Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22338.t1 | XP_003611048.1 | 89.9 | 308 | 27 | 2 | 105 | 409 | 100 | 406 | 4.10E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22338.t1 | Q9SH58 | 42.3 | 317 | 141 | 11 | 108 | 390 | 98 | 406 | 1.2e-20 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22338.t1 | G7KBZ0 | 89.9 | 308 | 27 | 2 | 105 | 409 | 100 | 406 | 2.9e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050806 | MS.gene22338 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene22338 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene22338 | 0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene22338 | 0.814882 | 1.23E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene22338 | 0.820337 | 7.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22338.t1 | MTR_5g009870 | 87.409 | 413 | 41 | 5 | 1 | 409 | 1 | 406 | 0.0 | 598 |
| MS.gene22338.t1 | MTR_8g099045 | 41.089 | 404 | 134 | 15 | 1 | 368 | 1 | 336 | 1.05e-54 | 185 |
| MS.gene22338.t1 | MTR_1g099550 | 32.905 | 389 | 145 | 18 | 1 | 373 | 1 | 289 | 7.19e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22338.t1 | AT1G64080 | 41.387 | 447 | 164 | 20 | 1 | 390 | 1 | 406 | 1.08e-59 | 199 |
| MS.gene22338.t1 | AT5G52870 | 29.596 | 223 | 105 | 6 | 155 | 373 | 93 | 267 | 8.08e-19 | 87.0 |
| MS.gene22338.t1 | AT5G52870 | 29.596 | 223 | 105 | 6 | 155 | 373 | 93 | 267 | 1.05e-18 | 86.3 |
Find 82 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTTCAACTTTCTGATTC+TGG | 0.092598 | 5.4:-4346231 | None:intergenic |
| CTTGATTTCCTTGACAATTC+TGG | 0.186052 | 5.4:-4346996 | None:intergenic |
| TCAAGTGACAAGAGACTTTC+AGG | 0.210690 | 5.4:+4347014 | MS.gene22338:CDS |
| AGAGTTGTTTACAAACATTT+AGG | 0.218894 | 5.4:+4346499 | MS.gene22338:CDS |
| TATGCACAAGTATTTGAAAA+TGG | 0.291835 | 5.4:+4346303 | MS.gene22338:CDS |
| GTTGTTGTTGTTGGTTGTTA+TGG | 0.308570 | 5.4:-4345772 | None:intergenic |
| GGTGGAAGTGGTGGCGGTGG+TGG | 0.354666 | 5.4:-4345615 | None:intergenic |
| GTGAATTGAGGTTTGTTGTT+TGG | 0.372570 | 5.4:-4346013 | None:intergenic |
| GAGTTGTTTACAAACATTTA+GGG | 0.374177 | 5.4:+4346500 | MS.gene22338:CDS |
| TGGTGAAACCTCTTTACATA+AGG | 0.375753 | 5.4:+4346323 | MS.gene22338:CDS |
| CATGAGTCAGAGTCAGAAAC+AGG | 0.379249 | 5.4:+4346453 | MS.gene22338:CDS |
| ACTTTGAATTTGATTCTCTC+TGG | 0.384259 | 5.4:-4346133 | None:intergenic |
| TGAACCATCATTATCACCTT+TGG | 0.395194 | 5.4:+4346252 | MS.gene22338:CDS |
| AAGTTTCGTGTCTTCATGTC+TGG | 0.399226 | 5.4:+4346061 | MS.gene22338:CDS |
| TTCACCTCTAGATGCGTTGA+AGG | 0.400881 | 5.4:-4346650 | None:intergenic |
| TCACTTCTTTCATTGTTTGA+AGG | 0.403278 | 5.4:-4345884 | None:intergenic |
| GGTGAAACCTCTTTACATAA+GGG | 0.408319 | 5.4:+4346324 | MS.gene22338:CDS |
| GGTATTGACGGTGGTGGAAG+TGG | 0.417256 | 5.4:-4345627 | None:intergenic |
| TCTGGTTTGTTTGAGATTTG+TGG | 0.420698 | 5.4:-4346213 | None:intergenic |
| TTCAGTGAGTGATCCATTGC+GGG | 0.421885 | 5.4:+4346965 | MS.gene22338:CDS |
| CGAGGTGGTGGTGCTGTAGT+TGG | 0.425514 | 5.4:+4345572 | MS.gene22338:CDS |
| GAAGAGCCGTTCCGCGTCTT+CGG | 0.426597 | 5.4:+4346522 | MS.gene22338:CDS |
| GAAACAGGGGAATAATATTC+CGG | 0.441776 | 5.4:+4346468 | MS.gene22338:CDS |
| CAGCAGCAAGATGGAATTCA+AGG | 0.444566 | 5.4:+4346604 | MS.gene22338:CDS |
| CGAGAAACCCTTATGTAAAG+AGG | 0.451055 | 5.4:-4346331 | None:intergenic |
| GACGGTGGTGGAAGTGGTGG+CGG | 0.459038 | 5.4:-4345621 | None:intergenic |
| TTGTCGAGAATGAAGGAAGA+AGG | 0.462443 | 5.4:-4345971 | None:intergenic |
| GGTGGTGGAAGTGGTGGCGG+TGG | 0.464616 | 5.4:-4345618 | None:intergenic |
| GAGAATGGTGGTGGTATTGA+CGG | 0.469232 | 5.4:-4345639 | None:intergenic |
| AACAATGAAGCAGTGAATTG+AGG | 0.470671 | 5.4:-4346025 | None:intergenic |
| TTGTTGTTGGTTGTTATGGT+TGG | 0.471851 | 5.4:-4345768 | None:intergenic |
| TCTTCCAAAGGTGATAATGA+TGG | 0.471973 | 5.4:-4346256 | None:intergenic |
| CCGTTCCGCGTCTTCGGCAG+TGG | 0.475358 | 5.4:+4346528 | MS.gene22338:CDS |
| GGCAGTGGCGGCTTCTCCGC+CGG | 0.476606 | 5.4:+4346543 | MS.gene22338:CDS |
| CTTAAATACTGGCGAGGTGG+TGG | 0.477962 | 5.4:+4345560 | MS.gene22338:CDS |
| TCAGAGGATTTATTCTTCAA+AGG | 0.479259 | 5.4:+4345929 | MS.gene22338:CDS |
| TAAATCAAGCCCGGGTGAAA+AGG | 0.488748 | 5.4:+4346372 | MS.gene22338:CDS |
| TCTTTCACTGTCACCTTCAG+AGG | 0.498693 | 5.4:+4345913 | MS.gene22338:CDS |
| GCTTTCAGCGGTGGTGAGAA+TGG | 0.502612 | 5.4:-4345654 | None:intergenic |
| CCATGGTGATAAATCAAGCC+CGG | 0.510297 | 5.4:+4346363 | MS.gene22338:CDS |
| GTAAACTCTAAGTCAAAGAA+AGG | 0.510667 | 5.4:-4345701 | None:intergenic |
| CAGGGGAATAATATTCCGGC+AGG | 0.511050 | 5.4:+4346472 | MS.gene22338:CDS |
| CTGTTTCTGACTCTGACTCA+TGG | 0.516187 | 5.4:-4346452 | None:intergenic |
| AGACATGAAGACACGAAACT+TGG | 0.531689 | 5.4:-4346059 | None:intergenic |
| AGCCGCCACTGCCGAAGACG+CGG | 0.542768 | 5.4:-4346533 | None:intergenic |
| TCTGGTGAAATTTCCCGCAA+TGG | 0.548892 | 5.4:-4346978 | None:intergenic |
| ATTGACGGTGGTGGAAGTGG+TGG | 0.555265 | 5.4:-4345624 | None:intergenic |
| TAAACAACTCTTAGCCCTGC+CGG | 0.558745 | 5.4:-4346487 | None:intergenic |
| GTCGTCGCTGCTTTCAGCGG+TGG | 0.560517 | 5.4:-4345663 | None:intergenic |
| GTTGTTGTTGTCGAGAATGA+AGG | 0.560905 | 5.4:-4345978 | None:intergenic |
| TTCCGCGTCTTCGGCAGTGG+CGG | 0.563880 | 5.4:+4346531 | MS.gene22338:CDS |
| CCACTGCCGAAGACGCGGAA+CGG | 0.563993 | 5.4:-4346528 | None:intergenic |
| GGTGGTGGTATTGACGGTGG+TGG | 0.568497 | 5.4:-4345633 | None:intergenic |
| GCGGTGGTGGAGTCAGAAGA+AGG | 0.572835 | 5.4:-4345602 | None:intergenic |
| TTGAAGAATAAATCCTCTGA+AGG | 0.584940 | 5.4:-4345926 | None:intergenic |
| GATAGTGAAGATGATGATGA+TGG | 0.588770 | 5.4:+4345824 | MS.gene22338:CDS |
| AAATTTCACCAGAATTGTCA+AGG | 0.590930 | 5.4:+4346988 | MS.gene22338:CDS |
| TTTACATAAGGGTTTCTCGT+AGG | 0.595831 | 5.4:+4346335 | MS.gene22338:CDS |
| CATGGTGATAAATCAAGCCC+GGG | 0.603985 | 5.4:+4346364 | MS.gene22338:CDS |
| CTGGTGAAAAGTGAAACAAT+GGG | 0.611998 | 5.4:-4346166 | None:intergenic |
| AGCGACGACAATGATGATGA+AGG | 0.617421 | 5.4:+4345677 | MS.gene22338:CDS |
| TCTGGTGAAAAGTGAAACAA+TGG | 0.618237 | 5.4:-4346167 | None:intergenic |
| AGCGGTGGTGAGAATGGTGG+TGG | 0.618375 | 5.4:-4345648 | None:intergenic |
| AATGGTGGTGGTATTGACGG+TGG | 0.624051 | 5.4:-4345636 | None:intergenic |
| ATTGTCGTCGCTGCTTTCAG+CGG | 0.629569 | 5.4:-4345666 | None:intergenic |
| ATGAGTCAGAGTCAGAAACA+GGG | 0.631207 | 5.4:+4346454 | MS.gene22338:CDS |
| AGATCCTTCAACGCATCTAG+AGG | 0.631223 | 5.4:+4346646 | MS.gene22338:CDS |
| GCTGCAAAAGCGAATCATCA+CGG | 0.637302 | 5.4:-4346585 | None:intergenic |
| CGTTTCGACGACACTAACAC+CGG | 0.649892 | 5.4:-4346562 | None:intergenic |
| GAAGCAGAAATAGCGACGGA+AGG | 0.656677 | 5.4:+4346397 | MS.gene22338:CDS |
| AGTGAAGATGATGATGATGG+TGG | 0.659705 | 5.4:+4345827 | MS.gene22338:CDS |
| CCGGGCTTGATTTATCACCA+TGG | 0.662133 | 5.4:-4346363 | None:intergenic |
| AATGGATCACTCACTGAACG+TGG | 0.662626 | 5.4:-4346960 | None:intergenic |
| GTTTCTCGTAGGTACAGCCA+TGG | 0.666123 | 5.4:+4346346 | MS.gene22338:CDS |
| AGCTTGCTTAAATACTGGCG+AGG | 0.670456 | 5.4:+4345554 | MS.gene22338:CDS |
| GTTCAGTGAGTGATCCATTG+CGG | 0.671555 | 5.4:+4346964 | MS.gene22338:CDS |
| TTGCTTAAATACTGGCGAGG+TGG | 0.681386 | 5.4:+4345557 | MS.gene22338:CDS |
| GGTTGAAGCAGAAATAGCGA+CGG | 0.682979 | 5.4:+4346393 | MS.gene22338:CDS |
| TGAGTCAGAGTCAGAAACAG+GGG | 0.683202 | 5.4:+4346455 | MS.gene22338:CDS |
| AGGGGAATAATATTCCGGCA+GGG | 0.693221 | 5.4:+4346473 | MS.gene22338:CDS |
| TTCGACGACACTAACACCGG+CGG | 0.696268 | 5.4:-4346559 | None:intergenic |
| TTCAGCGGTGGTGAGAATGG+TGG | 0.706931 | 5.4:-4345651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTTAATTAATTT+TGG | + | chr5.4:4346866-4346885 | MS.gene22338:intron | 0.0% |
| !! | AATAAAGACTACATAAAAAA+TGG | - | chr5.4:4346714-4346733 | None:intergenic | 15.0% |
| !! | TAAAAAATGGAATAATTTAG+AGG | - | chr5.4:4346701-4346720 | None:intergenic | 15.0% |
| !!! | TTAATTAATTTTGGTGTAAA+TGG | + | chr5.4:4346875-4346894 | MS.gene22338:intron | 15.0% |
| !!! | TTGATGATATTATATAGTTT+AGG | + | chr5.4:4346793-4346812 | MS.gene22338:intron | 15.0% |
| ! | AGAGTTGTTTACAAACATTT+AGG | + | chr5.4:4346499-4346518 | MS.gene22338:CDS | 25.0% |
| ! | GAGTTGTTTACAAACATTTA+GGG | + | chr5.4:4346500-4346519 | MS.gene22338:CDS | 25.0% |
| ! | TAATTTAGAGGCTAAATTGA+TGG | - | chr5.4:4346689-4346708 | None:intergenic | 25.0% |
| ! | TATGCACAAGTATTTGAAAA+TGG | + | chr5.4:4346303-4346322 | MS.gene22338:CDS | 25.0% |
| AAACCCGTCAATTTAAATTG+AGG | + | chr5.4:4346744-4346763 | MS.gene22338:intron | 30.0% | |
| AAATTTCACCAGAATTGTCA+AGG | + | chr5.4:4346988-4347007 | MS.gene22338:CDS | 30.0% | |
| AACCCGTCAATTTAAATTGA+GGG | + | chr5.4:4346745-4346764 | MS.gene22338:intron | 30.0% | |
| AAGAAGAAGAAGAAGAAGAT+GGG | + | chr5.4:4345735-4345754 | MS.gene22338:CDS | 30.0% | |
| ACTTTGAATTTGATTCTCTC+TGG | - | chr5.4:4346136-4346155 | None:intergenic | 30.0% | |
| AGTCCCTCAATTTAAATTGA+CGG | - | chr5.4:4346751-4346770 | None:intergenic | 30.0% | |
| GTAAACTCTAAGTCAAAGAA+AGG | - | chr5.4:4345704-4345723 | None:intergenic | 30.0% | |
| TCACTTCTTTCATTGTTTGA+AGG | - | chr5.4:4345887-4345906 | None:intergenic | 30.0% | |
| TCAGAGGATTTATTCTTCAA+AGG | + | chr5.4:4345929-4345948 | MS.gene22338:CDS | 30.0% | |
| TTGAAGAATAAATCCTCTGA+AGG | - | chr5.4:4345929-4345948 | None:intergenic | 30.0% | |
| !! | CTTCTTTTCAAGAACAGAAT+CGG | - | chr5.4:4346104-4346123 | None:intergenic | 30.0% |
| !!! | CTTTTAGCTTGCTTAAATAC+TGG | + | chr5.4:4345549-4345568 | MS.gene22338:CDS | 30.0% |
| AACAATGAAGCAGTGAATTG+AGG | - | chr5.4:4346028-4346047 | None:intergenic | 35.0% | |
| CATGTTCAACTTTCTGATTC+TGG | - | chr5.4:4346234-4346253 | None:intergenic | 35.0% | |
| CTGGTGAAAAGTGAAACAAT+GGG | - | chr5.4:4346169-4346188 | None:intergenic | 35.0% | |
| CTTGATTTCCTTGACAATTC+TGG | - | chr5.4:4346999-4347018 | None:intergenic | 35.0% | |
| GAAAAACGTTTCTCTTCCAA+AGG | - | chr5.4:4346271-4346290 | None:intergenic | 35.0% | |
| GAAACAGGGGAATAATATTC+CGG | + | chr5.4:4346468-4346487 | MS.gene22338:CDS | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | + | chr5.4:4345731-4345750 | MS.gene22338:CDS | 35.0% | |
| GGTGAAACCTCTTTACATAA+GGG | + | chr5.4:4346324-4346343 | MS.gene22338:CDS | 35.0% | |
| GTCCCTCAATTTAAATTGAC+GGG | - | chr5.4:4346750-4346769 | None:intergenic | 35.0% | |
| TCTGGTGAAAAGTGAAACAA+TGG | - | chr5.4:4346170-4346189 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTTCTTCTTC+AGG | - | chr5.4:4345731-4345750 | None:intergenic | 35.0% | |
| TGAACCATCATTATCACCTT+TGG | + | chr5.4:4346252-4346271 | MS.gene22338:CDS | 35.0% | |
| TGGTGAAACCTCTTTACATA+AGG | + | chr5.4:4346323-4346342 | MS.gene22338:CDS | 35.0% | |
| TTTACATAAGGGTTTCTCGT+AGG | + | chr5.4:4346335-4346354 | MS.gene22338:CDS | 35.0% | |
| ! | GATAGTGAAGATGATGATGA+TGG | + | chr5.4:4345824-4345843 | MS.gene22338:CDS | 35.0% |
| ! | GTTGTTGTTGTTGGTTGTTA+TGG | - | chr5.4:4345775-4345794 | None:intergenic | 35.0% |
| ! | GTTTTCTTCACTTTCAGCTA+CGG | - | chr5.4:4346428-4346447 | None:intergenic | 35.0% |
| ! | TCTTCCAAAGGTGATAATGA+TGG | - | chr5.4:4346259-4346278 | None:intergenic | 35.0% |
| ! | TTGTTGTTGGTTGTTATGGT+TGG | - | chr5.4:4345771-4345790 | None:intergenic | 35.0% |
| !! | GGAAGAGAAACGTTTTTCAA+AGG | + | chr5.4:4346273-4346292 | MS.gene22338:CDS | 35.0% |
| !! | GTGAATTGAGGTTTGTTGTT+TGG | - | chr5.4:4346016-4346035 | None:intergenic | 35.0% |
| !! | GTTCTTGTTGTTGTTGTTGT+TGG | - | chr5.4:4345784-4345803 | None:intergenic | 35.0% |
| !! | TCAAGAACAGAATCGGTTTT+TGG | - | chr5.4:4346097-4346116 | None:intergenic | 35.0% |
| !! | TCTGGTTTGTTTGAGATTTG+TGG | - | chr5.4:4346216-4346235 | None:intergenic | 35.0% |
| !!! | AGATTTGTGGTTGCTGTTTT+TGG | - | chr5.4:4346203-4346222 | None:intergenic | 35.0% |
| AAGTTTCGTGTCTTCATGTC+TGG | + | chr5.4:4346061-4346080 | MS.gene22338:CDS | 40.0% | |
| AGACATGAAGACACGAAACT+TGG | - | chr5.4:4346062-4346081 | None:intergenic | 40.0% | |
| ATGAGTCAGAGTCAGAAACA+GGG | + | chr5.4:4346454-4346473 | MS.gene22338:CDS | 40.0% | |
| CGAGAAACCCTTATGTAAAG+AGG | - | chr5.4:4346334-4346353 | None:intergenic | 40.0% | |
| TCAAGTGACAAGAGACTTTC+AGG | + | chr5.4:4347014-4347033 | MS.gene22338:CDS | 40.0% | |
| TTGTCGAGAATGAAGGAAGA+AGG | - | chr5.4:4345974-4345993 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTCGAGAATGA+AGG | - | chr5.4:4345981-4346000 | None:intergenic | 40.0% |
| !! | AGTGAAGATGATGATGATGG+TGG | + | chr5.4:4345827-4345846 | MS.gene22338:CDS | 40.0% |
| !!! | GTTTTTGGAACTGTTGTCTC+TGG | - | chr5.4:4346188-4346207 | None:intergenic | 40.0% |
| AATGGATCACTCACTGAACG+TGG | - | chr5.4:4346963-4346982 | None:intergenic | 45.0% | |
| AGATCCTTCAACGCATCTAG+AGG | + | chr5.4:4346646-4346665 | MS.gene22338:CDS | 45.0% | |
| AGGGGAATAATATTCCGGCA+GGG | + | chr5.4:4346473-4346492 | MS.gene22338:CDS | 45.0% | |
| CAGCAGCAAGATGGAATTCA+AGG | + | chr5.4:4346604-4346623 | MS.gene22338:CDS | 45.0% | |
| CATGAGTCAGAGTCAGAAAC+AGG | + | chr5.4:4346453-4346472 | MS.gene22338:CDS | 45.0% | |
| CATGGTGATAAATCAAGCCC+GGG | + | chr5.4:4346364-4346383 | MS.gene22338:CDS | 45.0% | |
| CCATGGTGATAAATCAAGCC+CGG | + | chr5.4:4346363-4346382 | MS.gene22338:CDS | 45.0% | |
| GCTGCAAAAGCGAATCATCA+CGG | - | chr5.4:4346588-4346607 | None:intergenic | 45.0% | |
| GGTTGAAGCAGAAATAGCGA+CGG | + | chr5.4:4346393-4346412 | MS.gene22338:CDS | 45.0% | |
| GTTCAGTGAGTGATCCATTG+CGG | + | chr5.4:4346964-4346983 | MS.gene22338:CDS | 45.0% | |
| TAAACAACTCTTAGCCCTGC+CGG | - | chr5.4:4346490-4346509 | None:intergenic | 45.0% | |
| TAAATCAAGCCCGGGTGAAA+AGG | + | chr5.4:4346372-4346391 | MS.gene22338:CDS | 45.0% | |
| TCTGGTGAAATTTCCCGCAA+TGG | - | chr5.4:4346981-4347000 | None:intergenic | 45.0% | |
| TCTTTCACTGTCACCTTCAG+AGG | + | chr5.4:4345913-4345932 | MS.gene22338:CDS | 45.0% | |
| TGAGTCAGAGTCAGAAACAG+GGG | + | chr5.4:4346455-4346474 | MS.gene22338:CDS | 45.0% | |
| TTCACCTCTAGATGCGTTGA+AGG | - | chr5.4:4346653-4346672 | None:intergenic | 45.0% | |
| TTCAGTGAGTGATCCATTGC+GGG | + | chr5.4:4346965-4346984 | MS.gene22338:CDS | 45.0% | |
| TTGCTTAAATACTGGCGAGG+TGG | + | chr5.4:4345557-4345576 | MS.gene22338:CDS | 45.0% | |
| ! | AGCGACGACAATGATGATGA+AGG | + | chr5.4:4345677-4345696 | MS.gene22338:CDS | 45.0% |
| ! | AGCTTGCTTAAATACTGGCG+AGG | + | chr5.4:4345554-4345573 | MS.gene22338:CDS | 45.0% |
| ! | TCTGCTTCAACCTTTTCACC+CGG | - | chr5.4:4346385-4346404 | None:intergenic | 45.0% |
| !! | CTGTTTCTGACTCTGACTCA+TGG | - | chr5.4:4346455-4346474 | None:intergenic | 45.0% |
| !! | GAGAATGGTGGTGGTATTGA+CGG | - | chr5.4:4345642-4345661 | None:intergenic | 45.0% |
| CAGGGGAATAATATTCCGGC+AGG | + | chr5.4:4346472-4346491 | MS.gene22338:CDS | 50.0% | |
| CCGGGCTTGATTTATCACCA+TGG | - | chr5.4:4346366-4346385 | None:intergenic | 50.0% | |
| CGTTTCGACGACACTAACAC+CGG | - | chr5.4:4346565-4346584 | None:intergenic | 50.0% | |
| CTTAAATACTGGCGAGGTGG+TGG | + | chr5.4:4345560-4345579 | MS.gene22338:CDS | 50.0% | |
| GAAGCAGAAATAGCGACGGA+AGG | + | chr5.4:4346397-4346416 | MS.gene22338:CDS | 50.0% | |
| GTTTCTCGTAGGTACAGCCA+TGG | + | chr5.4:4346346-4346365 | MS.gene22338:CDS | 50.0% | |
| ! | ATTGTCGTCGCTGCTTTCAG+CGG | - | chr5.4:4345669-4345688 | None:intergenic | 50.0% |
| ! | CTGCTTCAACCTTTTCACCC+GGG | - | chr5.4:4346384-4346403 | None:intergenic | 50.0% |
| !! | AATGGTGGTGGTATTGACGG+TGG | - | chr5.4:4345639-4345658 | None:intergenic | 50.0% |
| !! | TCGCTTTTGCAGCAGCAAGA+TGG | + | chr5.4:4346595-4346614 | MS.gene22338:CDS | 50.0% |
| GCTTTCAGCGGTGGTGAGAA+TGG | - | chr5.4:4345657-4345676 | None:intergenic | 55.0% | |
| TTCAGCGGTGGTGAGAATGG+TGG | - | chr5.4:4345654-4345673 | None:intergenic | 55.0% | |
| TTCGACGACACTAACACCGG+CGG | - | chr5.4:4346562-4346581 | None:intergenic | 55.0% | |
| !! | ATTGACGGTGGTGGAAGTGG+TGG | - | chr5.4:4345627-4345646 | None:intergenic | 55.0% |
| !! | GGTATTGACGGTGGTGGAAG+TGG | - | chr5.4:4345630-4345649 | None:intergenic | 55.0% |
| AGCGGTGGTGAGAATGGTGG+TGG | - | chr5.4:4345651-4345670 | None:intergenic | 60.0% | |
| GAAGAGCCGTTCCGCGTCTT+CGG | + | chr5.4:4346522-4346541 | MS.gene22338:CDS | 60.0% | |
| !! | CGAGGTGGTGGTGCTGTAGT+TGG | + | chr5.4:4345572-4345591 | MS.gene22338:CDS | 60.0% |
| !! | GCGGTGGTGGAGTCAGAAGA+AGG | - | chr5.4:4345605-4345624 | None:intergenic | 60.0% |
| !! | GGTGGTGGTATTGACGGTGG+TGG | - | chr5.4:4345636-4345655 | None:intergenic | 60.0% |
| CCACTGCCGAAGACGCGGAA+CGG | - | chr5.4:4346531-4346550 | None:intergenic | 65.0% | |
| TTCCGCGTCTTCGGCAGTGG+CGG | + | chr5.4:4346531-4346550 | MS.gene22338:CDS | 65.0% | |
| ! | GTCGTCGCTGCTTTCAGCGG+TGG | - | chr5.4:4345666-4345685 | None:intergenic | 65.0% |
| !! | GACGGTGGTGGAAGTGGTGG+CGG | - | chr5.4:4345624-4345643 | None:intergenic | 65.0% |
| AGCCGCCACTGCCGAAGACG+CGG | - | chr5.4:4346536-4346555 | None:intergenic | 70.0% | |
| CCGTTCCGCGTCTTCGGCAG+TGG | + | chr5.4:4346528-4346547 | MS.gene22338:CDS | 70.0% | |
| !! | GGTGGAAGTGGTGGCGGTGG+TGG | - | chr5.4:4345618-4345637 | None:intergenic | 70.0% |
| !! | GGTGGTGGAAGTGGTGGCGG+TGG | - | chr5.4:4345621-4345640 | None:intergenic | 70.0% |
| GGCAGTGGCGGCTTCTCCGC+CGG | + | chr5.4:4346543-4346562 | MS.gene22338:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4345542 | 4347040 | 4345542 | ID=MS.gene22338 |
| chr5.4 | mRNA | 4345542 | 4347040 | 4345542 | ID=MS.gene22338.t1;Parent=MS.gene22338 |
| chr5.4 | exon | 4345542 | 4346667 | 4345542 | ID=MS.gene22338.t1.exon1;Parent=MS.gene22338.t1 |
| chr5.4 | CDS | 4345542 | 4346667 | 4345542 | ID=cds.MS.gene22338.t1;Parent=MS.gene22338.t1 |
| chr5.4 | exon | 4346937 | 4347040 | 4346937 | ID=MS.gene22338.t1.exon2;Parent=MS.gene22338.t1 |
| chr5.4 | CDS | 4346937 | 4347040 | 4346937 | ID=cds.MS.gene22338.t1;Parent=MS.gene22338.t1 |
| Gene Sequence |
| Protein sequence |
