AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22564

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22564.t1 MTR_5g011580 97.183 426 12 0 1 426 1 426 0.0 864
MS.gene22564.t1 MTR_4g101950 76.526 426 100 0 1 426 1 426 0.0 697
MS.gene22564.t1 MTR_7g022470 52.709 406 180 2 8 401 12 417 5.16e-146 429
MS.gene22564.t1 MTR_7g028050 52.985 402 176 3 8 396 3 404 2.17e-145 427
MS.gene22564.t1 MTR_5g047260 53.500 400 178 2 8 399 19 418 4.82e-145 427
MS.gene22564.t1 MTR_3g088885 46.244 426 208 5 3 408 6 430 1.41e-124 374
MS.gene22564.t1 MTR_1g029520 46.766 402 190 6 22 399 254 655 1.79e-117 363
MS.gene22564.t1 MTR_5g047260 52.711 332 149 2 8 331 19 350 5.86e-116 349
MS.gene22564.t1 MTR_7g028050 55.556 288 123 2 114 396 14 301 4.96e-107 325
MS.gene22564.t1 MTR_5g015170 41.866 418 206 7 9 391 12 427 4.47e-104 323
MS.gene22564.t1 MTR_5g047260 51.890 291 132 2 8 290 19 309 4.42e-96 296
MS.gene22564.t1 MTR_4g097380 39.430 421 220 5 2 391 24 440 3.58e-94 297
MS.gene22564.t1 MTR_5g011600 87.931 116 14 0 467 582 3 118 3.37e-68 216
MS.gene22564.t1 MTR_5g011680 60.563 142 39 5 427 556 154 290 3.41e-41 151
MS.gene22564.t1 MTR_5g011610 57.971 138 49 4 427 558 70 204 2.73e-35 135
MS.gene22564.t1 MTR_5g011610 64.634 82 20 3 427 501 224 303 1.49e-19 90.5
MS.gene22564.t1 MTR_5g011620 56.934 137 52 3 427 558 127 261 2.45e-31 129
MS.gene22564.t1 MTR_4g101990 48.193 166 72 4 427 581 156 318 1.72e-22 99.4
MS.gene22564.t1 MTR_7g074935 52.778 144 53 5 427 559 139 278 3.67e-20 92.4
MS.gene22564.t1 MTR_8g036160 44.516 155 72 4 427 569 154 306 2.39e-19 90.5
MS.gene22564.t1 MTR_5g011590 92.683 41 3 0 427 467 96 136 9.74e-19 83.2
MS.gene22564.t1 MTR_1g061530 36.196 163 83 7 427 576 153 307 1.83e-18 87.8
MS.gene22564.t1 MTR_6g061670 39.259 135 67 4 427 551 142 271 6.73e-16 79.3
MS.gene22564.t1 MTR_6g061670 39.259 135 67 4 427 551 137 266 7.49e-16 79.3
MS.gene22564.t1 MTR_1g079780 43.590 117 55 4 443 553 140 251 4.09e-15 77.0
MS.gene22564.t1 MTR_1g076710 46.512 129 55 5 427 544 146 271 4.60e-14 74.3
MS.gene22564.t1 MTR_7g077120 41.860 129 60 5 427 543 169 294 8.44e-14 73.6
MS.gene22564.t1 MTR_1g012740 28.571 133 88 2 231 362 27 153 1.16e-13 69.7
MS.gene22564.t1 MTR_5g010330 37.600 125 61 6 427 538 146 266 1.52e-11 66.2
MS.gene22564.t1 MTR_7g116320 47.115 104 46 3 427 523 155 256 2.15e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22564.t1 AT1G12420 68.171 421 130 3 8 426 8 426 0.0 575
MS.gene22564.t1 AT4G22780 58.124 437 169 6 1 426 1 434 3.09e-177 509
MS.gene22564.t1 AT4G22780 58.124 437 169 6 1 426 1 434 3.09e-177 509
MS.gene22564.t1 AT1G12420 66.573 356 115 3 73 426 1 354 1.26e-164 473
MS.gene22564.t1 AT1G69040 51.932 414 179 3 8 405 13 422 3.08e-145 427
MS.gene22564.t1 AT1G69040 51.932 414 179 3 8 405 9 418 3.85e-145 427
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 4 395 7.84e-137 405
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 4 395 7.84e-137 405
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 18 409 1.04e-136 405
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 4 395 1.04e-136 405
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 18 409 1.12e-136 405
MS.gene22564.t1 AT3G01990 51.908 393 179 3 8 391 18 409 1.12e-136 405
MS.gene22564.t1 AT2G03730 50.485 412 178 6 8 396 13 421 2.69e-130 389
MS.gene22564.t1 AT2G03730 50.485 412 178 6 8 396 13 421 2.69e-130 389
MS.gene22564.t1 AT1G76990 48.276 406 193 3 3 391 6 411 5.48e-130 388
MS.gene22564.t1 AT1G76990 48.276 406 193 3 3 391 6 411 5.48e-130 388
MS.gene22564.t1 AT1G76990 48.276 406 193 3 3 391 6 411 5.48e-130 388
MS.gene22564.t1 AT1G76990 48.276 406 193 3 3 391 6 411 5.48e-130 388
MS.gene22564.t1 AT1G76990 48.276 406 193 3 3 391 6 411 5.48e-130 388
MS.gene22564.t1 AT3G01990 51.220 328 150 3 8 326 18 344 9.63e-108 327
MS.gene22564.t1 AT3G01990 51.220 328 150 3 8 326 4 330 1.22e-107 327
MS.gene22564.t1 AT5G25320 38.739 444 221 7 3 396 6 448 3.98e-107 331
MS.gene22564.t1 AT3G01990 51.393 323 147 3 8 321 18 339 1.32e-106 324
MS.gene22564.t1 AT5G25320 39.024 410 201 6 35 396 1 409 2.19e-101 315
MS.gene22564.t1 AT5G65890 38.955 421 224 4 4 391 8 428 2.79e-96 302
MS.gene22564.t1 AT5G65890 38.955 421 224 4 4 391 8 428 2.79e-96 302
MS.gene22564.t1 AT5G65890 38.667 375 197 4 50 391 2 376 1.73e-85 273
MS.gene22564.t1 AT5G65890 38.667 375 197 4 50 391 2 376 1.73e-85 273
MS.gene22564.t1 AT3G01990 48.780 287 137 3 8 285 4 289 4.31e-85 267
MS.gene22564.t1 AT3G01990 48.780 287 137 3 8 285 18 303 4.39e-85 268
MS.gene22564.t1 AT5G25320 37.669 369 179 7 3 321 6 373 1.15e-82 263
MS.gene22564.t1 AT5G65890 38.176 296 165 2 114 391 19 314 3.95e-65 217
MS.gene22564.t1 AT4G12080 45.294 170 73 7 402 554 151 317 1.07e-25 109
MS.gene22564.t1 AT4G25320 40.741 162 74 4 389 530 130 289 4.18e-21 96.3
MS.gene22564.t1 AT5G62260 45.833 120 53 3 424 533 169 286 2.01e-19 91.3
MS.gene22564.t1 AT5G62260 45.833 120 53 3 424 533 169 286 2.01e-19 91.3
MS.gene22564.t1 AT5G51590 50.000 108 42 3 427 524 190 295 2.67e-18 87.8
MS.gene22564.t1 AT5G62260 44.262 122 51 4 424 530 169 288 1.05e-17 84.3
MS.gene22564.t1 AT2G33620 38.182 165 86 5 419 569 167 329 2.90e-17 84.0
MS.gene22564.t1 AT2G33620 38.182 165 86 5 419 569 167 329 2.90e-17 84.0
MS.gene22564.t1 AT2G33620 38.182 165 86 5 419 569 167 329 2.90e-17 84.0
MS.gene22564.t1 AT2G33620 38.182 165 86 5 419 569 167 329 2.90e-17 84.0
MS.gene22564.t1 AT2G45850 41.985 131 61 5 422 540 170 297 5.64e-17 83.2
MS.gene22564.t1 AT2G45850 41.985 131 61 5 422 540 170 297 5.64e-17 83.2
MS.gene22564.t1 AT2G45850 45.045 111 48 4 422 522 170 277 4.41e-15 76.3
MS.gene22564.t1 AT3G04590 40.000 120 63 3 427 539 183 300 1.05e-14 75.9
MS.gene22564.t1 AT3G04590 40.000 120 63 3 427 539 183 300 2.33e-14 75.9
MS.gene22564.t1 AT4G00200 48.760 121 49 4 427 536 135 253 2.42e-14 74.7
MS.gene22564.t1 AT4G00200 48.760 121 49 4 427 536 135 253 2.42e-14 74.7
MS.gene22564.t1 AT4G22770 45.669 127 56 4 427 542 162 286 1.44e-13 72.8
MS.gene22564.t1 AT4G22770 45.669 127 56 4 427 542 162 286 1.44e-13 72.8
MS.gene22564.t1 AT4G17950 36.885 122 66 3 427 537 233 354 1.87e-11 67.0

Find 107 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCCTTTCTGCCCAATTC+TGG 0.217063 5.2:-4262578 None:intergenic
TATCAAATTCAATCTTTATC+TGG 0.238033 5.2:+4264435 MS.gene22564:CDS
TATGTTAAAGACTGCGATTC+TGG 0.254803 5.2:+4262342 MS.gene22564:CDS
CGCTCTGGTTCTGAACTAAT+TGG 0.282210 5.2:-4262855 None:intergenic
TTCCACATCACTCATCAAAA+TGG 0.335568 5.2:+4262005 MS.gene22564:CDS
TTCCTAGTATCTGCCACTGC+TGG 0.343577 5.2:-4264932 None:intergenic
CTTCTGCCTAACAGACTCTA+TGG 0.349251 5.2:-4263191 None:intergenic
CTCACTGCGCTTGAATTATC+AGG 0.356914 5.2:+4262207 MS.gene22564:CDS
GCATTGGTGGTGCAGTGTTA+TGG 0.357579 5.2:+4263293 MS.gene22564:CDS
AATATGAAAAGCTCTTAATA+AGG 0.358985 5.2:+4260952 MS.gene22564:CDS
CTGTAGTGACGGTCCAGAAT+TGG 0.362155 5.2:+4262565 MS.gene22564:CDS
TTGGTTACTATTTGTGTTGA+TGG 0.365674 5.2:-4262697 None:intergenic
GGTGCAGTGTTATGGTCTAT+TGG 0.370603 5.2:+4263301 MS.gene22564:CDS
TTGGGCAGAAAGGGGCTATT+CGG 0.373387 5.2:+4262584 MS.gene22564:CDS
GTTTCTTTAGTGGATTTAGA+TGG 0.376952 5.2:+4264489 MS.gene22564:CDS
TTTCAAGAGCCATCATTAAT+CGG 0.393804 5.2:+4264225 MS.gene22564:CDS
TCTATGGTTGTTGGATCAGC+TGG 0.393817 5.2:-4263175 None:intergenic
GTGCAGTGTTATGGTCTATT+GGG 0.403650 5.2:+4263302 MS.gene22564:CDS
TGGCATGAATGTTTCTTTAG+TGG 0.405897 5.2:+4264479 MS.gene22564:CDS
GGCTCGTTCATGCGTAGATC+TGG 0.411490 5.2:+4264456 MS.gene22564:CDS
GTTGTTGGCGGTCGCGTAGC+TGG 0.414057 5.2:+4264516 MS.gene22564:CDS
ATTAATCGGCCTCAAGCGTC+TGG 0.417001 5.2:+4264239 MS.gene22564:CDS
GACCGTCACTACAGTGTTAT+CGG 0.418171 5.2:-4262556 None:intergenic
TCGTCTTCATCTTGCTTCCA+TGG 0.419506 5.2:+4264886 MS.gene22564:CDS
TCCCAGCAGTGGCAGATACT+AGG 0.426107 5.2:+4264930 MS.gene22564:CDS
TTCTGATGGCAAATGGTTCA+TGG 0.431070 5.2:+4261865 MS.gene22564:CDS
TGAATTACACGTTGTCGCTC+TGG 0.438055 5.2:-4262870 None:intergenic
TGTAGTGACGGTCCAGAATT+GGG 0.443034 5.2:+4262566 MS.gene22564:CDS
GGTCCAGAATTGGGCAGAAA+GGG 0.446856 5.2:+4262575 MS.gene22564:CDS
AAATAGTAACCAAGCTTACT+TGG 0.448187 5.2:+4262707 MS.gene22564:CDS
TTTCTGAGAATCCTCAATAG+TGG 0.448253 5.2:-4262367 None:intergenic
ATATATCTTCTGATGGCAAA+TGG 0.450984 5.2:+4261858 MS.gene22564:CDS
ATGCGAACCTTCCGAGAGAA+TGG 0.453096 5.2:+4263070 MS.gene22564:CDS
AAGCGCAGTGAGACCGTTTG+AGG 0.464728 5.2:-4262196 None:intergenic
ATCGGAAGTAAGCTTGAGAA+TGG 0.464732 5.2:-4262538 None:intergenic
TCCTAGTATCTGCCACTGCT+GGG 0.465116 5.2:-4264931 None:intergenic
CATGGAGTGGCCAGCATGTA+CGG 0.465567 5.2:+4260926 None:intergenic
GACGACAAATTATTAAGCAT+TGG 0.476828 5.2:-4264868 None:intergenic
CGTGTGCTCTACTGCTACTC+TGG 0.478413 5.2:+4261644 MS.gene22564:CDS
TTCAAGCAATTTAGAAGTGA+AGG 0.478862 5.2:+4263219 MS.gene22564:CDS
GCTGCTCACATGTCTTCTGC+TGG 0.482937 5.2:+4264844 MS.gene22564:CDS
TTCTATACTGATTATCTCCA+TGG 0.483373 5.2:-4264903 None:intergenic
CGGTCCAGAATTGGGCAGAA+AGG 0.486596 5.2:+4262574 MS.gene22564:CDS
CTAACAGACTCTATGGTTGT+TGG 0.492579 5.2:-4263184 None:intergenic
CAACAACCATAGAGTCTGTT+AGG 0.493077 5.2:+4263185 MS.gene22564:CDS
GTGAGAACTAATTCCTCAAA+CGG 0.496314 5.2:+4262183 MS.gene22564:CDS
AAATAATTACCAAGTAAGCT+TGG 0.502845 5.2:-4262716 None:intergenic
CGCTTGAGGCCGATTAATGA+TGG 0.504198 5.2:-4264234 None:intergenic
GATTTAGATGGAAATGTTGT+TGG 0.508995 5.2:+4264501 MS.gene22564:CDS
TCAATGTTTAAAAGCTTCTG+TGG 0.509902 5.2:+4262890 MS.gene22564:CDS
ATTATACACATTGACATATG+AGG 0.511672 5.2:+4264265 MS.gene22564:CDS
AGTATCTGCCACTGCTGGGA+GGG 0.514630 5.2:-4264927 None:intergenic
GAGTCTGTTAGGCAGAAGAT+TGG 0.515644 5.2:+4263196 MS.gene22564:CDS
GTCTGAGGATGTTGCTATGA+AGG 0.517125 5.2:+4264148 MS.gene22564:intron
TAAAAGCTTCTGTGGAGAGA+AGG 0.517290 5.2:+4262898 MS.gene22564:CDS
GATCAAACAGTTGGCATTGG+TGG 0.520850 5.2:+4263280 MS.gene22564:CDS
TTAGATGGAAATGTTGTTGG+CGG 0.522047 5.2:+4264504 MS.gene22564:CDS
TCATATTCATCCGTACATGC+TGG 0.524946 5.2:-4260936 None:intergenic
AACAGGTTATTAGTGCAAGA+AGG 0.528541 5.2:+4261771 MS.gene22564:intron
CGGTCGCGTAGCTGGTCCAT+TGG 0.528960 5.2:+4264524 MS.gene22564:CDS
TAACATTAAGCCCATTCTCT+CGG 0.533741 5.2:-4263081 None:intergenic
TGCGAACCTTCCGAGAGAAT+GGG 0.534209 5.2:+4263071 MS.gene22564:CDS
ACAGGACTTGCAGCCACCAA+TGG 0.535152 5.2:-4264540 None:intergenic
CGATTCTGGATCCACTATTG+AGG 0.535668 5.2:+4262356 MS.gene22564:CDS
GTTATTAGTGCAAGAAGGAA+TGG 0.538576 5.2:+4261776 MS.gene22564:CDS
TCGCGTAGCTGGTCCATTGG+TGG 0.545371 5.2:+4264527 MS.gene22564:CDS
ACATTGAAGATCAGCAAGTA+CGG 0.553801 5.2:-4262265 None:intergenic
GAGGATCAAACAGTTGGCAT+TGG 0.553918 5.2:+4263277 MS.gene22564:CDS
CTCTACTGCTACTCTGGTCA+AGG 0.554798 5.2:+4261650 MS.gene22564:CDS
AAAAGCTTCTGTGGAGAGAA+GGG 0.557923 5.2:+4262899 MS.gene22564:CDS
GAGAGAGAGGATCAAACAGT+TGG 0.560487 5.2:+4263271 MS.gene22564:CDS
TAGTATCTGCCACTGCTGGG+AGG 0.560726 5.2:-4264928 None:intergenic
ATTAAGCCCATTCTCTCGGA+AGG 0.564565 5.2:-4263077 None:intergenic
CGACAGAAGACCAACTCTAT+CGG 0.565281 5.2:-4262232 None:intergenic
TCCCAGGTACTTACAGCCAC+AGG 0.568076 5.2:-4264558 None:intergenic
AAGGCTTATATATCTTCTGA+TGG 0.568126 5.2:+4261851 MS.gene22564:CDS
TCGGAAGTAAGCTTGAGAAT+GGG 0.570198 5.2:-4262537 None:intergenic
ATGTGATGTTGTTGAAGCTA+AGG 0.571401 5.2:+4262284 MS.gene22564:CDS
TTCTATGTAACAGATGTGAC+TGG 0.583335 5.2:+4263148 MS.gene22564:CDS
ATTGGTGGCTGCAAGTCCTG+TGG 0.583654 5.2:+4264542 MS.gene22564:CDS
GGTTGTGAGTGTTCAATGCA+AGG 0.587602 5.2:+4262605 MS.gene22564:CDS
CAGAGTAGCAGTAGAGCACA+CGG 0.589491 5.2:-4261643 None:intergenic
TGTGGAGAGAAGGGCGTCTG+AGG 0.592743 5.2:+4262908 MS.gene22564:CDS
CGATAGAGTTGGTCTTCTGT+CGG 0.600658 5.2:+4262233 MS.gene22564:CDS
TCATCAGAAGACAGAGAGAG+AGG 0.602288 5.2:+4263258 MS.gene22564:CDS
GATAACCACCGTAGAAAACA+TGG 0.603554 5.2:+4263114 MS.gene22564:CDS
TCGTTCATGCGTAGATCTGG+TGG 0.604143 5.2:+4264459 MS.gene22564:CDS
ATACGCATTCTATATGCAAG+TGG 0.604436 5.2:+4264197 MS.gene22564:CDS
TTATCAGGAACCGATAGAGT+TGG 0.606433 5.2:+4262222 MS.gene22564:CDS
TTCCGATAACACTGTAGTGA+CGG 0.607402 5.2:+4262554 MS.gene22564:CDS
TATAATGTTCCAGACGCTTG+AGG 0.613875 5.2:-4264248 None:intergenic
CTGTCATGCATAGTGAAAGA+AGG 0.621068 5.2:+4262472 MS.gene22564:CDS
TATAGAATCCCTCCCAGCAG+TGG 0.622176 5.2:+4264919 MS.gene22564:CDS
GTCTTCTGATGATAAAACAA+TGG 0.624022 5.2:-4263247 None:intergenic
GTCCAGAATTGGGCAGAAAG+GGG 0.631234 5.2:+4262576 MS.gene22564:CDS
TATGCACAGAAGACAAGCAA+GGG 0.636043 5.2:+4263032 MS.gene22564:CDS
GCTAAGGTGTGGACTCACAA+TGG 0.637755 5.2:+4262300 MS.gene22564:CDS
GACATGTGAGCAGCTAACGT+TGG 0.646147 5.2:-4264835 None:intergenic
GTCTTTAACATAGATCAAAG+AGG 0.646875 5.2:-4262331 None:intergenic
GGTATGCAATTTGACAGACA+TGG 0.648444 5.2:+4262653 MS.gene22564:CDS
TTATGCACAGAAGACAAGCA+AGG 0.649693 5.2:+4263031 MS.gene22564:CDS
TAATAAGGATGAGCACACCC+AGG 0.655035 5.2:+4260967 MS.gene22564:CDS
AGAATGCGTATAGCTCCTTG+TGG 0.659335 5.2:-4264185 None:intergenic
TCGCTGATCGTGACTACGAG+AGG 0.665248 5.2:+4262511 MS.gene22564:CDS
AATCAAACTATTATTTGACG+TGG 0.677371 5.2:+4262632 MS.gene22564:CDS
GATGGCAAATGGTTCATGGA+TGG 0.678400 5.2:+4261869 MS.gene22564:CDS
ATGTTGTTGAAGCTAAGGTG+TGG 0.713930 5.2:+4262289 MS.gene22564:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTTCTATATTATCAA+TGG + chr5.2:4263769-4263788 MS.gene22564:intron 15.0%
!! AAATCAAATCAAATATTAAG+AGG + chr5.2:4264600-4264619 MS.gene22564:intron 15.0%
!! AAGATTTCTATATTATCAAT+GGG + chr5.2:4263770-4263789 MS.gene22564:intron 15.0%
!! AATATTAAACAAAAACACAT+TGG + chr5.2:4263876-4263895 MS.gene22564:intron 15.0%
!! ATAATATAGAAATCTTTCAA+TGG - chr5.2:4263766-4263785 None:intergenic 15.0%
!! TATTAAAAAATGATAGACAA+AGG - chr5.2:4261486-4261505 None:intergenic 15.0%
!! TTCAAATCATTAATTACTTT+AGG + chr5.2:4262803-4262822 MS.gene22564:intron 15.0%
!! TTTAGTTACATATTAACATT+TGG + chr5.2:4261965-4261984 MS.gene22564:intron 15.0%
!!! CATTTTAAAATATATAGAAC+AGG + chr5.2:4262049-4262068 MS.gene22564:CDS 15.0%
!!! GTTATTAATATCAATTTTAG+TGG + chr5.2:4263634-4263653 MS.gene22564:intron 15.0%
!!! TCTTAATCTTTTAATTAAGA+AGG + chr5.2:4261832-4261851 MS.gene22564:CDS 15.0%
!!! TGATCTTTAATCTTAATTTT+CGG + chr5.2:4262123-4262142 MS.gene22564:intron 15.0%
!!! TTGTAATTGCAAAATTTTAT+TGG + chr5.2:4263724-4263743 MS.gene22564:intron 15.0%
!! AAACTAAAGAAAATCTATGT+TGG - chr5.2:4261290-4261309 None:intergenic 20.0%
!! AACTAAAGAAAATCTATGTT+GGG - chr5.2:4261289-4261308 None:intergenic 20.0%
!! AATATGAAAAGCTCTTAATA+AGG + chr5.2:4260952-4260971 MS.gene22564:CDS 20.0%
!! ACTTATAAACTAAATGATCA+AGG - chr5.2:4261005-4261024 None:intergenic 20.0%
!! ATAATAAAACACCAATTAGA+AGG + chr5.2:4264647-4264666 MS.gene22564:intron 20.0%
!! ATATTCTTTGCTTTGTATTT+GGG + chr5.2:4263405-4263424 MS.gene22564:intron 20.0%
!! ATCAATATTAACAGTATATG+TGG - chr5.2:4262107-4262126 None:intergenic 20.0%
!! ATTGTTAATTGTGTGATTAT+AGG + chr5.2:4262994-4263013 MS.gene22564:intron 20.0%
!! TATCAAATTCAATCTTTATC+TGG + chr5.2:4264435-4264454 MS.gene22564:CDS 20.0%
!! TCATTCAAAATATTTGATCA+AGG - chr5.2:4261101-4261120 None:intergenic 20.0%
!! TTCATTCATTAATTAATTCC+TGG - chr5.2:4263936-4263955 None:intergenic 20.0%
!! TTGTTAATTGTGTGATTATA+GGG + chr5.2:4262995-4263014 MS.gene22564:intron 20.0%
!!! AATAATGGAAATTGAATTTC+AGG + chr5.2:4264407-4264426 MS.gene22564:intron 20.0%
!!! ACATAAAAAGTTTAGAATGA+TGG + chr5.2:4263435-4263454 MS.gene22564:intron 20.0%
!!! ATAATGGAAATTGAATTTCA+GGG + chr5.2:4264408-4264427 MS.gene22564:intron 20.0%
!!! ATTCTTTATGGAAAGAATTT+TGG - chr5.2:4261687-4261706 None:intergenic 20.0%
!!! GTACATACATACTTATTTTA+TGG + chr5.2:4263612-4263631 MS.gene22564:intron 20.0%
!!! TATGACAAATTGATTCTTTA+TGG - chr5.2:4261699-4261718 None:intergenic 20.0%
!!! TCTTTTTTGATCAAATTAAC+AGG + chr5.2:4261754-4261773 MS.gene22564:intron 20.0%
!!! TTCATTTTAATATCTCCAAA+TGG + chr5.2:4261433-4261452 MS.gene22564:intron 20.0%
! AAAATTGGACAGAACAAATT+GGG + chr5.2:4263559-4263578 MS.gene22564:intron 25.0%
! AAATAATTACCAAGTAAGCT+TGG - chr5.2:4262719-4262738 None:intergenic 25.0%
! AATCAAACTATTATTTGACG+TGG + chr5.2:4262632-4262651 MS.gene22564:CDS 25.0%
! ACTAATTCAATGAACTAACA+TGG + chr5.2:4264335-4264354 MS.gene22564:intron 25.0%
! AGATGAAAGTAATACAGAAT+AGG + chr5.2:4263505-4263524 MS.gene22564:intron 25.0%
! AGATTGATCTTTAATAGTCT+AGG + chr5.2:4261028-4261047 MS.gene22564:intron 25.0%
! ATTATACACATTGACATATG+AGG + chr5.2:4264265-4264284 MS.gene22564:CDS 25.0%
! CATATACTGAACTTCAAAAA+AGG - chr5.2:4262747-4262766 None:intergenic 25.0%
! CATATTCTTTGCTTTGTATT+TGG + chr5.2:4263404-4263423 MS.gene22564:intron 25.0%
! CTATGTGTTTCTTTCAATAA+TGG + chr5.2:4264392-4264411 MS.gene22564:intron 25.0%
! GATAGAGTTCAATGTAAAAA+TGG - chr5.2:4263675-4263694 None:intergenic 25.0%
! GATCAAGGAGTAAATAAAAT+TGG - chr5.2:4261086-4261105 None:intergenic 25.0%
! GTTTATGTAGTAGTTAATCT+CGG + chr5.2:4264672-4264691 MS.gene22564:intron 25.0%
! TAATTAATCCCAAACTATAC+AGG - chr5.2:4263345-4263364 None:intergenic 25.0%
! TATATAACCTACTTTATCTC+TGG - chr5.2:4264063-4264082 None:intergenic 25.0%
! TGATGACTGATTAGAATAAA+TGG + chr5.2:4264105-4264124 MS.gene22564:intron 25.0%
! TTTATTATGACCTTTGCTTA+AGG + chr5.2:4262953-4262972 MS.gene22564:intron 25.0%
!! AAGTTTAGAATGATGGAATT+TGG + chr5.2:4263442-4263461 MS.gene22564:intron 25.0%
!! TCTAAACTTTTTATGTACAC+AGG - chr5.2:4263431-4263450 None:intergenic 25.0%
!! TTTGTGTTATTCTGCTAAAT+TGG + chr5.2:4261933-4261952 MS.gene22564:intron 25.0%
!! TTTTATATAAGACACAAGGA+TGG + chr5.2:4262828-4262847 MS.gene22564:CDS 25.0%
!!! ACAACTTTTAGGTACAAAAT+TGG + chr5.2:4263544-4263563 MS.gene22564:intron 25.0%
!!! ATACAAAAGGCATCAAAATT+GGG - chr5.2:4261599-4261618 None:intergenic 25.0%
!!! CTATTTTGATGTGTTGTTTT+TGG + chr5.2:4261321-4261340 MS.gene22564:intron 25.0%
!!! TAGTTAATAGTAGTTCTAGT+TGG + chr5.2:4263468-4263487 MS.gene22564:intron 25.0%
!!! TTTATGGAAAGAATTTTGGT+AGG - chr5.2:4261683-4261702 None:intergenic 25.0%
AAACTGAATTATTGCAACCA+AGG - chr5.2:4261411-4261430 None:intergenic 30.0%
AAATAGTAACCAAGCTTACT+TGG + chr5.2:4262707-4262726 MS.gene22564:CDS 30.0%
AAGGCTTATATATCTTCTGA+TGG + chr5.2:4261851-4261870 MS.gene22564:CDS 30.0%
AAGTAATACAGAATAGGTCT+TGG + chr5.2:4263511-4263530 MS.gene22564:intron 30.0%
ATAAAACACCAATTAGAAGG+AGG + chr5.2:4264650-4264669 MS.gene22564:intron 30.0%
ATATATCTTCTGATGGCAAA+TGG + chr5.2:4261858-4261877 MS.gene22564:CDS 30.0%
ATTTCATCCAGAGATAAAGT+AGG + chr5.2:4264053-4264072 MS.gene22564:intron 30.0%
CAAAATTGGACAGAACAAAT+TGG + chr5.2:4263558-4263577 MS.gene22564:intron 30.0%
CAAATATCTCTCATTGTCAT+TGG + chr5.2:4263977-4263996 MS.gene22564:intron 30.0%
CAAGGAAAATTAACAAACCT+GGG - chr5.2:4260987-4261006 None:intergenic 30.0%
CAATGACAATGAGAGATATT+TGG - chr5.2:4263979-4263998 None:intergenic 30.0%
CACTTGTTTCAACATATATG+TGG - chr5.2:4261129-4261148 None:intergenic 30.0%
CCTTGAATGAATCTAAGTTA+CGG + chr5.2:4261240-4261259 MS.gene22564:intron 30.0%
CGTAACTTAGATTCATTCAA+GGG - chr5.2:4261242-4261261 None:intergenic 30.0%
GACGACAAATTATTAAGCAT+TGG - chr5.2:4264871-4264890 None:intergenic 30.0%
GATTGATATGTATCAGGTAA+TGG + chr5.2:4264735-4264754 MS.gene22564:intron 30.0%
GATTTAGATGGAAATGTTGT+TGG + chr5.2:4264501-4264520 MS.gene22564:CDS 30.0%
GTAACTTAGATTCATTCAAG+GGG - chr5.2:4261241-4261260 None:intergenic 30.0%
GTCATATCGAAAAGTTCAAA+AGG - chr5.2:4261913-4261932 None:intergenic 30.0%
GTCTTCTGATGATAAAACAA+TGG - chr5.2:4263250-4263269 None:intergenic 30.0%
GTCTTTAACATAGATCAAAG+AGG - chr5.2:4262334-4262353 None:intergenic 30.0%
TACACATTATTGATGCCATT+TGG - chr5.2:4261451-4261470 None:intergenic 30.0%
TACATAAACCTCCTTCTAAT+TGG - chr5.2:4264661-4264680 None:intergenic 30.0%
TATCAATCCATTGGAAAGAA+TGG - chr5.2:4264723-4264742 None:intergenic 30.0%
TCAAGGAAAATTAACAAACC+TGG - chr5.2:4260988-4261007 None:intergenic 30.0%
TCAATGTTTAAAAGCTTCTG+TGG + chr5.2:4262890-4262909 MS.gene22564:CDS 30.0%
TGTTTCAACATATATGTGGT+AGG - chr5.2:4261125-4261144 None:intergenic 30.0%
TTCAAGCAATTTAGAAGTGA+AGG + chr5.2:4263219-4263238 MS.gene22564:CDS 30.0%
TTCTATATTATCAATGGGAG+TGG + chr5.2:4263775-4263794 MS.gene22564:intron 30.0%
TTGGTTACTATTTGTGTTGA+TGG - chr5.2:4262700-4262719 None:intergenic 30.0%
TTGTTGAAATAAACTTCTGC+TGG - chr5.2:4261358-4261377 None:intergenic 30.0%
TTTCAAGAGCCATCATTAAT+CGG + chr5.2:4264225-4264244 MS.gene22564:CDS 30.0%
! TTCTATACTGATTATCTCCA+TGG - chr5.2:4264906-4264925 None:intergenic 30.0%
!! AATAGTAGTTCTAGTTGGTT+TGG + chr5.2:4263473-4263492 MS.gene22564:intron 30.0%
!! ATTTGTTGCCATGTTTTCTA+CGG - chr5.2:4263125-4263144 None:intergenic 30.0%
!! CATACAAAAGGCATCAAAAT+TGG - chr5.2:4261600-4261619 None:intergenic 30.0%
!! CGTTTAAGAAACGTTTTGAA+GGG + chr5.2:4262408-4262427 MS.gene22564:CDS 30.0%
!! GGAGTTTTATATAAGACACA+AGG + chr5.2:4262824-4262843 MS.gene22564:intron 30.0%
!! GTTTCTTTAGTGGATTTAGA+TGG + chr5.2:4264489-4264508 MS.gene22564:CDS 30.0%
AACAGGTTATTAGTGCAAGA+AGG + chr5.2:4261771-4261790 MS.gene22564:intron 35.0%
ACAACCCTGTTTCATACAAA+AGG - chr5.2:4261612-4261631 None:intergenic 35.0%
ACATTGAAGATCAGCAAGTA+CGG - chr5.2:4262268-4262287 None:intergenic 35.0%
AGAAGGAACCTGTATAGTTT+GGG + chr5.2:4263334-4263353 MS.gene22564:intron 35.0%
ATACGCATTCTATATGCAAG+TGG + chr5.2:4264197-4264216 MS.gene22564:CDS 35.0%
ATGTGATGTTGTTGAAGCTA+AGG + chr5.2:4262284-4262303 MS.gene22564:CDS 35.0%
ATTCTCACCATTCTTTCCAA+TGG + chr5.2:4264713-4264732 MS.gene22564:intron 35.0%
ATTGGGTTCATTGTTCATCT+AGG + chr5.2:4263576-4263595 MS.gene22564:intron 35.0%
CCGTAACTTAGATTCATTCA+AGG - chr5.2:4261243-4261262 None:intergenic 35.0%
CCTGATACATATCAATCCAT+TGG - chr5.2:4264732-4264751 None:intergenic 35.0%
GCAAGAATGTTCTTTGTCAA+TGG + chr5.2:4261378-4261397 MS.gene22564:intron 35.0%
GGATCGAATAGAGAATGAAA+TGG - chr5.2:4261178-4261197 None:intergenic 35.0%
GTGAGAACTAATTCCTCAAA+CGG + chr5.2:4262183-4262202 MS.gene22564:CDS 35.0%
GTTATTAGTGCAAGAAGGAA+TGG + chr5.2:4261776-4261795 MS.gene22564:CDS 35.0%
TAACATTAAGCCCATTCTCT+CGG - chr5.2:4263084-4263103 None:intergenic 35.0%
TAATACAGAATAGGTCTTGG+TGG + chr5.2:4263514-4263533 MS.gene22564:intron 35.0%
TATGTTAAAGACTGCGATTC+TGG + chr5.2:4262342-4262361 MS.gene22564:CDS 35.0%
TCAGTGTGAAATATACTTCC+AGG + chr5.2:4263915-4263934 MS.gene22564:intron 35.0%
TCATTCTCTATTCGATCCAT+CGG + chr5.2:4261180-4261199 MS.gene22564:intron 35.0%
TGGCATGAATGTTTCTTTAG+TGG + chr5.2:4264479-4264498 MS.gene22564:CDS 35.0%
TTAGATGGAAATGTTGTTGG+CGG + chr5.2:4264504-4264523 MS.gene22564:CDS 35.0%
TTCCACATCACTCATCAAAA+TGG + chr5.2:4262005-4262024 MS.gene22564:CDS 35.0%
TTCTATGTAACAGATGTGAC+TGG + chr5.2:4263148-4263167 MS.gene22564:CDS 35.0%
! ACTTGTCATTTGATTGTCTG+AGG + chr5.2:4264133-4264152 MS.gene22564:intron 35.0%
! CACATTGGAGTATTATGTCT+TGG + chr5.2:4263891-4263910 MS.gene22564:intron 35.0%
! GATGCCTTTTGTATGAAACA+GGG + chr5.2:4261605-4261624 MS.gene22564:intron 35.0%
! GCGTTTAAGAAACGTTTTGA+AGG + chr5.2:4262407-4262426 MS.gene22564:CDS 35.0%
! GTAATGACATTTTGTCCACA+AGG + chr5.2:4264170-4264189 MS.gene22564:CDS 35.0%
! TCATTGTTCATCTAGGACTT+TGG + chr5.2:4263583-4263602 MS.gene22564:intron 35.0%
! TGATGCCTTTTGTATGAAAC+AGG + chr5.2:4261604-4261623 MS.gene22564:intron 35.0%
! TTTCTGAGAATCCTCAATAG+TGG - chr5.2:4262370-4262389 None:intergenic 35.0%
!! CCAATGGATTGATATGTATC+AGG + chr5.2:4264729-4264748 MS.gene22564:intron 35.0%
!! TTCCATTTTGATGAGTGATG+TGG - chr5.2:4262010-4262029 None:intergenic 35.0%
AAAAGCTTCTGTGGAGAGAA+GGG + chr5.2:4262899-4262918 MS.gene22564:CDS 40.0%
AGTGGTGTGGCATCATTAAA+GGG + chr5.2:4263793-4263812 MS.gene22564:intron 40.0%
ATCGGAAGTAAGCTTGAGAA+TGG - chr5.2:4262541-4262560 None:intergenic 40.0%
ATGTTGTTGAAGCTAAGGTG+TGG + chr5.2:4262289-4262308 MS.gene22564:CDS 40.0%
ATTACAAAACGTAGAGCCCA+AGG - chr5.2:4263711-4263730 None:intergenic 40.0%
ATTATTGCAACCAAGGCAAC+CGG - chr5.2:4261404-4261423 None:intergenic 40.0%
CAACAACCATAGAGTCTGTT+AGG + chr5.2:4263185-4263204 MS.gene22564:CDS 40.0%
CTAACAGACTCTATGGTTGT+TGG - chr5.2:4263187-4263206 None:intergenic 40.0%
CTGGATGAAATGCGAAAAAG+AGG - chr5.2:4264044-4264063 None:intergenic 40.0%
CTGTCATGCATAGTGAAAGA+AGG + chr5.2:4262472-4262491 MS.gene22564:CDS 40.0%
GAATGTTCTTTGTCAATGGC+CGG + chr5.2:4261382-4261401 MS.gene22564:intron 40.0%
GAGAAGGAACCTGTATAGTT+TGG + chr5.2:4263333-4263352 MS.gene22564:intron 40.0%
GATAACCACCGTAGAAAACA+TGG + chr5.2:4263114-4263133 MS.gene22564:CDS 40.0%
GGTATGCAATTTGACAGACA+TGG + chr5.2:4262653-4262672 MS.gene22564:CDS 40.0%
GTGCAGTGTTATGGTCTATT+GGG + chr5.2:4263302-4263321 MS.gene22564:CDS 40.0%
TAAAAGCTTCTGTGGAGAGA+AGG + chr5.2:4262898-4262917 MS.gene22564:CDS 40.0%
TATAATGTTCCAGACGCTTG+AGG - chr5.2:4264251-4264270 None:intergenic 40.0%
TATACAGGTTCCTTCTCACT+AGG - chr5.2:4263330-4263349 None:intergenic 40.0%
TATGACCTTTGCTTAAGGAG+TGG + chr5.2:4262958-4262977 MS.gene22564:intron 40.0%
TATGCACAGAAGACAAGCAA+GGG + chr5.2:4263032-4263051 MS.gene22564:CDS 40.0%
TATTATCAATGGGAGTGGTG+TGG + chr5.2:4263780-4263799 MS.gene22564:intron 40.0%
TCATATTCATCCGTACATGC+TGG - chr5.2:4260939-4260958 None:intergenic 40.0%
TCGGAAGTAAGCTTGAGAAT+GGG - chr5.2:4262540-4262559 None:intergenic 40.0%
TTATCAGGAACCGATAGAGT+TGG + chr5.2:4262222-4262241 MS.gene22564:CDS 40.0%
TTATGCACAGAAGACAAGCA+AGG + chr5.2:4263031-4263050 MS.gene22564:CDS 40.0%
TTCCGATAACACTGTAGTGA+CGG + chr5.2:4262554-4262573 MS.gene22564:CDS 40.0%
TTCTGATGGCAAATGGTTCA+TGG + chr5.2:4261865-4261884 MS.gene22564:CDS 40.0%
! GTATTTTGCAACAGTCGCTT+GGG + chr5.2:4262148-4262167 MS.gene22564:intron 40.0%
! GTGGCTGATAGACAACTTTT+AGG + chr5.2:4263533-4263552 MS.gene22564:intron 40.0%
! TGTATTTTGCAACAGTCGCT+TGG + chr5.2:4262147-4262166 MS.gene22564:intron 40.0%
!! GGAACATAGACGTTCTAGAA+GGG - chr5.2:4261578-4261597 None:intergenic 40.0%
!! GTAGTTCTAGTTGGTTTGGT+AGG + chr5.2:4263477-4263496 MS.gene22564:intron 40.0%
AGAATGCGTATAGCTCCTTG+TGG - chr5.2:4264188-4264207 None:intergenic 45.0%
AGACCTATTATTCCCTTCCC+AGG - chr5.2:4264577-4264596 None:intergenic 45.0%
ATTAAGCCCATTCTCTCGGA+AGG - chr5.2:4263080-4263099 None:intergenic 45.0%
CGACAGAAGACCAACTCTAT+CGG - chr5.2:4262235-4262254 None:intergenic 45.0%
CGATTCTGGATCCACTATTG+AGG + chr5.2:4262356-4262375 MS.gene22564:CDS 45.0%
CTCACTGCGCTTGAATTATC+AGG + chr5.2:4262207-4262226 MS.gene22564:CDS 45.0%
CTTCTGCCTAACAGACTCTA+TGG - chr5.2:4263194-4263213 None:intergenic 45.0%
CTTGACCACTCCTTAAGCAA+AGG - chr5.2:4262966-4262985 None:intergenic 45.0%
GACCGTCACTACAGTGTTAT+CGG - chr5.2:4262559-4262578 None:intergenic 45.0%
GAGAGAGAGGATCAAACAGT+TGG + chr5.2:4263271-4263290 MS.gene22564:CDS 45.0%
GAGGATCAAACAGTTGGCAT+TGG + chr5.2:4263277-4263296 MS.gene22564:CDS 45.0%
GAGTCTGTTAGGCAGAAGAT+TGG + chr5.2:4263196-4263215 MS.gene22564:CDS 45.0%
GAGTGGTGTGGCATCATTAA+AGG + chr5.2:4263792-4263811 MS.gene22564:intron 45.0%
GATGGCAAATGGTTCATGGA+TGG + chr5.2:4261869-4261888 MS.gene22564:CDS 45.0%
GGTGCAGTGTTATGGTCTAT+TGG + chr5.2:4263301-4263320 MS.gene22564:CDS 45.0%
GGTTGTGAGTGTTCAATGCA+AGG + chr5.2:4262605-4262624 MS.gene22564:CDS 45.0%
GTACCTGGGAAGGGAATAAT+AGG + chr5.2:4264571-4264590 MS.gene22564:intron 45.0%
GTCTGAGGATGTTGCTATGA+AGG + chr5.2:4264148-4264167 MS.gene22564:intron 45.0%
TAATAAGGATGAGCACACCC+AGG + chr5.2:4260967-4260986 MS.gene22564:CDS 45.0%
TCATCAGAAGACAGAGAGAG+AGG + chr5.2:4263258-4263277 MS.gene22564:CDS 45.0%
TCGTCTTCATCTTGCTTCCA+TGG + chr5.2:4264886-4264905 MS.gene22564:CDS 45.0%
TCTATGGTTGTTGGATCAGC+TGG - chr5.2:4263178-4263197 None:intergenic 45.0%
TGAATTACACGTTGTCGCTC+TGG - chr5.2:4262873-4262892 None:intergenic 45.0%
TGTAGTGACGGTCCAGAATT+GGG + chr5.2:4262566-4262585 MS.gene22564:CDS 45.0%
TTCTCTATTCGATCCATCGG+CGG + chr5.2:4261183-4261202 MS.gene22564:intron 45.0%
! AAAGAGGAAGCATGCAGGAT+TGG - chr5.2:4264028-4264047 None:intergenic 45.0%
! GATCAAACAGTTGGCATTGG+TGG + chr5.2:4263280-4263299 MS.gene22564:CDS 45.0%
! GGGAACATAGACGTTCTAGA+AGG - chr5.2:4261579-4261598 None:intergenic 45.0%
! TGTTGCCATGTTTTCTACGG+TGG - chr5.2:4263122-4263141 None:intergenic 45.0%
!! CGATAGAGTTGGTCTTCTGT+CGG + chr5.2:4262233-4262252 MS.gene22564:CDS 45.0%
!! CGCTCTGGTTCTGAACTAAT+TGG - chr5.2:4262858-4262877 None:intergenic 45.0%
!! TACTTAAAAATATAATAATT+TGG + chr5.2:4263826-4263845 MS.gene22564:intron 5.0%
ATCTTCCCTGCACCTTCCTT+GGG + chr5.2:4263692-4263711 MS.gene22564:intron 50.0%
ATGCGAACCTTCCGAGAGAA+TGG + chr5.2:4263070-4263089 MS.gene22564:CDS 50.0%
ATTAATCGGCCTCAAGCGTC+TGG + chr5.2:4264239-4264258 MS.gene22564:CDS 50.0%
ATTTCTACACACACCGCCGA+TGG - chr5.2:4261199-4261218 None:intergenic 50.0%
CAAAACGTAGAGCCCAAGGA+AGG - chr5.2:4263707-4263726 None:intergenic 50.0%
CAGAGTAGCAGTAGAGCACA+CGG - chr5.2:4261646-4261665 None:intergenic 50.0%
CGCTTGAGGCCGATTAATGA+TGG - chr5.2:4264237-4264256 None:intergenic 50.0%
CTATTGGGAGCCTAGTGAGA+AGG + chr5.2:4263317-4263336 MS.gene22564:intron 50.0%
CTCTACTGCTACTCTGGTCA+AGG + chr5.2:4261650-4261669 MS.gene22564:CDS 50.0%
CTGTAGTGACGGTCCAGAAT+TGG + chr5.2:4262565-4262584 MS.gene22564:CDS 50.0%
GACATGTGAGCAGCTAACGT+TGG - chr5.2:4264838-4264857 None:intergenic 50.0%
GCTAAGGTGTGGACTCACAA+TGG + chr5.2:4262300-4262319 MS.gene22564:CDS 50.0%
GGTCCAGAATTGGGCAGAAA+GGG + chr5.2:4262575-4262594 MS.gene22564:CDS 50.0%
GTCCAGAATTGGGCAGAAAG+GGG + chr5.2:4262576-4262595 MS.gene22564:CDS 50.0%
TATCTTCCCTGCACCTTCCT+TGG + chr5.2:4263691-4263710 MS.gene22564:intron 50.0%
TCCTGTGGCTGTAAGTACCT+GGG + chr5.2:4264557-4264576 MS.gene22564:intron 50.0%
TCGTTCATGCGTAGATCTGG+TGG + chr5.2:4264459-4264478 MS.gene22564:CDS 50.0%
TGCGAACCTTCCGAGAGAAT+GGG + chr5.2:4263071-4263090 MS.gene22564:CDS 50.0%
TGGCTGTAAGTACCTGGGAA+GGG + chr5.2:4264562-4264581 MS.gene22564:intron 50.0%
TTGGGCAGAAAGGGGCTATT+CGG + chr5.2:4262584-4262603 MS.gene22564:CDS 50.0%
! GCGAAAAAGAGGAAGCATGC+AGG - chr5.2:4264033-4264052 None:intergenic 50.0%
!! GCATTGGTGGTGCAGTGTTA+TGG + chr5.2:4263293-4263312 MS.gene22564:CDS 50.0%
AAGCGCAGTGAGACCGTTTG+AGG - chr5.2:4262199-4262218 None:intergenic 55.0%
ACAGGACTTGCAGCCACCAA+TGG - chr5.2:4264543-4264562 None:intergenic 55.0%
AGCCCCTTTCTGCCCAATTC+TGG - chr5.2:4262581-4262600 None:intergenic 55.0%
AGTATCTGCCACTGCTGGGA+GGG - chr5.2:4264930-4264949 None:intergenic 55.0%
CGGTCCAGAATTGGGCAGAA+AGG + chr5.2:4262574-4262593 MS.gene22564:CDS 55.0%
CGTGTGCTCTACTGCTACTC+TGG + chr5.2:4261644-4261663 MS.gene22564:CDS 55.0%
GCTGCTCACATGTCTTCTGC+TGG + chr5.2:4264844-4264863 MS.gene22564:CDS 55.0%
GGCTCGTTCATGCGTAGATC+TGG + chr5.2:4264456-4264475 MS.gene22564:CDS 55.0%
GTCCTGTGGCTGTAAGTACC+TGG + chr5.2:4264556-4264575 MS.gene22564:intron 55.0%
GTGGCTGTAAGTACCTGGGA+AGG + chr5.2:4264561-4264580 MS.gene22564:intron 55.0%
TAGTATCTGCCACTGCTGGG+AGG - chr5.2:4264931-4264950 None:intergenic 55.0%
TCCCAGGTACTTACAGCCAC+AGG - chr5.2:4264561-4264580 None:intergenic 55.0%
TCGCTGATCGTGACTACGAG+AGG + chr5.2:4262511-4262530 MS.gene22564:CDS 55.0%
TTGTCAATGGCCGGTTGCCT+TGG + chr5.2:4261391-4261410 MS.gene22564:intron 55.0%
! ATTGGTGGCTGCAAGTCCTG+TGG + chr5.2:4264542-4264561 MS.gene22564:CDS 55.0%
! TAGAGCCCAAGGAAGGTGCA+GGG - chr5.2:4263700-4263719 None:intergenic 55.0%
TCGCGTAGCTGGTCCATTGG+TGG + chr5.2:4264527-4264546 MS.gene22564:CDS 60.0%
! GTAGAGCCCAAGGAAGGTGC+AGG - chr5.2:4263701-4263720 None:intergenic 60.0%
!! TGTGGAGAGAAGGGCGTCTG+AGG + chr5.2:4262908-4262927 MS.gene22564:CDS 60.0%
CGGTCGCGTAGCTGGTCCAT+TGG + chr5.2:4264524-4264543 MS.gene22564:CDS 65.0%
GTTGTTGGCGGTCGCGTAGC+TGG + chr5.2:4264516-4264535 MS.gene22564:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 4260927 4264951 4260927 ID=MS.gene22564
chr5.2 mRNA 4260927 4264951 4260927 ID=MS.gene22564.t1;Parent=MS.gene22564
chr5.2 exon 4260927 4260988 4260927 ID=MS.gene22564.t1.exon1;Parent=MS.gene22564.t1
chr5.2 CDS 4260927 4260988 4260927 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4261626 4261671 4261626 ID=MS.gene22564.t1.exon2;Parent=MS.gene22564.t1
chr5.2 CDS 4261626 4261671 4261626 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4261776 4261890 4261776 ID=MS.gene22564.t1.exon3;Parent=MS.gene22564.t1
chr5.2 CDS 4261776 4261890 4261776 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4262003 4262070 4262003 ID=MS.gene22564.t1.exon4;Parent=MS.gene22564.t1
chr5.2 CDS 4262003 4262070 4262003 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4262162 4262728 4262162 ID=MS.gene22564.t1.exon5;Parent=MS.gene22564.t1
chr5.2 CDS 4262162 4262728 4262162 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4262825 4262929 4262825 ID=MS.gene22564.t1.exon6;Parent=MS.gene22564.t1
chr5.2 CDS 4262825 4262929 4262825 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4263016 4263330 4263016 ID=MS.gene22564.t1.exon7;Parent=MS.gene22564.t1
chr5.2 CDS 4263016 4263330 4263016 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4264155 4264286 4264155 ID=MS.gene22564.t1.exon8;Parent=MS.gene22564.t1
chr5.2 CDS 4264155 4264286 4264155 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4264429 4264566 4264429 ID=MS.gene22564.t1.exon9;Parent=MS.gene22564.t1
chr5.2 CDS 4264429 4264566 4264429 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
chr5.2 exon 4264751 4264951 4264751 ID=MS.gene22564.t1.exon10;Parent=MS.gene22564.t1
chr5.2 CDS 4264751 4264951 4264751 ID=cds.MS.gene22564.t1;Parent=MS.gene22564.t1
Gene Sequence

>MS.gene22564

ATGGAGTGGCCAGCATGTACGGATGAATATGAAAAGCTCTTAATAAGGATGAGCACACCCAGGTTTGTTAATTTTCCTTGATCATTTAGTTTATAAGTTTTAGATTGATCTTTAATAGTCTAGGTGATTTTATTAATTTCTATATGATTTTTATTGCCAATTTTATTTACTCCTTGATCAAATATTTTGAATGATCCTACCACATATATGTTGAAACAAGTGTAGTAGTAGATACTTGAGTCTTTTAACCATTTCATTCTCTATTCGATCCATCGGCGGTGTGTGTAGAAATATATGTTGAGAGATGTCAACCCCTTGAATGAATCTAAGTTACGGAACAATTTTTTTTTTTGAATGATCCCAACATAGATTTTCTTTAGTTTTAAAACATTTACTATTTTGATGTGTTGTTTTTGGTTTCTTTAACTCCAGCAGAAGTTTATTTCAACAAGCAAGAATGTTCTTTGTCAATGGCCGGTTGCCTTGGTTGCAATAATTCAGTTTTATTCATTTTAATATCTCCAAATGGCATCAATAATGTGTATAAAATTTGTTGCCTTTGTCTATCATTTTTTAATAATTTGTTGACTTTTCTAGTCAATTTTTATTTTCTTTTGACTTTTCTGTTCTTATCTCTTCTAACAATTGCCCTTCTAGAACGTCTATGTTCCCAATTTTGATGCCTTTTGTATGAAACAGGGTTGTGATCGACAATGCCGTGTGCTCTACTGCTACTCTGGTCAAGGTAACATTCCTACCAAAATTCTTTCCATAAAGAATCAATTTGTCATAAAAAATGTTTTATTTTAATTTTAAATCTCTAACTCTCTTTTTTGATCAAATTAACAGGTTATTAGTGCAAGAAGGAATGGTAGTTTACTTAATGCAATACAAGTACTCATTGATCTTAATCTTTTAATTAAGAAGGCTTATATATCTTCTGATGGCAAATGGTTCATGGATGGTAAGCTAGTCTGCATTTTCCTTTTGAACTTTTCGATATGACTTTGTGTTATTCTGCTAAATTGGATAAATGCATTTAGTTACATATTAACATTTGGCTATTCAATGTGCAGTTTTCCACATCACTCATCAAAATGGAAGCAAGATAATCGACGAGAACATTTTAAAATATATAGAACAGGTATTGTAAATAATGACTTTAGAACTTATTATTCCACATATACTGTTAATATTGATCTTTAATCTTAATTTTCGGTTGTATTTTGCAACAGTCGCTTGGGAGCATTCATAATGTGAGAACTAATTCCTCAAACGGTCTCACTGCGCTTGAATTATCAGGAACCGATAGAGTTGGTCTTCTGTCGGAGTTGTTTGCCGTACTTGCTGATCTTCAATGTGATGTTGTTGAAGCTAAGGTGTGGACTCACAATGGTCGCATTGCCTCTTTGATCTATGTTAAAGACTGCGATTCTGGATCCACTATTGAGGATTCTCAGAAAATTAAAAAGATTGAAGTGCGTTTAAGAAACGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAGACTTCTGTTTCTATGTCTGTCATGCATAGTGAAAGAAGGCTGCATCAAATGATGTTCGCTGATCGTGACTACGAGAGGACTCCCATTCTCAAGCTTACTTCCGATAACACTGTAGTGACGGTCCAGAATTGGGCAGAAAGGGGCTATTCGGTTGTGAGTGTTCAATGCAAGGATCGAATCAAACTATTATTTGACGTGGTATGCAATTTGACAGACATGGAGTATGTTGTGTTTCATGCGACCATCAACACAAATAGTAACCAAGCTTACTTGGTAATTATTTAACATCCTTTTTTGAAGTTCAGTATATGTTTGCTTAGATTATGTTCTAAGTTTTGTTATTGATATTCAAATCATTAATTACTTTAGGAGTTTTATATAAGACACAAGGATGGCACGCCAATTAGTTCAGAACCAGAGCGACAACGTGTAATTCAATGTTTAAAAGCTTCTGTGGAGAGAAGGGCGTCTGAGGTATATATCTGTTAAATCATATATTTATTATGACCTTTGCTTAAGGAGTGGTCAAGACTGATTAATTGTTAATTGTGTGATTATAGGGTGTTCAACTAAAGTTATGCACAGAAGACAAGCAAGGGCTTCTAGCAGAAGTGATGCGAACCTTCCGAGAGAATGGGCTTAATGTTACAAGAGCTGAGATAACCACCGTAGAAAACATGGCAACAAATGTTTTCTATGTAACAGATGTGACTGGAAAACCAGCTGATCCAACAACCATAGAGTCTGTTAGGCAGAAGATTGGTTCAAGCAATTTAGAAGTGAAGGAGTTACCATTGTTTTATCATCAGAAGACAGAGAGAGAGGATCAAACAGTTGGCATTGGTGGTGCAGTGTTATGGTCTATTGGGAGCCTAGTGAGAAGGAACCTGTATAGTTTGGGATTAATTAAATCATGTTCTTAATGCAGATTCTTATGTAATATAAAATCATATTCTTTGCTTTGTATTTGGGCCTGTGTACATAAAAAGTTTAGAATGATGGAATTTGGTGATAGTTAATAGTAGTTCTAGTTGGTTTGGTAGGTTGTAAGATGAAAGTAATACAGAATAGGTCTTGGTGGCTGATAGACAACTTTTAGGTACAAAATTGGACAGAACAAATTGGGTTCATTGTTCATCTAGGACTTTGGTTATGTGTACATACATACTTATTTTATGGTTATTAATATCAATTTTAGTGGTTGACTGACTTGACTCCATTTTTACATTGAACTCTATCTTCCCTGCACCTTCCTTGGGCTCTACGTTTTGTAATTGCAAAATTTTATTGGATCATTAAAGTTTGCACCATTGAAAGATTTCTATATTATCAATGGGAGTGGTGTGGCATCATTAAAGGGATATATCATTTACTTAAAAATATAATAATTTGGTTTTTAAATAATGTAAAAGAAGCTAACAATATTAAACAAAAACACATTGGAGTATTATGTCTTGGATCAGTGTGAAATATACTTCCAGGAATTAATTAATGAATGAATAACTAAGAACATCAAAATTCCAAATATCTCTCATTGTCATTGGATTGTCATGTAGTTCAAAACAAAATCCAATCCTGCATGCTTCCTCTTTTTCGCATTTCATCCAGAGATAAAGTAGGTTATATATTCATTTTCGATATCACTGTCATGATGACTGATTAGAATAAATGGCTACTACTTGTCATTTGATTGTCTGAGGATGTTGCTATGAAGGTAATGACATTTTGTCCACAAGGAGCTATACGCATTCTATATGCAAGTGGAGTCATTTCAAGAGCCATCATTAATCGGCCTCAAGCGTCTGGAACATTATACACATTGACATATGAGGTGAAGCATTCATGTAATAATCTGAGAGTATTAATAGCATCAATTTTTACTAATTCAATGAACTAACATGGAGTTTACGTGTAGCTTGTTATTCATACGTTGTTTCTATGTGTTTCTTTCAATAATGGAAATTGAATTTCAGGGCATTTATCAAATTCAATCTTTATCTGGCTCGTTCATGCGTAGATCTGGTGGCATGAATGTTTCTTTAGTGGATTTAGATGGAAATGTTGTTGGCGGTCGCGTAGCTGGTCCATTGGTGGCTGCAAGTCCTGTGGCTGTAAGTACCTGGGAAGGGAATAATAGGTCTATAAAATCAAATCAAATATTAAGAGGCTAATAGTCTAATATGTTTTTGACATAATAAAACACCAATTAGAAGGAGGTTTATGTAGTAGTTAATCTCGGATAAGTAAAGTTTATGTAATTCTCACCATTCTTTCCAATGGATTGATATGTATCAGGTAATGGTAGTTACTTTTCTTGCAAGTAAACAACATAAGCAGAAGCTAAAAACACAAAAGAATGATGTAATTTCAACAGTAACGCCAACGTTAGCTGCTCACATGTCTTCTGCTGGTCCAATGCTTAATAATTTGTCGTCTTCATCTTGCTTCCATGGAGATAATCAGTATAGAATCCCTCCCAGCAGTGGCAGATACTAG
Protein sequence

>MS.gene22564.t1

MEWPACTDEYEKLLIRMSTPRVVIDNAVCSTATLVKVISARRNGSLLNAIQVLIDLNLLIKKAYISSDGKWFMDVFHITHQNGSKIIDENILKYIEQSLGSIHNVRTNSSNGLTALELSGTDRVGLLSELFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCDSGSTIEDSQKIKKIEVRLRNVLKGDNDIRSAKTSVSMSVMHSERRLHQMMFADRDYERTPILKLTSDNTVVTVQNWAERGYSVVSVQCKDRIKLLFDVVCNLTDMEYVVFHATINTNSNQAYLEFYIRHKDGTPISSEPERQRVIQCLKASVERRASEGVQLKLCTEDKQGLLAEVMRTFRENGLNVTRAEITTVENMATNVFYVTDVTGKPADPTTIESVRQKIGSSNLEVKELPLFYHQKTEREDQTVGIGGAVLWSIGSLDVAMKVMTFCPQGAIRILYASGVISRAIINRPQASGTLYTLTYEGIYQIQSLSGSFMRRSGGMNVSLVDLDGNVVGGRVAGPLVAASPVAVMVVTFLASKQHKQKLKTQKNDVISTVTPTLAAHMSSAGPMLNNLSSSSCFHGDNQYRIPPSSGRY