AlfalfaGEDB | MS.gene22029

M. sativa cultivar XinJiangDaYe / MS.gene22029

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF13516.9 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22029.t1	XP_003599915.2	70.4	766	215	3	11	766	33	796	5.70E-185	657.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22029.t1	Q6JN46	31.1	264	140	7	11	235	35	295	4.2e-19	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22029.t1	G7IZY4	70.4	766	215	3	11	766	26	789	4.1e-185	657.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053873	MS.gene22029	0.816382	5.69E-52	-1.69E-46
MS.gene055909	MS.gene22029	0.815799	7.68E-52	-1.69E-46
MS.gene055911	MS.gene22029	0.813033	3.14E-51	-1.69E-46
MS.gene057825	MS.gene22029	0.80004	1.74E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22029.t1	MTR_3g048440	74.491	835	140	3	5	766	29	863	1174
MS.gene22029.t1	MTR_3g048785	76.098	774	170	4	2	764	26	795	1150
MS.gene22029.t1	MTR_3g048910	76.501	766	168	3	11	766	26	789	1142
MS.gene22029.t1	MTR_3g452730	74.550	778	181	4	5	766	4	780	1100
MS.gene22029.t1	MTR_0640s0020	74.935	770	187	4	1	765	24	792	1098
MS.gene22029.t1	MTR_3g041560	74.510	765	191	2	5	766	28	791	1090
MS.gene22029.t1	MTR_3g041560	74.510	765	191	2	5	766	4	767	1089
MS.gene22029.t1	MTR_3g449240	72.798	772	192	5	1	758	22	789	1085
MS.gene22029.t1	MTR_3g048860	74.215	764	190	2	5	765	4	763	1082
MS.gene22029.t1	MTR_3g452770	75.844	770	177	2	5	766	21	789	1080

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22029.t1	AT2G34930	30.594	876	407	26	11	690	33	903	2.81e-86	292
MS.gene22029.t1	AT5G25910	30.447	739	417	24	13	680	24	736	6.38e-66	234
MS.gene22029.t1	AT1G71400	27.879	825	444	25	11	729	34	813	9.04e-66	234
MS.gene22029.t1	AT3G11010	29.452	876	438	28	11	723	38	896	1.39e-64	232
MS.gene22029.t1	AT2G25470	27.724	927	472	27	6	745	8	923	1.80e-64	232
MS.gene22029.t1	AT3G11010	29.845	841	425	26	32	723	9	833	2.40e-64	231
MS.gene22029.t1	AT3G05660	28.795	830	451	29	11	723	30	836	2.96e-64	231
MS.gene22029.t1	AT3G11010	30.060	835	422	28	32	723	9	824	4.46e-64	230
MS.gene22029.t1	AT3G11010	29.655	870	435	30	11	723	38	887	4.48e-64	231
MS.gene22029.t1	AT5G46330	29.885	783	436	27	17	697	32	803	2.24e-63	231

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Find 154 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATTTGGTAAATGAG+AGG	0.628216	3.3:-40466241	None:intergenic
AAATCAACTTCAGAAGCCAT+TGG	0.598952	3.3:-40466915	None:intergenic
AAATTCAAATACTCAACAGA+TGG	0.536142	3.3:-40466177	None:intergenic
AACTGTAATTCTAATAGTGA+AGG	0.569760	3.3:-40466129	None:intergenic
AAGCCATTGGTGATATGTTT+GGG	0.376599	3.3:-40466902	None:intergenic
AAGGAATTGATCCTTGTAGT+TGG	0.494853	3.3:-40466452	None:intergenic
AAGGTCTAAGTGAAACAAAT+AGG	0.472948	3.3:-40467198	None:intergenic
AAGTGCCATTGGAATTGTTT+CGG	0.372808	3.3:+40467405	MS.gene22029:CDS
AATCAAGATTATCCATGTGC+AGG	0.485425	3.3:-40466014	None:intergenic
AATCATTGTACCTTGGCATG+GGG	0.606330	3.3:+40467780	MS.gene22029:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTCTAAGTGAAACAAAT+AGG	-	chr3.3:40467201-40467220	None:intergenic	30.0%
ACATTAACCTATGGAGTAAT+AGG	+	chr3.3:40467000-40467019	MS.gene22029:CDS	30.0%
ACATTGTTAACCTTCAAACA+AGG	+	chr3.3:40465703-40465722	MS.gene22029:CDS	30.0%
ATAAGTAATTCAAGGATGAG+AGG	-	chr3.3:40466491-40466510	None:intergenic	30.0%
ATACACATAATCTTGACCTT+TGG	-	chr3.3:40467330-40467349	None:intergenic	30.0%
ATATCCAAGATGGAAAGTTT+GGG	-	chr3.3:40466683-40466702	None:intergenic	30.0%
CATCGGATATTCTTTCTATA+AGG	-	chr3.3:40466782-40466801	None:intergenic	30.0%
CTTTCGGTTTATTTATAGAG+TGG	+	chr3.3:40467874-40467893	MS.gene22029:CDS	30.0%
GCCAATAGATAAGTAATTCA+AGG	-	chr3.3:40466499-40466518	None:intergenic	30.0%
GTAAATAAATCAAATGTGCC+AGG	-	chr3.3:40467308-40467327	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	40465652	40467952	40465652	ID=MS.gene22029
chr3.3	mRNA	40465652	40467952	40465652	ID=MS.gene22029.t1;Parent=MS.gene22029
chr3.3	exon	40465652	40467952	40465652	ID=MS.gene22029.t1.exon1;Parent=MS.gene22029.t1
chr3.3	CDS	40465652	40467952	40465652	ID=cds.MS.gene22029.t1;Parent=MS.gene22029.t1

Gene Sequence

>MS.gene22029

ATGTCTAGCAATAATCACAGGGTGCTTGGATGCAATCACAAAGATCGAGAGACATTGTTAACCTTCAAACAAGGCATCAATGACACTCTTGGTCGGATATCAACGTGGTCAACCGAAAATGATTGTTGTGCTTGGGAAGGAGTCCATTGTGACAACATTACAGGAAGAGTTACAGAAATTGATCTCATCTACAATCGATTGGAAGGTGAGATGAATCTTTGTATTCTAGAACTTGAGTTTCTCAGTCATTTGGATTTGAGTGATAATGATTTTAATGTGATAAGAATTCCATCCATTCAACACAACATCACACATTCATCTAAACTTGTCTACCTTGACTTATCCCCCCTCACCATTTATACCCTGCACATGGATAATCTTGATTGGCTTTCTCCACATTCTTCCTTAAAATATCTCAACCTTACCAGGATTGACATTCATAAGGAAACCAACTGGCTTCAAATAGTGAAGACACTTCCTTCACTATTAGAATTACAGTTGAGTTCTTGTAACCTGAACAACTTCCCATCTGTTGAGTATTTGAATTTGTCATCAATTGTAACTATTGACCTTTATCAAAACAACTTCACCTCTCATTTACCAAATGGGTTTTTTAATCTCACCAAAGATCTCACTTATCTTGACCTTTCACAGACTAATATATATGGTGAGATACCTTCAAGCTTGCTAAACCTTCAAAATTTGAGAGACCTTTATCTCTCTGGAAACCAACTACAAGGATCAGTTCCATTAGAAATAGGCCAACTTGCCCATGTTCAAGACCTTGATCTCTCTGAAAACCAACTACAAGGATCAATTCCTTCAACTATAGGAAACCTCTCATCCTTGAATTACTTATCTATTGGCTCTAATAATTTCTCTGGTCAAATTTCAAATTTACATTTTTCCAAACTCTCTAGTTTAGATGAACTAGACTTGAGAAATTCAACTGTTGCATTCCAATTTGATTTGGATTGGGTTCCTCCTTTTCAACTCCGTAGACTTTATCTAGCACATACAAAGCCAGGCCCAAACTTTCCATCTTGGATATATACACAAAATTCACTGCAAGATCTCGATTTATCGAGCTCGGGAATTTCGTTGGTAGATAGAAAGAAGTTCTCGAGCCTTATAGAAAGAATATCCGATGAACTTATTTTGTCAGACAATTCGATTGCTGAAGACATATCTAACCTAACACTAAATTGTTCCGACTTATTTTTGGTTCACAATAATTTCACAGGAGGACTCCCAAACATATCACCAATGGCTTCTGAAGTTGATTTGTCTTACAACTCTTTCTCAGGATCAATTCCACATAGTTGGAAGAACTTGAAAGATTTACAATACATTAACCTATGGAGTAATAGGCTGTCTGGTGAAGTTCTAACACACTTCTCTGCTTCAGAACGATTATTATTCATGAATTTGGGAGAAAATGAATTTTCTGGAACCATACCAATCATGATGTCACAAAACATAGAAGTGGTCATATTGAGAGCTAACCAATTTGAAGGGACCATTCCACGACAACTATTCAATCTCTCCTATTTGTTTCACTTAGACCTTGCACATAACAAACTTTCAGGATCTTTGCCACACTGTGTCTACAACTTGACTCAAATGGATACTGATCATGTGGATTTTTACCATCCTGGCACATTTGATTTATTTACCAAAGGTCAAGATTATGTGTATAATGTTAACCCAGATAGGCGAACTATTGACCTTTCAGCCAATCACTTGACTGGAGAAGTGCCATTGGAATTGTTTCGGCTTGTTCAAGTTCAAACATTAAACTTATCTCACAATAATTTGACTGGAACAATACCAAAAGAGATTGGAGGCATGAAAAATATGGAATCTCTCGACCTCTCTAGTAATAAGTTTTATGGTGAAATTCCACTGAGCATGGCTCTCTTAAACTTTCTAGAGGTGTTGAATTTATCTTGCAATAATTTTGACGGAACAATCCCAATTGGATCTCAAATTCAAACTTTTGATGCATCAAGCTTCATTGGAAATCCAAAATTATGCGGACCTCCTCTTAATAATTGTACCACAAAAGAAGAAAATCCTAAAACTGCAAAGCCATCTACAGAGAATGAAGATGATGACTCCATAAAAGAATCATTGTACCTTGGCATGGGGGTTGGATTTGCAGCAGGTTTCTGGGGGATTTGTGGTTCTTTGTTTCTTATTAGAAAATGGAGGCATGCATGCTTTCGGTTTATTTATAGAGTGGGCGACAAGCTCTATGTTACTTTGATCTTAAAGTTAAATAGCTTTCGCAGAAACTGA

Protein sequence

>MS.gene22029.t1

MSSNNHRVLGCNHKDRETLLTFKQGINDTLGRISTWSTENDCCAWEGVHCDNITGRVTEIDLIYNRLEGEMNLCILELEFLSHLDLSDNDFNVIRIPSIQHNITHSSKLVYLDLSPLTIYTLHMDNLDWLSPHSSLKYLNLTRIDIHKETNWLQIVKTLPSLLELQLSSCNLNNFPSVEYLNLSSIVTIDLYQNNFTSHLPNGFFNLTKDLTYLDLSQTNIYGEIPSSLLNLQNLRDLYLSGNQLQGSVPLEIGQLAHVQDLDLSENQLQGSIPSTIGNLSSLNYLSIGSNNFSGQISNLHFSKLSSLDELDLRNSTVAFQFDLDWVPPFQLRRLYLAHTKPGPNFPSWIYTQNSLQDLDLSSSGISLVDRKKFSSLIERISDELILSDNSIAEDISNLTLNCSDLFLVHNNFTGGLPNISPMASEVDLSYNSFSGSIPHSWKNLKDLQYINLWSNRLSGEVLTHFSASERLLFMNLGENEFSGTIPIMMSQNIEVVILRANQFEGTIPRQLFNLSYLFHLDLAHNKLSGSLPHCVYNLTQMDTDHVDFYHPGTFDLFTKGQDYVYNVNPDRRTIDLSANHLTGEVPLELFRLVQVQTLNLSHNNLTGTIPKEIGGMKNMESLDLSSNKFYGEIPLSMALLNFLEVLNLSCNNFDGTIPIGSQIQTFDASSFIGNPKLCGPPLNNCTTKEENPKTAKPSTENEDDDSIKESLYLGMGVGFAAGFWGICGSLFLIRKWRHACFRFIYRVGDKLYVTLILKLNSFRRN