AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056986


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056986.t1 MTR_2g099500 99.600 250 1 0 1 250 1 250 0.0 514
MS.gene056986.t1 MTR_8g019520 80.081 246 48 1 6 250 10 255 1.42e-123 352
MS.gene056986.t1 MTR_8g019520 79.757 247 48 2 6 250 10 256 5.34e-122 348
MS.gene056986.t1 MTR_2g040990 72.177 248 58 5 6 250 13 252 1.43e-113 326
MS.gene056986.t1 MTR_4g134510 67.857 252 76 1 1 247 1 252 1.74e-111 321
MS.gene056986.t1 MTR_1g015185 68.775 253 70 3 6 250 11 262 2.56e-108 313
MS.gene056986.t1 MTR_4g015830 62.000 250 82 6 1 250 3 239 4.15e-92 271
MS.gene056986.t1 MTR_7g068590 58.607 244 91 4 1 244 3 236 2.92e-86 256
MS.gene056986.t1 MTR_1g015185 79.286 140 29 0 6 145 11 150 1.13e-70 216
MS.gene056986.t1 MTR_8g066480 51.471 136 46 5 116 250 29 145 2.23e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056986.t1 AT3G42790 72.653 245 61 3 6 250 11 249 2.36e-118 338
MS.gene056986.t1 AT5G20510 69.200 250 71 2 6 250 11 259 1.32e-113 327
MS.gene056986.t1 AT1G14510 67.755 245 76 3 6 250 10 251 6.90e-106 306
MS.gene056986.t1 AT2G02470 68.340 259 69 6 1 250 1 255 6.53e-105 304
MS.gene056986.t1 AT2G02470 68.504 254 68 6 1 250 1 246 4.64e-103 299
MS.gene056986.t1 AT5G26210 70.732 246 70 2 6 250 10 254 1.91e-93 275
MS.gene056986.t1 AT5G20510 68.519 216 62 2 40 250 4 218 5.08e-92 270
MS.gene056986.t1 AT5G05610 60.331 242 84 5 6 247 9 238 3.48e-88 261
MS.gene056986.t1 AT5G05610 60.331 242 84 5 6 247 9 238 3.48e-88 261
MS.gene056986.t1 AT3G11200 61.570 242 84 5 6 247 11 243 9.41e-86 255
MS.gene056986.t1 AT5G20510 74.194 155 40 0 6 160 11 165 9.82e-76 228
MS.gene056986.t1 AT3G11200 61.538 208 71 5 40 247 32 230 4.66e-72 220
MS.gene056986.t1 AT2G02470 72.785 158 38 2 1 154 1 157 1.00e-66 207

Find 59 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 2.1:+5090545 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 2.1:+5090584 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 2.1:-5092666 MS.gene056986:CDS
ACGGATTGCTTAATGAGAAT+TGG 0.301755 2.1:-5092833 MS.gene056986:CDS
AAGGAGAATTTGTGCTTATA+CGG 0.310260 2.1:-5092852 MS.gene056986:CDS
AACAGGGCGAAGCCACTTGC+GGG 0.339120 2.1:-5090502 MS.gene056986:CDS
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 2.1:+5090563 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 2.1:-5090466 MS.gene056986:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 2.1:-5092761 MS.gene056986:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 2.1:+5093665 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 2.1:+5093641 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 2.1:+5091840 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 2.1:-5090481 MS.gene056986:CDS
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 2.1:-5092778 MS.gene056986:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 2.1:-5093676 MS.gene056986:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 2.1:-5091928 MS.gene056986:CDS
CTTTCCCTTGCATTCTACTT+TGG 0.386606 2.1:-5092678 MS.gene056986:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 2.1:-5092832 MS.gene056986:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 2.1:+5092743 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 2.1:-5090519 MS.gene056986:CDS
AGCTTTATCAAATCCAAATC+TGG 0.410286 2.1:+5092653 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 2.1:+5092780 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 2.1:-5090543 MS.gene056986:CDS
TCTTGTTACTGCTGCATGAT+GGG 0.433135 2.1:+5090354 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 2.1:+5092798 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 2.1:+5093642 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 2.1:-5090534 MS.gene056986:CDS
CTCTTGTTACTGCTGCATGA+TGG 0.480424 2.1:+5090353 None:intergenic
TTCTACAGACAATGTGATCC+TGG 0.488698 2.1:-5093455 MS.gene056986:intron
TTGATACCCAGCACAGGCTC+AGG 0.497706 2.1:+5092771 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 2.1:+5092710 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 2.1:-5092704 MS.gene056986:CDS
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 2.1:-5090431 MS.gene056986:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 2.1:-5092756 MS.gene056986:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 2.1:-5092777 MS.gene056986:CDS
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 2.1:-5092737 MS.gene056986:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 2.1:-5090494 MS.gene056986:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 2.1:+5090389 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 2.1:-5093730 None:intergenic
TTGGATTTGATAAAGCTGAC+AGG 0.552742 2.1:-5092647 MS.gene056986:intron
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 2.1:-5090482 MS.gene056986:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 2.1:+5091931 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 2.1:-5090439 MS.gene056986:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 2.1:-5090503 MS.gene056986:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 2.1:+5092673 None:intergenic
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 2.1:-5091848 MS.gene056986:intron
ATCACCACAAGCCCCGCAAG+TGG 0.598002 2.1:+5090490 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 2.1:-5090576 MS.gene056986:CDS
GCTGGGTATCAACTTTGCCA+GGG 0.620748 2.1:-5092760 MS.gene056986:CDS
GCAAAGTTGATACCCAGCAC+AGG 0.629760 2.1:+5092765 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 2.1:-5093652 MS.gene056986:intron
GGCATTACAGCCAAAAGATG+AGG 0.636479 2.1:-5090555 MS.gene056986:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 2.1:+5092674 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 2.1:-5090501 MS.gene056986:CDS
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 2.1:+5092783 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 2.1:-5090552 MS.gene056986:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 2.1:-5090518 MS.gene056986:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 2.1:-5090480 MS.gene056986:CDS
TCTTCAGTCTCAAACAACAG+TGG 0.724521 2.1:-5091877 MS.gene056986:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAAAATGATATTATT+AGG + chr2.1:5093066-5093085 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG + chr2.1:5091148-5091167 None:intergenic 10.0%
!!! AATAAATACAACTATTTTAA+GGG + chr2.1:5091147-5091166 None:intergenic 10.0%
!! AAATAAATAAGTTAACAATG+TGG - chr2.1:5092726-5092745 MS.gene056986:CDS 15.0%
!! ATTTGTGAATAAAAAAGTAA+AGG - chr2.1:5092598-5092617 MS.gene056986:intron 15.0%
!! GTATATAAACATAACTTATT+TGG + chr2.1:5093334-5093353 None:intergenic 15.0%
!! TAAATAAAATTCAAAAACCT+TGG + chr2.1:5090529-5090548 None:intergenic 15.0%
!!! AAATGCCTTAATTTTAAAAA+AGG + chr2.1:5092546-5092565 None:intergenic 15.0%
!!! AATGCCTTAATTTTAAAAAA+GGG + chr2.1:5092545-5092564 None:intergenic 15.0%
!!! TTCAATCTTTTTCAAAATTT+TGG - chr2.1:5090441-5090460 MS.gene056986:CDS 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG - chr2.1:5093081-5093100 MS.gene056986:intron 15.0%
!!! TTTATTTTCCATCAATTTTA+GGG - chr2.1:5090697-5090716 MS.gene056986:intron 15.0%
!!! TTTTATTTTCCATCAATTTT+AGG - chr2.1:5090696-5090715 MS.gene056986:intron 15.0%
!! AAGAAAAATCTTATTCAACA+AGG + chr2.1:5091585-5091604 None:intergenic 20.0%
!! AAGTATACATATCATTAACA+GGG + chr2.1:5093168-5093187 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG + chr2.1:5091584-5091603 None:intergenic 20.0%
!! AGATAAAAATAGTTATGCTT+CGG + chr2.1:5091447-5091466 None:intergenic 20.0%
!! TATCTAATTGATATCTTGTT+TGG - chr2.1:5093386-5093405 MS.gene056986:intron 20.0%
!! TCTATTGTTTATCCTATAAT+GGG - chr2.1:5092437-5092456 MS.gene056986:intron 20.0%
!! TGATAATTCATTGTTCTTTA+TGG - chr2.1:5090781-5090800 MS.gene056986:intron 20.0%
!! TTAACAATTAGATAAGAACA+CGG + chr2.1:5093436-5093455 None:intergenic 20.0%
!!! AAATTAAGGCATTTTTCAAA+TGG - chr2.1:5092552-5092571 MS.gene056986:intron 20.0%
!!! ATAAAAGAGCATTCAAATAT+CGG + chr2.1:5090682-5090701 None:intergenic 20.0%
!!! ATCATCAAAAATTTGTTCAA+CGG + chr2.1:5090365-5090384 None:intergenic 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG - chr2.1:5093387-5093406 MS.gene056986:intron 20.0%
!!! CGCTATTATTATTTTAAACA+GGG + chr2.1:5092357-5092376 None:intergenic 20.0%
!!! GAATCCCTTTTTTAAAATTA+AGG - chr2.1:5092538-5092557 MS.gene056986:intron 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG + chr2.1:5092358-5092377 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG - chr2.1:5093082-5093101 MS.gene056986:intron 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG - chr2.1:5090509-5090528 MS.gene056986:CDS 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG - chr2.1:5090449-5090468 MS.gene056986:CDS 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG - chr2.1:5090448-5090467 MS.gene056986:CDS 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG + chr2.1:5092703-5092722 None:intergenic 20.0%
! AAACATAACTTATTTGGAAG+TGG + chr2.1:5093328-5093347 None:intergenic 25.0%
! ACATTGAAATTAAACTAACC+AGG + chr2.1:5090624-5090643 None:intergenic 25.0%
! ATTGACTGATAAATAAAAGG+CGG + chr2.1:5090849-5090868 None:intergenic 25.0%
! CAAGTATACATATCATTAAC+AGG + chr2.1:5093169-5093188 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG - chr2.1:5093167-5093186 MS.gene056986:intron 25.0%
! GAATTTGGACTGAATATTTA+TGG - chr2.1:5092981-5093000 MS.gene056986:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG + chr2.1:5091446-5091465 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG + chr2.1:5091658-5091677 None:intergenic 25.0%
! GTCTATTGTTTATCCTATAA+TGG - chr2.1:5092436-5092455 MS.gene056986:intron 25.0%
! GTGAAGTATGATGAATATAT+TGG - chr2.1:5092917-5092936 MS.gene056986:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG + chr2.1:5091948-5091967 None:intergenic 25.0%
! TAATGATATGTATACTTGGT+TGG - chr2.1:5093171-5093190 MS.gene056986:intron 25.0%
! TAATTGAACCCTAAAATTGA+TGG + chr2.1:5090708-5090727 None:intergenic 25.0%
! TATCTCTCATCATTATTAAG+CGG + chr2.1:5093279-5093298 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG - chr2.1:5090547-5090566 MS.gene056986:CDS 25.0%
! TTGCTTATAAATCATTGTTG+AGG - chr2.1:5091674-5091693 MS.gene056986:intron 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG - chr2.1:5092784-5092803 MS.gene056986:CDS 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG - chr2.1:5092616-5092635 MS.gene056986:intron 25.0%
!! AATCATCTGTGTATTTGTTT+TGG - chr2.1:5092002-5092021 MS.gene056986:intron 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG + chr2.1:5092657-5092676 None:intergenic 25.0%
!!! AATAATTTGCTTATCCAAAC+AGG - chr2.1:5091121-5091140 MS.gene056986:intron 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG - chr2.1:5091743-5091762 MS.gene056986:intron 25.0%
!!! CTTTTATTTATCAGTCAATG+CGG - chr2.1:5090850-5090869 MS.gene056986:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG + chr2.1:5091047-5091066 None:intergenic 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG - chr2.1:5091744-5091763 MS.gene056986:intron 25.0%
AAGGAGAATTTGTGCTTATA+CGG - chr2.1:5091206-5091225 MS.gene056986:intron 30.0%
AAGGTATGCAGAAATAAAAG+AGG - chr2.1:5093028-5093047 MS.gene056986:intron 30.0%
AATTGAAGATTCCTATCAAG+TGG - chr2.1:5091934-5091953 MS.gene056986:CDS 30.0%
ACTCGTGAAAAAGTTATATC+AGG - chr2.1:5091474-5091493 MS.gene056986:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG - chr2.1:5093352-5093371 MS.gene056986:intron 30.0%
AGGGTTCAATTATTTGCAAT+TGG - chr2.1:5090716-5090735 MS.gene056986:intron 30.0%
AGTTTCCACTAACTATGATA+TGG - chr2.1:5093251-5093270 MS.gene056986:intron 30.0%
ATATCAGGATGAGTATGTTA+AGG - chr2.1:5091489-5091508 MS.gene056986:intron 30.0%
CAAAATTTGTAGATCAAGCA+AGG + chr2.1:5090485-5090504 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG - chr2.1:5091187-5091206 MS.gene056986:intron 30.0%
GTTACAACTTCAAATACTGT+TGG + chr2.1:5092130-5092149 None:intergenic 30.0%
TAAGAACTTTACCTTAAGCT+TGG - chr2.1:5092850-5092869 MS.gene056986:CDS 30.0%
TAGACTCCGATTAATAAAGA+AGG + chr2.1:5092793-5092812 None:intergenic 30.0%
TATACATATCATTAACAGGG+TGG + chr2.1:5093165-5093184 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG - chr2.1:5093177-5093196 MS.gene056986:intron 30.0%
TGAACAAGAAATTATACCGA+CGG + chr2.1:5090425-5090444 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG - chr2.1:5092513-5092532 MS.gene056986:intron 30.0%
TTGTCGCATTTCTATGATTT+AGG - chr2.1:5090895-5090914 MS.gene056986:intron 30.0%
! AATCGGAGTCTAAAATACTT+TGG - chr2.1:5092801-5092820 MS.gene056986:CDS 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG - chr2.1:5092130-5092149 MS.gene056986:intron 30.0%
! AGCTTTATCAAATCCAAATC+TGG + chr2.1:5091408-5091427 None:intergenic 30.0%
! CTTGCTTGATCTACAAATTT+TGG - chr2.1:5090483-5090502 MS.gene056986:CDS 30.0%
! TGCGACAAATTTTGCATTAT+AGG + chr2.1:5090883-5090902 None:intergenic 30.0%
! TGTACTTGTATGATGGAATT+TGG - chr2.1:5092966-5092985 MS.gene056986:intron 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG - chr2.1:5092631-5092650 MS.gene056986:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr2.1:5090956-5090975 MS.gene056986:intron 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG + chr2.1:5092221-5092240 None:intergenic 30.0%
!! CGCATTGACTGATAAATAAA+AGG + chr2.1:5090852-5090871 None:intergenic 30.0%
!! GCTTACATAAGCTATTTCTA+AGG + chr2.1:5091054-5091073 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr2.1:5090957-5090976 MS.gene056986:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG - chr2.1:5092820-5092839 MS.gene056986:CDS 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG - chr2.1:5091745-5091764 MS.gene056986:intron 30.0%
!!! TGTTTTAAGATAGTGCAAGA+AGG - chr2.1:5091879-5091898 MS.gene056986:CDS 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG - chr2.1:5092819-5092838 MS.gene056986:CDS 30.0%
AAGAAATTATACCGACGGTT+AGG + chr2.1:5090420-5090439 None:intergenic 35.0%
AATGGCAAATTAGGACAAGA+AGG + chr2.1:5092066-5092085 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG + chr2.1:5090419-5090438 None:intergenic 35.0%
AGTATGTTAAGGCAGTAGTT+TGG - chr2.1:5091500-5091519 MS.gene056986:intron 35.0%
AGTTAGTGGAAACTTGTGAA+GGG + chr2.1:5093245-5093264 None:intergenic 35.0%
ATAGTGCAAGAAGGAAAAGT+TGG - chr2.1:5091888-5091907 MS.gene056986:CDS 35.0%
CAATGCATGAAAGATAACCA+TGG + chr2.1:5092417-5092436 None:intergenic 35.0%
CGGATTGCTTAATGAGAATT+GGG - chr2.1:5091226-5091245 MS.gene056986:intron 35.0%
GCTAGAAAGCAGTTATAAAG+TGG + chr2.1:5091630-5091649 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG - chr2.1:5090932-5090951 MS.gene056986:intron 35.0%
GTCTACACTTGAAAAACCAT+AGG + chr2.1:5092506-5092525 None:intergenic 35.0%
TAGTTAGTGGAAACTTGTGA+AGG + chr2.1:5093246-5093265 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr2.1:5090922-5090941 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG - chr2.1:5093356-5093375 MS.gene056986:intron 35.0%
TGAATCGCAGTGTAAAACTT+AGG - chr2.1:5092296-5092315 MS.gene056986:intron 35.0%
TGCAATAAACAACAAGGTCT+TGG + chr2.1:5092697-5092716 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG + chr2.1:5092075-5092094 None:intergenic 35.0%
TTCAAGTGTAGACTGTTCAT+AGG - chr2.1:5092325-5092344 MS.gene056986:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG + chr2.1:5092864-5092883 None:intergenic 35.0%
TTGGATTTGATAAAGCTGAC+AGG - chr2.1:5091411-5091430 MS.gene056986:intron 35.0%
TTGTTTAGTCATCGTTGTGT+TGG - chr2.1:5091546-5091565 MS.gene056986:intron 35.0%
! ACGGATTGCTTAATGAGAAT+TGG - chr2.1:5091225-5091244 MS.gene056986:intron 35.0%
! CAAGCTTTGTACTTGTATGA+TGG - chr2.1:5092959-5092978 MS.gene056986:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG - chr2.1:5093009-5093028 MS.gene056986:intron 35.0%
! CTTTGATGATTCCAGTTCTT+CGG + chr2.1:5090396-5090415 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG - chr2.1:5092074-5092093 MS.gene056986:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG - chr2.1:5090905-5090924 MS.gene056986:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG + chr2.1:5093647-5093666 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG - chr2.1:5092821-5092840 MS.gene056986:CDS 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG + chr2.1:5091138-5091157 None:intergenic 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG - chr2.1:5092210-5092229 MS.gene056986:intron 35.0%
!! CTTGTAGCTTTGAATTCTGA+TGG - chr2.1:5090809-5090828 MS.gene056986:intron 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG - chr2.1:5093094-5093113 MS.gene056986:intron 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG + chr2.1:5091749-5091768 None:intergenic 35.0%
AAAAGATGAGGAGGAAGAAC+TGG - chr2.1:5093515-5093534 MS.gene056986:intron 40.0%
AAACAACAAGGTCTTGGATG+AGG + chr2.1:5092691-5092710 None:intergenic 40.0%
ATCACTGTGAACAGCAACTA+AGG + chr2.1:5091351-5091370 None:intergenic 40.0%
ATGGAATGCAAGAGAAAGAC+TGG - chr2.1:5091321-5091340 MS.gene056986:intron 40.0%
ATTACAGCCAAAAGATGAGG+AGG - chr2.1:5093506-5093525 MS.gene056986:intron 40.0%
CACAGACTAAACAATCTGCA+TGG + chr2.1:5092469-5092488 None:intergenic 40.0%
CATGGACAAAAGACAACACA+TGG + chr2.1:5092399-5092418 None:intergenic 40.0%
CTTTCCCTTGCATTCTACTT+TGG - chr2.1:5091380-5091399 MS.gene056986:intron 40.0%
TCTTCAGTCTCAAACAACAG+TGG - chr2.1:5092181-5092200 MS.gene056986:intron 40.0%
TCTTGTTACTGCTGCATGAT+GGG + chr2.1:5093707-5093726 None:intergenic 40.0%
TGATGTGACTAAGAGGTCAT+AGG + chr2.1:5091814-5091833 None:intergenic 40.0%
TGTTCTCATCTATCTGCCTA+TGG - chr2.1:5092487-5092506 MS.gene056986:intron 40.0%
TTCTACAGACAATGTGATCC+TGG - chr2.1:5090603-5090622 MS.gene056986:intron 40.0%
! AGCCACAATTGATGCTCTTT+TGG - chr2.1:5091970-5091989 MS.gene056986:intron 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG + chr2.1:5093516-5093535 None:intergenic 40.0%
! CATGTGTTGTCTTTTGTCCA+TGG - chr2.1:5092397-5092416 MS.gene056986:intron 40.0%
! GATTTAGGACCTGTTTGGAT+TGG - chr2.1:5090910-5090929 MS.gene056986:intron 40.0%
! GCACAAGTTTTCAACATGAG+AGG - chr2.1:5093300-5093319 MS.gene056986:intron 40.0%
! TTGCTGTTCACAGTGATACA+TGG - chr2.1:5091354-5091373 MS.gene056986:intron 40.0%
!! GACCAAAAGAGCATCAATTG+TGG + chr2.1:5091975-5091994 None:intergenic 40.0%
!! GTAGCTTTGAATTCTGATGG+AGG - chr2.1:5090812-5090831 MS.gene056986:intron 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG - chr2.1:5091392-5091411 MS.gene056986:intron 40.0%
ATCATCAAAGCCCTAACCGT+CGG - chr2.1:5090406-5090425 MS.gene056986:CDS 45.0%
CAACACATGGAGAGTTTGTC+AGG + chr2.1:5092386-5092405 None:intergenic 45.0%
CATGGCAGCATTTCTATAGC+AGG - chr2.1:5091836-5091855 MS.gene056986:intron 45.0%
CCATGTGTGATGTGACTAAG+AGG + chr2.1:5091821-5091840 None:intergenic 45.0%
CCTCTTAGTCACATCACACA+TGG - chr2.1:5091818-5091837 MS.gene056986:intron 45.0%
CCTCTTGCAGATGCAAAGTA+AGG + chr2.1:5091773-5091792 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG - chr2.1:5091770-5091789 MS.gene056986:intron 45.0%
CTCTTGTTACTGCTGCATGA+TGG + chr2.1:5093708-5093727 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG + chr2.1:5092775-5092794 None:intergenic 45.0%
GACGTTTCCTGCATCACAAA+TGG + chr2.1:5092084-5092103 None:intergenic 45.0%
GATTTCAAGAGCCGAAGAAC+TGG - chr2.1:5090382-5090401 MS.gene056986:CDS 45.0%
GGCATTACAGCCAAAAGATG+AGG - chr2.1:5093503-5093522 MS.gene056986:intron 45.0%
GGCTCCAAAGTAGAATGCAA+GGG + chr2.1:5091387-5091406 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG - chr2.1:5091690-5091709 MS.gene056986:intron 45.0%
TCAGAGCAGACAACCAAAAG+CGG - chr2.1:5093482-5093501 MS.gene056986:intron 45.0%
TCTGGAGGAACTTCTTCAAC+AGG + chr2.1:5091263-5091282 None:intergenic 45.0%
TGGAAACTTGTGAAGGGAGA+TGG + chr2.1:5093239-5093258 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG + chr2.1:5091388-5091407 None:intergenic 45.0%
TTTCTCTTGCATTCCATCCC+TGG + chr2.1:5091318-5091337 None:intergenic 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG + chr2.1:5091758-5091777 None:intergenic 45.0%
! AGAGCAGGATGATGATGAAC+AGG - chr2.1:5093539-5093558 MS.gene056986:intron 45.0%
! GAGCAGGATGATGATGAACA+GGG - chr2.1:5093540-5093559 MS.gene056986:intron 45.0%
!! CGGTGCCATATCATAGTTAG+TGG + chr2.1:5093259-5093278 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG + chr2.1:5092452-5092471 None:intergenic 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG + chr2.1:5093498-5093517 None:intergenic 45.0%
ATCTGCGAGAAGTGGTTCCA+TGG - chr2.1:5093627-5093646 MS.gene056986:intron 50.0%
GCAGTATTCCAACACGGAGA+CGG - chr2.1:5091696-5091715 MS.gene056986:intron 50.0%
GCTGGGTATCAACTTTGCCA+GGG - chr2.1:5091298-5091317 MS.gene056986:intron 50.0%
GGCTTGTGGTGATAGTAACG+GGG - chr2.1:5093578-5093597 MS.gene056986:intron 50.0%
GGGCTTGTGGTGATAGTAAC+GGG - chr2.1:5093577-5093596 MS.gene056986:intron 50.0%
GGGGCTTGTGGTGATAGTAA+CGG - chr2.1:5093576-5093595 MS.gene056986:intron 50.0%
GGTATCAACTTTGCCAGGGA+TGG - chr2.1:5091302-5091321 MS.gene056986:intron 50.0%
TGCTGGGTATCAACTTTGCC+AGG - chr2.1:5091297-5091316 MS.gene056986:intron 50.0%
TTCAACATCCGTCTCCGTGT+TGG + chr2.1:5091707-5091726 None:intergenic 50.0%
TTGATATGCTCAGCACGAGC+AGG + chr2.1:5093672-5093691 None:intergenic 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG + chr2.1:5091296-5091315 None:intergenic 50.0%
ACAGGCTCAGGAATCTCTGG+AGG + chr2.1:5091278-5091297 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG - chr2.1:5091280-5091299 MS.gene056986:intron 55.0%
AGCACAGGCTCAGGAATCTC+TGG + chr2.1:5091281-5091300 None:intergenic 55.0%
GAGATTCCTGAGCCTGTGCT+GGG - chr2.1:5091281-5091300 MS.gene056986:intron 55.0%
GAGGTCATAGGCTCAAGTCG+TGG + chr2.1:5091802-5091821 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG - chr2.1:5093524-5093543 MS.gene056986:intron 55.0%
TTGATACCCAGCACAGGCTC+AGG + chr2.1:5091290-5091309 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG + chr2.1:5093477-5093496 None:intergenic 55.0%
! GTAACGGGGCTGATGAGTTC+TGG - chr2.1:5093592-5093611 MS.gene056986:intron 55.0%
AACAGGGCGAAGCCACTTGC+GGG - chr2.1:5093556-5093575 MS.gene056986:intron 60.0%
ATCACCACAAGCCCCGCAAG+TGG + chr2.1:5093571-5093590 None:intergenic 60.0%
GAACAGGGCGAAGCCACTTG+CGG - chr2.1:5093555-5093574 MS.gene056986:intron 60.0%
GCTGCGACATCTGCGAGAAG+TGG - chr2.1:5093619-5093638 MS.gene056986:intron 60.0%
ACAGGGCGAAGCCACTTGCG+GGG - chr2.1:5093557-5093576 MS.gene056986:intron 65.0%
GAAGCCACTTGCGGGGCTTG+TGG - chr2.1:5093564-5093583 MS.gene056986:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5090343 5093737 5090343 ID=MS.gene056986
chr2.1 mRNA 5090343 5093737 5090343 ID=MS.gene056986.t1;Parent=MS.gene056986
chr2.1 exon 5093653 5093737 5093653 ID=MS.gene056986.t1.exon1;Parent=MS.gene056986.t1
chr2.1 CDS 5093653 5093737 5093653 ID=cds.MS.gene056986.t1;Parent=MS.gene056986.t1
chr2.1 exon 5093456 5093488 5093456 ID=MS.gene056986.t1.exon2;Parent=MS.gene056986.t1
chr2.1 CDS 5093456 5093488 5093456 ID=cds.MS.gene056986.t1;Parent=MS.gene056986.t1
chr2.1 exon 5092648 5092876 5092648 ID=MS.gene056986.t1.exon3;Parent=MS.gene056986.t1
chr2.1 CDS 5092648 5092876 5092648 ID=cds.MS.gene056986.t1;Parent=MS.gene056986.t1
chr2.1 exon 5091849 5091984 5091849 ID=MS.gene056986.t1.exon4;Parent=MS.gene056986.t1
chr2.1 CDS 5091849 5091984 5091849 ID=cds.MS.gene056986.t1;Parent=MS.gene056986.t1
chr2.1 exon 5090343 5090612 5090343 ID=MS.gene056986.t1.exon5;Parent=MS.gene056986.t1
chr2.1 CDS 5090343 5090612 5090343 ID=cds.MS.gene056986.t1;Parent=MS.gene056986.t1
Gene Sequence

>MS.gene056986

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGGTATAATTTCTTGTTCAATCTTTTTCAAAATTTTGGCAAAAGGGTTTTTCATTTCCTTGCTTGATCTACAAATTTTGGATTTTTCATTAAATTTTCTACCAAGGTTTTTGAATTTTATTTATTCTTGCACTAAAATGTTTGGTTTTATCGTCATGTTGTTGCAGATGTTGAAGATTTCTACAGACAATGTGATCCTGGTTAGTTTAATTTCAATGTTTTCTCTCAAAAAAATTATGAATTTCATTTTGTTGCCGATATTTGAATGCTCTTTTATTTTCCATCAATTTTAGGGTTCAATTATTTGCAATTGGTATCACTGATTTGTGTAATTTAGATGTGTTGCGTATGTTAATTGATAATTCATTGTTCTTTATGGCTTTACTTGTAGCTTTGAATTCTGATGGAGGAGATTTTTCAGCCGCCTTTTATTTATCAGTCAATGCGGCTATAAGCCTATAATGCAAAATTTGTCGCATTTCTATGATTTAGGACCTGTTTGGATTGGCTTATTTGAGCTTATCTACTGGCATAAGTTTTGTGAGACTGTTTGGGAGAAGTTTTGAAAACAGCTTATGACATCTTATAGCATATACAAAAACAATTTAACTTTATTTTACCATTTTCCTTAGAAATAGCTTATGTAAGCTTATACATAAGCGCTTATCATGATAAGTGTGTGTGCTATTAGCTGCAAATAATTTGCTTATCCAAACAGGCCCTTAAAATAGTTGTATTTATTTCATATACAAGTTTTCATATCTGTTGTATTCTTTCAGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGTATATATTACCCGAAGCATAACTATTTTTATCTGATATTAACTCGTGAAAAAGTTATATCAGGATGAGTATGTTAAGGCAGTAGTTTGGATCATACTTTTCTTATCTTACATTTGTTTAGTCATCGTTGTGTTGGATTTTCGTTACACCCTTGTTGAATAAGATTTTTCTTGTTTAGCATGAAGCAATTGTCTCCACTTTATAACTGCTTTCTAGCATCAGCCTTGATTTGCAATTTTATTTGCTTATAAATCATTGTTGAGGCAGTATTCCAACACGGAGACGGATGTTGAAGCATAGAAAAAAATGTATACCATTTTTTCCTGAAAAAGGGGAGCCTTACTTTGCATCTGCAAGAGGCTGATTCCACGACTTGAGCCTATGACCTCTTAGTCACATCACACATGGCAGCATTTCTATAGCAGGTTATCTGCTGAGTATCAACTTGTTTTAAGATAGTGCAAGAAGGAAAAGTTGGACTTGTATATTGATTATCATGTGAATTGAAGATTCCTATCAAGTGGTTTTTTCTTTAGCAGCCACAATTGATGCTCTTTTGGTCATAATGTAATCATCTGTGTATTTGTTTTGGATACTTGTTGTTAATGTCACATGCATTTTATCATGCATCCTTCTTGTCCTAATTTGCCATTTGTGATGCAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGGTAAATAATTCTTGACGAACATTCATCACAAATAGATACATCTGTTCATAAGTATTTGTCTATCTGAATCGCAGTGTAAAACTTAGGATGTTTTTCAAGTGTAGACTGTTCATAGGTAGAAACCCTGTTTAAAATAATAATAGCGATCTATCCTGACAAACTCTCCATGTGTTGTCTTTTGTCCATGGTTATCTTTCATGCATTGTCTATTGTTTATCCTATAATGGGTACTCTCCATGCAGATTGTTTAGTCTGTGTTCTCATCTATCTGCCTATGGTTTTTCAAGTGTAGACTGTATATAGGTAGAATCCCTTTTTTAAAATTAAGGCATTTTTCAAATGGTTATTATTATTTGTCTGTTAAGCATTTGTGAATAAAAAAGTAAAGGAACAACTAGTTTAATTGGTTTCTTTGAGCAAGGCCAAAATGAAACGATTCTTTAGTATAAAGTTCTTCCTCATCCAAGACCTTGTTGTTTATTGCAAAAAAAAATAAATAAATAAGTTAACAATGTGGTAAACAATCTCTTGATCTTTGAACCAGTTTACAGCTTGTCTCCTTCTTTATTAATCGGAGTCTAAAATACTTTGGTGTTTCGTTACATTTTGGGGATAATGTAAGAACTTTACCTTAAGCTTGGTTATTCTGCAATTGTTTTGACATTGCTTATACATTCAAATGAAAGTGAAGTATGATGAATATATTGGTTGCACTGATTAATTGTTGCAAGCTTTGTACTTGTATGATGGAATTTGGACTGAATATTTATGGCATAACACTTGAATTGCTACTTGTAAGGTATGCAGAAATAAAAGAGGAGAGTAGAACATCCTAATAATATCATTTTCTTTATTGTCATTTTGAATTTCGGGTTTAGAATGTGGATAAGTATAGTATCACATTATTGTTTTCGAAGCATATGATTGAAGCCACCCTGTTAATGATATGTATACTTGGTTGGAAATGGATCATCTCGTGTTGAACTTTCATAATAAAATCGCGTCCATCTCCCTTCACAAGTTTCCACTAACTATGATATGGCACCGCTTAATAATGATGAGAGATATGCACAAGTTTTCAACATGAGAGGATCCACTTCCAAATAAGTTATGTTTATATACTTTCAATGCAAAATTGTGTGGAAGGTTAAGAATATCTAATTGATATCTTGTTTGGGTTCTGTTCTAATTCTGAGATAGTCCGTGTTCTTATCTAATTGTTAACTGTTTGAGCAGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>MS.gene056986.t1

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR