Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22534.t1 | AFK49645.1 | 98.3 | 235 | 4 | 0 | 1 | 235 | 1 | 235 | 7.00E-126 | 459.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22534.t1 | Q93ZH2 | 47.0 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 4.7e-30 | 132.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22534.t1 | I3TAV3 | 98.3 | 235 | 4 | 0 | 1 | 235 | 1 | 235 | 5.1e-126 | 459.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene22534.t1 | TF | NF-YA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051190 | MS.gene22534 | 0.945918 | 1.24E-104 | -1.69E-46 |
MS.gene054291 | MS.gene22534 | -0.802098 | 6.59E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22534.t1 | MTR_2g041090 | 98.298 | 235 | 4 | 0 | 1 | 235 | 1 | 235 | 1.60e-175 | 481 |
MS.gene22534.t1 | MTR_8g019540 | 47.423 | 194 | 91 | 6 | 11 | 204 | 103 | 285 | 4.95e-45 | 153 |
MS.gene22534.t1 | MTR_2g099490 | 50.331 | 151 | 61 | 4 | 6 | 145 | 108 | 255 | 9.70e-39 | 137 |
MS.gene22534.t1 | MTR_2g099490 | 52.143 | 140 | 59 | 3 | 6 | 145 | 108 | 239 | 1.36e-37 | 134 |
MS.gene22534.t1 | MTR_3g061510 | 53.731 | 134 | 45 | 5 | 23 | 156 | 123 | 239 | 4.04e-36 | 130 |
MS.gene22534.t1 | MTR_3g061510 | 53.731 | 134 | 45 | 5 | 23 | 156 | 143 | 259 | 5.25e-36 | 130 |
MS.gene22534.t1 | MTR_8g037270 | 54.472 | 123 | 49 | 3 | 33 | 153 | 114 | 231 | 3.07e-35 | 127 |
MS.gene22534.t1 | MTR_2g030170 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 2.22e-30 | 112 |
MS.gene22534.t1 | MTR_2g030170 | 53.774 | 106 | 46 | 2 | 59 | 162 | 128 | 232 | 5.49e-30 | 112 |
MS.gene22534.t1 | MTR_1g056530 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.52e-29 | 113 |
MS.gene22534.t1 | MTR_7g106450 | 52.500 | 120 | 39 | 5 | 32 | 150 | 134 | 236 | 6.34e-29 | 111 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22534.t1 | AT1G72830 | 47.027 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 2.15e-41 | 144 |
MS.gene22534.t1 | AT1G72830 | 46.774 | 186 | 90 | 5 | 26 | 206 | 129 | 310 | 1.29e-39 | 139 |
MS.gene22534.t1 | AT1G54160 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.48e-38 | 136 |
MS.gene22534.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.75e-38 | 136 |
MS.gene22534.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.75e-38 | 136 |
MS.gene22534.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.75e-38 | 136 |
MS.gene22534.t1 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.75e-38 | 136 |
MS.gene22534.t1 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.59e-35 | 127 |
MS.gene22534.t1 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.59e-35 | 127 |
MS.gene22534.t1 | AT1G30500 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 6.60e-34 | 120 |
MS.gene22534.t1 | AT1G30500 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 7.57e-34 | 120 |
MS.gene22534.t1 | AT2G34720 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.18e-33 | 120 |
MS.gene22534.t1 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 2.98e-33 | 118 |
MS.gene22534.t1 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 2.98e-33 | 118 |
MS.gene22534.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.60e-32 | 119 |
MS.gene22534.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.60e-32 | 119 |
MS.gene22534.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.92e-32 | 119 |
MS.gene22534.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.92e-32 | 119 |
MS.gene22534.t1 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.92e-32 | 119 |
MS.gene22534.t1 | AT3G20910 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.21e-30 | 115 |
MS.gene22534.t1 | AT1G72830 | 41.622 | 185 | 75 | 5 | 26 | 206 | 129 | 284 | 1.13e-27 | 107 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.15e-25 | 97.4 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.15e-25 | 97.4 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.33e-24 | 97.4 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene22534.t1 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.50e-24 | 98.6 |
MS.gene22534.t1 | AT3G05690 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.35e-24 | 97.4 |
MS.gene22534.t1 | AT3G05690 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 9.91e-24 | 97.4 |
Find 48 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGTCACTGGTTCACATTC+TGG | 0.240648 | 2.2:+46860019 | MS.gene22534:CDS |
ACTAATGAACCAGCGAAAAT+TGG | 0.269126 | 2.2:-46859224 | None:intergenic |
CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2.2:+46859944 | MS.gene22534:CDS |
GCGAAAATTGGATCACTATA+AGG | 0.333039 | 2.2:-46859212 | None:intergenic |
GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2.2:-46859067 | None:intergenic |
CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2.2:-46860155 | None:intergenic |
TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2.2:+46859950 | MS.gene22534:CDS |
TCAAATGTTGCCTCAAATGA+TGG | 0.414655 | 2.2:+46859433 | MS.gene22534:CDS |
CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2.2:-46859937 | None:intergenic |
GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2.2:-46859976 | None:intergenic |
TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2.2:-46859917 | None:intergenic |
TGCAGTGGAGGACTCACATT+TGG | 0.450885 | 2.2:+46860235 | MS.gene22534:CDS |
ATCATTTGAGGCAACATTTG+AGG | 0.451884 | 2.2:-46859431 | None:intergenic |
CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2.2:+46859482 | MS.gene22534:CDS |
ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2.2:-46859990 | None:intergenic |
CAGCCAGAGCACATGTTTCT+CGG | 0.463872 | 2.2:+46860178 | MS.gene22534:CDS |
GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2.2:-46860104 | None:intergenic |
CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2.2:+46859483 | MS.gene22534:CDS |
AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2.2:+46860266 | MS.gene22534:CDS |
CCCTGACAACAATTATCAAA+AGG | 0.501288 | 2.2:+46860042 | MS.gene22534:CDS |
TCTCGGAAACTCTCCAAACA+TGG | 0.515279 | 2.2:+46860195 | MS.gene22534:CDS |
TTTCCGAGAAACATGTGCTC+TGG | 0.517885 | 2.2:-46860181 | None:intergenic |
GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2.2:-46859046 | None:intergenic |
AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2.2:+46860060 | MS.gene22534:CDS |
CAAATGTTGCCTCAAATGAT+GGG | 0.554653 | 2.2:+46859434 | MS.gene22534:CDS |
TCTAATGCAGAATTTGTCAC+TGG | 0.556177 | 2.2:+46860007 | MS.gene22534:CDS |
AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2.2:+46859093 | MS.gene22534:CDS |
TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2.2:-46860070 | None:intergenic |
CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2.2:-46860122 | None:intergenic |
GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2.2:-46859443 | None:intergenic |
CTCGGAAACTCTCCAAACAT+GGG | 0.568497 | 2.2:+46860196 | MS.gene22534:CDS |
AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2.2:-46859465 | None:intergenic |
AGTGGAGGACTCACATTTGG+CGG | 0.581240 | 2.2:+46860238 | MS.gene22534:CDS |
GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2.2:+46860220 | MS.gene22534:CDS |
CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2.2:-46859482 | None:intergenic |
CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2.2:+46860122 | MS.gene22534:CDS |
AATACCATGGTATACTGAGA+AGG | 0.610675 | 2.2:+46859528 | MS.gene22534:CDS |
AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2.2:-46859074 | None:intergenic |
GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2.2:+46860223 | MS.gene22534:CDS |
TCGGAAACTCTCCAAACATG+GGG | 0.623338 | 2.2:+46860197 | MS.gene22534:CDS |
GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2.2:+46859515 | MS.gene22534:CDS |
GGAAACTCTCCAAACATGGG+GGG | 0.635172 | 2.2:+46860199 | MS.gene22534:CDS |
AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2.2:+46859953 | MS.gene22534:CDS |
CGGAAACTCTCCAAACATGG+GGG | 0.673768 | 2.2:+46860198 | MS.gene22534:CDS |
GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2.2:-46859532 | None:intergenic |
GTGAGTCCTCCACTGCATTG+TGG | 0.681382 | 2.2:-46860229 | None:intergenic |
AAAACACTTACAACAGCATG+CGG | 0.692250 | 2.2:-46859257 | None:intergenic |
ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2.2:+46859553 | MS.gene22534:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAAACTATTCAATAAAAC+AGG | - | chr2.2:46859877-46859896 | None:intergenic | 20.0% |
! | AAAAAGTAAAGTTCAAAGCA+TGG | - | chr2.2:46859615-46859634 | None:intergenic | 25.0% |
! | CAAAATGTCATGTTATTACA+TGG | + | chr2.2:46859821-46859840 | MS.gene22534:intron | 25.0% |
! | GTATGTAAAACTTCTGTATT+TGG | + | chr2.2:46859115-46859134 | MS.gene22534:intron | 25.0% |
!! | GATTTTATATAACCATCCAA+GGG | + | chr2.2:46859741-46859760 | MS.gene22534:intron | 25.0% |
!! | TGATTTTATATAACCATCCA+AGG | + | chr2.2:46859740-46859759 | MS.gene22534:intron | 25.0% |
!!! | GAACTTTACTTTTTTCATTC+AGG | + | chr2.2:46859621-46859640 | MS.gene22534:intron | 25.0% |
!!! | GGTGAAATTGTTATTTGAAA+GGG | + | chr2.2:46859842-46859861 | MS.gene22534:intron | 25.0% |
!!! | TGGTGAAATTGTTATTTGAA+AGG | + | chr2.2:46859841-46859860 | MS.gene22534:intron | 25.0% |
!!! | TGTTTTGCATTGACATAAAT+GGG | - | chr2.2:46859509-46859528 | None:intergenic | 25.0% |
!!! | TTGTTTTGCATTGACATAAA+TGG | - | chr2.2:46859510-46859529 | None:intergenic | 25.0% |
AGTTGATCATAATCACTCAA+TGG | + | chr2.2:46859093-46859112 | MS.gene22534:CDS | 30.0% | |
TTTCTCGTTACAATCTCAAA+AGG | - | chr2.2:46859716-46859735 | None:intergenic | 30.0% | |
! | CTACTAGTTTATATGCCATA+AGG | - | chr2.2:46859648-46859667 | None:intergenic | 30.0% |
!! | CCTTTTGATAATTGTTGTCA+GGG | - | chr2.2:46860045-46860064 | None:intergenic | 30.0% |
!! | TCCTTTTGATAATTGTTGTC+AGG | - | chr2.2:46860046-46860065 | None:intergenic | 30.0% |
!!! | TATGTTATCTCTGGTTTTTG+AGG | - | chr2.2:46860098-46860117 | None:intergenic | 30.0% |
!!! | TTTTTTCATTCAGGACCTTA+TGG | + | chr2.2:46859630-46859649 | MS.gene22534:intron | 30.0% |
AAAACACTTACAACAGCATG+CGG | - | chr2.2:46859260-46859279 | None:intergenic | 35.0% | |
AACTTGTGAGCAATTGAACT+CGG | - | chr2.2:46859077-46859096 | None:intergenic | 35.0% | |
AATACCATGGTATACTGAGA+AGG | + | chr2.2:46859528-46859547 | MS.gene22534:CDS | 35.0% | |
AATTCTACCACTTGTCATCA+CGG | - | chr2.2:46859782-46859801 | None:intergenic | 35.0% | |
ACTAATGAACCAGCGAAAAT+TGG | - | chr2.2:46859227-46859246 | None:intergenic | 35.0% | |
CAAATGTTGCCTCAAATGAT+GGG | + | chr2.2:46859434-46859453 | MS.gene22534:CDS | 35.0% | |
CCCTGACAACAATTATCAAA+AGG | + | chr2.2:46860042-46860061 | MS.gene22534:CDS | 35.0% | |
CTCTATTCAAAGCATGTTTG+TGG | - | chr2.2:46859940-46859959 | None:intergenic | 35.0% | |
GATGGAAGATATGTTATCTC+TGG | - | chr2.2:46860107-46860126 | None:intergenic | 35.0% | |
GCGAAAATTGGATCACTATA+AGG | - | chr2.2:46859215-46859234 | None:intergenic | 35.0% | |
GGATGATTCAAAGAGAGAAA+AGG | - | chr2.2:46859049-46859068 | None:intergenic | 35.0% | |
GTCAATGCAAAACAATACCA+TGG | + | chr2.2:46859515-46859534 | MS.gene22534:CDS | 35.0% | |
TCAAATGTTGCCTCAAATGA+TGG | + | chr2.2:46859433-46859452 | MS.gene22534:CDS | 35.0% | |
TCTAATGCAGAATTTGTCAC+TGG | + | chr2.2:46860007-46860026 | MS.gene22534:CDS | 35.0% | |
TTGAATAGAGTTAGAGGATC+TGG | + | chr2.2:46859950-46859969 | MS.gene22534:CDS | 35.0% | |
! | ATCATTTGAGGCAACATTTG+AGG | - | chr2.2:46859434-46859453 | None:intergenic | 35.0% |
! | ATCTCAAAAGGTAAGAGTGT+AGG | - | chr2.2:46859704-46859723 | None:intergenic | 35.0% |
! | ATTAGACTCTGAAAGCTGTT+TGG | - | chr2.2:46859993-46860012 | None:intergenic | 35.0% |
! | CATGCTTTGAATAGAGTTAG+AGG | + | chr2.2:46859944-46859963 | MS.gene22534:CDS | 35.0% |
! | TATAGTGATCCAATTTTCGC+TGG | + | chr2.2:46859215-46859234 | MS.gene22534:CDS | 35.0% |
AAAGGAAGATCCTTCAGAGA+TGG | + | chr2.2:46860060-46860079 | MS.gene22534:CDS | 40.0% | |
AATAGAGTTAGAGGATCTGG+TGG | + | chr2.2:46859953-46859972 | MS.gene22534:CDS | 40.0% | |
ATTCTACCACTTGTCATCAC+GGG | - | chr2.2:46859781-46859800 | None:intergenic | 40.0% | |
CACTTGATCTTGCACAAGAT+GGG | + | chr2.2:46859483-46859502 | MS.gene22534:CDS | 40.0% | |
CCTAAAACTGAAACTGTTGC+TGG | - | chr2.2:46860158-46860177 | None:intergenic | 40.0% | |
GATGCTAATCCCATCATTTG+AGG | - | chr2.2:46859446-46859465 | None:intergenic | 40.0% | |
TGATGACTTTCCATCTCTGA+AGG | - | chr2.2:46860073-46860092 | None:intergenic | 40.0% | |
! | AAGTGGTAATGCAACTCTAG+TGG | - | chr2.2:46859468-46859487 | None:intergenic | 40.0% |
! | AGTTATTGTCGTCCGTTTTC+AGG | + | chr2.2:46859169-46859188 | MS.gene22534:intron | 40.0% |
! | CCAGCAACAGTTTCAGTTTT+AGG | + | chr2.2:46860155-46860174 | MS.gene22534:CDS | 40.0% |
! | GTAGCAAAGTTTTTCATGCG+TGG | + | chr2.2:46859664-46859683 | MS.gene22534:intron | 40.0% |
!! | GCTGTTTGGTGCTTAGAAAT+CGG | - | chr2.2:46859979-46859998 | None:intergenic | 40.0% |
!! | TTTGTCACTGGTTCACATTC+TGG | + | chr2.2:46860019-46860038 | MS.gene22534:CDS | 40.0% |
ACAATCACGAGCTAAGCTTG+AGG | + | chr2.2:46859553-46859572 | MS.gene22534:CDS | 45.0% | |
CATGAGTCTGAGCCTGAAAA+CGG | - | chr2.2:46859184-46859203 | None:intergenic | 45.0% | |
CCACTTGATCTTGCACAAGA+TGG | + | chr2.2:46859482-46859501 | MS.gene22534:CDS | 45.0% | |
CCATCACAAGTTGTTCCGAT+CGG | + | chr2.2:46860122-46860141 | MS.gene22534:CDS | 45.0% | |
CCATCTTGTGCAAGATCAAG+TGG | - | chr2.2:46859485-46859504 | None:intergenic | 45.0% | |
CTCGGAAACTCTCCAAACAT+GGG | + | chr2.2:46860196-46860215 | MS.gene22534:CDS | 45.0% | |
GAGCAATTGAACTCGGTATC+AGG | - | chr2.2:46859070-46859089 | None:intergenic | 45.0% | |
GCTGGAAAAACATGTCCGAT+CGG | - | chr2.2:46860140-46860159 | None:intergenic | 45.0% | |
TAACCATCCAAGGGTGAACA+AGG | + | chr2.2:46859750-46859769 | MS.gene22534:intron | 45.0% | |
TCGGAAACTCTCCAAACATG+GGG | + | chr2.2:46860197-46860216 | MS.gene22534:CDS | 45.0% | |
TCTCGGAAACTCTCCAAACA+TGG | + | chr2.2:46860195-46860214 | MS.gene22534:CDS | 45.0% | |
TGGCGAGATTCGTGAAGATA+TGG | - | chr2.2:46859920-46859939 | None:intergenic | 45.0% | |
TTTCCGAGAAACATGTGCTC+TGG | - | chr2.2:46860184-46860203 | None:intergenic | 45.0% | |
AGTGGAGGACTCACATTTGG+CGG | + | chr2.2:46860238-46860257 | MS.gene22534:CDS | 50.0% | |
CAGCCAGAGCACATGTTTCT+CGG | + | chr2.2:46860178-46860197 | MS.gene22534:CDS | 50.0% | |
CCGATCGGAACAACTTGTGA+TGG | - | chr2.2:46860125-46860144 | None:intergenic | 50.0% | |
CGGAAACTCTCCAAACATGG+GGG | + | chr2.2:46860198-46860217 | MS.gene22534:CDS | 50.0% | |
GAACCTTGTTCACCCTTGGA+TGG | - | chr2.2:46859756-46859775 | None:intergenic | 50.0% | |
GGAAACTCTCCAAACATGGG+GGG | + | chr2.2:46860199-46860218 | MS.gene22534:CDS | 50.0% | |
GTCGCCTTCTCAGTATACCA+TGG | - | chr2.2:46859535-46859554 | None:intergenic | 50.0% | |
TGCAGTGGAGGACTCACATT+TGG | + | chr2.2:46860235-46860254 | MS.gene22534:CDS | 50.0% | |
AACTCTCCAAACATGGGGGG+AGG | + | chr2.2:46860202-46860221 | MS.gene22534:CDS | 55.0% | |
AGCAACGCGCTTCTGTTGTC+CGG | + | chr2.2:46860266-46860285 | MS.gene22534:CDS | 55.0% | |
CTACCACTTGTCATCACGGG+AGG | - | chr2.2:46859778-46859797 | None:intergenic | 55.0% | |
GGAGGAACCTTGTTCACCCT+TGG | - | chr2.2:46859760-46859779 | None:intergenic | 55.0% | |
GTGAGTCCTCCACTGCATTG+TGG | - | chr2.2:46860232-46860251 | None:intergenic | 55.0% | |
GTTCCTCCCGTGATGACAAG+TGG | + | chr2.2:46859772-46859791 | MS.gene22534:intron | 55.0% | |
! | GGAGCACCACAATGCAGTGG+AGG | + | chr2.2:46860223-46860242 | MS.gene22534:CDS | 60.0% |
!! | GGAGGAGCACCACAATGCAG+TGG | + | chr2.2:46860220-46860239 | MS.gene22534:CDS | 60.0% |
GGTGCTCCTCCCCCCATGTT+TGG | - | chr2.2:46860211-46860230 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 46859040 | 46860291 | 46859040 | ID=MS.gene22534 |
chr2.2 | mRNA | 46859040 | 46860291 | 46859040 | ID=MS.gene22534.t1;Parent=MS.gene22534 |
chr2.2 | exon | 46859040 | 46859114 | 46859040 | ID=MS.gene22534.t1.exon1;Parent=MS.gene22534.t1 |
chr2.2 | CDS | 46859040 | 46859114 | 46859040 | ID=cds.MS.gene22534.t1;Parent=MS.gene22534.t1 |
chr2.2 | exon | 46859191 | 46859268 | 46859191 | ID=MS.gene22534.t1.exon2;Parent=MS.gene22534.t1 |
chr2.2 | CDS | 46859191 | 46859268 | 46859191 | ID=cds.MS.gene22534.t1;Parent=MS.gene22534.t1 |
chr2.2 | exon | 46859425 | 46859604 | 46859425 | ID=MS.gene22534.t1.exon3;Parent=MS.gene22534.t1 |
chr2.2 | CDS | 46859425 | 46859604 | 46859425 | ID=cds.MS.gene22534.t1;Parent=MS.gene22534.t1 |
chr2.2 | exon | 46859917 | 46860291 | 46859917 | ID=MS.gene22534.t1.exon4;Parent=MS.gene22534.t1 |
chr2.2 | CDS | 46859917 | 46860291 | 46859917 | ID=cds.MS.gene22534.t1;Parent=MS.gene22534.t1 |
Gene Sequence |
Protein sequence |