Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22269.t1 | AFK39748.1 | 87.5 | 224 | 28 | 0 | 1 | 224 | 21 | 244 | 1.70E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22269.t1 | I3SHK6 | 87.5 | 224 | 28 | 0 | 1 | 224 | 21 | 244 | 1.2e-92 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056986 | MS.gene22269 | 0.819291 | 1.25E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene22269 | 0.802102 | 6.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22269.t1 | AT5G19430 | 58.850 | 226 | 84 | 4 | 7 | 224 | 31 | 255 | 1.02e-78 | 237 |
| MS.gene22269.t1 | AT5G19430 | 58.850 | 226 | 84 | 4 | 7 | 224 | 31 | 255 | 1.02e-78 | 237 |
| MS.gene22269.t1 | AT5G19430 | 58.850 | 226 | 84 | 4 | 7 | 224 | 16 | 240 | 2.00e-78 | 236 |
| MS.gene22269.t1 | AT5G19430 | 58.850 | 226 | 84 | 4 | 7 | 224 | 32 | 256 | 2.74e-78 | 236 |
| MS.gene22269.t1 | AT5G19430 | 58.850 | 226 | 84 | 4 | 7 | 224 | 32 | 256 | 2.74e-78 | 236 |
| MS.gene22269.t1 | AT5G12310 | 55.459 | 229 | 81 | 4 | 11 | 224 | 32 | 254 | 9.53e-74 | 224 |
| MS.gene22269.t1 | AT5G19430 | 57.868 | 197 | 74 | 4 | 36 | 224 | 1 | 196 | 1.33e-63 | 196 |
Find 54 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAACTGCTCTTGTTAA+AGG | 0.170382 | 3.4:-38131249 | MS.gene22269:CDS |
| ACACGCTCTTCAACAGTTAA+AGG | 0.198105 | 3.4:+38129222 | None:intergenic |
| CGACCAAGCTTCCAGGATTC+AGG | 0.280448 | 3.4:-38129025 | MS.gene22269:CDS |
| GAGAATCATCATGTTGGATT+TGG | 0.294281 | 3.4:-38131318 | MS.gene22269:CDS |
| ACCGTTCATCGCACACTTGA+TGG | 0.320914 | 3.4:-38129971 | MS.gene22269:CDS |
| TACGGATTGGCAACCGTAGA+TGG | 0.322292 | 3.4:-38129098 | MS.gene22269:CDS |
| AAGTGTTTGCCTACTACTTC+GGG | 0.364680 | 3.4:-38129259 | MS.gene22269:CDS |
| GTTGTTATGTAGATTGAAAA+TGG | 0.365866 | 3.4:-38131354 | None:intergenic |
| AAGGTTGCGAGCATGCTTAC+TGG | 0.371013 | 3.4:-38131230 | MS.gene22269:intron |
| CGGTCATCGACCAAGCTTCC+AGG | 0.387303 | 3.4:-38129032 | MS.gene22269:CDS |
| CTAGATGATGAGGATTATTA+TGG | 0.399827 | 3.4:-38129135 | MS.gene22269:CDS |
| GCCTACTACTTCGGGCTCAA+TGG | 0.404316 | 3.4:-38129251 | MS.gene22269:CDS |
| AAAGTGTTTGCCTACTACTT+CGG | 0.405934 | 3.4:-38129260 | MS.gene22269:CDS |
| CAGCAGCATTTGGCTAGGTT+TGG | 0.406697 | 3.4:-38128880 | MS.gene22269:CDS |
| GTGTAACATGCATCCTTCAT+TGG | 0.426196 | 3.4:-38130051 | MS.gene22269:CDS |
| TATTCGAGATTACATGTTTG+AGG | 0.432361 | 3.4:-38129283 | MS.gene22269:CDS |
| TTGAGCTTGCTCCTGAATCC+TGG | 0.437539 | 3.4:+38129014 | None:intergenic |
| AGCAAAGCATCAGCAGCATT+TGG | 0.437875 | 3.4:-38128890 | MS.gene22269:CDS |
| GAAAAGAGAAGCTGCTGATA+AGG | 0.450304 | 3.4:-38128920 | MS.gene22269:CDS |
| AGGATTCAAAAGTTTATGAC+AGG | 0.454695 | 3.4:-38128964 | MS.gene22269:CDS |
| CAAATGGATGTTTGCACTGA+GGG | 0.472683 | 3.4:+38130002 | None:intergenic |
| TGTAACATGCATCCTTCATT+GGG | 0.475726 | 3.4:-38130050 | MS.gene22269:CDS |
| AAAGTTTATGACAGGGAGAC+GGG | 0.494340 | 3.4:-38128956 | MS.gene22269:CDS |
| GCTCCTGAATCCTGGAAGCT+TGG | 0.500612 | 3.4:+38129022 | None:intergenic |
| TGAAAATGGGAGCGAAGAAG+AGG | 0.505082 | 3.4:-38131340 | MS.gene22269:CDS |
| TGAACGGTTAGGAACTCAAA+TGG | 0.509517 | 3.4:+38129986 | None:intergenic |
| ACGGATTGGCAACCGTAGAT+GGG | 0.509792 | 3.4:-38129097 | MS.gene22269:CDS |
| CTGGAAGCTTGGTCGATGAC+CGG | 0.522702 | 3.4:+38129033 | None:intergenic |
| ACCATTGAGCCCGAAGTAGT+AGG | 0.530376 | 3.4:+38129250 | None:intergenic |
| TGGATGTTTGCACTGAGGGC+AGG | 0.533700 | 3.4:+38130006 | None:intergenic |
| GACAGGGAGACGGGCAAAGA+GGG | 0.538520 | 3.4:-38128947 | MS.gene22269:CDS |
| AACCGTTGTCTCCCCATCTA+CGG | 0.538803 | 3.4:+38129085 | None:intergenic |
| TTGTTATGTAGATTGAAAAT+GGG | 0.548389 | 3.4:-38131353 | None:intergenic |
| GACTGTATGTCGCCCAATGA+AGG | 0.552276 | 3.4:+38130038 | None:intergenic |
| AGCATCAGCAGCATTTGGCT+AGG | 0.553013 | 3.4:-38128885 | MS.gene22269:CDS |
| CATGTTGGATTTGGAAAACA+TGG | 0.554242 | 3.4:-38131309 | MS.gene22269:CDS |
| ATGGTGGTTCAGCTAGTGTA+CGG | 0.555093 | 3.4:-38129116 | MS.gene22269:CDS |
| TGGGCGTCAAGAAGCTCGGC+CGG | 0.560717 | 3.4:-38129052 | MS.gene22269:CDS |
| CAAGTGTGCGATGAACGGTT+AGG | 0.562483 | 3.4:+38129975 | None:intergenic |
| TCCATCAAGTGTGCGATGAA+CGG | 0.566517 | 3.4:+38129970 | None:intergenic |
| GGGCTGGGCGTCAAGAAGCT+CGG | 0.568106 | 3.4:-38129056 | MS.gene22269:CDS |
| AAAAGTTTATGACAGGGAGA+CGG | 0.569865 | 3.4:-38128957 | MS.gene22269:CDS |
| GAAGAGGAGAATCATCATGT+TGG | 0.571812 | 3.4:-38131324 | MS.gene22269:CDS |
| GATGATGAGGATTATTATGG+TGG | 0.579507 | 3.4:-38129132 | MS.gene22269:CDS |
| TGACGATGATCTAGATGATG+AGG | 0.597527 | 3.4:-38129145 | MS.gene22269:CDS |
| CGGATTGGCAACCGTAGATG+GGG | 0.602083 | 3.4:-38129096 | MS.gene22269:CDS |
| GGTTCAGCTAGTGTACGGAT+TGG | 0.606059 | 3.4:-38129111 | MS.gene22269:CDS |
| TTCATCGCACACTTGATGGA+AGG | 0.629564 | 3.4:-38129967 | MS.gene22269:intron |
| AACCGTAGATGGGGAGACAA+CGG | 0.640663 | 3.4:-38129087 | MS.gene22269:CDS |
| TTTAACTGTTGAAGAGCGTG+TGG | 0.656356 | 3.4:-38129220 | MS.gene22269:CDS |
| TGACAGGGAGACGGGCAAAG+AGG | 0.666387 | 3.4:-38128948 | MS.gene22269:CDS |
| GGATTCAAAAGTTTATGACA+GGG | 0.681442 | 3.4:-38128963 | MS.gene22269:CDS |
| GTTGGATTTGGAAAACATGG+TGG | 0.694300 | 3.4:-38131306 | MS.gene22269:CDS |
| TCAAATGGATGTTTGCACTG+AGG | 0.708375 | 3.4:+38130001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATTTAAATTATTGAAT+TGG | + | chr3.4:38130568-38130587 | None:intergenic | 10.0% |
| !!! | AATAATTTAAATTTTCAGAT+TGG | - | chr3.4:38130572-38130591 | MS.gene22269:intron | 10.0% |
| !!! | ATAAATGTATTATATCATTT+TGG | - | chr3.4:38129850-38129869 | MS.gene22269:intron | 10.0% |
| !! | AAAATTTAATGAAACAACAA+TGG | + | chr3.4:38130346-38130365 | None:intergenic | 15.0% |
| !! | ACTAATACAAAGAATTATAA+TGG | - | chr3.4:38129118-38129137 | MS.gene22269:CDS | 15.0% |
| !! | GTATAGTATATAATAAATTC+AGG | + | chr3.4:38129690-38129709 | None:intergenic | 15.0% |
| !!! | ATAAATTGTAACTGTTTTAT+GGG | - | chr3.4:38129939-38129958 | MS.gene22269:intron | 15.0% |
| !!! | ATGTTTTAACTGAAAAAAAT+TGG | - | chr3.4:38129237-38129256 | MS.gene22269:CDS | 15.0% |
| !!! | TATAAATTGTAACTGTTTTA+TGG | - | chr3.4:38129938-38129957 | MS.gene22269:intron | 15.0% |
| !!! | TGTTTTAACTGAAAAAAATT+GGG | - | chr3.4:38129238-38129257 | MS.gene22269:CDS | 15.0% |
| !! | AACGTATAATGTTGTATAAT+AGG | + | chr3.4:38130795-38130814 | None:intergenic | 20.0% |
| !! | ACGTATAATGTTGTATAATA+GGG | + | chr3.4:38130794-38130813 | None:intergenic | 20.0% |
| !! | ATAATTCTTTGTATTAGTTG+TGG | + | chr3.4:38129116-38129135 | None:intergenic | 20.0% |
| !! | TGATCTTACTTTATTAGTTA+AGG | - | chr3.4:38129612-38129631 | MS.gene22269:intron | 20.0% |
| !!! | AAAATATGTTTTTCAAAAGC+AGG | + | chr3.4:38129571-38129590 | None:intergenic | 20.0% |
| !!! | ACGAACTAATAATTTTCATT+TGG | + | chr3.4:38129083-38129102 | None:intergenic | 20.0% |
| !!! | CTTTTTGAATATTAAGTGTA+TGG | - | chr3.4:38129035-38129054 | MS.gene22269:CDS | 20.0% |
| !!! | GGTAATATCACTTTTTATTT+TGG | - | chr3.4:38130266-38130285 | MS.gene22269:intron | 20.0% |
| !!! | GTTTGAAATTAGATTATGTT+GGG | - | chr3.4:38130526-38130545 | MS.gene22269:intron | 20.0% |
| !!! | TATATCATTTTGGCTAATTA+AGG | - | chr3.4:38129860-38129879 | MS.gene22269:intron | 20.0% |
| !!! | TGTTTGAAATTAGATTATGT+TGG | - | chr3.4:38130525-38130544 | MS.gene22269:intron | 20.0% |
| !!! | TTATAATGGATAAGATTGAA+TGG | - | chr3.4:38129132-38129151 | MS.gene22269:CDS | 20.0% |
| ! | AATCCTTAATTCAGAAAAAG+TGG | - | chr3.4:38130864-38130883 | MS.gene22269:intron | 25.0% |
| ! | AGTAGAAATTTCAATAGTAC+CGG | - | chr3.4:38129890-38129909 | MS.gene22269:intron | 25.0% |
| ! | ATAATGACTATTCATAAGAG+AGG | - | chr3.4:38129278-38129297 | MS.gene22269:CDS | 25.0% |
| ! | ATTTCATTATGGATACATGA+TGG | - | chr3.4:38130432-38130451 | MS.gene22269:intron | 25.0% |
| ! | CAGTTACAATTTATATAGCA+TGG | + | chr3.4:38129933-38129952 | None:intergenic | 25.0% |
| ! | CTTACTTTATTAGTTAAGGA+AGG | - | chr3.4:38129616-38129635 | MS.gene22269:intron | 25.0% |
| ! | GAATCTAGAGATTAATGAAT+TGG | - | chr3.4:38129731-38129750 | MS.gene22269:intron | 25.0% |
| ! | GATGGACATAAACTTTATAT+TGG | - | chr3.4:38130454-38130473 | MS.gene22269:intron | 25.0% |
| ! | TAAAGTAAGATCAAAAGCAA+TGG | + | chr3.4:38129605-38129624 | None:intergenic | 25.0% |
| ! | TACATCAAGAATTTATGGTT+GGG | - | chr3.4:38129472-38129491 | MS.gene22269:intron | 25.0% |
| ! | TTATGGGCAAAAAAAATTCA+GGG | - | chr3.4:38129955-38129974 | MS.gene22269:intron | 25.0% |
| ! | TTCTTAAACTAGAATGTTTC+TGG | - | chr3.4:38130043-38130062 | MS.gene22269:CDS | 25.0% |
| ! | TTTATATAGCATGGAATCAA+AGG | + | chr3.4:38129924-38129943 | None:intergenic | 25.0% |
| ! | TTTATGGGCAAAAAAAATTC+AGG | - | chr3.4:38129954-38129973 | MS.gene22269:intron | 25.0% |
| ! | TTTGCTACATCAAGAATTTA+TGG | - | chr3.4:38129467-38129486 | MS.gene22269:intron | 25.0% |
| !! | ATTGAATTGGTAACAAAGTA+CGG | + | chr3.4:38130555-38130574 | None:intergenic | 25.0% |
| !! | TAATTATTCAGAGTACTCTT+GGG | + | chr3.4:38130606-38130625 | None:intergenic | 25.0% |
| !!! | GAACTTTTTTACTAGAAAGT+CGG | - | chr3.4:38130735-38130754 | MS.gene22269:intron | 25.0% |
| !!! | GAGTCTGTATTTGTTTTTAA+TGG | - | chr3.4:38130118-38130137 | MS.gene22269:intron | 25.0% |
| !!! | TCTTTCTTTTTTCTCATGTT+AGG | - | chr3.4:38129309-38129328 | MS.gene22269:intron | 25.0% |
| !!! | TGAAGTTTTGTAAGTTTTGT+AGG | - | chr3.4:38129333-38129352 | MS.gene22269:intron | 25.0% |
| !!! | TTTGAATCCTCTTTCTTTTT+TGG | + | chr3.4:38131238-38131257 | None:intergenic | 25.0% |
| AAAGTTCATGTTTGATGAGA+TGG | + | chr3.4:38130722-38130741 | None:intergenic | 30.0% | |
| AACTCTTTGTAATTGAAGCT+TGG | - | chr3.4:38129184-38129203 | MS.gene22269:CDS | 30.0% | |
| ACATCAAGAATTTATGGTTG+GGG | - | chr3.4:38129473-38129492 | MS.gene22269:intron | 30.0% | |
| AGCAAATGTTAAAATGAGCT+TGG | + | chr3.4:38129210-38129229 | None:intergenic | 30.0% | |
| AGGATTCAAAAGTTTATGAC+AGG | - | chr3.4:38131248-38131267 | MS.gene22269:CDS | 30.0% | |
| ATAATGAAATCCTATAGCCA+CGG | + | chr3.4:38130422-38130441 | None:intergenic | 30.0% | |
| CTACATCAAGAATTTATGGT+TGG | - | chr3.4:38129471-38129490 | MS.gene22269:intron | 30.0% | |
| CTAGATGATGAGGATTATTA+TGG | - | chr3.4:38131077-38131096 | MS.gene22269:intron | 30.0% | |
| GGATTCAAAAGTTTATGACA+GGG | - | chr3.4:38131249-38131268 | MS.gene22269:CDS | 30.0% | |
| TATAGCTGAATTCCTTGTAA+AGG | - | chr3.4:38130390-38130409 | MS.gene22269:intron | 30.0% | |
| TATTCGAGATTACATGTTTG+AGG | - | chr3.4:38130929-38130948 | MS.gene22269:intron | 30.0% | |
| TCATTAACCAGATATAGATC+AGG | + | chr3.4:38130485-38130504 | None:intergenic | 30.0% | |
| TCTGATAAAATTGGTGTGAT+AGG | - | chr3.4:38129980-38129999 | MS.gene22269:CDS | 30.0% | |
| TGAACTGTGAACATAATTGA+AGG | + | chr3.4:38130688-38130707 | None:intergenic | 30.0% | |
| ! | CTAATTATTCAGAGTACTCT+TGG | + | chr3.4:38130607-38130626 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3.4:38129763-38129782 | MS.gene22269:intron | 30.0% |
| !! | GTTTTGATGTGATATATGTC+AGG | - | chr3.4:38129407-38129426 | MS.gene22269:intron | 30.0% |
| !!! | CAACCACTTTTTCTGAATTA+AGG | + | chr3.4:38130870-38130889 | None:intergenic | 30.0% |
| AAAAGTTTATGACAGGGAGA+CGG | - | chr3.4:38131255-38131274 | MS.gene22269:CDS | 35.0% | |
| AATTTATGGTTGGGGCATAT+AGG | - | chr3.4:38129481-38129500 | MS.gene22269:intron | 35.0% | |
| CAAGAAACTGCTCTTGTTAA+AGG | - | chr3.4:38128963-38128982 | MS.gene22269:CDS | 35.0% | |
| CATGTTGGATTTGGAAAACA+TGG | - | chr3.4:38128903-38128922 | MS.gene22269:CDS | 35.0% | |
| GAGAATCATCATGTTGGATT+TGG | - | chr3.4:38128894-38128913 | MS.gene22269:CDS | 35.0% | |
| GATGATGAGGATTATTATGG+TGG | - | chr3.4:38131080-38131099 | MS.gene22269:intron | 35.0% | |
| GGAAATACCTGATCTATATC+TGG | - | chr3.4:38130475-38130494 | MS.gene22269:intron | 35.0% | |
| GTGGCTATAGGATTTCATTA+TGG | - | chr3.4:38130421-38130440 | MS.gene22269:intron | 35.0% | |
| TAATGAATTGGAGACAGACA+TGG | - | chr3.4:38129743-38129762 | MS.gene22269:intron | 35.0% | |
| TGCATGTTACACTACACAAA+AGG | + | chr3.4:38130153-38130172 | None:intergenic | 35.0% | |
| TGTAACATGCATCCTTCATT+GGG | - | chr3.4:38130162-38130181 | MS.gene22269:intron | 35.0% | |
| ! | AAAGTGTTTGCCTACTACTT+CGG | - | chr3.4:38130952-38130971 | MS.gene22269:intron | 35.0% |
| ! | CATTATGGATACATGATGGA+TGG | - | chr3.4:38130436-38130455 | MS.gene22269:intron | 35.0% |
| ! | TTCAGGGCATCTGATAAAAT+TGG | - | chr3.4:38129971-38129990 | MS.gene22269:CDS | 35.0% |
| !! | AGTTGACCTGGTTTGTATTT+TGG | - | chr3.4:38129540-38129559 | MS.gene22269:intron | 35.0% |
| AAAGTTTATGACAGGGAGAC+GGG | - | chr3.4:38131256-38131275 | MS.gene22269:CDS | 40.0% | |
| AAGTGTTTGCCTACTACTTC+GGG | - | chr3.4:38130953-38130972 | MS.gene22269:intron | 40.0% | |
| ACACGCTCTTCAACAGTTAA+AGG | + | chr3.4:38130993-38131012 | None:intergenic | 40.0% | |
| CAAATGGATGTTTGCACTGA+GGG | + | chr3.4:38130213-38130232 | None:intergenic | 40.0% | |
| CCTCACTATCACATTTCAGA+CGG | - | chr3.4:38129641-38129660 | MS.gene22269:intron | 40.0% | |
| GAAAAGAGAAGCTGCTGATA+AGG | - | chr3.4:38131292-38131311 | MS.gene22269:CDS | 40.0% | |
| GAAGAGGAGAATCATCATGT+TGG | - | chr3.4:38128888-38128907 | MS.gene22269:CDS | 40.0% | |
| GCAGAACCAAAATACAAACC+AGG | + | chr3.4:38129549-38129568 | None:intergenic | 40.0% | |
| GGAATCAAAGGCAGAATATC+CGG | + | chr3.4:38129912-38129931 | None:intergenic | 40.0% | |
| GGGCATATAGGTCATGATAA+GGG | - | chr3.4:38129493-38129512 | MS.gene22269:intron | 40.0% | |
| GTGTAACATGCATCCTTCAT+TGG | - | chr3.4:38130161-38130180 | MS.gene22269:intron | 40.0% | |
| GTTGGATTTGGAAAACATGG+TGG | - | chr3.4:38128906-38128925 | MS.gene22269:CDS | 40.0% | |
| TCAAATGGATGTTTGCACTG+AGG | + | chr3.4:38130214-38130233 | None:intergenic | 40.0% | |
| TCAGACGGAATTTGCATGAT+TGG | - | chr3.4:38129656-38129675 | MS.gene22269:intron | 40.0% | |
| TGAACGGTTAGGAACTCAAA+TGG | + | chr3.4:38130229-38130248 | None:intergenic | 40.0% | |
| TGACGATGATCTAGATGATG+AGG | - | chr3.4:38131067-38131086 | MS.gene22269:intron | 40.0% | |
| ! | TTTAACTGTTGAAGAGCGTG+TGG | - | chr3.4:38130992-38131011 | MS.gene22269:intron | 40.0% |
| !! | ATGACTCTATCAAGTTGACC+TGG | - | chr3.4:38129528-38129547 | MS.gene22269:intron | 40.0% |
| ATGGTGGTTCAGCTAGTGTA+CGG | - | chr3.4:38131096-38131115 | MS.gene22269:intron | 45.0% | |
| CTTATCCCACTAAGTGGTGT+CGG | + | chr3.4:38129808-38129827 | None:intergenic | 45.0% | |
| GGGGCATATAGGTCATGATA+AGG | - | chr3.4:38129492-38129511 | MS.gene22269:intron | 45.0% | |
| TCCATCAAGTGTGCGATGAA+CGG | + | chr3.4:38130245-38130264 | None:intergenic | 45.0% | |
| TGAAAATGGGAGCGAAGAAG+AGG | - | chr3.4:38128872-38128891 | MS.gene22269:CDS | 45.0% | |
| TTCATCGCACACTTGATGGA+AGG | - | chr3.4:38130245-38130264 | MS.gene22269:intron | 45.0% | |
| ! | AGCAAAGCATCAGCAGCATT+TGG | - | chr3.4:38131322-38131341 | MS.gene22269:CDS | 45.0% |
| ! | ATTCAGAGTACTCTTGGGAG+TGG | + | chr3.4:38130601-38130620 | None:intergenic | 45.0% |
| ! | CCGTCTGAAATGTGATAGTG+AGG | + | chr3.4:38129644-38129663 | None:intergenic | 45.0% |
| !! | ACAACGGTTTTGTAAGGGCT+GGG | - | chr3.4:38131141-38131160 | MS.gene22269:intron | 45.0% |
| !! | GGGAGACAACGGTTTTGTAA+GGG | - | chr3.4:38131136-38131155 | MS.gene22269:intron | 45.0% |
| AACCGTAGATGGGGAGACAA+CGG | - | chr3.4:38131125-38131144 | MS.gene22269:intron | 50.0% | |
| AACCGTTGTCTCCCCATCTA+CGG | + | chr3.4:38131130-38131149 | None:intergenic | 50.0% | |
| AAGGTTGCGAGCATGCTTAC+TGG | - | chr3.4:38128982-38129001 | MS.gene22269:CDS | 50.0% | |
| AAGGTTGTCACCGTGGCTAT+AGG | - | chr3.4:38130409-38130428 | MS.gene22269:intron | 50.0% | |
| ACCATTGAGCCCGAAGTAGT+AGG | + | chr3.4:38130965-38130984 | None:intergenic | 50.0% | |
| ACCGTTCATCGCACACTTGA+TGG | - | chr3.4:38130241-38130260 | MS.gene22269:intron | 50.0% | |
| AGCATCAGCAGCATTTGGCT+AGG | - | chr3.4:38131327-38131346 | MS.gene22269:CDS | 50.0% | |
| ATGTAGCCGACACCACTTAG+TGG | - | chr3.4:38129799-38129818 | MS.gene22269:intron | 50.0% | |
| CAAGTGTGCGATGAACGGTT+AGG | + | chr3.4:38130240-38130259 | None:intergenic | 50.0% | |
| CAGCAGCATTTGGCTAGGTT+TGG | - | chr3.4:38131332-38131351 | MS.gene22269:CDS | 50.0% | |
| CCACGGTGACAACCTTTACA+AGG | + | chr3.4:38130405-38130424 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr3.4:38129811-38129830 | MS.gene22269:intron | 50.0% | |
| CCTTGTAAAGGTTGTCACCG+TGG | - | chr3.4:38130402-38130421 | MS.gene22269:intron | 50.0% | |
| CGACACCACTTAGTGGGATA+AGG | - | chr3.4:38129806-38129825 | MS.gene22269:intron | 50.0% | |
| GACTGTATGTCGCCCAATGA+AGG | + | chr3.4:38130177-38130196 | None:intergenic | 50.0% | |
| GCGCGAGCCAAAAAAGAAAG+AGG | - | chr3.4:38131228-38131247 | MS.gene22269:intron | 50.0% | |
| GGTTCAGCTAGTGTACGGAT+TGG | - | chr3.4:38131101-38131120 | MS.gene22269:intron | 50.0% | |
| TGTAGCCGACACCACTTAGT+GGG | - | chr3.4:38129800-38129819 | MS.gene22269:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr3.4:38129814-38129833 | None:intergenic | 50.0% |
| ! | TTGAGCTTGCTCCTGAATCC+TGG | + | chr3.4:38131201-38131220 | None:intergenic | 50.0% |
| !! | ACGGATTGGCAACCGTAGAT+GGG | - | chr3.4:38131115-38131134 | MS.gene22269:intron | 50.0% |
| !! | GACAACGGTTTTGTAAGGGC+TGG | - | chr3.4:38131140-38131159 | MS.gene22269:intron | 50.0% |
| !! | GGGGAGACAACGGTTTTGTA+AGG | - | chr3.4:38131135-38131154 | MS.gene22269:intron | 50.0% |
| !! | TACGGATTGGCAACCGTAGA+TGG | - | chr3.4:38131114-38131133 | MS.gene22269:intron | 50.0% |
| CGACCAAGCTTCCAGGATTC+AGG | - | chr3.4:38131187-38131206 | MS.gene22269:intron | 55.0% | |
| CTGGAAGCTTGGTCGATGAC+CGG | + | chr3.4:38131182-38131201 | None:intergenic | 55.0% | |
| GCCTACTACTTCGGGCTCAA+TGG | - | chr3.4:38130961-38130980 | MS.gene22269:intron | 55.0% | |
| GCTCCTGAATCCTGGAAGCT+TGG | + | chr3.4:38131193-38131212 | None:intergenic | 55.0% | |
| TGGATGTTTGCACTGAGGGC+AGG | + | chr3.4:38130209-38130228 | None:intergenic | 55.0% | |
| !! | CGGATTGGCAACCGTAGATG+GGG | - | chr3.4:38131116-38131135 | MS.gene22269:intron | 55.0% |
| CGGTCATCGACCAAGCTTCC+AGG | - | chr3.4:38131180-38131199 | MS.gene22269:intron | 60.0% | |
| GACAGGGAGACGGGCAAAGA+GGG | - | chr3.4:38131265-38131284 | MS.gene22269:CDS | 60.0% | |
| TGACAGGGAGACGGGCAAAG+AGG | - | chr3.4:38131264-38131283 | MS.gene22269:CDS | 60.0% | |
| GGGCTGGGCGTCAAGAAGCT+CGG | - | chr3.4:38131156-38131175 | MS.gene22269:intron | 65.0% | |
| TGGGCGTCAAGAAGCTCGGC+CGG | - | chr3.4:38131160-38131179 | MS.gene22269:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 38128870 | 38131364 | 38128870 | ID=MS.gene22269 |
| chr3.4 | mRNA | 38128870 | 38131364 | 38128870 | ID=MS.gene22269.t1;Parent=MS.gene22269 |
| chr3.4 | exon | 38131231 | 38131364 | 38131231 | ID=MS.gene22269.t1.exon1;Parent=MS.gene22269.t1 |
| chr3.4 | CDS | 38131231 | 38131364 | 38131231 | ID=cds.MS.gene22269.t1;Parent=MS.gene22269.t1 |
| chr3.4 | exon | 38129968 | 38130072 | 38129968 | ID=MS.gene22269.t1.exon2;Parent=MS.gene22269.t1 |
| chr3.4 | CDS | 38129968 | 38130072 | 38129968 | ID=cds.MS.gene22269.t1;Parent=MS.gene22269.t1 |
| chr3.4 | exon | 38128870 | 38129305 | 38128870 | ID=MS.gene22269.t1.exon3;Parent=MS.gene22269.t1 |
| chr3.4 | CDS | 38128870 | 38129305 | 38128870 | ID=cds.MS.gene22269.t1;Parent=MS.gene22269.t1 |
| Gene Sequence |
| Protein sequence |
