108
MS.gene21599.t1 AT1G08320 34.579 214 116 7 34 230 116 322 2.85e-26 104
MS.gene21599.t1 AT1G08320 34.579 214 116 7 34 230 116 322 2.85e-26 104
MS.gene21599.t1 AT5G06950 33.981 206 108 4 48 230 123 323 8.42e-26 102
MS.gene21599.t1 AT5G06950 33.981 206 108 4 48 230 123 323 8.42e-26 102
MS.gene21599.t1 AT5G06950 33.981 206 108 4 48 230 123 323 8.42e-26 102
MS.gene21599.t1 AT5G06950 33.981 206 108 4 48 230 123 323 8.42e-26 102
MS.gene21599.t1 AT5G06950 33.981 206 108 4 48 230 123 323 8.42e-26 102
MS.gene21599.t1 AT1G08320 34.579 214 116 7 34 230 240 446 2.12e-25 103
MS.gene21599.t1 AT1G08320 34.579 214 116 7 34 230 240 446 2.12e-25 103
MS.gene21599.t1 AT1G08320 34.579 214 116 7 34 230 240 446 2.12e-25 103
MS.gene21599.t1 AT5G06839 32.243 214 114 4 43 230 201 409 3.71e-24 99.8
MS.gene21599.t1 AT5G06839 32.243 214 114 4 43 230 200 408 3.90e-24 99.8
MS.gene21599.t1 AT5G06839 32.243 214 114 4 43 230 243 451 6.20e-24 99.4
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 96 296 1.09e-23 96.7
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 117 317 1.90e-23 96.7
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 123 323 1.92e-23 96.7
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 123 323 1.92e-23 96.7
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 123 323 1.92e-23 96.7
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 123 323 1.92e-23 96.7
MS.gene21599.t1 AT5G06960 33.495 206 109 4 48 230 103 303 2.65e-23 95.9
MS.gene21599.t1 AT5G06960 33.495 206 109 4 48 230 123 323 2.89e-23 96.3
MS.gene21599.t1 AT5G06960 33.495 206 109 4 48 230 123 323 2.89e-23 96.3
MS.gene21599.t1 AT3G12250 32.524 206 111 4 48 230 148 348 3.64e-23 96.3
MS.gene21599.t1 AT1G68640 30.332 211 119 5 43 230 240 445 1.31e-16 78.6

Find 29 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATTAGCCTCATTTAT+TGG 0.228715 1.3:-63193877 None:intergenic
CTTTATGATATTTATAATCT+TGG 0.237785 1.3:+63195865 MS.gene21599:CDS
GGAGAAGTCTTGAAGATTAA+TGG 0.283835 1.3:+63193904 MS.gene21599:CDS
TCGTCCTTCTCAACTTCTTC+AGG 0.297180 1.3:+63195592 MS.gene21599:CDS
CAACATGTGAACGCAATCTA+TGG 0.375038 1.3:+63195555 MS.gene21599:CDS
CAGCACGAAGCCTGGTGCTC+TGG 0.399825 1.3:-63193849 None:intergenic
TTGCTTTATCAATGATTTGT+TGG 0.412400 1.3:-63195939 None:intergenic
TTACCTCTTTGAAGAAGCTT+AGG 0.413182 1.3:-63196008 None:intergenic
AAAATTGATGCAAGAATTGC+CGG 0.420339 1.3:-63196157 None:intergenic
AATGAGGCTAATAATATTCA+AGG 0.455722 1.3:+63193883 MS.gene21599:CDS
ATTGATAAAGCAACATTAGC+AGG 0.485264 1.3:+63195949 MS.gene21599:CDS
CAAAGTGAGCTCCGAGGCTG+CGG 0.496681 1.3:-63196245 None:intergenic
TTGAAGAAGCTTAGGTGTTG+AGG 0.516308 1.3:-63196000 None:intergenic
ACAAGTTGAGCCAGAGCACC+AGG 0.519039 1.3:+63193839 MS.gene21599:CDS
ATCTACATAATCCGCAGCCT+CGG 0.535799 1.3:+63196234 MS.gene21599:CDS
CGCAATCTATGGTGGATTGG+TGG 0.541391 1.3:+63195566 MS.gene21599:CDS
AAGCTTGTTCTGTTCTTCAG+AGG 0.544937 1.3:-63195387 None:intergenic
TAGATTGCGTTCACATGTTG+TGG 0.545132 1.3:-63195552 None:intergenic
CTGGCTCAACTTGTTAGATG+TGG 0.586908 1.3:-63193830 None:intergenic
TACAGGCTGATAATCTTCGC+CGG 0.591845 1.3:+63196138 MS.gene21599:intron
GTGCACAAATGTTTCAGTTG+AGG 0.592785 1.3:-63195832 None:intergenic
ACACCTAAGCTTCTTCAAAG+AGG 0.598796 1.3:+63196005 MS.gene21599:CDS
CATGTGAACGCAATCTATGG+TGG 0.599889 1.3:+63195558 MS.gene21599:CDS
GAACGCAATCTATGGTGGAT+TGG 0.599907 1.3:+63195563 MS.gene21599:CDS
GCTGAATATGCTCTTGCACA+AGG 0.606518 1.3:+63195904 MS.gene21599:CDS
TGAGCTCGTAGTTACTCTGA+AGG 0.607552 1.3:+63196208 MS.gene21599:CDS
TATATGATGATGACAAGCTA+CGG 0.623546 1.3:+63195453 MS.gene21599:CDS
ATTACCTGAAGAAGTTGAGA+AGG 0.645753 1.3:-63195596 None:intergenic
AATTCTCAAAGTGAGCTCCG+AGG 0.740720 1.3:-63196251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTTATAAACAAATTTC+AGG + chr1.3:63195288-63195307 MS.gene21599:intron 15.0%
!! CTTTATGATATTTATAATCT+TGG + chr1.3:63195865-63195884 MS.gene21599:CDS 15.0%
!! TAAGAAAACATAATTCAAAT+TGG - chr1.3:63195769-63195788 None:intergenic 15.0%
!! TAATTAAGATATTTATGCTT+AGG + chr1.3:63193962-63193981 MS.gene21599:intron 15.0%
!!! AATGGAATATGATATAATTT+TGG + chr1.3:63194592-63194611 MS.gene21599:intron 15.0%
!!! TCATATTAGGTTTTTAAATT+AGG + chr1.3:63195215-63195234 MS.gene21599:intron 15.0%
!! AAGTACTATGTGATTTAATT+TGG + chr1.3:63195790-63195809 MS.gene21599:intron 20.0%
!! CCAACTACATTAAAAAAAAA+TGG + chr1.3:63194574-63194593 MS.gene21599:intron 20.0%
!! GAATCTCTTAATTAATCATT+TGG - chr1.3:63194986-63195005 None:intergenic 20.0%
!! TAGGGTTAAAACTTAAAAAT+AGG - chr1.3:63196036-63196055 None:intergenic 20.0%
!! TCTAAAGGTGAAAAATAAAT+TGG + chr1.3:63194822-63194841 MS.gene21599:intron 20.0%
!! TGCTAATATATCATCATATT+AGG + chr1.3:63195202-63195221 MS.gene21599:intron 20.0%
!! TGTGAGTATTATGTTAATTA+TGG - chr1.3:63194329-63194348 None:intergenic 20.0%
!!! ATATGATATAATTTTGGCTT+TGG + chr1.3:63194598-63194617 MS.gene21599:intron 20.0%
!!! ATATTATTAGCCTCATTTAT+TGG - chr1.3:63193880-63193899 None:intergenic 20.0%
!!! ATGGATTTTTGTTATCTTTT+TGG + chr1.3:63194407-63194426 MS.gene21599:intron 20.0%
!!! CCATTTTTTTTTAATGTAGT+TGG - chr1.3:63194577-63194596 None:intergenic 20.0%
!!! GATTTAATTTGGATATACAT+AGG + chr1.3:63195801-63195820 MS.gene21599:intron 20.0%
!!! TAATCTACCTTTGAAAAAAT+TGG - chr1.3:63194059-63194078 None:intergenic 20.0%
!!! TTATGTTTTTCACAATATGT+AGG + chr1.3:63195332-63195351 MS.gene21599:intron 20.0%
! AAATGAACCCATGAAAATAT+TGG + chr1.3:63194022-63194041 MS.gene21599:intron 25.0%
! AATGAGGCTAATAATATTCA+AGG + chr1.3:63193883-63193902 MS.gene21599:CDS 25.0%
! ATTAAAACATTGTCTAAGTG+AGG - chr1.3:63194137-63194156 None:intergenic 25.0%
! ATTGACTAAATATTGTACTC+TGG + chr1.3:63194960-63194979 MS.gene21599:intron 25.0%
! CAATATTTAGTCAATGAGTA+TGG - chr1.3:63194955-63194974 None:intergenic 25.0%
! CTATCTCATTCTTACAAAAT+CGG + chr1.3:63195239-63195258 MS.gene21599:intron 25.0%
! TGATATATTAGCATATCGAT+CGG - chr1.3:63195195-63195214 None:intergenic 25.0%
! TGGTAGATGATTTAATCTAA+AGG + chr1.3:63194807-63194826 MS.gene21599:intron 25.0%
!! ACAGTATATAGTGTTGAAAT+TGG - chr1.3:63195654-63195673 None:intergenic 25.0%
!! ATCATGAACCAATATTTTCA+TGG - chr1.3:63194033-63194052 None:intergenic 25.0%
!! CAGTATATAGTGTTGAAATT+GGG - chr1.3:63195653-63195672 None:intergenic 25.0%
!! GAAATCATGTTTCTATGATA+TGG + chr1.3:63194515-63194534 MS.gene21599:intron 25.0%
!! TCATGAACCAATATTTTCAT+GGG - chr1.3:63194032-63194051 None:intergenic 25.0%
!! TTGCTTTATCAATGATTTGT+TGG - chr1.3:63195942-63195961 None:intergenic 25.0%
!! TTTCATGGGTTCATTTTATA+AGG - chr1.3:63194018-63194037 None:intergenic 25.0%
!! TTTTTCACCACTATTTATAG+TGG + chr1.3:63195089-63195108 MS.gene21599:intron 25.0%
!!! ATGAAAATATTGGTTCATGA+TGG + chr1.3:63194032-63194051 MS.gene21599:intron 25.0%
!!! CAATGTTTTAATAAGCTTGT+TGG + chr1.3:63194145-63194164 MS.gene21599:intron 25.0%
!!! GGTTGTATATCTTTTTTCTA+TGG + chr1.3:63194388-63194407 MS.gene21599:intron 25.0%
AAAAGATATACAACCCTCTA+AGG - chr1.3:63194383-63194402 None:intergenic 30.0%
AAAATTGATGCAAGAATTGC+CGG - chr1.3:63196160-63196179 None:intergenic 30.0%
AACTAATTCTACCCCTAATT+AGG - chr1.3:63195731-63195750 None:intergenic 30.0%
AATGATGCCACTATAAATAG+TGG - chr1.3:63195099-63195118 None:intergenic 30.0%
AATTCCTAGTAAGTGGTATT+AGG - chr1.3:63194190-63194209 None:intergenic 30.0%
ACTTCTAAATTCCTAGTAAG+TGG - chr1.3:63194197-63194216 None:intergenic 30.0%
ATCTTAGACCAAAACTACAA+GGG + chr1.3:63194848-63194867 MS.gene21599:intron 30.0%
ATTGATAAAGCAACATTAGC+AGG + chr1.3:63195949-63195968 MS.gene21599:CDS 30.0%
ATTGATGTGATGTCCTAATT+AGG + chr1.3:63195715-63195734 MS.gene21599:intron 30.0%
ATTTATGCTTAGGTAAACCA+AGG + chr1.3:63193972-63193991 MS.gene21599:intron 30.0%
CAGATTCTTTCTCTTTCAAT+GGG - chr1.3:63194708-63194727 None:intergenic 30.0%
CATCATATAGAAAACTGACT+TGG + chr1.3:63196104-63196123 MS.gene21599:intron 30.0%
GAATCCACTAAATCTTATCA+TGG + chr1.3:63194082-63194101 MS.gene21599:intron 30.0%
TATTGAAAATCAACCAAGCT+GGG + chr1.3:63195066-63195085 MS.gene21599:intron 30.0%
TCAGATTCTTTCTCTTTCAA+TGG - chr1.3:63194709-63194728 None:intergenic 30.0%
TCATCTACCAATTGTTATCA+TGG - chr1.3:63194797-63194816 None:intergenic 30.0%
TCATTCATGTAATTAGAAGC+AGG - chr1.3:63194890-63194909 None:intergenic 30.0%
TGCTGAAAAACCAATAAATG+AGG + chr1.3:63193867-63193886 MS.gene21599:CDS 30.0%
TTGATGTGATGTCCTAATTA+GGG + chr1.3:63195716-63195735 MS.gene21599:intron 30.0%
! ACCATATTGATTAAGATTCG+AGG + chr1.3:63195028-63195047 MS.gene21599:intron 30.0%
! TATATGATGATGACAAGCTA+CGG + chr1.3:63195453-63195472 MS.gene21599:CDS 30.0%
! TATGAAACTTGCTTTAGCTA+TGG + chr1.3:63194493-63194512 MS.gene21599:intron 30.0%
!! AGGGTAATTTCTTTGAGTTT+TGG + chr1.3:63194448-63194467 MS.gene21599:intron 30.0%
!! CAAAGTTGATAGGTTGTATT+TGG + chr1.3:63194761-63194780 MS.gene21599:intron 30.0%
!! GGGTAATTTCTTTGAGTTTT+GGG + chr1.3:63194449-63194468 MS.gene21599:intron 30.0%
!!! AATTTTGGCTTTGGTTTCTT+TGG + chr1.3:63194607-63194626 MS.gene21599:intron 30.0%
!!! ATTTTGGCTTTGGTTTCTTT+GGG + chr1.3:63194608-63194627 MS.gene21599:intron 30.0%
!!! GAAGCACTGTTTTGAATTAT+TGG + chr1.3:63195496-63195515 MS.gene21599:CDS 30.0%
!!! TGATGGACCAATTTTTTCAA+AGG + chr1.3:63194049-63194068 MS.gene21599:intron 30.0%
!!! TTATCTTTTTGGCTCATGTT+TGG + chr1.3:63194418-63194437 MS.gene21599:intron 30.0%
ACTTGGTTTCTTGTAACTAC+AGG + chr1.3:63196121-63196140 MS.gene21599:intron 35.0%
ATTACCTGAAGAAGTTGAGA+AGG - chr1.3:63195599-63195618 None:intergenic 35.0%
CAATCCTAATACCACTTACT+AGG + chr1.3:63194183-63194202 MS.gene21599:intron 35.0%
CATCTTAGACCAAAACTACA+AGG + chr1.3:63194847-63194866 MS.gene21599:intron 35.0%
CTATTGAAAATCAACCAAGC+TGG + chr1.3:63195065-63195084 MS.gene21599:intron 35.0%
GAGACCATGATAAGATTTAG+TGG - chr1.3:63194089-63194108 None:intergenic 35.0%
GCCTCGAATCTTAATCAATA+TGG - chr1.3:63195032-63195051 None:intergenic 35.0%
GGAGAAGTCTTGAAGATTAA+TGG + chr1.3:63193904-63193923 MS.gene21599:CDS 35.0%
GGATAGACCATGATAACAAT+TGG + chr1.3:63194787-63194806 MS.gene21599:intron 35.0%
TATAAGGAACCTTAGAAGCA+GGG - chr1.3:63194002-63194021 None:intergenic 35.0%
TCTGATGTTATGTGCAACTA+TGG + chr1.3:63194300-63194319 MS.gene21599:intron 35.0%
TGATGTGATGTCCTAATTAG+GGG + chr1.3:63195717-63195736 MS.gene21599:intron 35.0%
TTATAAGGAACCTTAGAAGC+AGG - chr1.3:63194003-63194022 None:intergenic 35.0%
TTCATGTAATTAGAAGCAGG+TGG - chr1.3:63194887-63194906 None:intergenic 35.0%
! AAGAATCTGAAGTCTGAAAG+AGG + chr1.3:63194719-63194738 MS.gene21599:intron 35.0%
! AGAATCTGAAGTCTGAAAGA+GGG + chr1.3:63194720-63194739 MS.gene21599:intron 35.0%
! ATGAGAGAGACAAAGTTGAT+AGG + chr1.3:63194751-63194770 MS.gene21599:intron 35.0%
! TTACCTCTTTGAAGAAGCTT+AGG - chr1.3:63196011-63196030 None:intergenic 35.0%
! TTGATAGGTTGTATTTGGTG+TGG + chr1.3:63194766-63194785 MS.gene21599:intron 35.0%
!!! CTTGTAGTTTTGGTCTAAGA+TGG - chr1.3:63194849-63194868 None:intergenic 35.0%
!!! TTTTGGCTCATGTTTGGTAA+TGG + chr1.3:63194424-63194443 MS.gene21599:intron 35.0%
ACACCTAAGCTTCTTCAAAG+AGG + chr1.3:63196005-63196024 MS.gene21599:CDS 40.0%
ATTGTCTAAGTGAGGAAGTC+TGG - chr1.3:63194129-63194148 None:intergenic 40.0%
CAACATGTGAACGCAATCTA+TGG + chr1.3:63195555-63195574 MS.gene21599:CDS 40.0%
GTGCACAAATGTTTCAGTTG+AGG - chr1.3:63195835-63195854 None:intergenic 40.0%
TAATATATCTCCTCACGCTC+TGG + chr1.3:63195147-63195166 MS.gene21599:intron 40.0%
TAGATTGCGTTCACATGTTG+TGG - chr1.3:63195555-63195574 None:intergenic 40.0%
! AAGCTTGTTCTGTTCTTCAG+AGG - chr1.3:63195390-63195409 None:intergenic 40.0%
! CTTTGGTTTCTTTGGGAGTT+GGG + chr1.3:63194615-63194634 MS.gene21599:intron 40.0%
! GTGGCATCATTTTCAATGTG+TGG + chr1.3:63195108-63195127 MS.gene21599:intron 40.0%
! TTGAAGAAGCTTAGGTGTTG+AGG - chr1.3:63196003-63196022 None:intergenic 40.0%
!! GCTCATGTTTGGTAATGGTA+GGG + chr1.3:63194429-63194448 MS.gene21599:intron 40.0%
ACCCTACACACTCTCTAACA+CGG + chr1.3:63196050-63196069 MS.gene21599:intron 45.0%
ATCTACATAATCCGCAGCCT+CGG + chr1.3:63196234-63196253 MS.gene21599:CDS 45.0%
CATGTGAACGCAATCTATGG+TGG + chr1.3:63195558-63195577 MS.gene21599:CDS 45.0%
GATATGGAGAAGCTGTAGCT+GGG + chr1.3:63194531-63194550 MS.gene21599:intron 45.0%
GCTGAATATGCTCTTGCACA+AGG + chr1.3:63195904-63195923 MS.gene21599:CDS 45.0%
TACAGGCTGATAATCTTCGC+CGG + chr1.3:63196138-63196157 MS.gene21599:intron 45.0%
TAGTGGTGAAAAACCCAGCT+TGG - chr1.3:63195082-63195101 None:intergenic 45.0%
TCGTCCTTCTCAACTTCTTC+AGG + chr1.3:63195592-63195611 MS.gene21599:CDS 45.0%
TGAGCTCGTAGTTACTCTGA+AGG + chr1.3:63196208-63196227 MS.gene21599:CDS 45.0%
TGATATGGAGAAGCTGTAGC+TGG + chr1.3:63194530-63194549 MS.gene21599:intron 45.0%
! AGCTTGGACCCTTGTAGTTT+TGG - chr1.3:63194859-63194878 None:intergenic 45.0%
! CACAACCTTGTCTGTCACTT+GGG - chr1.3:63194353-63194372 None:intergenic 45.0%
! GCTTTGGTTTCTTTGGGAGT+TGG + chr1.3:63194614-63194633 MS.gene21599:intron 45.0%
!! CTGGCTCAACTTGTTAGATG+TGG - chr1.3:63193833-63193852 None:intergenic 45.0%
!! GAACGCAATCTATGGTGGAT+TGG + chr1.3:63195563-63195582 MS.gene21599:CDS 45.0%
!! GATATACAACCCTCTAAGGC+AGG - chr1.3:63194379-63194398 None:intergenic 45.0%
!! GGCTCATGTTTGGTAATGGT+AGG + chr1.3:63194428-63194447 MS.gene21599:intron 45.0%
CACAACCCAAGTGACAGACA+AGG + chr1.3:63194345-63194364 MS.gene21599:intron 50.0%
GAAGCAGGTGGCATTTAGCT+TGG - chr1.3:63194875-63194894 None:intergenic 50.0%
GCACAACCTTGTCTGTCACT+TGG - chr1.3:63194354-63194373 None:intergenic 50.0%
! AGCCGTGTTAGAGAGTGTGT+AGG - chr1.3:63196055-63196074 None:intergenic 50.0%
! CAAGGTACTCCCTGCTTCTA+AGG + chr1.3:63193990-63194009 MS.gene21599:intron 50.0%
! GCCGTGTTAGAGAGTGTGTA+GGG - chr1.3:63196054-63196073 None:intergenic 50.0%
!! CGCAATCTATGGTGGATTGG+TGG + chr1.3:63195566-63195585 MS.gene21599:CDS 50.0%
!! CTTAGAAGCAGGGAGTACCT+TGG - chr1.3:63193992-63194011 None:intergenic 50.0%
!! TGGTTTTTCAGCACGAAGCC+TGG - chr1.3:63193860-63193879 None:intergenic 50.0%
ACCTAATGCTCCAGAGCGTG+AGG - chr1.3:63195160-63195179 None:intergenic 55.0%
AGAAGCTGTAGCTGGGAGGT+TGG + chr1.3:63194538-63194557 MS.gene21599:intron 55.0%
ATGGAGAAGCTGTAGCTGGG+AGG + chr1.3:63194534-63194553 MS.gene21599:intron 55.0%
GTTGTGCTGCCTGCCTTAGA+GGG + chr1.3:63194367-63194386 MS.gene21599:intron 55.0%
! ACAAGTTGAGCCAGAGCACC+AGG + chr1.3:63193839-63193858 MS.gene21599:CDS 55.0%
!! TCCTCACGCTCTGGAGCATT+AGG + chr1.3:63195156-63195175 MS.gene21599:intron 55.0%
CAAAGTGAGCTCCGAGGCTG+CGG - chr1.3:63196248-63196267 None:intergenic 60.0%
GGTTGTGCTGCCTGCCTTAG+AGG + chr1.3:63194366-63194385 MS.gene21599:intron 60.0%
CAGCACGAAGCCTGGTGCTC+TGG - chr1.3:63193852-63193871 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 63193823 63196268 63193823 ID=MS.gene21599
chr1.3 mRNA 63193823 63196268 63193823 ID=MS.gene21599.t1;Parent=MS.gene21599
chr1.3 exon 63193823 63193925 63193823 ID=MS.gene21599.t1.exon1;Parent=MS.gene21599.t1
chr1.3 CDS 63193823 63193925 63193823 ID=cds.MS.gene21599.t1;Parent=MS.gene21599.t1
chr1.3 exon 63195354 63195613 63195354 ID=MS.gene21599.t1.exon2;Parent=MS.gene21599.t1
chr1.3 CDS 63195354 63195613 63195354 ID=cds.MS.gene21599.t1;Parent=MS.gene21599.t1
chr1.3 exon 63195823 63196026 63195823 ID=MS.gene21599.t1.exon3;Parent=MS.gene21599.t1
chr1.3 CDS 63195823 63196026 63195823 ID=cds.MS.gene21599.t1;Parent=MS.gene21599.t1
chr1.3 exon 63196143 63196268 63196143 ID=MS.gene21599.t1.exon4;Parent=MS.gene21599.t1
chr1.3 CDS 63196143 63196268 63196143 ID=cds.MS.gene21599.t1;Parent=MS.gene21599.t1
Gene Sequence

>MS.gene21599

ATGAGTTCCACATCTAACAAGTTGAGCCAGAGCACCAGGCTTCGTGCTGAAAAACCAATAAATGAGGCTAATAATATTCAAGGAGAAGTCTTGAAGATTAATGGTAAGTGTATAGAAAAAGTTTGTAAAGTCATTAAAATAATTAAGATATTTATGCTTAGGTAAACCAAGGTACTCCCTGCTTCTAAGGTTCCTTATAAAATGAACCCATGAAAATATTGGTTCATGATGGACCAATTTTTTCAAAGGTAGATTATATGAATCCACTAAATCTTATCATGGTCTCTATCACTCTTGTATCTTCCAGACTTCCTCACTTAGACAATGTTTTAATAAGCTTGTTGGATTTCAAAATTCTTACAATCCTAATACCACTTACTAGGAATTTAGAAGTCTTACTTTAATTAATCAAATAATGAACATGATTTGATAAAATAATTTTAAGAAACTCAAATACTATGAAATTTTAATTATCGATCTGATGTTATGTGCAACTATGGTGTCCATAATTAACATAATACTCACAACCCAAGTGACAGACAAGGTTGTGCTGCCTGCCTTAGAGGGTTGTATATCTTTTTTCTATGGATTTTTGTTATCTTTTTGGCTCATGTTTGGTAATGGTAGGGTAATTTCTTTGAGTTTTGGGTTTTGTCATTGTAAAAAAAATTATGAAACTTGCTTTAGCTATGGAAATCATGTTTCTATGATATGGAGAAGCTGTAGCTGGGAGGTTGGATTTGAAGCAGAGCCAACTACATTAAAAAAAAATGGAATATGATATAATTTTGGCTTTGGTTTCTTTGGGAGTTGGGATTGTGAATGAAGACTCTTTATGTTCTTACTTCAAAGCTCTGTGATTATTAATATTAAGCTTTCAAACCCATTGAAAGAGAAAGAATCTGAAGTCTGAAAGAGGGAGCTTGCAATGAGAGAGACAAAGTTGATAGGTTGTATTTGGTGTGGATAGACCATGATAACAATTGGTAGATGATTTAATCTAAAGGTGAAAAATAAATTGGTCCATCTTAGACCAAAACTACAAGGGTCCAAGCTAAATGCCACCTGCTTCTAATTACATGAATGAACTAAGATTCTATTAAGTTGACATCAATCTACATATATTTTTCCATACTCATTGACTAAATATTGTACTCTGGCCAAATGATTAATTAAGAGATTCAAACATCTATCACTTGTGTCACACCATATTGATTAAGATTCGAGGCAAAACAAAAATTACTATTGAAAATCAACCAAGCTGGGTTTTTCACCACTATTTATAGTGGCATCATTTTCAATGTGTGGAACTTGAGTTTTCTTTTAATATATCTCCTCACGCTCTGGAGCATTAGGTTTGATGTGTAATCCGATCGATATGCTAATATATCATCATATTAGGTTTTTAAATTAGGTCTATCTCATTCTTACAAAATCGGTTTGTATGTTGAGAATGAGAAGTGTTAGTATTTATAAACAAATTTCAGGTCAATTTATATTCTATGAGATTTATGTTTTTCACAATATGTAGGAAACACAATTTCTTTGAAGAACTATGCACTTTCCTCTGAAGAACAGAACAAGCTTATTTCTGAGATACATAATGCTCTAAATGATCACAATCACGTTATATATGATGATGACAAGCTACGGTTAGTTATAAACACAATCATGAAGCACTGTTTTGAATTATTGGAGATAAAAACACGTTCTGCAAATGTAGATTCTGCCACAACATGTGAACGCAATCTATGGTGGATTGGTGGCTTTCGTCCTTCTCAACTTCTTCAGGTAATGCTTGTTGATATTTTGTATGAATGAGTTAGACCCAATTTCAACACTATATACTGTCATGCGCATTCATTTTGTTTATATTTTTTAGAGCTAAAAAGATTGATGTGATGTCCTAATTAGGGGTAGAATTAGTTAGAAACATATACACACCAATTTGAATTATGTTTTCTTACAAGTACTATGTGATTTAATTTGGATATACATAGGTTATTCTGCCTCAACTGAAACATTTGTGCACTCAACAACAACTTTATGATATTTATAATCTTGGACAATCATGTCAACAAGCTGAATATGCTCTTGCACAAGGCATGATAGAACTCCAACAAATCATTGATAAAGCAACATTAGCAGGTGACAAAGAGTTTCAGCAGACGTATGTACCTCAACACCTAAGCTTCTTCAAAGAGGTAATACCTATTTTTAAGTTTTAACCCTACACACTCTCTAACACGGCTCGATTATAAGTTGAAATTCATGCGAGTCTCATCATATAGAAAACTGACTTGGTTTCTTGTAACTACAGGCTGATAATCTTCGCCGGCAATTCTTGCATCAATTTTCTCGTCTCTTTACAATTTCTCAGCAAGCTGAGCTCGTAGTTACTCTGAAGGAACATCTACATAATCCGCAGCCTCGGAGCTCACTTTGA
Protein sequence

>MS.gene21599.t1

MSSTSNKLSQSTRLRAEKPINEANNIQGEVLKINGNTISLKNYALSSEEQNKLISEIHNALNDHNHVIYDDDKLRLVINTIMKHCFELLEIKTRSANVDSATTCERNLWWIGGFRPSQLLQVILPQLKHLCTQQQLYDIYNLGQSCQQAEYALAQGMIELQQIIDKATLAGDKEFQQTYVPQHLSFFKEADNLRRQFLHQFSRLFTISQQAELVVTLKEHLHNPQPRSSL