Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22476.t1 | XP_003625563.1 | 98.9 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 5.70E-148 | 533.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22476.t1 | Q9ZUU1 | 78.2 | 243 | 51 | 2 | 27 | 268 | 43 | 284 | 3.0e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22476.t1 | G7L1P0 | 98.9 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 4.1e-148 | 533.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050169 | MS.gene22476 | 0.923782 | 1.69E-89 | -1.69E-46 |
| MS.gene052361 | MS.gene22476 | 0.819908 | 9.07E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011389 | MS.gene22476 | PPI |
| MS.gene033347 | MS.gene22476 | PPI |
| MS.gene22476 | MS.gene057156 | PPI |
| MS.gene065461 | MS.gene22476 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22476.t1 | MTR_7g100530 | 98.881 | 268 | 3 | 0 | 1 | 268 | 1 | 268 | 0.0 | 543 |
| MS.gene22476.t1 | MTR_1g067050 | 74.476 | 286 | 55 | 4 | 1 | 268 | 1 | 286 | 2.55e-147 | 414 |
| MS.gene22476.t1 | MTR_2g461290 | 34.031 | 191 | 105 | 4 | 43 | 230 | 79 | 251 | 7.34e-27 | 109 |
| MS.gene22476.t1 | MTR_4g103800 | 29.412 | 204 | 122 | 4 | 38 | 234 | 31 | 219 | 4.91e-24 | 97.4 |
| MS.gene22476.t1 | MTR_4g035170 | 30.052 | 193 | 114 | 4 | 43 | 232 | 94 | 268 | 1.73e-20 | 89.0 |
| MS.gene22476.t1 | MTR_4g103800 | 30.714 | 140 | 90 | 2 | 38 | 172 | 31 | 168 | 2.16e-17 | 78.6 |
| MS.gene22476.t1 | MTR_4g035850 | 24.107 | 224 | 125 | 3 | 31 | 252 | 49 | 229 | 9.13e-16 | 75.1 |
| MS.gene22476.t1 | MTR_4g035850 | 24.107 | 224 | 125 | 3 | 31 | 252 | 26 | 206 | 9.95e-16 | 74.3 |
| MS.gene22476.t1 | MTR_5g068940 | 23.361 | 244 | 142 | 3 | 11 | 252 | 6 | 206 | 1.11e-15 | 74.3 |
| MS.gene22476.t1 | MTR_8g009520 | 24.424 | 217 | 122 | 4 | 34 | 249 | 18 | 193 | 1.84e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22476.t1 | AT2G37250 | 70.280 | 286 | 65 | 5 | 1 | 268 | 1 | 284 | 1.51e-138 | 391 |
| MS.gene22476.t1 | AT2G39270 | 71.713 | 251 | 70 | 1 | 18 | 268 | 46 | 295 | 6.93e-118 | 340 |
| MS.gene22476.t1 | AT3G01820 | 36.087 | 230 | 103 | 6 | 34 | 258 | 60 | 250 | 1.40e-37 | 133 |
| MS.gene22476.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 9.34e-30 | 117 |
| MS.gene22476.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 9.56e-30 | 117 |
| MS.gene22476.t1 | AT5G63400 | 31.731 | 208 | 124 | 4 | 38 | 240 | 35 | 229 | 5.93e-27 | 105 |
| MS.gene22476.t1 | AT5G50370 | 31.220 | 205 | 123 | 4 | 38 | 237 | 36 | 227 | 1.55e-26 | 104 |
| MS.gene22476.t1 | AT5G50370 | 31.959 | 194 | 114 | 4 | 38 | 226 | 36 | 216 | 6.67e-25 | 99.4 |
| MS.gene22476.t1 | AT5G47840 | 31.282 | 195 | 110 | 5 | 37 | 228 | 65 | 238 | 8.78e-22 | 92.0 |
| MS.gene22476.t1 | AT5G47840 | 30.457 | 197 | 116 | 4 | 37 | 230 | 65 | 243 | 1.10e-21 | 92.0 |
| MS.gene22476.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 38 | 172 | 35 | 172 | 4.44e-21 | 88.2 |
| MS.gene22476.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 1.07e-20 | 89.0 |
| MS.gene22476.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 1.07e-20 | 89.0 |
| MS.gene22476.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.47e-18 | 80.5 |
| MS.gene22476.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.47e-18 | 80.5 |
| MS.gene22476.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene22476.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene22476.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 3.39e-17 | 78.2 |
| MS.gene22476.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 4.71e-17 | 77.8 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCATCTGACACTAAT+TGG | 0.227977 | 7.4:-9737691 | None:intergenic |
| ATTCTCACCCTTGATGTTAA+TGG | 0.236959 | 7.4:-9738086 | None:intergenic |
| TTCCATGAATCAGGAAATAT+TGG | 0.279986 | 7.4:+9737946 | MS.gene22476:intron |
| GCGTTTAACGAGGCGGGTTA+TGG | 0.291921 | 7.4:-9736453 | None:intergenic |
| TCCACGCGCTAAGGGATAAA+AGG | 0.310626 | 7.4:-9736483 | None:intergenic |
| CTAATGGAGTTTGAGCTTCC+TGG | 0.337802 | 7.4:+9738482 | MS.gene22476:CDS |
| AACAACTTTGGCCAAGATTC+CGG | 0.353841 | 7.4:-9738512 | None:intergenic |
| ACGCGCCACCGCGTGATAAC+AGG | 0.363520 | 7.4:+9736528 | MS.gene22476:CDS |
| GGACAAGCCAAAGGCGAATC+AGG | 0.365095 | 7.4:+9737746 | MS.gene22476:CDS |
| TTGCAAGCAGTGCTTCTTCT+CGG | 0.365762 | 7.4:-9738009 | None:intergenic |
| ACAACTTTGGCCAAGATTCC+GGG | 0.378273 | 7.4:-9738511 | None:intergenic |
| AATGAAACCTGATTCGCCTT+TGG | 0.382130 | 7.4:-9737753 | None:intergenic |
| CGCCATGAGCTTTCCTCCAA+TGG | 0.396544 | 7.4:+9736659 | MS.gene22476:CDS |
| AGGGGAGCCATACTAATTCC+AGG | 0.402077 | 7.4:-9738115 | None:intergenic |
| GAATCAGGTTTCATTCTTGA+TGG | 0.402493 | 7.4:+9737761 | MS.gene22476:CDS |
| TTCTTAGGCTGTCCCGGCGT+TGG | 0.409479 | 7.4:+9736566 | MS.gene22476:CDS |
| AAATGGAACCTGGGAAGAAA+GGG | 0.413958 | 7.4:-9736684 | None:intergenic |
| CGAAGCCTTTCTTTGACTAC+TGG | 0.419226 | 7.4:-9738193 | None:intergenic |
| AAAATGGAACCTGGGAAGAA+AGG | 0.419929 | 7.4:-9736685 | None:intergenic |
| TTCGCCTTTGGCTTGTCCTT+CGG | 0.420172 | 7.4:-9737741 | None:intergenic |
| GCTTCGTATATACAATGAAT+TGG | 0.421380 | 7.4:+9738210 | MS.gene22476:CDS |
| CTGGAGGGATCCCGGAATCT+TGG | 0.426061 | 7.4:+9738501 | MS.gene22476:CDS |
| ATTAACATCAAGGGTGAGAA+TGG | 0.438121 | 7.4:+9738088 | MS.gene22476:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 7.4:-9737788 | None:intergenic |
| GTCCAAGCTCATCACTCGTT+CGG | 0.462893 | 7.4:+9738159 | MS.gene22476:CDS |
| TTAAGAGCATGCAACAACTT+TGG | 0.463437 | 7.4:-9738524 | None:intergenic |
| TACAATGCTCAGGAGGAAGC+AGG | 0.474529 | 7.4:-9738135 | None:intergenic |
| GGCTGTCCCGGCGTTGGTAA+AGG | 0.475495 | 7.4:+9736572 | MS.gene22476:CDS |
| CGGTGGCGCGTGAGAATATG+AGG | 0.478955 | 7.4:-9736516 | None:intergenic |
| CCGTAGCCGAGGAAAACTAA+TGG | 0.480423 | 7.4:+9738466 | MS.gene22476:CDS |
| AGCCGCCTCTGCAACCTCCT+CGG | 0.480794 | 7.4:+9736605 | MS.gene22476:CDS |
| GTTGCAGAGGCGGCTGGCGT+AGG | 0.481502 | 7.4:-9736597 | None:intergenic |
| TGTTGCCTCCATTAACATCA+AGG | 0.487139 | 7.4:+9738078 | MS.gene22476:CDS |
| GGAGGAGAATCCACGCGCTA+AGG | 0.487598 | 7.4:-9736492 | None:intergenic |
| CACCGAGGAGGTTGCAGAGG+CGG | 0.490243 | 7.4:-9736607 | None:intergenic |
| GAGCTTGTTGTCTAAGAGAC+TGG | 0.490979 | 7.4:+9737718 | MS.gene22476:CDS |
| CAAGATTCCGGGATCCCTCC+AGG | 0.501896 | 7.4:-9738500 | None:intergenic |
| TGAGCTTCCTGGAGGGATCC+CGG | 0.505662 | 7.4:+9738493 | MS.gene22476:CDS |
| TGGGTGCCCTGGAATTAGTA+TGG | 0.509227 | 7.4:+9738108 | MS.gene22476:CDS |
| CTGAACCAGTAGTCAAAGAA+AGG | 0.515149 | 7.4:+9738188 | MS.gene22476:CDS |
| GAGGAGGTTGCAGAGGCGGC+TGG | 0.516659 | 7.4:-9736603 | None:intergenic |
| TGTGGTGCGTTTAACGAGGC+GGG | 0.525206 | 7.4:-9736459 | None:intergenic |
| AAGGGTGAGAATGGGTGCCC+TGG | 0.527488 | 7.4:+9738097 | MS.gene22476:CDS |
| AGCTTGGACATACAATGCTC+AGG | 0.536250 | 7.4:-9738145 | None:intergenic |
| GGTGTTCCTCACATCGCTAC+CGG | 0.536592 | 7.4:+9736626 | MS.gene22476:CDS |
| GGCCATTGGAGGAAAGCTCA+TGG | 0.538613 | 7.4:-9736661 | None:intergenic |
| CGCGTGAGAATATGAGGAGG+AGG | 0.547324 | 7.4:-9736510 | None:intergenic |
| GGTGACAGACATTGACTTGG+TGG | 0.549406 | 7.4:+9737973 | MS.gene22476:CDS |
| CTCATGGCGAACAAGATCTC+CGG | 0.552425 | 7.4:-9736645 | None:intergenic |
| ACAATGCTCAGGAGGAAGCA+GGG | 0.553118 | 7.4:-9738134 | None:intergenic |
| ATGAATCAGGAAATATTGGA+AGG | 0.560014 | 7.4:+9737950 | MS.gene22476:intron |
| TTAACATCAAGGGTGAGAAT+GGG | 0.564208 | 7.4:+9738089 | MS.gene22476:CDS |
| CTACGGTAAAATCCCTCCAC+AGG | 0.569867 | 7.4:-9738449 | None:intergenic |
| GAATCAGGAAATATTGGAAG+GGG | 0.571838 | 7.4:+9737952 | MS.gene22476:intron |
| CGCTAAGGGATAAAAGGATG+TGG | 0.573069 | 7.4:-9736477 | None:intergenic |
| CTATCAGAAATCGTAAATCA+AGG | 0.576086 | 7.4:+9737668 | MS.gene22476:CDS |
| CTCACCCTTGATGTTAATGG+AGG | 0.585838 | 7.4:-9738083 | None:intergenic |
| ATTGTAGAGTCAACCTGTGG+AGG | 0.587568 | 7.4:+9738436 | MS.gene22476:intron |
| ATCCGAACGAGTGATGAGCT+TGG | 0.590005 | 7.4:-9738161 | None:intergenic |
| TGAATCAGGAAATATTGGAA+GGG | 0.590988 | 7.4:+9737951 | MS.gene22476:intron |
| TAGGTACCTTTACCAACGCC+GGG | 0.591127 | 7.4:-9736578 | None:intergenic |
| CTGGCCGAAGGACAAGCCAA+AGG | 0.598805 | 7.4:+9737737 | MS.gene22476:CDS |
| GACTGCAAGTTCTCCTACCG+AGG | 0.599285 | 7.4:-9738036 | None:intergenic |
| TTGTAGAGTCAACCTGTGGA+GGG | 0.600517 | 7.4:+9738437 | MS.gene22476:intron |
| GCACTGCTTGCAAAATGCCT+CGG | 0.600739 | 7.4:+9738019 | MS.gene22476:CDS |
| GTTGCCTCCATTAACATCAA+GGG | 0.606046 | 7.4:+9738079 | MS.gene22476:CDS |
| GAACACCGAGGAGGTTGCAG+AGG | 0.607957 | 7.4:-9736610 | None:intergenic |
| GAGGAGAATCCACGCGCTAA+GGG | 0.613124 | 7.4:-9736491 | None:intergenic |
| TGATAACAGGAATATTCAGT+GGG | 0.619397 | 7.4:+9736541 | MS.gene22476:CDS |
| GGGGAGCCATACTAATTCCA+GGG | 0.625204 | 7.4:-9738114 | None:intergenic |
| CAATGCTCAGGAGGAAGCAG+GGG | 0.629253 | 7.4:-9738133 | None:intergenic |
| GTGATAACAGGAATATTCAG+TGG | 0.631365 | 7.4:+9736540 | MS.gene22476:CDS |
| AATGGAACCTGGGAAGAAAG+GGG | 0.635071 | 7.4:-9736683 | None:intergenic |
| ATGGAGTTTGAGCTTCCTGG+AGG | 0.638339 | 7.4:+9738485 | MS.gene22476:CDS |
| GTAGGTACCTTTACCAACGC+CGG | 0.638576 | 7.4:-9736579 | None:intergenic |
| AGGATGTGGTGCGTTTAACG+AGG | 0.640197 | 7.4:-9736463 | None:intergenic |
| TGGAGTTTGAGCTTCCTGGA+GGG | 0.640406 | 7.4:+9738486 | MS.gene22476:CDS |
| TGCTTGCAAAATGCCTCGGT+AGG | 0.644240 | 7.4:+9738023 | MS.gene22476:CDS |
| AGAACTTGCAGTCAGTGTGG+AGG | 0.647767 | 7.4:+9738046 | MS.gene22476:CDS |
| TTGTCTAAGAGACTGGCCGA+AGG | 0.649173 | 7.4:+9737725 | MS.gene22476:CDS |
| ATGGAACCTGGGAAGAAAGG+GGG | 0.650436 | 7.4:-9736682 | None:intergenic |
| ATGTGGTGCGTTTAACGAGG+CGG | 0.651506 | 7.4:-9736460 | None:intergenic |
| AGATCTCCGGTAGCGATGTG+AGG | 0.653463 | 7.4:-9736632 | None:intergenic |
| TTGGACATACAATGCTCAGG+AGG | 0.663374 | 7.4:-9738142 | None:intergenic |
| ATATTCCTGTTATCACGCGG+TGG | 0.668275 | 7.4:-9736533 | None:intergenic |
| AGGGGTGACAGACATTGACT+TGG | 0.668576 | 7.4:+9737970 | MS.gene22476:CDS |
| AGGAGAACTTGCAGTCAGTG+TGG | 0.669907 | 7.4:+9738043 | MS.gene22476:CDS |
| ATGATTGTAGAGTCAACCTG+TGG | 0.682094 | 7.4:+9738433 | MS.gene22476:intron |
| TGAATATTCCTGTTATCACG+CGG | 0.715299 | 7.4:-9736536 | None:intergenic |
| CGATGTGAGGAACACCGAGG+AGG | 0.716688 | 7.4:-9736619 | None:intergenic |
| TGGCGCGTGAGAATATGAGG+AGG | 0.729208 | 7.4:-9736513 | None:intergenic |
| TAGCGATGTGAGGAACACCG+AGG | 0.819027 | 7.4:-9736622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGGAAAAATAAAA+TGG | - | chr7.4:9736704-9736723 | None:intergenic | 10.0% |
| !!! | AATAATATTAAAACTTTTAG+TGG | - | chr7.4:9737450-9737469 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTGAATAAAAAA+AGG | - | chr7.4:9736717-9736736 | None:intergenic | 10.0% |
| !! | ATTAACAATCATATTGTTTA+AGG | - | chr7.4:9737325-9737344 | None:intergenic | 15.0% |
| !!! | GGACTTTTTATATTAATAAT+AGG | + | chr7.4:9737865-9737884 | MS.gene22476:intron | 15.0% |
| !! | ATAAAAAGTCCTTAAAAACT+AGG | - | chr7.4:9737856-9737875 | None:intergenic | 20.0% |
| !! | CCAAAGCATATAATAATAAA+AGG | - | chr7.4:9736753-9736772 | None:intergenic | 20.0% |
| !!! | CCTTTTATTATTATATGCTT+TGG | + | chr7.4:9736750-9736769 | MS.gene22476:intron | 20.0% |
| !!! | TTTTTGATAATACATAGCAA+TGG | + | chr7.4:9737483-9737502 | MS.gene22476:intron | 20.0% |
| ! | AAATGATGATTGACATTCTA+TGG | + | chr7.4:9737203-9737222 | MS.gene22476:intron | 25.0% |
| ! | CATGTAATAAGCTGTAATTA+TGG | + | chr7.4:9737069-9737088 | MS.gene22476:intron | 25.0% |
| ! | TAATTTCATCTGACACTAAT+TGG | - | chr7.4:9737694-9737713 | None:intergenic | 25.0% |
| ! | TTAACAATCAGAATTGTTGA+AGG | - | chr7.4:9737185-9737204 | None:intergenic | 25.0% |
| ! | TTTATGTGTCTTCAATACTT+TGG | + | chr7.4:9736986-9737005 | MS.gene22476:intron | 25.0% |
| !! | ATTATATGCTTTGGTTTAGT+TGG | + | chr7.4:9736759-9736778 | MS.gene22476:intron | 25.0% |
| !! | TGTATTATTTTCCATGAATC+AGG | + | chr7.4:9737937-9737956 | MS.gene22476:intron | 25.0% |
| !! | TTGTTATTGTTGTTGGTTAA+GGG | + | chr7.4:9738261-9738280 | MS.gene22476:intron | 25.0% |
| !!! | ACTATATTGATAGCGTAAAA+TGG | + | chr7.4:9736830-9736849 | MS.gene22476:intron | 25.0% |
| !!! | CTATATTGATAGCGTAAAAT+GGG | + | chr7.4:9736831-9736850 | MS.gene22476:intron | 25.0% |
| AACCTATGGCATCTTAATTA+TGG | + | chr7.4:9738290-9738309 | MS.gene22476:intron | 30.0% | |
| AATCTCTGATTCATGTTTCA+TGG | + | chr7.4:9737133-9737152 | MS.gene22476:intron | 30.0% | |
| ACCTATGGCATCTTAATTAT+GGG | + | chr7.4:9738291-9738310 | MS.gene22476:intron | 30.0% | |
| AGGAAAAATAAAATGGAACC+TGG | - | chr7.4:9736697-9736716 | None:intergenic | 30.0% | |
| ATGAATCAGGAAATATTGGA+AGG | + | chr7.4:9737950-9737969 | MS.gene22476:intron | 30.0% | |
| CTATCAGAAATCGTAAATCA+AGG | + | chr7.4:9737668-9737687 | MS.gene22476:CDS | 30.0% | |
| GCTTCGTATATACAATGAAT+TGG | + | chr7.4:9738210-9738229 | MS.gene22476:CDS | 30.0% | |
| GGAAAAATAAAATGGAACCT+GGG | - | chr7.4:9736696-9736715 | None:intergenic | 30.0% | |
| TGAATCAGGAAATATTGGAA+GGG | + | chr7.4:9737951-9737970 | MS.gene22476:intron | 30.0% | |
| TGATAACAGGAATATTCAGT+GGG | + | chr7.4:9736541-9736560 | MS.gene22476:CDS | 30.0% | |
| TTCCAATATTTCCTGATTCA+TGG | - | chr7.4:9737951-9737970 | None:intergenic | 30.0% | |
| TTCCATGAATCAGGAAATAT+TGG | + | chr7.4:9737946-9737965 | MS.gene22476:intron | 30.0% | |
| ! | ACTGTTGTTGTTATTGTTGT+TGG | + | chr7.4:9738254-9738273 | MS.gene22476:intron | 30.0% |
| ! | ATTGAAGATAGCATGGTTTT+TGG | + | chr7.4:9737562-9737581 | MS.gene22476:intron | 30.0% |
| ! | GTTGTTATTGTTGTTGGTTA+AGG | + | chr7.4:9738260-9738279 | MS.gene22476:intron | 30.0% |
| ! | TGTTATTGTTGTTGGTTAAG+GGG | + | chr7.4:9738262-9738281 | MS.gene22476:intron | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | + | chr7.4:9737005-9737024 | MS.gene22476:intron | 30.0% |
| !! | AATATTCAGTGGGTTTTCTT+AGG | + | chr7.4:9736551-9736570 | MS.gene22476:CDS | 30.0% |
| !!! | AAAATTTGTGCTTTTTCGAC+TGG | + | chr7.4:9736951-9736970 | MS.gene22476:intron | 30.0% |
| AAGTCCTTAAAAACTAGGAC+AGG | - | chr7.4:9737851-9737870 | None:intergenic | 35.0% | |
| ACAACAGTAACAGTAAGACA+AGG | - | chr7.4:9738242-9738261 | None:intergenic | 35.0% | |
| AGTCCTTAAAAACTAGGACA+GGG | - | chr7.4:9737850-9737869 | None:intergenic | 35.0% | |
| AGTGTGAATTGAAGATAGCA+TGG | + | chr7.4:9737555-9737574 | MS.gene22476:intron | 35.0% | |
| ATTAACATCAAGGGTGAGAA+TGG | + | chr7.4:9738088-9738107 | MS.gene22476:CDS | 35.0% | |
| ATTCTCACCCTTGATGTTAA+TGG | - | chr7.4:9738089-9738108 | None:intergenic | 35.0% | |
| CCTATGGCATCTTAATTATG+GGG | + | chr7.4:9738292-9738311 | MS.gene22476:intron | 35.0% | |
| CTATGGCATCTTAATTATGG+GGG | + | chr7.4:9738293-9738312 | MS.gene22476:intron | 35.0% | |
| GAATCAGGAAATATTGGAAG+GGG | + | chr7.4:9737952-9737971 | MS.gene22476:intron | 35.0% | |
| GAATCAGGTTTCATTCTTGA+TGG | + | chr7.4:9737761-9737780 | MS.gene22476:CDS | 35.0% | |
| GTGATAACAGGAATATTCAG+TGG | + | chr7.4:9736540-9736559 | MS.gene22476:CDS | 35.0% | |
| TCACACTCACACAAGAATTA+AGG | - | chr7.4:9737542-9737561 | None:intergenic | 35.0% | |
| TCATCAAAAAGCAGAATGCA+TGG | - | chr7.4:9737350-9737369 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+TGG | + | chr7.4:9737023-9737042 | MS.gene22476:intron | 35.0% | |
| TGAATATTCCTGTTATCACG+CGG | - | chr7.4:9736539-9736558 | None:intergenic | 35.0% | |
| TTAACATCAAGGGTGAGAAT+GGG | + | chr7.4:9738089-9738108 | MS.gene22476:CDS | 35.0% | |
| TTCATGTTTCATGGTTCAAC+TGG | + | chr7.4:9737142-9737161 | MS.gene22476:intron | 35.0% | |
| TTCCATCGAAAAATGACACA+AGG | + | chr7.4:9737909-9737928 | MS.gene22476:intron | 35.0% | |
| ! | CTTGTCACTTATCAGTATGT+TGG | + | chr7.4:9737106-9737125 | MS.gene22476:intron | 35.0% |
| ! | TTAAGAGCATGCAACAACTT+TGG | - | chr7.4:9738527-9738546 | None:intergenic | 35.0% |
| !! | GCGTAAAATGGGTTATTCTA+TGG | + | chr7.4:9736842-9736861 | MS.gene22476:intron | 35.0% |
| !! | TTTTTCGACTGGCTATGTTT+TGG | + | chr7.4:9736962-9736981 | MS.gene22476:intron | 35.0% |
| !!! | CAAACTCCATTAGTTTTCCT+CGG | - | chr7.4:9738475-9738494 | None:intergenic | 35.0% |
| !!! | TTCCTTGTGTCATTTTTCGA+TGG | - | chr7.4:9737914-9737933 | None:intergenic | 35.0% |
| AAAATGGAACCTGGGAAGAA+AGG | - | chr7.4:9736688-9736707 | None:intergenic | 40.0% | |
| AAATGGAACCTGGGAAGAAA+GGG | - | chr7.4:9736687-9736706 | None:intergenic | 40.0% | |
| AACAACTTTGGCCAAGATTC+CGG | - | chr7.4:9738515-9738534 | None:intergenic | 40.0% | |
| ATGATTGTAGAGTCAACCTG+TGG | + | chr7.4:9738433-9738452 | MS.gene22476:intron | 40.0% | |
| CCCCATAATTAAGATGCCAT+AGG | - | chr7.4:9738295-9738314 | None:intergenic | 40.0% | |
| CTGAACCAGTAGTCAAAGAA+AGG | + | chr7.4:9738188-9738207 | MS.gene22476:CDS | 40.0% | |
| GTCCTTAAAAACTAGGACAG+GGG | - | chr7.4:9737849-9737868 | None:intergenic | 40.0% | |
| GTTGCCTCCATTAACATCAA+GGG | + | chr7.4:9738079-9738098 | MS.gene22476:CDS | 40.0% | |
| TGTTGCCTCCATTAACATCA+AGG | + | chr7.4:9738078-9738097 | MS.gene22476:CDS | 40.0% | |
| ! | AATGAAACCTGATTCGCCTT+TGG | - | chr7.4:9737756-9737775 | None:intergenic | 40.0% |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr7.4:9737791-9737810 | None:intergenic | 40.0% |
| !! | TCATGGTTCAACTGGTTTGA+TGG | + | chr7.4:9737150-9737169 | MS.gene22476:intron | 40.0% |
| !!! | CTTTTGTCACTTGTTGTCGT+TGG | + | chr7.4:9737231-9737250 | MS.gene22476:intron | 40.0% |
| AAAAACTAGGACAGGGGTGA+GGG | - | chr7.4:9737843-9737862 | None:intergenic | 45.0% | |
| AATGGAACCTGGGAAGAAAG+GGG | - | chr7.4:9736686-9736705 | None:intergenic | 45.0% | |
| ACAACTTTGGCCAAGATTCC+GGG | - | chr7.4:9738514-9738533 | None:intergenic | 45.0% | |
| AGCTTGGACATACAATGCTC+AGG | - | chr7.4:9738148-9738167 | None:intergenic | 45.0% | |
| ATATTCCTGTTATCACGCGG+TGG | - | chr7.4:9736536-9736555 | None:intergenic | 45.0% | |
| ATTGACGCAAATCACGCAGA+TGG | - | chr7.4:9736914-9736933 | None:intergenic | 45.0% | |
| ATTGTAGAGTCAACCTGTGG+AGG | + | chr7.4:9738436-9738455 | MS.gene22476:intron | 45.0% | |
| CGAAGCCTTTCTTTGACTAC+TGG | - | chr7.4:9738196-9738215 | None:intergenic | 45.0% | |
| CGCTAAGGGATAAAAGGATG+TGG | - | chr7.4:9736480-9736499 | None:intergenic | 45.0% | |
| CTAATGGAGTTTGAGCTTCC+TGG | + | chr7.4:9738482-9738501 | MS.gene22476:CDS | 45.0% | |
| CTCACCCTTGATGTTAATGG+AGG | - | chr7.4:9738086-9738105 | None:intergenic | 45.0% | |
| TAAAAACTAGGACAGGGGTG+AGG | - | chr7.4:9737844-9737863 | None:intergenic | 45.0% | |
| TTGACGCAAATCACGCAGAT+GGG | - | chr7.4:9736913-9736932 | None:intergenic | 45.0% | |
| TTGCAAGCAGTGCTTCTTCT+CGG | - | chr7.4:9738012-9738031 | None:intergenic | 45.0% | |
| TTGGACATACAATGCTCAGG+AGG | - | chr7.4:9738145-9738164 | None:intergenic | 45.0% | |
| TTGTAGAGTCAACCTGTGGA+GGG | + | chr7.4:9738437-9738456 | MS.gene22476:intron | 45.0% | |
| !! | CACCCCTGTCCTAGTTTTTA+AGG | + | chr7.4:9737844-9737863 | MS.gene22476:intron | 45.0% |
| !! | GAGCTTGTTGTCTAAGAGAC+TGG | + | chr7.4:9737718-9737737 | MS.gene22476:CDS | 45.0% |
| !!! | CCATTAGTTTTCCTCGGCTA+CGG | - | chr7.4:9738469-9738488 | None:intergenic | 45.0% |
| !!! | TAATATTATTAATTTTTTTG+AGG | + | chr7.4:9737460-9737479 | MS.gene22476:intron | 5.0% |
| AAAACTAGGACAGGGGTGAG+GGG | - | chr7.4:9737842-9737861 | None:intergenic | 50.0% | |
| ACAATGCTCAGGAGGAAGCA+GGG | - | chr7.4:9738137-9738156 | None:intergenic | 50.0% | |
| AGAACTTGCAGTCAGTGTGG+AGG | + | chr7.4:9738046-9738065 | MS.gene22476:CDS | 50.0% | |
| AGGAGAACTTGCAGTCAGTG+TGG | + | chr7.4:9738043-9738062 | MS.gene22476:CDS | 50.0% | |
| AGGATGTGGTGCGTTTAACG+AGG | - | chr7.4:9736466-9736485 | None:intergenic | 50.0% | |
| AGGGGAGCCATACTAATTCC+AGG | - | chr7.4:9738118-9738137 | None:intergenic | 50.0% | |
| ATCCGAACGAGTGATGAGCT+TGG | - | chr7.4:9738164-9738183 | None:intergenic | 50.0% | |
| ATGGAACCTGGGAAGAAAGG+GGG | - | chr7.4:9736685-9736704 | None:intergenic | 50.0% | |
| ATGGAGTTTGAGCTTCCTGG+AGG | + | chr7.4:9738485-9738504 | MS.gene22476:CDS | 50.0% | |
| ATGTGGTGCGTTTAACGAGG+CGG | - | chr7.4:9736463-9736482 | None:intergenic | 50.0% | |
| CCGTAGCCGAGGAAAACTAA+TGG | + | chr7.4:9738466-9738485 | MS.gene22476:CDS | 50.0% | |
| CTACGGTAAAATCCCTCCAC+AGG | - | chr7.4:9738452-9738471 | None:intergenic | 50.0% | |
| CTCATGGCGAACAAGATCTC+CGG | - | chr7.4:9736648-9736667 | None:intergenic | 50.0% | |
| GCACTGCTTGCAAAATGCCT+CGG | + | chr7.4:9738019-9738038 | MS.gene22476:CDS | 50.0% | |
| GGGGAGCCATACTAATTCCA+GGG | - | chr7.4:9738117-9738136 | None:intergenic | 50.0% | |
| GTAGGTACCTTTACCAACGC+CGG | - | chr7.4:9736582-9736601 | None:intergenic | 50.0% | |
| GTCCAAGCTCATCACTCGTT+CGG | + | chr7.4:9738159-9738178 | MS.gene22476:CDS | 50.0% | |
| GTTAAGGGGACGTGAACCTA+TGG | + | chr7.4:9738276-9738295 | MS.gene22476:intron | 50.0% | |
| TACAATGCTCAGGAGGAAGC+AGG | - | chr7.4:9738138-9738157 | None:intergenic | 50.0% | |
| TAGGTACCTTTACCAACGCC+GGG | - | chr7.4:9736581-9736600 | None:intergenic | 50.0% | |
| TCCACGCGCTAAGGGATAAA+AGG | - | chr7.4:9736486-9736505 | None:intergenic | 50.0% | |
| TGCTTGCAAAATGCCTCGGT+AGG | + | chr7.4:9738023-9738042 | MS.gene22476:CDS | 50.0% | |
| TGGAGTTTGAGCTTCCTGGA+GGG | + | chr7.4:9738486-9738505 | MS.gene22476:CDS | 50.0% | |
| TGGGTGCCCTGGAATTAGTA+TGG | + | chr7.4:9738108-9738127 | MS.gene22476:CDS | 50.0% | |
| ! | AGGGGTGACAGACATTGACT+TGG | + | chr7.4:9737970-9737989 | MS.gene22476:CDS | 50.0% |
| ! | TCCTTTTATCCCTTAGCGCG+TGG | + | chr7.4:9736482-9736501 | MS.gene22476:CDS | 50.0% |
| ! | TGGGTTTTCTTAGGCTGTCC+CGG | + | chr7.4:9736560-9736579 | MS.gene22476:CDS | 50.0% |
| ! | TTGTCTAAGAGACTGGCCGA+AGG | + | chr7.4:9737725-9737744 | MS.gene22476:CDS | 50.0% |
| !! | GGTGACAGACATTGACTTGG+TGG | + | chr7.4:9737973-9737992 | MS.gene22476:CDS | 50.0% |
| !! | TTCGCCTTTGGCTTGTCCTT+CGG | - | chr7.4:9737744-9737763 | None:intergenic | 50.0% |
| AGATCTCCGGTAGCGATGTG+AGG | - | chr7.4:9736635-9736654 | None:intergenic | 55.0% | |
| CAATGCTCAGGAGGAAGCAG+GGG | - | chr7.4:9738136-9738155 | None:intergenic | 55.0% | |
| CGCCATGAGCTTTCCTCCAA+TGG | + | chr7.4:9736659-9736678 | MS.gene22476:CDS | 55.0% | |
| CGCGTGAGAATATGAGGAGG+AGG | - | chr7.4:9736513-9736532 | None:intergenic | 55.0% | |
| GACTGCAAGTTCTCCTACCG+AGG | - | chr7.4:9738039-9738058 | None:intergenic | 55.0% | |
| GAGGAGAATCCACGCGCTAA+GGG | - | chr7.4:9736494-9736513 | None:intergenic | 55.0% | |
| GGACAAGCCAAAGGCGAATC+AGG | + | chr7.4:9737746-9737765 | MS.gene22476:CDS | 55.0% | |
| GGCCATTGGAGGAAAGCTCA+TGG | - | chr7.4:9736664-9736683 | None:intergenic | 55.0% | |
| GGTGTTCCTCACATCGCTAC+CGG | + | chr7.4:9736626-9736645 | MS.gene22476:CDS | 55.0% | |
| TAGCGATGTGAGGAACACCG+AGG | - | chr7.4:9736625-9736644 | None:intergenic | 55.0% | |
| TGGCGCGTGAGAATATGAGG+AGG | - | chr7.4:9736516-9736535 | None:intergenic | 55.0% | |
| TGTGGTGCGTTTAACGAGGC+GGG | - | chr7.4:9736462-9736481 | None:intergenic | 55.0% | |
| ! | GAGGGATTTTACCGTAGCCG+AGG | + | chr7.4:9738455-9738474 | MS.gene22476:CDS | 55.0% |
| !! | GCGTTTAACGAGGCGGGTTA+TGG | - | chr7.4:9736456-9736475 | None:intergenic | 55.0% |
| AAGGGTGAGAATGGGTGCCC+TGG | + | chr7.4:9738097-9738116 | MS.gene22476:CDS | 60.0% | |
| CAAGATTCCGGGATCCCTCC+AGG | - | chr7.4:9738503-9738522 | None:intergenic | 60.0% | |
| CAATGGCCCCCTTTCTTCCC+AGG | + | chr7.4:9736676-9736695 | MS.gene22476:CDS | 60.0% | |
| CGATGTGAGGAACACCGAGG+AGG | - | chr7.4:9736622-9736641 | None:intergenic | 60.0% | |
| CGGTGGCGCGTGAGAATATG+AGG | - | chr7.4:9736519-9736538 | None:intergenic | 60.0% | |
| CTGGAGGGATCCCGGAATCT+TGG | + | chr7.4:9738501-9738520 | MS.gene22476:CDS | 60.0% | |
| CTGGCCGAAGGACAAGCCAA+AGG | + | chr7.4:9737737-9737756 | MS.gene22476:CDS | 60.0% | |
| CTGGGAAGAAAGGGGGCCAT+TGG | - | chr7.4:9736678-9736697 | None:intergenic | 60.0% | |
| GAACACCGAGGAGGTTGCAG+AGG | - | chr7.4:9736613-9736632 | None:intergenic | 60.0% | |
| GGAAGAAAGGGGGCCATTGG+AGG | - | chr7.4:9736675-9736694 | None:intergenic | 60.0% | |
| GGAGGAGAATCCACGCGCTA+AGG | - | chr7.4:9736495-9736514 | None:intergenic | 60.0% | |
| TGAGCTTCCTGGAGGGATCC+CGG | + | chr7.4:9738493-9738512 | MS.gene22476:CDS | 60.0% | |
| TTCTTAGGCTGTCCCGGCGT+TGG | + | chr7.4:9736566-9736585 | MS.gene22476:CDS | 60.0% | |
| ACGCGCCACCGCGTGATAAC+AGG | + | chr7.4:9736528-9736547 | MS.gene22476:CDS | 65.0% | |
| AGCCGCCTCTGCAACCTCCT+CGG | + | chr7.4:9736605-9736624 | MS.gene22476:CDS | 65.0% | |
| CACCGAGGAGGTTGCAGAGG+CGG | - | chr7.4:9736610-9736629 | None:intergenic | 65.0% | |
| !! | GGCTGTCCCGGCGTTGGTAA+AGG | + | chr7.4:9736572-9736591 | MS.gene22476:CDS | 65.0% |
| GAGGAGGTTGCAGAGGCGGC+TGG | - | chr7.4:9736606-9736625 | None:intergenic | 70.0% | |
| GTTGCAGAGGCGGCTGGCGT+AGG | - | chr7.4:9736600-9736619 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 9736446 | 9738583 | 9736446 | ID=MS.gene22476 |
| chr7.4 | mRNA | 9736446 | 9738583 | 9736446 | ID=MS.gene22476.t1;Parent=MS.gene22476 |
| chr7.4 | exon | 9736446 | 9736697 | 9736446 | ID=MS.gene22476.t1.exon1;Parent=MS.gene22476.t1 |
| chr7.4 | CDS | 9736446 | 9736697 | 9736446 | ID=cds.MS.gene22476.t1;Parent=MS.gene22476.t1 |
| chr7.4 | exon | 9737668 | 9737808 | 9737668 | ID=MS.gene22476.t1.exon2;Parent=MS.gene22476.t1 |
| chr7.4 | CDS | 9737668 | 9737808 | 9737668 | ID=cds.MS.gene22476.t1;Parent=MS.gene22476.t1 |
| chr7.4 | exon | 9737959 | 9738231 | 9737959 | ID=MS.gene22476.t1.exon3;Parent=MS.gene22476.t1 |
| chr7.4 | CDS | 9737959 | 9738231 | 9737959 | ID=cds.MS.gene22476.t1;Parent=MS.gene22476.t1 |
| chr7.4 | exon | 9738443 | 9738583 | 9738443 | ID=MS.gene22476.t1.exon4;Parent=MS.gene22476.t1 |
| chr7.4 | CDS | 9738443 | 9738583 | 9738443 | ID=cds.MS.gene22476.t1;Parent=MS.gene22476.t1 |
| Gene Sequence |
| Protein sequence |
