Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22787.t1 | ABD33215.1 | 97.4 | 305 | 7 | 1 | 1 | 305 | 133 | 436 | 1.20E-112 | 416.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22787.t1 | Q9UKJ3 | 42.3 | 137 | 78 | 1 | 54 | 189 | 29 | 165 | 1.2e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22787.t1 | G7KWE6 | 97.4 | 305 | 7 | 1 | 1 | 305 | 135 | 438 | 8.3e-113 | 416.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene22787 | 0.806367 | 8.51E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene22787 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene22787 | 0.808098 | 3.66E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene22787 | 0.806446 | 8.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22787.t1 | MTR_7g111520 | 97.705 | 305 | 6 | 1 | 1 | 305 | 135 | 438 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22787.t1 | AT5G26610 | 62.541 | 307 | 95 | 6 | 10 | 305 | 4 | 301 | 1.54e-116 | 338 |
| MS.gene22787.t1 | AT5G26610 | 62.541 | 307 | 95 | 6 | 10 | 305 | 4 | 301 | 1.54e-116 | 338 |
| MS.gene22787.t1 | AT5G26610 | 62.541 | 307 | 95 | 6 | 10 | 305 | 4 | 301 | 1.54e-116 | 338 |
Find 0 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATTAAAATAATTTAAC+AGG | + | 50597:12044-12063 | MS.gene22787:intergenic | 10.0% |
| !! | TATTAATTAATAATGATGAA+TGG | + | 50597:9825-9844 | MS.gene22787:intergenic | 10.0% |
| !!! | ATTATTTTTTTATAAAACCA+GGG | + | 50597:10979-10998 | MS.gene22787:intergenic | 10.0% |
| !! | ATAAATTGTACATGTTTATA+TGG | + | 50597:10136-10155 | MS.gene22787:intergenic | 15.0% |
| !! | ATATTATATATACCCATATA+TGG | - | 50597:11143-11162 | MS.gene22787:intron | 15.0% |
| !! | TATTATATATACCCATATAT+GGG | - | 50597:11144-11163 | MS.gene22787:intron | 15.0% |
| !!! | CATTATTTTTTTATAAAACC+AGG | + | 50597:10980-10999 | MS.gene22787:intergenic | 15.0% |
| !! | AAAATAATTTAACAGGCAAA+AGG | + | 50597:12037-12056 | MS.gene22787:intergenic | 20.0% |
| !! | AATTGAAATTGAAATTGTTC+AGG | - | 50597:9858-9877 | MS.gene22787:intron | 20.0% |
| !! | ACTAGATATTTAATCTATGA+AGG | + | 50597:10172-10191 | MS.gene22787:intergenic | 20.0% |
| !! | ATATACTCATAAGAATGAAA+AGG | + | 50597:12791-12810 | MS.gene22787:intergenic | 20.0% |
| !! | ATATTTAATCTATGAAGGTA+AGG | + | 50597:10167-10186 | MS.gene22787:intergenic | 20.0% |
| !! | ATTTGTTTACAATTGAGATT+GGG | - | 50597:10904-10923 | MS.gene22787:CDS | 20.0% |
| !! | CAAATATAAATCAATTATCC+AGG | + | 50597:10889-10908 | MS.gene22787:intergenic | 20.0% |
| !! | TAATGGAAATATTCATAGTT+TGG | - | 50597:10604-10623 | MS.gene22787:CDS | 20.0% |
| !! | TATTTGTTTACAATTGAGAT+TGG | - | 50597:10903-10922 | MS.gene22787:CDS | 20.0% |
| !! | TTTAAGCTTCTTCAAAAAAT+GGG | - | 50597:9997-10016 | MS.gene22787:intron | 20.0% |
| !!! | AAAATCATATAGTAGTTTTG+AGG | - | 50597:11463-11482 | MS.gene22787:intron | 20.0% |
| !!! | AACATCAATAATTTTGCATT+AGG | + | 50597:11896-11915 | MS.gene22787:intergenic | 20.0% |
| !!! | AATGAACAATTATTTCTCTT+TGG | - | 50597:10643-10662 | MS.gene22787:CDS | 20.0% |
| !!! | TCTATTTTCGTAAATAACAA+AGG | + | 50597:10694-10713 | MS.gene22787:intergenic | 20.0% |
| !!! | TTAATTGTAATGGAACATTA+TGG | - | 50597:11074-11093 | MS.gene22787:intron | 20.0% |
| !!! | TTTTAAGCTTCTTCAAAAAA+TGG | - | 50597:9996-10015 | MS.gene22787:intron | 20.0% |
| ! | AAAAAAACTCGATATTGAGT+TGG | - | 50597:11364-11383 | MS.gene22787:intron | 25.0% |
| ! | AACAACCTCTTATATTCTAT+TGG | + | 50597:10554-10573 | MS.gene22787:intergenic | 25.0% |
| ! | ACTACCCTAAAATATAACAA+AGG | + | 50597:10217-10236 | MS.gene22787:intergenic | 25.0% |
| ! | ATTGTTGAACCAATAAAATC+TGG | - | 50597:11266-11285 | MS.gene22787:CDS | 25.0% |
| ! | CACATTACTTCTTCTAATAT+TGG | - | 50597:9973-9992 | MS.gene22787:intron | 25.0% |
| ! | CTTTCATTTCATTATACACA+TGG | + | 50597:10085-10104 | MS.gene22787:intergenic | 25.0% |
| ! | TTGCACTTACTTAATTGTAA+TGG | - | 50597:11064-11083 | MS.gene22787:intron | 25.0% |
| ! | TTGTTGAACCAATAAAATCT+GGG | - | 50597:11267-11286 | MS.gene22787:CDS | 25.0% |
| ! | TTTGCATCATTATGATCTAT+AGG | - | 50597:12625-12644 | MS.gene22787:CDS | 25.0% |
| !! | CATTTTATCTAACACTAACT+TGG | - | 50597:11823-11842 | MS.gene22787:intron | 25.0% |
| !! | TCAATAATTTTGCATTAGGT+AGG | + | 50597:11892-11911 | MS.gene22787:intergenic | 25.0% |
| !!! | GACACCTTTGTTATATTTTA+GGG | - | 50597:10210-10229 | MS.gene22787:intron | 25.0% |
| !!! | TTTTTTAAGTTGAGTTGATC+CGG | + | 50597:12500-12519 | MS.gene22787:intergenic | 25.0% |
| AAAAAATAACCGCATCAAAC+CGG | - | 50597:12514-12533 | MS.gene22787:intron | 30.0% | |
| AAACCAATTCAAAAAGGATC+AGG | - | 50597:9779-9798 | MS.gene22787:CDS | 30.0% | |
| AAAGAAATGAAGGAAATGCA+TGG | - | 50597:11932-11951 | MS.gene22787:intron | 30.0% | |
| AAAGGAAAACAAGTCTGAAA+GGG | + | 50597:10676-10695 | MS.gene22787:intergenic | 30.0% | |
| AACCAAAAAGGAAGATATCA+TGG | + | 50597:12161-12180 | MS.gene22787:intergenic | 30.0% | |
| AACTAAATGATGAAGTCTAG+TGG | + | 50597:12430-12449 | MS.gene22787:intergenic | 30.0% | |
| ACCCATAGCCAAAATAAAAT+GGG | + | 50597:12075-12094 | MS.gene22787:intergenic | 30.0% | |
| ATATATACCCATATATGGGA+GGG | - | 50597:11148-11167 | MS.gene22787:intron | 30.0% | |
| ATATTCATAGTTTGGCGAAA+TGG | - | 50597:10612-10631 | MS.gene22787:CDS | 30.0% | |
| ATCAGAATCAAGTCAACAAA+AGG | + | 50597:11850-11869 | MS.gene22787:intergenic | 30.0% | |
| ATGCAATCAAATCCCAAATA+GGG | + | 50597:10847-10866 | MS.gene22787:intergenic | 30.0% | |
| CAATGTTTAAAAGATCAGAC+AGG | + | 50597:12668-12687 | MS.gene22787:intergenic | 30.0% | |
| CTACACCAATAGAATATAAG+AGG | - | 50597:10546-10565 | MS.gene22787:intron | 30.0% | |
| TATATATACCCATATATGGG+AGG | - | 50597:11147-11166 | MS.gene22787:intron | 30.0% | |
| TATCATGGTAAGAGTAAAGT+TGG | + | 50597:12146-12165 | MS.gene22787:intergenic | 30.0% | |
| TATGCAATCAAATCCCAAAT+AGG | + | 50597:10848-10867 | MS.gene22787:intergenic | 30.0% | |
| TATTCATAGTTTGGCGAAAT+GGG | - | 50597:10613-10632 | MS.gene22787:CDS | 30.0% | |
| TCAGAATCAAGTCAACAAAA+GGG | + | 50597:11849-11868 | MS.gene22787:intergenic | 30.0% | |
| TGATCCGGTTATTAAAACAT+TGG | + | 50597:12485-12504 | MS.gene22787:intergenic | 30.0% | |
| TTAAGTAAGTGCAAATACAG+AGG | + | 50597:11058-11077 | MS.gene22787:intergenic | 30.0% | |
| ! | ATATATGCATGCCTTTTTAC+CGG | - | 50597:11541-11560 | MS.gene22787:intron | 30.0% |
| ! | TACCATGATATCTTCCTTTT+TGG | - | 50597:12156-12175 | MS.gene22787:intron | 30.0% |
| ! | TAGTAGTTTGTCATAAGCAA+CGG | - | 50597:10188-10207 | MS.gene22787:intron | 30.0% |
| ! | TATTTGGGATTTGATTGCAT+AGG | - | 50597:10847-10866 | MS.gene22787:CDS | 30.0% |
| ! | TATTTTTCCTTCTACTACTG+TGG | - | 50597:12389-12408 | MS.gene22787:intron | 30.0% |
| ! | TCTCTAATCCCAGATTTTAT+TGG | + | 50597:11278-11297 | MS.gene22787:intergenic | 30.0% |
| !! | AGCGAAATACTTTGAAGTTT+GGG | - | 50597:12308-12327 | MS.gene22787:intron | 30.0% |
| !! | GGACACCTTTGTTATATTTT+AGG | - | 50597:10209-10228 | MS.gene22787:intron | 30.0% |
| !! | TTGTTGACTTGATTCTGATT+TGG | - | 50597:11851-11870 | MS.gene22787:intron | 30.0% |
| !!! | AGCACCAATGTTTTAATAAC+CGG | - | 50597:12478-12497 | MS.gene22787:intron | 30.0% |
| !!! | ATTTTATTTTGGCTATGGGT+GGG | - | 50597:12075-12094 | MS.gene22787:intron | 30.0% |
| !!! | CTCAAAGAACACTAGTTTTA+GGG | - | 50597:10574-10593 | MS.gene22787:intron | 30.0% |
| !!! | TCTCAAAGAACACTAGTTTT+AGG | - | 50597:10573-10592 | MS.gene22787:intron | 30.0% |
| AAAACCAGTTGAGTCAATTG+CGG | + | 50597:12591-12610 | MS.gene22787:intergenic | 35.0% | |
| AAACCGAGGTGAAAGAAATT+CGG | - | 50597:11702-11721 | MS.gene22787:intron | 35.0% | |
| AACAGGCAAAAGGATACATT+TGG | + | 50597:12027-12046 | MS.gene22787:intergenic | 35.0% | |
| ACAATTGAGATTGGGATAGT+TGG | - | 50597:10912-10931 | MS.gene22787:CDS | 35.0% | |
| ACAGGCAAAAGGATACATTT+GGG | + | 50597:12026-12045 | MS.gene22787:intergenic | 35.0% | |
| AGCTTCTTCAAAAAATGGGT+TGG | - | 50597:10001-10020 | MS.gene22787:intron | 35.0% | |
| AGTAGTAAGCATGATTCTTC+TGG | - | 50597:9747-9766 | MS.gene22787:CDS | 35.0% | |
| CAAAATAAAATGGGCAAGCA+AGG | + | 50597:12066-12085 | MS.gene22787:intergenic | 35.0% | |
| CAAAGGAAAACAAGTCTGAA+AGG | + | 50597:10677-10696 | MS.gene22787:intergenic | 35.0% | |
| CAAGCAATACAAATTGGCAA+TGG | - | 50597:11751-11770 | MS.gene22787:intron | 35.0% | |
| CAATTCAAAAAGGATCAGGT+TGG | - | 50597:9783-9802 | MS.gene22787:intron | 35.0% | |
| CACCCATAGCCAAAATAAAA+TGG | + | 50597:12076-12095 | MS.gene22787:intergenic | 35.0% | |
| CGTGCACAATTTGAAAATTC+AGG | - | 50597:11652-11671 | MS.gene22787:intron | 35.0% | |
| CTGCAACAAGCAATACAAAT+TGG | - | 50597:11745-11764 | MS.gene22787:intron | 35.0% | |
| GCTATCGTTTCCAAATATAG+AGG | + | 50597:12891-12910 | MS.gene22787:intergenic | 35.0% | |
| GTTCAAAACATGATACCAGT+TGG | + | 50597:12367-12386 | MS.gene22787:intergenic | 35.0% | |
| GTTCTTATGATCACAATCAC+AGG | - | 50597:11792-11811 | MS.gene22787:intron | 35.0% | |
| TCAAGATCTTCCAAAGTTGA+TGG | + | 50597:11586-11605 | MS.gene22787:intergenic | 35.0% | |
| TCAATTATCCAGGAAGAAGA+CGG | + | 50597:10879-10898 | MS.gene22787:intergenic | 35.0% | |
| TCATAAGGAACCATCAACTT+TGG | - | 50597:11573-11592 | MS.gene22787:intron | 35.0% | |
| TGAAAAGGAGCGAGTATTTA+AGG | + | 50597:12776-12795 | MS.gene22787:intergenic | 35.0% | |
| TGAGCAAAAAATTCAAACCG+AGG | - | 50597:11688-11707 | MS.gene22787:intron | 35.0% | |
| TGCAATCAAATCCCAAATAG+GGG | + | 50597:10846-10865 | MS.gene22787:intergenic | 35.0% | |
| TGGCATTAAGGAAACCAAAA+AGG | + | 50597:12173-12192 | MS.gene22787:intergenic | 35.0% | |
| TTATGATCACAATCACAGGA+AGG | - | 50597:11796-11815 | MS.gene22787:intron | 35.0% | |
| TTCCTTATGACATACCAATC+CGG | + | 50597:11563-11582 | MS.gene22787:intergenic | 35.0% | |
| TTGCAAAATTGTGTGCAGAA+TGG | - | 50597:10255-10274 | MS.gene22787:intron | 35.0% | |
| ! | AAAACCACAGTGTTATTCAG+TGG | - | 50597:10393-10412 | MS.gene22787:CDS | 35.0% |
| ! | CAACCTGATCCTTTTTGAAT+TGG | + | 50597:9785-9804 | MS.gene22787:intergenic | 35.0% |
| ! | CACCAAAGTCAAAGTACTTT+CGG | + | 50597:11183-11202 | MS.gene22787:intergenic | 35.0% |
| ! | GAACAAAGAAGCATGAAAGA+AGG | - | 50597:10469-10488 | MS.gene22787:intron | 35.0% |
| ! | TGCACACAATTTTGCAATTG+TGG | + | 50597:10252-10271 | MS.gene22787:intergenic | 35.0% |
| ! | TGTAAAGCATCTTCAAGTAC+TGG | + | 50597:12731-12750 | MS.gene22787:intergenic | 35.0% |
| ! | TTCCTGCAGTTTTTATTACC+TGG | - | 50597:11610-11629 | MS.gene22787:intron | 35.0% |
| !! | AAAAATGGGTTGGAAAGGAA+AGG | - | 50597:10011-10030 | MS.gene22787:intron | 35.0% |
| !! | AAAACTCGATATTGAGTTGG+AGG | - | 50597:11367-11386 | MS.gene22787:intron | 35.0% |
| !! | AAAATGGGTTGGAAAGGAAA+GGG | - | 50597:10012-10031 | MS.gene22787:intron | 35.0% |
| !! | AAGTTTGGGTTTTCTGCTAA+AGG | - | 50597:12322-12341 | MS.gene22787:intron | 35.0% |
| !! | CAGCGAAATACTTTGAAGTT+TGG | - | 50597:12307-12326 | MS.gene22787:intron | 35.0% |
| !! | CCTTTTTGAATTGGTTTCTC+CGG | + | 50597:9776-9795 | MS.gene22787:intergenic | 35.0% |
| !! | CTTCAAAAAATGGGTTGGAA+AGG | - | 50597:10006-10025 | MS.gene22787:intron | 35.0% |
| !! | CTTGCTTGCCCATTTTATTT+TGG | - | 50597:12064-12083 | MS.gene22787:intron | 35.0% |
| !! | CTTTTTGAATTGGTTTCTCC+GGG | + | 50597:9775-9794 | MS.gene22787:intergenic | 35.0% |
| !!! | AGAACACTAGTTTTAGGGTT+CGG | - | 50597:10579-10598 | MS.gene22787:intron | 35.0% |
| !!! | CAATATCGAGTTTTTTTCGC+TGG | + | 50597:11361-11380 | MS.gene22787:intergenic | 35.0% |
| !!! | CATTTTATTTTGGCTATGGG+TGG | - | 50597:12074-12093 | MS.gene22787:intron | 35.0% |
| !!! | GCCCATTTTATTTTGGCTAT+GGG | - | 50597:12071-12090 | MS.gene22787:intron | 35.0% |
| !!! | TGCCCATTTTATTTTGGCTA+TGG | - | 50597:12070-12089 | MS.gene22787:intron | 35.0% |
| AAAGAAGCAAAATCTCCCAG+TGG | - | 50597:12865-12884 | MS.gene22787:CDS | 40.0% | |
| AAAGCCACTGAATAACACTG+TGG | + | 50597:10400-10419 | MS.gene22787:intergenic | 40.0% | |
| ACATGAAGAAATGAATGCCG+CGG | - | 50597:10496-10515 | MS.gene22787:intron | 40.0% | |
| AGCAGCTATATGCCAGTATT+AGG | + | 50597:10296-10315 | MS.gene22787:intergenic | 40.0% | |
| AGTAGCAGTCTTAGATTCAG+AGG | + | 50597:12269-12288 | MS.gene22787:intergenic | 40.0% | |
| ATAGCGGTATAGTATGTAGC+AGG | + | 50597:10797-10816 | MS.gene22787:intergenic | 40.0% | |
| CACCAGGTAATAAAAACTGC+AGG | + | 50597:11615-11634 | MS.gene22787:intergenic | 40.0% | |
| CCGGAGAAACCAATTCAAAA+AGG | - | 50597:9773-9792 | MS.gene22787:CDS | 40.0% | |
| CTGCTGCTATTGCTAAGTAT+GGG | - | 50597:10311-10330 | MS.gene22787:CDS | 40.0% | |
| CTTCCGAATTTCTTTCACCT+CGG | + | 50597:11708-11727 | MS.gene22787:intergenic | 40.0% | |
| GACATACCAATCCGGTAAAA+AGG | + | 50597:11555-11574 | MS.gene22787:intergenic | 40.0% | |
| GACTTTCTGAACATGTATGC+AGG | - | 50597:11242-11261 | MS.gene22787:CDS | 40.0% | |
| GATTAGAGATCCAAGACTAG+GGG | - | 50597:11289-11308 | MS.gene22787:CDS | 40.0% | |
| GCAGCGTTTCAAAGAAATGA+AGG | - | 50597:11922-11941 | MS.gene22787:intron | 40.0% | |
| GGATTAGAGATCCAAGACTA+GGG | - | 50597:11288-11307 | MS.gene22787:CDS | 40.0% | |
| GGTATAGTATGTAGCAGGAT+GGG | + | 50597:10792-10811 | MS.gene22787:intergenic | 40.0% | |
| TGCTGCTATTGCTAAGTATG+GGG | - | 50597:10312-10331 | MS.gene22787:CDS | 40.0% | |
| TTCCAAATATAGAGGCCACT+GGG | + | 50597:12883-12902 | MS.gene22787:intergenic | 40.0% | |
| TTTCAAATTGTGCACGAAGC+AGG | + | 50597:11648-11667 | MS.gene22787:intergenic | 40.0% | |
| TTTCCAAATATAGAGGCCAC+TGG | + | 50597:12884-12903 | MS.gene22787:intergenic | 40.0% | |
| ! | AAAGCATCCCTCCCATATAT+GGG | + | 50597:11158-11177 | MS.gene22787:intergenic | 40.0% |
| ! | ACTGGGAGATTTTGCTTCTT+TGG | + | 50597:12866-12885 | MS.gene22787:intergenic | 40.0% |
| ! | CTGCAGTTTTTATTACCTGG+TGG | - | 50597:11613-11632 | MS.gene22787:intron | 40.0% |
| ! | TCCAGATCAACGTTTTCAGT+TGG | + | 50597:9925-9944 | MS.gene22787:intergenic | 40.0% |
| !! | ACTTTGAAGAGCATTAGCTG+GGG | + | 50597:10955-10974 | MS.gene22787:intergenic | 40.0% |
| !! | ATACCGCTATCCCATTTTTG+TGG | - | 50597:10807-10826 | MS.gene22787:intron | 40.0% |
| !! | ATCAGCACTGATTGGCATTA+AGG | + | 50597:12185-12204 | MS.gene22787:intergenic | 40.0% |
| !! | ATTTGAGCATCAGCACTGAT+TGG | + | 50597:12193-12212 | MS.gene22787:intergenic | 40.0% |
| !! | CACTTTGAAGAGCATTAGCT+GGG | + | 50597:10956-10975 | MS.gene22787:intergenic | 40.0% |
| !! | TACCGGATTGGTATGTCATA+AGG | - | 50597:11558-11577 | MS.gene22787:intron | 40.0% |
| !! | TCAGTTGGCCTTTGATTTCT+GGG | + | 50597:9910-9929 | MS.gene22787:intergenic | 40.0% |
| !! | TTCAGTTGGCCTTTGATTTC+TGG | + | 50597:9911-9930 | MS.gene22787:intergenic | 40.0% |
| !!! | AGTTTTAGGGTTCGGTCTAA+TGG | - | 50597:10587-10606 | MS.gene22787:intron | 40.0% |
| AAATGTGCTCTGCGGAAAAG+GGG | + | 50597:12822-12841 | MS.gene22787:intergenic | 45.0% | |
| ACAGACTCCACAGTAGTAGA+AGG | + | 50597:12399-12418 | MS.gene22787:intergenic | 45.0% | |
| AGTATTAGGCATCACAGCAG+AGG | + | 50597:10282-10301 | MS.gene22787:intergenic | 45.0% | |
| CAAATGTGCTCTGCGGAAAA+GGG | + | 50597:12823-12842 | MS.gene22787:intergenic | 45.0% | |
| CGAGGTGAAAGAAATTCGGA+AGG | - | 50597:11706-11725 | MS.gene22787:intron | 45.0% | |
| CGGTATAGTATGTAGCAGGA+TGG | + | 50597:10793-10812 | MS.gene22787:intergenic | 45.0% | |
| CTGATGCTCAAATGCAGCAA+CGG | - | 50597:12200-12219 | MS.gene22787:intron | 45.0% | |
| CTTCAACTGCAACAAGAGTC+TGG | - | 50597:12223-12242 | MS.gene22787:intron | 45.0% | |
| GATTCAGAGGAAACTGAAGC+TGG | + | 50597:12256-12275 | MS.gene22787:intergenic | 45.0% | |
| GCAGCGTCAAGAAAGAGAAT+TGG | - | 50597:11991-12010 | MS.gene22787:intron | 45.0% | |
| GCCAACTGAAAACGTTGATC+TGG | - | 50597:9921-9940 | MS.gene22787:intron | 45.0% | |
| GCTGCTGCTATTGCTAAGTA+TGG | - | 50597:10310-10329 | MS.gene22787:CDS | 45.0% | |
| GGGATTAGAGATCCAAGACT+AGG | - | 50597:11287-11306 | MS.gene22787:CDS | 45.0% | |
| GGTCTTGGCAAACATGAACA+AGG | - | 50597:10033-10052 | MS.gene22787:intron | 45.0% | |
| GTTCTATGTTGGCGACGTAA+GGG | - | 50597:12097-12116 | MS.gene22787:intron | 45.0% | |
| TACTGGACTAAGCAAGCACT+GGG | + | 50597:12714-12733 | MS.gene22787:intergenic | 45.0% | |
| TCAAATCCCAAATAGGGGCA+CGG | + | 50597:10841-10860 | MS.gene22787:intergenic | 45.0% | |
| TCTGCTGTGATGCCTAATAC+TGG | - | 50597:10281-10300 | MS.gene22787:CDS | 45.0% | |
| TGCTACTGCACTTACAGATC+AGG | - | 50597:12282-12301 | MS.gene22787:intron | 45.0% | |
| TGGCCACAAAAATGGGATAG+CGG | + | 50597:10813-10832 | MS.gene22787:intergenic | 45.0% | |
| TGTTCAGGCATACGATGATG+AGG | - | 50597:9873-9892 | MS.gene22787:intron | 45.0% | |
| TTCGCTTGCCCAGAAATCAA+AGG | - | 50597:9899-9918 | MS.gene22787:intron | 45.0% | |
| TTGACACCAAATGTGCTCTG+CGG | + | 50597:12830-12849 | MS.gene22787:intergenic | 45.0% | |
| ! | ATGGATTACCGATGGACCAA+AGG | - | 50597:9711-9730 | MS.gene22787:CDS | 45.0% |
| ! | CATTTTCTCAAACCTGCACC+TGG | - | 50597:11497-11516 | MS.gene22787:intron | 45.0% |
| ! | TAATGCTCTTCAAAGTGCCC+TGG | - | 50597:10959-10978 | MS.gene22787:intron | 45.0% |
| ! | TGAACCGCAATTGACTCAAC+TGG | - | 50597:12584-12603 | MS.gene22787:CDS | 45.0% |
| ! | TGCATGCCTTTTTACCGGAT+TGG | - | 50597:11546-11565 | MS.gene22787:intron | 45.0% |
| ! | TGTTCCTTTTCTGCACGTGA+AGG | + | 50597:10454-10473 | MS.gene22787:intergenic | 45.0% |
| !! | CGCCGAAAGTACTTTGACTT+TGG | - | 50597:11178-11197 | MS.gene22787:intron | 45.0% |
| !! | GAAAGCATCCCTCCCATATA+TGG | + | 50597:11159-11178 | MS.gene22787:intergenic | 45.0% |
| !! | GCACTTTGAAGAGCATTAGC+TGG | + | 50597:10957-10976 | MS.gene22787:intergenic | 45.0% |
| !! | TATTGAGTTGGAGGAGACAG+AGG | - | 50597:11376-11395 | MS.gene22787:intron | 45.0% |
| AAACCACCCAGCAATCTGGA+CGG | + | 50597:12565-12584 | MS.gene22787:intergenic | 50.0% | |
| AAATGCATGGCAGCAGTAGC+CGG | - | 50597:11945-11964 | MS.gene22787:intron | 50.0% | |
| AATAACCGCATCAAACCGGC+CGG | - | 50597:12518-12537 | MS.gene22787:intron | 50.0% | |
| AATGTGCTCTGCGGAAAAGG+GGG | + | 50597:12821-12840 | MS.gene22787:intergenic | 50.0% | |
| AGAGATCCAAGACTAGGGGT+CGG | - | 50597:11293-11312 | MS.gene22787:CDS | 50.0% | |
| AGAGGAGAATGTGAGGAAGC+GGG | - | 50597:11394-11413 | MS.gene22787:intron | 50.0% | |
| AGCATGATTCTTCTGGTGCC+CGG | - | 50597:9754-9773 | MS.gene22787:CDS | 50.0% | |
| AGCTCCTTCACGTGCAGAAA+AGG | - | 50597:10447-10466 | MS.gene22787:intron | 50.0% | |
| AGGAGACAGAGGAGAATGTG+AGG | - | 50597:11387-11406 | MS.gene22787:intron | 50.0% | |
| ATATGCTGCCTTCTGCTACC+AGG | + | 50597:11518-11537 | MS.gene22787:intergenic | 50.0% | |
| CAGAGGAGAATGTGAGGAAG+CGG | - | 50597:11393-11412 | MS.gene22787:intron | 50.0% | |
| CCAAATGTGCTCTGCGGAAA+AGG | + | 50597:12824-12843 | MS.gene22787:intergenic | 50.0% | |
| CCCAATTCAACCGGTTGAAC+CGG | + | 50597:12540-12559 | MS.gene22787:intergenic | 50.0% | |
| CCGGTTCAACCGGTTGAATT+GGG | - | 50597:12537-12556 | MS.gene22787:intron | 50.0% | |
| CTCCCAGTGGCCTCTATATT+TGG | - | 50597:12878-12897 | MS.gene22787:CDS | 50.0% | |
| GATACCAGTTGGACACACCT+TGG | + | 50597:12356-12375 | MS.gene22787:intergenic | 50.0% | |
| GGTTCTATGTTGGCGACGTA+AGG | - | 50597:12096-12115 | MS.gene22787:intron | 50.0% | |
| GGTTGGAAAGGAAAGGGTCT+TGG | - | 50597:10018-10037 | MS.gene22787:intron | 50.0% | |
| GTACTGGACTAAGCAAGCAC+TGG | + | 50597:12715-12734 | MS.gene22787:intergenic | 50.0% | |
| GTGTAGCCTACTTGCCATTG+CGG | + | 50597:10532-10551 | MS.gene22787:intergenic | 50.0% | |
| GTTCAAACCACCCAGCAATC+TGG | + | 50597:12569-12588 | MS.gene22787:intergenic | 50.0% | |
| TGCTGCTACCTTTGGTCCAT+CGG | + | 50597:9722-9741 | MS.gene22787:intergenic | 50.0% | |
| TGGACGGTTCCCAATTCAAC+CGG | + | 50597:12549-12568 | MS.gene22787:intergenic | 50.0% | |
| TGGCTTTCTGACCACAACGT+GGG | - | 50597:10413-10432 | MS.gene22787:CDS | 50.0% | |
| ! | CAAATCCCAAATAGGGGCAC+GGG | + | 50597:10840-10859 | MS.gene22787:intergenic | 50.0% |
| ! | CCTTTTCCGCAGAGCACATT+TGG | - | 50597:12821-12840 | MS.gene22787:intron | 50.0% |
| ! | GCTATGGGTGGGTTCTATGT+TGG | - | 50597:12086-12105 | MS.gene22787:intron | 50.0% |
| ! | GGGTGACTGGCCACAAAAAT+GGG | + | 50597:10820-10839 | MS.gene22787:intergenic | 50.0% |
| !! | CTCGCTTTTGCCTATCATCC+CGG | + | 50597:11967-11986 | MS.gene22787:intergenic | 50.0% |
| !! | TGCTAAAGGCACTGCTTCCA+AGG | - | 50597:12336-12355 | MS.gene22787:intron | 50.0% |
| AACCTGCACCTGGTAGCAGA+AGG | - | 50597:11507-11526 | MS.gene22787:intron | 55.0% | |
| AATGCATGGCAGCAGTAGCC+GGG | - | 50597:11946-11965 | MS.gene22787:intron | 55.0% | |
| ACTGCTGCTGCTGCTACCTT+TGG | + | 50597:9730-9749 | MS.gene22787:intergenic | 55.0% | |
| AGTCACCCGTGCCCCTATTT+GGG | - | 50597:10832-10851 | MS.gene22787:CDS | 55.0% | |
| ATTCAACCGGTTGAACCGGC+CGG | + | 50597:12536-12555 | MS.gene22787:intergenic | 55.0% | |
| ATTGCGGTGCATCTTCTCCG+CGG | + | 50597:10516-10535 | MS.gene22787:intergenic | 55.0% | |
| GATGCACCGCAATGGCAAGT+AGG | - | 50597:10523-10542 | MS.gene22787:intron | 55.0% | |
| GCTTCCAAGGTGTGTCCAAC+TGG | - | 50597:12349-12368 | MS.gene22787:intron | 55.0% | |
| GGCTTTCTGACCACAACGTG+GGG | - | 50597:10414-10433 | MS.gene22787:CDS | 55.0% | |
| GGTGTCTTCCGTCTTCTTCC+TGG | - | 50597:10868-10887 | MS.gene22787:CDS | 55.0% | |
| GTGGCTTTCTGACCACAACG+TGG | - | 50597:10412-10431 | MS.gene22787:CDS | 55.0% | |
| TGGGAACCGTCCAGATTGCT+GGG | - | 50597:12556-12575 | MS.gene22787:intron | 55.0% | |
| TTGGGAACCGTCCAGATTGC+TGG | - | 50597:12555-12574 | MS.gene22787:intron | 55.0% | |
| ! | ATCAAACCGGCCGGTTCAAC+CGG | - | 50597:12527-12546 | MS.gene22787:intron | 55.0% |
| ! | CGGGTGACTGGCCACAAAAA+TGG | + | 50597:10821-10840 | MS.gene22787:intergenic | 55.0% |
| ! | GCCGGTTCAACCGGTTGAAT+TGG | - | 50597:12536-12555 | MS.gene22787:intron | 55.0% |
| !! | GGACTAAGCAAGCACTGGGT+TGG | + | 50597:12710-12729 | MS.gene22787:intergenic | 55.0% |
| !! | TTGAACCGGCCGGTTTGATG+CGG | + | 50597:12526-12545 | MS.gene22787:intergenic | 55.0% |
| AGCAGGCAGAAGAAGCCACC+AGG | + | 50597:11631-11650 | MS.gene22787:intergenic | 60.0% | |
| CAGTCACCCGTGCCCCTATT+TGG | - | 50597:10831-10850 | MS.gene22787:CDS | 60.0% | |
| CTGCACGTGAAGGAGCTCAC+CGG | + | 50597:10444-10463 | MS.gene22787:intergenic | 60.0% | |
| GAACCGTCCAGATTGCTGGG+TGG | - | 50597:12559-12578 | MS.gene22787:intron | 60.0% | |
| GACCACAACGTGGGGTTTGC+CGG | - | 50597:10422-10441 | MS.gene22787:intron | 60.0% | |
| GCAGCAGTAGCCGGGATGAT+AGG | - | 50597:11954-11973 | MS.gene22787:intron | 60.0% | |
| GCGGAGAAGATGCACCGCAA+TGG | - | 50597:10515-10534 | MS.gene22787:intron | 60.0% | |
| GGAGAATGTGAGGAAGCGGG+AGG | - | 50597:11397-11416 | MS.gene22787:intron | 60.0% | |
| TGCCTTCTGCTACCAGGTGC+AGG | + | 50597:11512-11531 | MS.gene22787:intergenic | 60.0% | |
| TGCTTGCCGACCCCTAGTCT+TGG | + | 50597:11302-11321 | MS.gene22787:intergenic | 60.0% | |
| ! | CAAATAGGGGCACGGGTGAC+TGG | + | 50597:10833-10852 | MS.gene22787:intergenic | 60.0% |
| CACCGGCAAACCCCACGTTG+TGG | + | 50597:10427-10446 | MS.gene22787:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50597 | gene | 9711 | 12922 | 9711 | ID=MS.gene22787 |
| 50597 | mRNA | 9711 | 12922 | 9711 | ID=MS.gene22787.t1;Parent=MS.gene22787 |
| 50597 | exon | 12833 | 12922 | 12833 | ID=MS.gene22787.t1.exon1;Parent=MS.gene22787.t1 |
| 50597 | CDS | 12833 | 12922 | 12833 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 12579 | 12753 | 12579 | ID=MS.gene22787.t1.exon2;Parent=MS.gene22787.t1 |
| 50597 | CDS | 12579 | 12753 | 12579 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 11215 | 11369 | 11215 | ID=MS.gene22787.t1.exon3;Parent=MS.gene22787.t1 |
| 50597 | CDS | 11215 | 11369 | 11215 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 10816 | 10959 | 10816 | ID=MS.gene22787.t1.exon4;Parent=MS.gene22787.t1 |
| 50597 | CDS | 10816 | 10959 | 10816 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 10604 | 10707 | 10604 | ID=MS.gene22787.t1.exon5;Parent=MS.gene22787.t1 |
| 50597 | CDS | 10604 | 10707 | 10604 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 10276 | 10435 | 10276 | ID=MS.gene22787.t1.exon6;Parent=MS.gene22787.t1 |
| 50597 | CDS | 10276 | 10435 | 10276 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| 50597 | exon | 9711 | 9800 | 9711 | ID=MS.gene22787.t1.exon7;Parent=MS.gene22787.t1 |
| 50597 | CDS | 9711 | 9800 | 9711 | ID=cds.MS.gene22787.t1;Parent=MS.gene22787.t1 |
| Gene Sequence |
| Protein sequence |
