Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22786.t1 | XP_003626129.2 | 82.6 | 679 | 84 | 5 | 1 | 646 | 14 | 691 | 2.90E-299 | 1037.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22786.t1 | Q0JNI9 | 33.1 | 417 | 246 | 11 | 212 | 624 | 212 | 599 | 6.0e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22786.t1 | G7KVK4 | 82.6 | 679 | 84 | 5 | 1 | 646 | 14 | 691 | 2.1e-299 | 1037.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050803 | MS.gene22786 | 0.854381 | 1.28E-61 | -1.69E-46 |
| MS.gene050966 | MS.gene22786 | 0.846475 | 2.12E-59 | -1.69E-46 |
| MS.gene053931 | MS.gene22786 | 0.811543 | 6.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATAACACAAATTTAA+AGG | - | 50611:25264-25283 | MS.gene22786:CDS | 10.0% |
| !!! | AAATGTTTTAATGATATATT+TGG | + | 50611:25468-25487 | MS.gene22786:intergenic | 10.0% |
| !! | AAAACAAACTAAAATATATC+CGG | + | 50611:24086-24105 | MS.gene22786:intergenic | 15.0% |
| !!! | AGAATCTTTTAAAAAATCTA+CGG | - | 50611:23429-23448 | MS.gene22786:intron | 15.0% |
| !!! | ATTTTTGTATCAAATCATAT+TGG | - | 50611:24119-24138 | MS.gene22786:intron | 15.0% |
| !!! | GTTTTTGTTTTATTTTGTTA+TGG | - | 50611:25528-25547 | MS.gene22786:intron | 15.0% |
| !!! | TTATTTCTACTTTTCTTAAA+AGG | + | 50611:23816-23835 | MS.gene22786:intergenic | 15.0% |
| !! | AAAGATCTTACACTAATAAT+GGG | - | 50611:24399-24418 | MS.gene22786:CDS | 20.0% |
| !! | AAGCAAAGAAAATTTATTTG+TGG | + | 50611:22784-22803 | MS.gene22786:intergenic | 20.0% |
| !! | AATAAAACAAAAACATCAAC+AGG | + | 50611:25522-25541 | MS.gene22786:intergenic | 20.0% |
| !! | AATTCAAAAGAACAATTTAG+TGG | + | 50611:25430-25449 | MS.gene22786:intergenic | 20.0% |
| !! | ATTGAAGGAAAATTGTAAAA+GGG | + | 50611:24581-24600 | MS.gene22786:intergenic | 20.0% |
| !! | CAGACAATACTTAAAATAAA+CGG | + | 50611:25230-25249 | MS.gene22786:intergenic | 20.0% |
| !! | CATGTTTCATATTCAAATTT+AGG | + | 50611:24193-24212 | MS.gene22786:intergenic | 20.0% |
| !! | GTTTGAATGAAATTATTACA+AGG | - | 50611:22619-22638 | MS.gene22786:intron | 20.0% |
| !! | TAAAGATCTTACACTAATAA+TGG | - | 50611:24398-24417 | MS.gene22786:CDS | 20.0% |
| !!! | AAATCTAATTGATTCAAATG+AGG | + | 50611:22963-22982 | MS.gene22786:intergenic | 20.0% |
| !!! | AATATTTTAGTTAGATGATG+TGG | + | 50611:24310-24329 | MS.gene22786:intergenic | 20.0% |
| !!! | AATCTAATTGATTCAAATGA+GGG | + | 50611:22962-22981 | MS.gene22786:intergenic | 20.0% |
| !!! | ATTTTAAGTATTGTCTGTTT+TGG | - | 50611:25233-25252 | MS.gene22786:CDS | 20.0% |
| !!! | CAATTTTTTTGTTAACTTGT+AGG | - | 50611:23654-23673 | MS.gene22786:intron | 20.0% |
| !!! | CTTTTATCTGAAAATTGTAT+TGG | + | 50611:25372-25391 | MS.gene22786:intergenic | 20.0% |
| !!! | GGATATATTTTAGTTTGTTT+TGG | - | 50611:24085-24104 | MS.gene22786:intron | 20.0% |
| !!! | TAGTTTGTTTTGGTAAAATT+TGG | - | 50611:24095-24114 | MS.gene22786:intron | 20.0% |
| !!! | TTTGAGACTAAAAAATATGT+AGG | - | 50611:25298-25317 | MS.gene22786:CDS | 20.0% |
| !!! | TTTTAAGTATTGTCTGTTTT+GGG | - | 50611:25234-25253 | MS.gene22786:CDS | 20.0% |
| !!! | TTTTTGACTTGATATTTCTT+AGG | - | 50611:24476-24495 | MS.gene22786:CDS | 20.0% |
| ! | AAAATGGGTGAAATTCATTA+CGG | + | 50611:23077-23096 | MS.gene22786:intergenic | 25.0% |
| ! | AAGATCTTACACTAATAATG+GGG | - | 50611:24400-24419 | MS.gene22786:CDS | 25.0% |
| ! | AAGTTTGAGGATTTAGATAA+CGG | - | 50611:22597-22616 | MS.gene22786:intron | 25.0% |
| ! | AATGAAACAAATACAAGGAT+AGG | - | 50611:22573-22592 | MS.gene22786:intron | 25.0% |
| ! | ACAAGTTATGCTTAAAAACA+AGG | - | 50611:25078-25097 | MS.gene22786:CDS | 25.0% |
| ! | ACACAATTTCTAACACTAAT+GGG | + | 50611:22339-22358 | MS.gene22786:intergenic | 25.0% |
| ! | ATGCTAATGAAACAAATACA+AGG | - | 50611:22568-22587 | MS.gene22786:intron | 25.0% |
| ! | CAAGTTATGCTTAAAAACAA+GGG | - | 50611:25079-25098 | MS.gene22786:CDS | 25.0% |
| ! | CACAAGATAATTCAAGAAAT+AGG | + | 50611:23601-23620 | MS.gene22786:intergenic | 25.0% |
| ! | GATTGAAGGAAAATTGTAAA+AGG | + | 50611:24582-24601 | MS.gene22786:intergenic | 25.0% |
| ! | TACACAATTTCTAACACTAA+TGG | + | 50611:22340-22359 | MS.gene22786:intergenic | 25.0% |
| ! | TACATTATCAGTTAACCATA+TGG | + | 50611:24372-24391 | MS.gene22786:intergenic | 25.0% |
| ! | TCAATTAGATTTAGAGAATC+AGG | - | 50611:22971-22990 | MS.gene22786:CDS | 25.0% |
| ! | TGTGAAATATCAAAATTCGA+AGG | + | 50611:24604-24623 | MS.gene22786:intergenic | 25.0% |
| ! | TTAGGTGAGAATAATACAAA+AGG | - | 50611:22995-23014 | MS.gene22786:CDS | 25.0% |
| !! | AAATTTGAAGCGAAAAAATC+TGG | - | 50611:23522-23541 | MS.gene22786:intron | 25.0% |
| !! | TCATCAAAAGTTGATTTAAG+TGG | - | 50611:23217-23236 | MS.gene22786:CDS | 25.0% |
| !! | TTTCATTTCCTAGATTTTTC+TGG | - | 50611:25485-25504 | MS.gene22786:intron | 25.0% |
| !!! | AATTGAAGATTTTGATACCT+CGG | - | 50611:22881-22900 | MS.gene22786:CDS | 25.0% |
| !!! | GATTTTGAAGATGAATCAAT+TGG | - | 50611:23676-23695 | MS.gene22786:intron | 25.0% |
| AAAGCTAATCTTCAGAACAT+TGG | - | 50611:23118-23137 | MS.gene22786:CDS | 30.0% | |
| AACAAATCAAATGTCTATCC+AGG | - | 50611:25111-25130 | MS.gene22786:CDS | 30.0% | |
| AACTCAAACAAATCGTTTCT+GGG | + | 50611:22438-22457 | MS.gene22786:intergenic | 30.0% | |
| AAGGGTCATGATAAATATTC+AGG | - | 50611:22540-22559 | MS.gene22786:intron | 30.0% | |
| AGATTTAGAGAATCAGGTTT+AGG | - | 50611:22977-22996 | MS.gene22786:CDS | 30.0% | |
| ATCAAAATTCGAAGGATTGA+AGG | + | 50611:24596-24615 | MS.gene22786:intergenic | 30.0% | |
| ATGACTTACCAGAAAAATCT+AGG | + | 50611:25496-25515 | MS.gene22786:intergenic | 30.0% | |
| ATTGGAAGTTTGATCAACTT+TGG | + | 50611:23377-23396 | MS.gene22786:intergenic | 30.0% | |
| CATATGCACAAAAACAGAAA+AGG | + | 50611:25173-25192 | MS.gene22786:intergenic | 30.0% | |
| GAAAAAACATCGCGTTATAA+TGG | + | 50611:24638-24657 | MS.gene22786:intergenic | 30.0% | |
| GAACCTGAAGAAAGAAAAAA+AGG | + | 50611:23993-24012 | MS.gene22786:intergenic | 30.0% | |
| TAAGAAAACATTGAAGCACA+TGG | + | 50611:24932-24951 | MS.gene22786:intergenic | 30.0% | |
| TTTACGCAGATTATGACAAT+GGG | - | 50611:24665-24684 | MS.gene22786:CDS | 30.0% | |
| TTTAGTGACTCTCATAAACA+AGG | - | 50611:22831-22850 | MS.gene22786:CDS | 30.0% | |
| ! | AATATTCTTTTCTCGAGAGT+TGG | - | 50611:24344-24363 | MS.gene22786:intron | 30.0% |
| ! | ATTGGATCCTTTAACTTAGA+GGG | + | 50611:25043-25062 | MS.gene22786:intergenic | 30.0% |
| ! | CTTGGAATTTAAGATTTGAC+CGG | - | 50611:24064-24083 | MS.gene22786:intron | 30.0% |
| ! | GTGTTTTTCTCAAGAGATTT+CGG | + | 50611:23319-23338 | MS.gene22786:intergenic | 30.0% |
| ! | TTGACTTGATATTTCTTAGG+CGG | - | 50611:24479-24498 | MS.gene22786:CDS | 30.0% |
| ! | TTTTACGCAGATTATGACAA+TGG | - | 50611:24664-24683 | MS.gene22786:CDS | 30.0% |
| !! | ATAGAATGTTGATTCTCACT+TGG | - | 50611:24046-24065 | MS.gene22786:intron | 30.0% |
| !! | ATTGAAGATTTTGATACCTC+GGG | - | 50611:22882-22901 | MS.gene22786:CDS | 30.0% |
| !! | CTTTTCTTAAAAGGCACAAA+TGG | + | 50611:23807-23826 | MS.gene22786:intergenic | 30.0% |
| !!! | TGACCTTTTTTTCTTTCTTC+AGG | - | 50611:23987-24006 | MS.gene22786:CDS | 30.0% |
| AAGTGCACAATCTATCTGAA+AGG | - | 50611:23758-23777 | MS.gene22786:intron | 35.0% | |
| ACTTAAAATAAACGGTTCCG+CGG | + | 50611:25222-25241 | MS.gene22786:intergenic | 35.0% | |
| ACTTACACAGATGATTGATC+TGG | + | 50611:22307-22326 | MS.gene22786:intergenic | 35.0% | |
| AGACCAAATCCTCAATTGTT+TGG | - | 50611:24872-24891 | MS.gene22786:CDS | 35.0% | |
| AGAGAAAGAATACTTGCAGT+TGG | + | 50611:24557-24576 | MS.gene22786:intergenic | 35.0% | |
| AGTCCATCTCATACTCTTAA+GGG | - | 50611:22522-22541 | MS.gene22786:intron | 35.0% | |
| AGTGCACAATCTATCTGAAA+GGG | - | 50611:23759-23778 | MS.gene22786:intron | 35.0% | |
| ATTATGACAATGGGAAGTCA+TGG | - | 50611:24674-24693 | MS.gene22786:CDS | 35.0% | |
| ATTGACCATGCACTAAAATC+TGG | + | 50611:22476-22495 | MS.gene22786:intergenic | 35.0% | |
| CAAACTTCCAATCAAGTTCT+TGG | - | 50611:23385-23404 | MS.gene22786:CDS | 35.0% | |
| CAACTCAAACAAATCGTTTC+TGG | + | 50611:22439-22458 | MS.gene22786:intergenic | 35.0% | |
| CACTATTTACATCGTAGTTC+TGG | - | 50611:22714-22733 | MS.gene22786:intron | 35.0% | |
| CATAAGACTTTGTCAGAACA+AGG | + | 50611:25340-25359 | MS.gene22786:intergenic | 35.0% | |
| CTTACACAGATGATTGATCT+GGG | + | 50611:22306-22325 | MS.gene22786:intergenic | 35.0% | |
| CTTGAATTATCTTGTGAGTG+TGG | - | 50611:23605-23624 | MS.gene22786:intron | 35.0% | |
| GACCAAATCCTCAATTGTTT+GGG | - | 50611:24873-24892 | MS.gene22786:CDS | 35.0% | |
| GAGAAATCTAGCATAGAAAC+AGG | + | 50611:24439-24458 | MS.gene22786:intergenic | 35.0% | |
| GCTGTAGAATTAAATGCTAG+TGG | - | 50611:24980-24999 | MS.gene22786:intron | 35.0% | |
| GGTGTTAAAAGAACTGATCA+TGG | - | 50611:23697-23716 | MS.gene22786:intron | 35.0% | |
| GGTTTCTTACATGAACTATC+TGG | - | 50611:22735-22754 | MS.gene22786:intron | 35.0% | |
| TACAAGGATAGGAAAGTTTG+AGG | - | 50611:22584-22603 | MS.gene22786:intron | 35.0% | |
| TGGACTTGAACAATCAAAAG+TGG | - | 50611:25571-25590 | MS.gene22786:intron | 35.0% | |
| TGTGAGTTCACATTTGACAT+TGG | + | 50611:25061-25080 | MS.gene22786:intergenic | 35.0% | |
| TTAAATGCTAGTGGAACAGA+AGG | - | 50611:24989-25008 | MS.gene22786:intron | 35.0% | |
| TTACACAGATGATTGATCTG+GGG | + | 50611:22305-22324 | MS.gene22786:intergenic | 35.0% | |
| TTCAGATAGATTGTGCACTT+CGG | + | 50611:23758-23777 | MS.gene22786:intergenic | 35.0% | |
| ! | AAACAAGGTATCCTTTCCAA+GGG | - | 50611:22846-22865 | MS.gene22786:CDS | 35.0% |
| ! | CAATGTATGGCTGAACTTTT+TGG | + | 50611:23250-23269 | MS.gene22786:intergenic | 35.0% |
| ! | CAGAAACGATTTGTTTGAGT+TGG | - | 50611:22437-22456 | MS.gene22786:intron | 35.0% |
| ! | CATTGGATCCTTTAACTTAG+AGG | + | 50611:25044-25063 | MS.gene22786:intergenic | 35.0% |
| ! | GCTTCAATGTTTTCTTATCC+CGG | - | 50611:24935-24954 | MS.gene22786:intron | 35.0% |
| ! | TAAACAAGGTATCCTTTCCA+AGG | - | 50611:22845-22864 | MS.gene22786:CDS | 35.0% |
| ! | TCATCTTGACTTGAAGAAAC+AGG | + | 50611:22645-22664 | MS.gene22786:intergenic | 35.0% |
| ! | TCTGACAAAGTCTTATGACA+GGG | - | 50611:25343-25362 | MS.gene22786:CDS | 35.0% |
| ! | TTCTGACAAAGTCTTATGAC+AGG | - | 50611:25342-25361 | MS.gene22786:CDS | 35.0% |
| !! | AATGACCAGATTTTAGTGCA+TGG | - | 50611:22468-22487 | MS.gene22786:intron | 35.0% |
| !! | ACGATTTGTTTGAGTTGGTT+TGG | - | 50611:22442-22461 | MS.gene22786:intron | 35.0% |
| !! | GCTATTTCTGTTGTGTGAAT+GGG | + | 50611:24220-24239 | MS.gene22786:intergenic | 35.0% |
| !! | TCAACTTTTGATGATTCGCA+AGG | + | 50611:23211-23230 | MS.gene22786:intergenic | 35.0% |
| !! | TGCTATTTCTGTTGTGTGAA+TGG | + | 50611:24221-24240 | MS.gene22786:intergenic | 35.0% |
| !!! | AAGCTCAAGTTTTGTTTGGA+TGG | - | 50611:24160-24179 | MS.gene22786:CDS | 35.0% |
| !!! | ACTGAAGCTCAAGTTTTGTT+TGG | - | 50611:24156-24175 | MS.gene22786:CDS | 35.0% |
| AAAAGAACTGATCATGGACG+AGG | - | 50611:23703-23722 | MS.gene22786:intron | 40.0% | |
| AACAAAGATGCAGCTGTGAT+AGG | - | 50611:23178-23197 | MS.gene22786:CDS | 40.0% | |
| AACATTGAAGCACATGGCAT+TGG | + | 50611:24926-24945 | MS.gene22786:intergenic | 40.0% | |
| AATTGCAAGTGAAGAACCCT+TGG | + | 50611:22865-22884 | MS.gene22786:intergenic | 40.0% | |
| ACAGCTGATGAGTTCATAAC+AGG | + | 50611:24965-24984 | MS.gene22786:intergenic | 40.0% | |
| ACTAATGGAAACCGTGGAAT+CGG | - | 50611:25012-25031 | MS.gene22786:CDS | 40.0% | |
| ACTCATACCGAATTGCAACA+AGG | - | 50611:23963-23982 | MS.gene22786:CDS | 40.0% | |
| ACTCTCACCAAGAACTTGAT+TGG | + | 50611:23395-23414 | MS.gene22786:intergenic | 40.0% | |
| AGCCCAAACAATTGAGGATT+TGG | + | 50611:24878-24897 | MS.gene22786:intergenic | 40.0% | |
| AGGTCAACCTTGTTGCAATT+CGG | + | 50611:23973-23992 | MS.gene22786:intergenic | 40.0% | |
| AGGTGAGTTCCTTGAAATTG+AGG | + | 50611:24806-24825 | MS.gene22786:intergenic | 40.0% | |
| ATTTGCATGGCAACACTCAT+GGG | + | 50611:24770-24789 | MS.gene22786:intergenic | 40.0% | |
| CAAAGGTTTCAAATCAACCC+TGG | + | 50611:23293-23312 | MS.gene22786:intergenic | 40.0% | |
| CATACATTGTCATCAGTCAG+TGG | - | 50611:23261-23280 | MS.gene22786:intron | 40.0% | |
| CGACGGCATATTTAACTGAT+TGG | + | 50611:22921-22940 | MS.gene22786:intergenic | 40.0% | |
| GAGTCCATCTCATACTCTTA+AGG | - | 50611:22521-22540 | MS.gene22786:intron | 40.0% | |
| GATACATCTTCTTTGCAAGC+AGG | + | 50611:23355-23374 | MS.gene22786:intergenic | 40.0% | |
| GCGAAAAAATCTGGACTATG+AGG | - | 50611:23531-23550 | MS.gene22786:intron | 40.0% | |
| GGTGAAATTCATTACGGTTG+AGG | + | 50611:23071-23090 | MS.gene22786:intergenic | 40.0% | |
| TAAAGCTTCAATGCTGGATG+AGG | - | 50611:24503-24522 | MS.gene22786:CDS | 40.0% | |
| TAGTGGAACAGAAGGACTAA+TGG | - | 50611:24997-25016 | MS.gene22786:intron | 40.0% | |
| TCATTACGGTTGAGGAAGAT+GGG | + | 50611:23063-23082 | MS.gene22786:intergenic | 40.0% | |
| TCCATTGCACAATTCAACCA+AGG | + | 50611:22687-22706 | MS.gene22786:intergenic | 40.0% | |
| TCTCAAGAAGCAAACAAACC+TGG | + | 50611:25132-25151 | MS.gene22786:intergenic | 40.0% | |
| TGACATTGATGCAACAACGA+CGG | + | 50611:22938-22957 | MS.gene22786:intergenic | 40.0% | |
| TTCATTACGGTTGAGGAAGA+TGG | + | 50611:23064-23083 | MS.gene22786:intergenic | 40.0% | |
| TTTCTTCACAATGTGCATGC+TGG | + | 50611:23030-23049 | MS.gene22786:intergenic | 40.0% | |
| ! | ATGAGTGTTGCCATGCAAAT+GGG | - | 50611:24770-24789 | MS.gene22786:CDS | 40.0% |
| ! | CACTGACTGATGACAATGTA+TGG | + | 50611:23263-23282 | MS.gene22786:intergenic | 40.0% |
| ! | TGACCCTTAAGAGTATGAGA+TGG | + | 50611:22528-22547 | MS.gene22786:intergenic | 40.0% |
| !! | AAGTATTGTCTGTTTTGGGC+AGG | - | 50611:25238-25257 | MS.gene22786:CDS | 40.0% |
| !! | AGTATTGTCTGTTTTGGGCA+GGG | - | 50611:25239-25258 | MS.gene22786:CDS | 40.0% |
| !! | ATTTGATGACGATGATGCCT+TGG | - | 50611:22667-22686 | MS.gene22786:intron | 40.0% |
| !! | CAGGGTTGATTTGAAACCTT+TGG | - | 50611:23291-23310 | MS.gene22786:intron | 40.0% |
| !! | GTCATTTTCCAGCAAAGCAT+GGG | + | 50611:25609-25628 | MS.gene22786:intergenic | 40.0% |
| !!! | TGGACTCGTTTTAGCTCTAT+TGG | + | 50611:22508-22527 | MS.gene22786:intergenic | 40.0% |
| !!! | TGTCATTTTCCAGCAAAGCA+TGG | + | 50611:25610-25629 | MS.gene22786:intergenic | 40.0% |
| AGAAGGACTAATGGAAACCG+TGG | - | 50611:25006-25025 | MS.gene22786:intron | 45.0% | |
| AGTCCAGATGTATGTGCAAC+AGG | + | 50611:24830-24849 | MS.gene22786:intergenic | 45.0% | |
| CAAGTGAAGAACCCTTGGAA+AGG | + | 50611:22860-22879 | MS.gene22786:intergenic | 45.0% | |
| CAATTGTTTGGGCTTCAAGC+TGG | - | 50611:24884-24903 | MS.gene22786:CDS | 45.0% | |
| CAGATGTATGTGCAACAGGA+AGG | + | 50611:24826-24845 | MS.gene22786:intergenic | 45.0% | |
| CATTTGCATGGCAACACTCA+TGG | + | 50611:24771-24790 | MS.gene22786:intergenic | 45.0% | |
| CTTCCTGTTGCACATACATC+TGG | - | 50611:24824-24843 | MS.gene22786:CDS | 45.0% | |
| GAAGAGACAGGATCAATGAG+AGG | - | 50611:23923-23942 | MS.gene22786:intron | 45.0% | |
| GCAACACTCATGGGTGAAAA+GGG | + | 50611:24761-24780 | MS.gene22786:intergenic | 45.0% | |
| GCCTTGGTTGAATTGTGCAA+TGG | - | 50611:22683-22702 | MS.gene22786:intron | 45.0% | |
| GCTTGAAGCCCAAACAATTG+AGG | + | 50611:24884-24903 | MS.gene22786:intergenic | 45.0% | |
| GGCAGCAAAGTCATTTGTAG+TGG | + | 50611:22763-22782 | MS.gene22786:intergenic | 45.0% | |
| GGCTTCACCCTCTAAGTTAA+AGG | - | 50611:25033-25052 | MS.gene22786:CDS | 45.0% | |
| GGTCTGCATTGAATCACACA+AGG | + | 50611:22417-22436 | MS.gene22786:intergenic | 45.0% | |
| GGTTTCAAATCAACCCTGGA+TGG | + | 50611:23289-23308 | MS.gene22786:intergenic | 45.0% | |
| TAGTGTGAAGCAACAACTGG+TGG | - | 50611:25551-25570 | MS.gene22786:intron | 45.0% | |
| TATATCTGACCTCAAGTCCG+CGG | - | 50611:25202-25221 | MS.gene22786:CDS | 45.0% | |
| TCAAGAGATTTCGGCTCCAA+AGG | + | 50611:23310-23329 | MS.gene22786:intergenic | 45.0% | |
| TCATCAAGACCAGAACGTGT+GGG | - | 50611:23148-23167 | MS.gene22786:CDS | 45.0% | |
| TCCTCTGTTTGCTCTGACAA+TGG | - | 50611:23469-23488 | MS.gene22786:intron | 45.0% | |
| TGAGTTCATAACAGGCTCTC+CGG | + | 50611:24957-24976 | MS.gene22786:intergenic | 45.0% | |
| TGGACTATGAGGATTCTGAG+TGG | - | 50611:23542-23561 | MS.gene22786:intron | 45.0% | |
| TTCATCAAGACCAGAACGTG+TGG | - | 50611:23147-23166 | MS.gene22786:CDS | 45.0% | |
| ! | AGCCGCAGGTTTTGCAAAAT+GGG | + | 50611:23092-23111 | MS.gene22786:intergenic | 45.0% |
| ! | ATTCCTGCTGGTAACGTCAT+AGG | + | 50611:24710-24729 | MS.gene22786:intergenic | 45.0% |
| ! | CACCCATTTTGCAAAACCTG+CGG | - | 50611:23087-23106 | MS.gene22786:CDS | 45.0% |
| ! | CATGAGTGTTGCCATGCAAA+TGG | - | 50611:24769-24788 | MS.gene22786:CDS | 45.0% |
| ! | TAGCCGCAGGTTTTGCAAAA+TGG | + | 50611:23093-23112 | MS.gene22786:intergenic | 45.0% |
| ! | TGAGTGTTGCCATGCAAATG+GGG | - | 50611:24771-24790 | MS.gene22786:CDS | 45.0% |
| ! | TGGTAGTGTGAAGCAACAAC+TGG | - | 50611:25548-25567 | MS.gene22786:intron | 45.0% |
| ! | TTAGCTTTCACAATAGCCGC+AGG | + | 50611:23106-23125 | MS.gene22786:intergenic | 45.0% |
| !! | ACTTGCTGCTTTACATGGGA+TGG | - | 50611:24847-24866 | MS.gene22786:CDS | 45.0% |
| !! | CTGGACTTGCTGCTTTACAT+GGG | - | 50611:24843-24862 | MS.gene22786:CDS | 45.0% |
| !! | GTATTGTCTGTTTTGGGCAG+GGG | - | 50611:25240-25259 | MS.gene22786:CDS | 45.0% |
| !! | TCTGGACTTGCTGCTTTACA+TGG | - | 50611:24842-24861 | MS.gene22786:CDS | 45.0% |
| AGGAATGCAGCACATGCATG+CGG | - | 50611:24724-24743 | MS.gene22786:CDS | 50.0% | |
| ATGCCTATGACGTTACCAGC+AGG | - | 50611:24704-24723 | MS.gene22786:CDS | 50.0% | |
| CTTGGTGAGAGTCGCAGAAA+AGG | - | 50611:23403-23422 | MS.gene22786:CDS | 50.0% | |
| GAGTTCATAACAGGCTCTCC+GGG | + | 50611:24956-24975 | MS.gene22786:intergenic | 50.0% | |
| GCCATTGTCAGAGCAAACAG+AGG | + | 50611:23473-23492 | MS.gene22786:intergenic | 50.0% | |
| GGCAACACTCATGGGTGAAA+AGG | + | 50611:24762-24781 | MS.gene22786:intergenic | 50.0% | |
| GGCGGATAAAGCTTCAATGC+TGG | - | 50611:24497-24516 | MS.gene22786:CDS | 50.0% | |
| GTTGCCATGCAAATGGGGTT+GGG | - | 50611:24776-24795 | MS.gene22786:CDS | 50.0% | |
| TCATGCAGAGACGAAGAGAC+AGG | - | 50611:23911-23930 | MS.gene22786:intron | 50.0% | |
| TCTCGAGAGTTGGCACCATA+TGG | - | 50611:24354-24373 | MS.gene22786:intron | 50.0% | |
| TGTTGCCATGCAAATGGGGT+TGG | - | 50611:24775-24794 | MS.gene22786:CDS | 50.0% | |
| TTCTTTGCTCCCACACGTTC+TGG | + | 50611:23160-23179 | MS.gene22786:intergenic | 50.0% | |
| TTGCCATGCAAATGGGGTTG+GGG | - | 50611:24777-24796 | MS.gene22786:CDS | 50.0% | |
| TTTGGGCTTCAAGCTGGTCA+GGG | - | 50611:24890-24909 | MS.gene22786:CDS | 50.0% | |
| ! | GATCATGGACGAGGCGTTAT+GGG | - | 50611:23712-23731 | MS.gene22786:intron | 50.0% |
| ! | TGATCATGGACGAGGCGTTA+TGG | - | 50611:23711-23730 | MS.gene22786:intron | 50.0% |
| !! | TTGGGGGTGCCTCAATTTCA+AGG | - | 50611:24794-24813 | MS.gene22786:CDS | 50.0% |
| !!! | TGGTGCTAGTTTTAGTCCCG+AGG | + | 50611:22901-22920 | MS.gene22786:intergenic | 50.0% |
| ATCAGTCAGTGGAGCCATCC+AGG | - | 50611:23272-23291 | MS.gene22786:intron | 55.0% | |
| CGATAGTGCCCATGCTTTGC+TGG | - | 50611:25598-25617 | MS.gene22786:intron | 55.0% | |
| GTTTGGGCTTCAAGCTGGTC+AGG | - | 50611:24889-24908 | MS.gene22786:CDS | 55.0% | |
| TAAACGGTTCCGCGGACTTG+AGG | + | 50611:25214-25233 | MS.gene22786:intergenic | 55.0% | |
| TCAGTCAGTGGAGCCATCCA+GGG | - | 50611:23273-23292 | MS.gene22786:intron | 55.0% | |
| TGCATGTGCTGCATTCCTGC+TGG | + | 50611:24722-24741 | MS.gene22786:intergenic | 55.0% | |
| TGCCATGCAAATGGGGTTGG+GGG | - | 50611:24778-24797 | MS.gene22786:CDS | 55.0% | |
| ! | AGAGGGTGAAGCCGATTCCA+CGG | + | 50611:25026-25045 | MS.gene22786:intergenic | 55.0% |
| CACCCCCAACCCCATTTGCA+TGG | + | 50611:24783-24802 | MS.gene22786:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50611 | gene | 22266 | 25667 | 22266 | ID=MS.gene22786 |
| 50611 | mRNA | 22266 | 25667 | 22266 | ID=MS.gene22786.t1;Parent=MS.gene22786 |
| 50611 | exon | 25613 | 25667 | 25613 | ID=MS.gene22786.t1.exon1;Parent=MS.gene22786.t1 |
| 50611 | CDS | 25613 | 25667 | 25613 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 25009 | 25499 | 25009 | ID=MS.gene22786.t1.exon2;Parent=MS.gene22786.t1 |
| 50611 | CDS | 25009 | 25499 | 25009 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 24360 | 24946 | 24360 | ID=MS.gene22786.t1.exon3;Parent=MS.gene22786.t1 |
| 50611 | CDS | 24360 | 24946 | 24360 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 24153 | 24257 | 24153 | ID=MS.gene22786.t1.exon4;Parent=MS.gene22786.t1 |
| 50611 | CDS | 24153 | 24257 | 24153 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 23949 | 24014 | 23949 | ID=MS.gene22786.t1.exon5;Parent=MS.gene22786.t1 |
| 50611 | CDS | 23949 | 24014 | 23949 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 23370 | 23435 | 23370 | ID=MS.gene22786.t1.exon6;Parent=MS.gene22786.t1 |
| 50611 | CDS | 23370 | 23435 | 23370 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 22801 | 23259 | 22801 | ID=MS.gene22786.t1.exon7;Parent=MS.gene22786.t1 |
| 50611 | CDS | 22801 | 23259 | 22801 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| 50611 | exon | 22266 | 22379 | 22266 | ID=MS.gene22786.t1.exon8;Parent=MS.gene22786.t1 |
| 50611 | CDS | 22266 | 22379 | 22266 | ID=cds.MS.gene22786.t1;Parent=MS.gene22786.t1 |
| Gene Sequence |
| Protein sequence |
