AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22792.t1 MTR_7g112580 99.265 544 4 0 1 544 1 544 0.0 1132
MS.gene22792.t1 MTR_4g087980 47.581 496 223 8 68 542 37 516 8.84e-159 463
MS.gene22792.t1 MTR_2g044880 47.699 478 222 8 80 542 61 525 2.63e-158 462
MS.gene22792.t1 MTR_3g091380 45.920 527 256 10 40 543 78 598 8.77e-156 458
MS.gene22792.t1 MTR_7g108905 41.187 556 304 8 1 543 12 557 2.81e-150 442
MS.gene22792.t1 MTR_1g008140 48.319 476 208 9 99 543 140 608 2.75e-149 442
MS.gene22792.t1 MTR_4g087970 43.912 501 246 10 64 543 32 518 1.49e-143 424
MS.gene22792.t1 MTR_4g025730 49.666 449 188 10 102 542 91 509 6.32e-143 422
MS.gene22792.t1 MTR_4g025690 49.339 454 189 10 100 542 90 513 2.64e-138 410
MS.gene22792.t1 MTR_8g042900 41.571 522 282 7 34 542 70 581 1.14e-136 409
MS.gene22792.t1 MTR_8g104655 45.070 497 235 10 68 542 61 541 5.02e-136 405
MS.gene22792.t1 MTR_3g010780 43.121 487 240 6 73 542 108 574 1.77e-135 405
MS.gene22792.t1 MTR_1g083520 44.304 474 230 8 89 542 69 528 5.37e-135 402
MS.gene22792.t1 MTR_7g050980 45.275 455 218 8 102 542 118 555 4.47e-133 398
MS.gene22792.t1 MTR_8g023310 44.111 467 234 6 98 542 128 589 5.31e-133 399
MS.gene22792.t1 MTR_7g050870 41.651 521 261 13 44 542 55 554 3.12e-131 394
MS.gene22792.t1 MTR_1g054880 44.731 465 227 8 106 542 96 558 7.65e-130 390
MS.gene22792.t1 MTR_2g044810 42.017 476 249 8 76 542 77 534 1.40e-129 389
MS.gene22792.t1 MTR_4g025670 43.827 486 224 11 78 542 32 489 5.03e-129 385
MS.gene22792.t1 MTR_1g088020 44.325 467 228 8 106 542 91 555 6.43e-128 385
MS.gene22792.t1 MTR_8g104645 53.846 338 143 3 218 542 35 372 3.97e-127 377
MS.gene22792.t1 MTR_7g050950 42.035 521 258 16 44 542 55 553 9.25e-126 379
MS.gene22792.t1 MTR_4g124520 43.590 429 217 6 127 542 105 521 2.98e-125 377
MS.gene22792.t1 MTR_3g010770 42.213 488 241 7 95 544 93 577 5.12e-125 379
MS.gene22792.t1 MTR_8g042910 43.182 484 230 10 98 542 135 612 3.72e-124 377
MS.gene22792.t1 MTR_7g108875 44.421 466 228 9 106 542 101 564 9.36e-124 375
MS.gene22792.t1 MTR_1g088225 43.683 467 229 9 106 542 91 553 5.85e-122 370
MS.gene22792.t1 MTR_7g053360 44.270 445 218 8 109 542 102 527 2.60e-121 367
MS.gene22792.t1 MTR_3g008640 47.433 409 189 7 145 542 134 527 5.53e-121 366
MS.gene22792.t1 MTR_8g023150 42.209 507 272 8 44 538 81 578 8.00e-121 368
MS.gene22792.t1 MTR_3g008720 47.188 409 190 7 145 542 134 527 5.68e-120 364
MS.gene22792.t1 MTR_3g033690 47.073 410 189 8 145 542 133 526 7.37e-120 363
MS.gene22792.t1 MTR_1g086190 38.230 531 287 13 40 543 48 564 1.53e-119 364
MS.gene22792.t1 MTR_4g035980 43.860 456 230 9 99 542 98 539 2.08e-119 363
MS.gene22792.t1 MTR_3g008700 46.472 411 194 7 143 542 132 527 2.31e-119 362
MS.gene22792.t1 MTR_7g108890 44.037 436 198 9 144 542 136 562 1.31e-117 359
MS.gene22792.t1 MTR_1g083490 35.888 535 317 10 23 538 44 571 4.70e-114 350
MS.gene22792.t1 MTR_1g083470 34.177 553 341 10 3 538 20 566 4.83e-114 350
MS.gene22792.t1 MTR_1g083500 34.177 553 341 10 3 538 20 566 4.83e-114 350
MS.gene22792.t1 MTR_1g083510 35.271 499 292 7 72 541 86 582 6.98e-114 350
MS.gene22792.t1 MTR_7g108900 41.614 471 238 11 106 543 95 561 1.13e-113 349
MS.gene22792.t1 MTR_1g086210 36.961 533 294 11 44 542 45 569 1.75e-113 348
MS.gene22792.t1 MTR_7g112590 37.302 504 284 9 69 544 86 585 1.03e-112 347
MS.gene22792.t1 MTR_4g005180 36.719 512 300 9 44 538 49 553 3.09e-112 345
MS.gene22792.t1 MTR_4g005170 36.914 512 299 9 44 538 67 571 3.66e-112 347
MS.gene22792.t1 MTR_4g124550 38.618 492 275 10 69 542 111 593 3.50e-110 341
MS.gene22792.t1 MTR_0458s0030 56.786 280 107 3 272 542 40 314 1.44e-109 330
MS.gene22792.t1 MTR_1g088040 56.786 280 107 3 272 542 40 314 1.44e-109 330
MS.gene22792.t1 MTR_2g044660 36.796 568 286 13 39 544 78 634 8.54e-109 338
MS.gene22792.t1 MTR_8g104580 40.040 497 227 12 68 542 53 500 2.45e-107 330
MS.gene22792.t1 MTR_2g436040 34.429 517 298 10 44 539 47 543 1.40e-105 329
MS.gene22792.t1 MTR_7g110560 34.035 570 319 16 3 542 7 549 3.02e-104 324
MS.gene22792.t1 MTR_4g120280 33.966 527 315 10 37 541 56 571 3.49e-102 320
MS.gene22792.t1 MTR_4g120290 32.836 536 331 8 26 541 45 571 2.47e-101 317
MS.gene22792.t1 MTR_7g110440 33.945 545 318 10 30 542 32 566 1.07e-98 310
MS.gene22792.t1 MTR_2g436050 33.397 521 321 9 37 541 53 563 1.11e-98 310
MS.gene22792.t1 MTR_3g095920 33.391 578 313 13 1 541 21 563 3.72e-97 306
MS.gene22792.t1 MTR_7g110490 35.110 544 315 11 30 543 32 567 1.32e-96 305
MS.gene22792.t1 MTR_7g110510 35.110 544 315 11 30 543 32 567 1.32e-96 305
MS.gene22792.t1 MTR_8g093460 33.979 568 321 13 7 544 10 553 8.37e-95 300
MS.gene22792.t1 MTR_2g044810 52.590 251 109 2 301 542 216 465 1.37e-92 291
MS.gene22792.t1 MTR_0618s0020 54.185 227 95 1 325 542 2 228 2.81e-85 264
MS.gene22792.t1 MTR_7g110420 33.880 549 311 14 30 537 32 569 5.90e-82 267
MS.gene22792.t1 MTR_7g110430 32.402 537 303 10 30 542 32 532 1.75e-81 265
MS.gene22792.t1 MTR_8g088610 40.774 336 178 7 218 539 45 373 2.09e-80 256
MS.gene22792.t1 MTR_2g105560 41.639 305 156 4 247 542 48 339 2.88e-75 242
MS.gene22792.t1 MTR_5g083620 36.873 339 194 6 219 542 23 356 8.10e-74 239
MS.gene22792.t1 MTR_0458s0010 34.423 459 248 11 106 542 91 518 1.87e-72 240
MS.gene22792.t1 MTR_7g107180 41.158 311 162 5 242 542 8 307 2.28e-71 231
MS.gene22792.t1 MTR_7g111560 32.692 520 304 15 43 542 63 556 3.99e-70 235
MS.gene22792.t1 MTR_6g024165 36.778 329 178 8 216 533 27 336 2.71e-58 197
MS.gene22792.t1 MTR_6g088810 33.333 381 227 11 172 531 3 377 4.82e-57 195
MS.gene22792.t1 MTR_1g086540 36.213 301 172 6 243 531 52 344 1.18e-56 193
MS.gene22792.t1 MTR_6g012800 37.413 286 159 5 243 515 8 286 2.21e-55 189
MS.gene22792.t1 MTR_2g039530 40.594 303 157 10 217 509 30 319 5.26e-55 189
MS.gene22792.t1 MTR_8g102380 35.473 296 172 5 249 531 88 377 1.77e-52 183
MS.gene22792.t1 MTR_7g011530 34.545 275 162 3 243 504 8 277 1.33e-48 171
MS.gene22792.t1 MTR_7g102600 33.446 296 187 4 243 531 101 393 1.98e-48 173
MS.gene22792.t1 MTR_7g092780 32.542 295 186 5 247 531 96 387 3.25e-47 169
MS.gene22792.t1 MTR_6g042660 34.601 263 158 5 247 504 43 296 4.68e-47 167
MS.gene22792.t1 MTR_5g093970 33.677 291 187 4 242 531 44 329 4.63e-46 165
MS.gene22792.t1 MTR_5g012600 32.915 319 192 7 232 534 50 362 1.93e-45 164
MS.gene22792.t1 MTR_6g042690 34.432 273 160 5 242 504 40 303 2.67e-45 162
MS.gene22792.t1 MTR_8g102380 36.667 240 136 3 249 475 88 324 3.84e-44 159
MS.gene22792.t1 MTR_5g095490 32.323 297 183 5 247 531 67 357 1.39e-43 159
MS.gene22792.t1 MTR_1g033050 33.684 285 173 6 232 504 4 284 4.86e-43 156
MS.gene22792.t1 MTR_4g124740 32.890 301 173 9 243 531 56 339 1.40e-41 153
MS.gene22792.t1 MTR_2g033970 29.097 299 194 6 243 532 58 347 4.15e-41 152
MS.gene22792.t1 MTR_5g083590 29.206 315 163 6 238 542 4 268 3.34e-40 147
MS.gene22792.t1 MTR_5g088300 31.633 294 182 5 242 531 38 316 1.08e-36 139
MS.gene22792.t1 MTR_2g436600 27.703 296 193 8 243 532 57 337 2.51e-36 138
MS.gene22792.t1 MTR_4g074290 29.618 314 203 7 226 531 58 361 4.51e-35 135
MS.gene22792.t1 MTR_2g073390 28.889 315 204 8 226 531 58 361 2.79e-34 133
MS.gene22792.t1 MTR_8g036225 30.147 272 172 5 243 504 35 298 1.02e-32 128
MS.gene22792.t1 MTR_5g088290 30.556 288 190 3 242 526 49 329 2.05e-32 127
MS.gene22792.t1 MTR_4g051810 29.866 298 197 5 236 531 30 317 6.21e-32 125
MS.gene22792.t1 MTR_5g088280 29.965 287 190 4 242 525 40 318 3.62e-31 124
MS.gene22792.t1 MTR_0009s0350 28.014 282 192 5 226 501 58 334 4.17e-31 124
MS.gene22792.t1 MTR_0009s0340 28.014 282 192 5 226 501 58 334 4.17e-31 124
MS.gene22792.t1 MTR_2g436070 26.349 315 218 7 2 312 17 321 1.18e-30 123
MS.gene22792.t1 MTR_6g025590 30.653 199 119 4 210 400 29 216 6.92e-27 109
MS.gene22792.t1 MTR_0408s0030 43.182 88 50 0 417 504 36 123 5.49e-21 90.1
MS.gene22792.t1 MTR_6g024200 33.537 164 96 4 369 531 125 276 3.83e-18 85.1
MS.gene22792.t1 MTR_7g108790 30.128 156 106 3 40 194 34 187 3.03e-17 80.5
MS.gene22792.t1 MTR_4g035870 39.216 102 53 3 99 195 96 193 6.76e-15 73.9
MS.gene22792.t1 MTR_4g035880 39.604 101 52 3 99 194 96 192 6.89e-15 73.9
MS.gene22792.t1 MTR_7g102580 45.349 86 37 2 315 395 73 153 1.31e-14 72.0
MS.gene22792.t1 MTR_4g130790 27.854 219 137 8 264 473 48 254 2.83e-14 73.6
MS.gene22792.t1 MTR_4g035905 38.182 110 55 4 94 194 87 192 2.16e-13 69.3
MS.gene22792.t1 MTR_1g088540 29.921 127 87 2 69 194 15 140 4.69e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22792.t1 AT3G05620 62.157 547 186 6 9 544 7 543 0.0 699
MS.gene22792.t1 AT4G33220 50.612 490 213 6 79 542 37 523 8.51e-171 494
MS.gene22792.t1 AT3G43270 49.582 478 228 5 76 542 50 525 3.74e-167 484
MS.gene22792.t1 AT4G33220 53.086 405 166 4 159 542 1 402 9.26e-152 441
MS.gene22792.t1 AT5G53370 46.217 489 238 7 72 543 106 586 6.75e-151 445
MS.gene22792.t1 AT5G53370 46.217 489 238 7 72 543 142 622 2.50e-150 445
MS.gene22792.t1 AT3G49220 43.954 521 265 6 40 543 87 597 1.57e-147 437
MS.gene22792.t1 AT3G49220 43.954 521 265 6 40 543 132 642 8.02e-147 437
MS.gene22792.t1 AT2G45220 43.063 555 253 16 2 542 6 511 3.60e-137 407
MS.gene22792.t1 AT1G23200 47.346 471 211 8 98 542 95 554 1.34e-136 407
MS.gene22792.t1 AT1G11580 44.420 448 226 5 102 538 118 553 4.00e-132 396
MS.gene22792.t1 AT4G02300 41.767 498 258 8 62 542 50 532 5.15e-132 395
MS.gene22792.t1 AT1G11580 44.420 448 226 5 102 538 139 574 9.13e-132 396
MS.gene22792.t1 AT3G05610 39.394 528 275 11 40 542 58 565 4.32e-131 397
MS.gene22792.t1 AT5G27870 37.838 518 295 6 40 542 57 562 1.02e-129 395
MS.gene22792.t1 AT2G26440 41.085 516 278 9 44 542 41 547 1.58e-128 386
MS.gene22792.t1 AT1G53830 44.731 465 231 6 102 542 125 587 2.09e-128 387
MS.gene22792.t1 AT2G43050 43.813 493 241 10 63 544 51 518 7.72e-128 384
MS.gene22792.t1 AT4G02320 40.400 500 250 7 73 542 37 518 1.46e-127 383
MS.gene22792.t1 AT3G10710 43.802 484 244 10 68 542 97 561 2.16e-127 384
MS.gene22792.t1 AT3G14310 42.283 473 239 5 102 542 122 592 4.92e-126 382
MS.gene22792.t1 AT3G60730 41.988 493 247 7 78 542 38 519 1.15e-125 378
MS.gene22792.t1 AT5G51490 43.035 481 244 10 77 542 71 536 4.87e-124 375
MS.gene22792.t1 AT4G00190 44.843 446 202 8 106 542 64 474 3.95e-123 370
MS.gene22792.t1 AT4G02330 42.259 478 233 9 106 542 96 571 3.91e-122 371
MS.gene22792.t1 AT3G47400 39.227 543 290 10 24 542 68 594 1.71e-120 367
MS.gene22792.t1 AT3G59010 43.607 438 234 6 107 542 102 528 3.32e-119 362
MS.gene22792.t1 AT5G04960 40.787 483 261 7 68 540 95 562 3.36e-118 360
MS.gene22792.t1 AT5G51500 41.164 481 253 10 77 542 75 540 1.05e-117 358
MS.gene22792.t1 AT5G04970 43.396 477 226 12 103 542 151 620 9.70e-117 358
MS.gene22792.t1 AT4G33230 38.302 530 300 12 31 542 86 606 1.96e-116 357
MS.gene22792.t1 AT1G02810 40.562 498 223 8 106 542 92 577 1.02e-115 355
MS.gene22792.t1 AT3G10720 41.632 478 243 11 98 542 141 615 1.48e-115 355
MS.gene22792.t1 AT1G53840 39.010 505 280 11 52 536 85 581 5.25e-115 353
MS.gene22792.t1 AT5G49180 36.932 528 306 11 31 538 46 566 1.13e-114 352
MS.gene22792.t1 AT2G47550 44.304 474 213 14 106 542 99 558 1.38e-114 351
MS.gene22792.t1 AT2G26450 40.246 487 266 12 68 542 138 611 2.14e-114 352
MS.gene22792.t1 AT5G20860 40.133 451 232 10 108 542 110 538 2.57e-105 327
MS.gene22792.t1 AT4G03930 42.446 417 209 8 140 542 125 524 1.02e-104 324
MS.gene22792.t1 AT3G06830 35.472 530 299 12 40 540 51 566 1.21e-104 325
MS.gene22792.t1 AT1G11590 42.271 414 214 6 140 542 125 524 1.51e-102 319
MS.gene22792.t1 AT3G10720 55.769 260 105 3 292 542 1 259 4.89e-102 308
MS.gene22792.t1 AT3G14300 36.821 497 292 8 52 533 471 960 6.22e-102 329
MS.gene22792.t1 AT3G27980 40.494 405 217 5 147 542 108 497 3.71e-98 306
MS.gene22792.t1 AT4G15980 44.380 347 180 4 206 540 355 700 5.34e-92 296
MS.gene22792.t1 AT4G15980 44.380 347 180 4 206 540 365 710 9.47e-92 296
MS.gene22792.t1 AT5G09760 36.090 532 277 17 36 530 41 546 5.85e-89 284
MS.gene22792.t1 AT5G09760 35.888 535 280 17 33 530 64 572 1.04e-88 285
MS.gene22792.t1 AT5G64640 33.272 547 279 15 38 534 91 601 4.80e-86 278
MS.gene22792.t1 AT5G20860 36.009 436 213 9 108 527 110 495 1.51e-80 261
MS.gene22792.t1 AT3G62170 29.982 557 326 14 37 542 45 588 5.96e-76 251
MS.gene22792.t1 AT2G47030 29.983 597 348 15 3 542 5 588 1.32e-75 250
MS.gene22792.t1 AT1G11370 44.487 263 132 2 219 472 29 286 1.94e-72 233
MS.gene22792.t1 AT2G47040 31.041 509 280 12 95 542 97 595 9.11e-72 240
MS.gene22792.t1 AT2G36710 34.884 301 186 4 243 536 93 390 3.46e-55 191
MS.gene22792.t1 AT5G19730 33.333 354 203 8 202 531 37 381 7.27e-54 187
MS.gene22792.t1 AT2G36700 32.153 339 207 6 198 531 13 333 1.18e-52 182
MS.gene22792.t1 AT1G05310 33.333 300 187 5 242 531 92 388 1.21e-49 176
MS.gene22792.t1 AT3G29090 34.615 312 179 7 243 537 9 312 3.25e-49 172
MS.gene22792.t1 AT3G17060 31.544 298 190 5 242 532 47 337 1.33e-48 172
MS.gene22792.t1 AT1G44980 44.149 188 103 1 219 404 54 241 5.04e-46 162
MS.gene22792.t1 AT5G47500 29.428 367 226 8 183 533 11 360 8.08e-46 165
MS.gene22792.t1 AT2G21610 31.615 291 186 5 243 531 53 332 8.51e-45 162
MS.gene22792.t1 AT2G21610 31.615 291 186 5 243 531 58 337 1.61e-44 161
MS.gene22792.t1 AT5G07430 34.021 291 178 7 247 531 73 355 7.52e-43 157
MS.gene22792.t1 AT5G18990 32.595 316 189 7 228 531 20 323 3.91e-41 151
MS.gene22792.t1 AT3G24130 30.938 320 194 9 228 531 20 328 1.15e-40 150
MS.gene22792.t1 AT5G55590 31.788 302 188 7 242 531 83 378 1.47e-38 145
MS.gene22792.t1 AT5G55590 32.927 246 150 5 242 475 83 325 2.94e-38 143
MS.gene22792.t1 AT3G49220 30.345 290 184 5 40 321 132 411 1.54e-37 144
MS.gene22792.t1 AT5G61680 29.912 341 202 9 204 531 42 358 1.32e-36 140
MS.gene22792.t1 AT2G19150 31.081 296 189 5 251 538 51 339 1.37e-36 139
MS.gene22792.t1 AT5G26810 32.258 279 168 5 242 504 35 308 3.61e-36 138
MS.gene22792.t1 AT5G07420 31.081 296 190 7 242 531 68 355 1.21e-33 131
MS.gene22792.t1 AT1G69940 27.891 294 189 7 249 531 74 355 7.40e-33 129
MS.gene22792.t1 AT2G19150 32.618 233 145 4 251 475 51 279 9.89e-33 127
MS.gene22792.t1 AT5G07410 27.551 294 190 7 249 531 74 355 1.30e-32 129
MS.gene22792.t1 AT2G47280 28.808 302 195 7 243 533 37 329 1.65e-29 119
MS.gene22792.t1 AT3G62820 27.979 193 124 5 5 194 9 189 5.83e-14 71.2
MS.gene22792.t1 AT5G62360 32.593 135 85 3 58 190 64 194 7.55e-13 68.2
MS.gene22792.t1 AT1G62770 28.000 200 120 6 7 194 8 195 3.87e-11 63.2

Find 139 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTCACAACCTACATATT+TGG 0.095781 7.3:-4096866 MS.gene22792:CDS
CAGACCAATCTGCATTCTTT+AGG 0.260515 7.3:-4097125 MS.gene22792:CDS
TGTTAATGTGTAGCTGTATC+TGG 0.260734 7.3:-4097231 MS.gene22792:intron
GCCTCACAACCTACATATTT+GGG 0.269773 7.3:-4096865 MS.gene22792:CDS
AGCTTAATCGCTTACCCTTT+AGG 0.279269 7.3:-4097756 MS.gene22792:CDS
AAGCTTGCATATCTTGAGTT+TGG 0.290313 7.3:+4098241 None:intergenic
AATCCAAGATAGTTATGTTT+TGG 0.298560 7.3:-4096887 MS.gene22792:CDS
CTTGATCAAATGATGGTAAA+AGG 0.313433 7.3:+4098298 None:intergenic
GTGAACTTAACACCTGTTCT+AGG 0.327842 7.3:+4096589 None:intergenic
TACGGTGAATACAGGAATTA+TGG 0.331114 7.3:-4096727 MS.gene22792:CDS
TGGACTTGGAGGGCCTGTTC+TGG 0.341206 7.3:+4098149 None:intergenic
CTACATATTTGGGGAGGCCT+TGG 0.347308 7.3:-4096855 MS.gene22792:CDS
TTCTTTAGGTGTAGCATAGA+AGG 0.349482 7.3:-4097111 MS.gene22792:CDS
GGTTCCTTAACGGCGGTTCA+TGG 0.359467 7.3:-4096615 MS.gene22792:CDS
TCAGAGCTTGCATGGTCGTT+AGG 0.365066 7.3:-4097979 MS.gene22792:CDS
TGTTTGTGAGGCATGAGTTT+TGG 0.365441 7.3:+4098187 None:intergenic
GATCTTTGTCATGTTGTTGA+TGG 0.368569 7.3:+4098074 None:intergenic
GCCACGGCTTGATGGTTTAC+CGG 0.370851 7.3:+4097162 None:intergenic
TCAGCCTCTGTCATCCATTC+AGG 0.371531 7.3:+4097679 None:intergenic
GAGCTCCTTGCAATCTTCTA+TGG 0.371794 7.3:+4098017 None:intergenic
TACCGTGAATGCGAAATCTA+TGG 0.377605 7.3:-4097048 MS.gene22792:CDS
CACGCAATGCCACGGCTTGA+TGG 0.381995 7.3:+4097154 None:intergenic
AACTAGTACTGATGAAAGTT+TGG 0.382732 7.3:-4097707 MS.gene22792:CDS
ATGTCTGAGGGAATTTCATC+TGG 0.384523 7.3:+4098264 None:intergenic
TTACCGGTCCAGCAGTGTTC+CGG 0.387620 7.3:+4097178 None:intergenic
CAGAGCTTGCATGGTCGTTA+GGG 0.395199 7.3:-4097978 MS.gene22792:CDS
TCTACCAGCGAGCGATGAAC+CGG 0.402703 7.3:+4096702 None:intergenic
ACGGTTCAGCGGTTCCTTAA+CGG 0.416002 7.3:-4096625 MS.gene22792:CDS
GATGCAGTTGTTGCGTTGGA+TGG 0.417977 7.3:-4097616 MS.gene22792:CDS
AGGCCAAAACATAACTATCT+TGG 0.418609 7.3:+4096884 None:intergenic
CCGCACTTAGCCATGCTTCG+AGG 0.428133 7.3:+4097905 None:intergenic
CAGCTCCTAGTCATAGCAAT+AGG 0.443935 7.3:-4097555 MS.gene22792:CDS
CCGCTGAACCGTAAAATAAC+CGG 0.446817 7.3:+4096636 None:intergenic
TAACACATACATGAGTAGTA+TGG 0.446857 7.3:-4096806 MS.gene22792:CDS
ATGACATTCCGGAACACTGC+TGG 0.450390 7.3:-4097186 MS.gene22792:CDS
CATGTTGTTGATGGCACCTA+TGG 0.452823 7.3:+4098083 None:intergenic
ACAGAACATTACTGATAAGC+TGG 0.453691 7.3:+4097791 None:intergenic
ATTAAAGACGCTTCTGCCGC+CGG 0.455714 7.3:-4096655 MS.gene22792:CDS
TAACAGCTTCGTTGATTGTA+CGG 0.460625 7.3:+4097581 None:intergenic
CGTCTTGAGAGTTACATTAG+TGG 0.463916 7.3:-4097832 MS.gene22792:CDS
TCATGCAAGGTAGTGTTCCT+TGG 0.464611 7.3:+4097730 None:intergenic
GCAACCATGAACCGCCGTTA+AGG 0.465728 7.3:+4096611 None:intergenic
CATAACGAGCTAACCAGAAC+AGG 0.467307 7.3:-4098162 MS.gene22792:CDS
ACTTTGCATTAGACACTTTG+TGG 0.470978 7.3:-4096750 MS.gene22792:CDS
TTCCATAGATTTCGCATTCA+CGG 0.471515 7.3:+4097046 None:intergenic
GGTTCATGGTTGCCTAGAAC+AGG 0.472411 7.3:-4096601 MS.gene22792:CDS
TTGCAAGGGACATGACATTC+CGG 0.473496 7.3:-4097197 MS.gene22792:CDS
AGTTCCACTTCCATTACAAA+AGG 0.474475 7.3:-4096962 MS.gene22792:CDS
CTTTGTGGTACGGTGAATAC+AGG 0.485605 7.3:-4096735 MS.gene22792:CDS
GTGAAGCCTGTGCTTTGATG+TGG 0.491231 7.3:+4096910 None:intergenic
ATTCCGGAACACTGCTGGAC+CGG 0.491888 7.3:-4097181 MS.gene22792:CDS
AATCAAGACACATGTATTGA+AGG 0.492230 7.3:-4097874 MS.gene22792:CDS
ACAGGTGTTAAGTTCACAGC+AGG 0.494156 7.3:-4096583 MS.gene22792:CDS
ACATGTATTGAAGGGTTTGA+AGG 0.494549 7.3:-4097865 MS.gene22792:CDS
CGCTCGCTGGTAGAGTCAAA+TGG 0.495741 7.3:-4096693 MS.gene22792:CDS
AGAACTCTACTTACCAAAAG+TGG 0.497125 7.3:+4097378 None:intergenic
ACCTATGGCTTCATTGATTG+TGG 0.498951 7.3:+4098098 None:intergenic
ACATGTTATCTATGTGAAGA+AGG 0.503880 7.3:-4097530 MS.gene22792:CDS
ATGACAGAAGTTGGACTTGG+AGG 0.503881 7.3:+4098138 None:intergenic
GTAAAAGGATGAGAATGAAA+AGG 0.505964 7.3:+4098313 None:intergenic
GCAGCATTAATGACAGAAGT+TGG 0.507875 7.3:+4098129 None:intergenic
AAAGTTTGGAGTTTCCTGAA+TGG 0.509972 7.3:-4097693 MS.gene22792:CDS
AACCTCGAGGGTGGCTTGAG+TGG 0.510238 7.3:-4096780 MS.gene22792:CDS
AGTGTTCCTTGGAGACCTAA+AGG 0.513393 7.3:+4097741 None:intergenic
GTTCTAGAATATTCCTTCCA+AGG 0.522274 7.3:+4096838 None:intergenic
ATGATCGTTGGTGATGGTAT+TGG 0.525137 7.3:-4097460 MS.gene22792:CDS
GTGTTCCTTGGAGACCTAAA+GGG 0.526257 7.3:+4097742 None:intergenic
TGACAGAAGTTGGACTTGGA+GGG 0.528123 7.3:+4098139 None:intergenic
CTGGGAAGGGTTTCATTGCA+AGG 0.529923 7.3:-4097212 MS.gene22792:CDS
TTAATGACAGAAGTTGGACT+TGG 0.530794 7.3:+4098135 None:intergenic
GCATTAGACACTTTGTGGTA+CGG 0.536809 7.3:-4096745 MS.gene22792:CDS
GAGAGAACTTGATCAAATGA+TGG 0.538479 7.3:+4098291 None:intergenic
TTTGATTGCACAAGCTTGCA+TGG 0.540945 7.3:-4098220 MS.gene22792:CDS
CGAGGGTGGCTTGAGTGGCT+CGG 0.541369 7.3:-4096775 MS.gene22792:CDS
GCTCTGACACAGAGAAATCA+AGG 0.541696 7.3:+4097995 None:intergenic
TCTCTGTGTCAGAGCTTGCA+TGG 0.541979 7.3:-4097987 MS.gene22792:CDS
ATGCAGTTGTTGCGTTGGAT+GGG 0.542294 7.3:-4097615 MS.gene22792:CDS
ATCAAGACACATGTATTGAA+GGG 0.544777 7.3:-4097873 MS.gene22792:CDS
CAAGGCCTCCCCAAATATGT+AGG 0.548118 7.3:+4096856 None:intergenic
ATGTGTAGCTGTATCTGGGA+AGG 0.551122 7.3:-4097226 MS.gene22792:intron
TGGGAAGGGTTTCATTGCAA+GGG 0.552908 7.3:-4097211 MS.gene22792:CDS
ATTGCGATTGCTTGTAACAA+TGG 0.557427 7.3:+4097432 None:intergenic
GCTGGTAGAGTCAAATGGCC+TGG 0.558166 7.3:-4096688 MS.gene22792:CDS
ATATTTGGGGAGGCCTTGGA+AGG 0.559715 7.3:-4096851 MS.gene22792:CDS
TGTGTAGCTGTATCTGGGAA+GGG 0.561947 7.3:-4097225 MS.gene22792:intron
TGCAGATGCAGTTGTTGCGT+TGG 0.563751 7.3:-4097620 MS.gene22792:CDS
AAAAGTCCACATCAAAGCAC+AGG 0.565467 7.3:-4096916 MS.gene22792:CDS
ATCAGTACTAGTTTCATGCA+AGG 0.565775 7.3:+4097717 None:intergenic
AAAAGTGGCAGTTCGAAAAG+TGG 0.570595 7.3:+4097393 None:intergenic
TACACCTAAAGAATGCAGAT+TGG 0.571861 7.3:+4097121 None:intergenic
ATCGCAATTTCATGCAAGGA+TGG 0.575589 7.3:-4097417 MS.gene22792:CDS
AAGGTTACAATCACAGCTCA+AGG 0.578151 7.3:-4096943 MS.gene22792:CDS
AACATCATGATCGTTGGTGA+TGG 0.582464 7.3:-4097466 MS.gene22792:CDS
TGTGAAGAAGGGACTATACA+AGG 0.586315 7.3:-4097518 MS.gene22792:CDS
GTTAATGTGTAGCTGTATCT+GGG 0.587683 7.3:-4097230 MS.gene22792:intron
TCTTGAGTTTGGATGTCTGA+GGG 0.587826 7.3:+4098252 None:intergenic
GTTGTTGCGTTGGATGGGAG+CGG 0.587962 7.3:-4097610 MS.gene22792:CDS
AGCAATCGCAATTTCATGCA+AGG 0.589039 7.3:-4097421 MS.gene22792:CDS
CATGTTATCTATGTGAAGAA+GGG 0.590596 7.3:-4097529 MS.gene22792:CDS
GGACCCGGTTCATCGCTCGC+TGG 0.591181 7.3:-4096706 MS.gene22792:CDS
GAAAAGGAAATTCACTAGCA+AGG 0.591237 7.3:+4098329 None:intergenic
ATCACCAACGATCATGATGT+TGG 0.592216 7.3:+4097468 None:intergenic
AGTGTGCGTAAAGTGTGTCT+TGG 0.597316 7.3:+4097085 None:intergenic
ACGAAGGAAACCTCGAAGCA+TGG 0.597380 7.3:-4097915 MS.gene22792:CDS
ATGACCAACATCATGATCGT+TGG 0.598022 7.3:-4097472 MS.gene22792:CDS
ATCTTGAGTTTGGATGTCTG+AGG 0.599334 7.3:+4098251 None:intergenic
GCTCGTTATGAATGTTTGTG+AGG 0.604269 7.3:+4098175 None:intergenic
CAGAACATTACTGATAAGCT+GGG 0.605848 7.3:+4097792 None:intergenic
TTACAATCACAGCTCAAGGT+AGG 0.609803 7.3:-4096939 MS.gene22792:CDS
CTTCTATGGCAAGTTGCTCG+CGG 0.617529 7.3:+4098031 None:intergenic
GCTTACCCTTTAGGTCTCCA+AGG 0.618807 7.3:-4097747 MS.gene22792:CDS
CATGGTCGTTAGGGGAGATG+AGG 0.619966 7.3:-4097969 MS.gene22792:CDS
ACTTGCCATAGAAGATTGCA+AGG 0.620029 7.3:-4098022 MS.gene22792:CDS
CCCCAAATATGTAGGTTGTG+AGG 0.623360 7.3:+4096864 None:intergenic
GTAGTATGGTTCAACCTCGA+GGG 0.629470 7.3:-4096792 MS.gene22792:CDS
AGTAGTATGGTTCAACCTCG+AGG 0.630686 7.3:-4096793 MS.gene22792:CDS
TGAATCGACACGCAATGCCA+CGG 0.630967 7.3:+4097146 None:intergenic
GACAGAACTGCGCAGTACGA+AGG 0.633449 7.3:-4097931 MS.gene22792:CDS
GAGATGAGGAGAATTCGAGC+CGG 0.635377 7.3:-4097955 MS.gene22792:CDS
CTACCAGCGAGCGATGAACC+GGG 0.640025 7.3:+4096703 None:intergenic
TGTCTGAGGGAATTTCATCT+GGG 0.640715 7.3:+4098265 None:intergenic
GTACTGCGCAGTTCTGTCGC+CGG 0.644383 7.3:+4097936 None:intergenic
CCTCACAACCTACATATTTG+GGG 0.650108 7.3:-4096864 MS.gene22792:CDS
AGAGCTTGCATGGTCGTTAG+GGG 0.652304 7.3:-4097977 MS.gene22792:CDS
TGTCTCCTATTGCTATGACT+AGG 0.654035 7.3:+4097550 None:intergenic
GTATGGTTCAACCTCGAGGG+TGG 0.654064 7.3:-4096789 MS.gene22792:CDS
TCTTTAATGACATGATAACC+AGG 0.655480 7.3:+4096670 None:intergenic
CCTCGAAGCATGGCTAAGTG+CGG 0.658255 7.3:-4097905 MS.gene22792:CDS
ACCACAATCAATGAAGCCAT+AGG 0.663784 7.3:-4098099 MS.gene22792:CDS
ACCGGTAAACCATCAAGCCG+TGG 0.664465 7.3:-4097163 MS.gene22792:CDS
GAATACAGGAATTATGGACC+CGG 0.671183 7.3:-4096721 MS.gene22792:CDS
CACAACCTACATATTTGGGG+AGG 0.675764 7.3:-4096861 MS.gene22792:CDS
CTACTTAAATCTAAGCCGCA+CGG 0.678224 7.3:-4097649 MS.gene22792:CDS
AGCCACTCAAGCCACCCTCG+AGG 0.711855 7.3:+4096778 None:intergenic
GTTCAGCGGTTCCTTAACGG+CGG 0.714803 7.3:-4096622 MS.gene22792:CDS
CAGGTGTTAAGTTCACAGCA+GGG 0.718376 7.3:-4096582 MS.gene22792:CDS
CTGAACCGTAAAATAACCGG+CGG 0.728593 7.3:+4096639 None:intergenic
GTTTCCTGAATGGATGACAG+AGG 0.756653 7.3:-4097683 MS.gene22792:CDS
GCATCTGCAATCTTACCGTG+CGG 0.785544 7.3:+4097634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAATTGGTATATACTGAAT+TGG - chr7.3:4097635-4097654 MS.gene22792:CDS 25.0%
!! AATCCAAGATAGTTATGTTT+TGG - chr7.3:4098016-4098035 MS.gene22792:CDS 25.0%
AATCAAGACACATGTATTGA+AGG - chr7.3:4097029-4097048 MS.gene22792:CDS 30.0%
ACATGTTATCTATGTGAAGA+AGG - chr7.3:4097373-4097392 MS.gene22792:intron 30.0%
ATCAAGACACATGTATTGAA+GGG - chr7.3:4097030-4097049 MS.gene22792:CDS 30.0%
ATTCCCAAAAATGAAGTCTA+TGG + chr7.3:4097883-4097902 None:intergenic 30.0%
CATGTTATCTATGTGAAGAA+GGG - chr7.3:4097374-4097393 MS.gene22792:intron 30.0%
CTTGATCAAATGATGGTAAA+AGG + chr7.3:4096608-4096627 None:intergenic 30.0%
GTAAAAGGATGAGAATGAAA+AGG + chr7.3:4096593-4096612 None:intergenic 30.0%
TAACACATACATGAGTAGTA+TGG - chr7.3:4098097-4098116 MS.gene22792:CDS 30.0%
TCTTTAATGACATGATAACC+AGG + chr7.3:4098236-4098255 None:intergenic 30.0%
! ACACACTCTTTTCAATATGT+AGG + chr7.3:4097608-4097627 None:intergenic 30.0%
! GTGATTGTAACCTTTTGTAA+TGG + chr7.3:4097954-4097973 None:intergenic 30.0%
!! AACTAGTACTGATGAAAGTT+TGG - chr7.3:4097196-4097215 MS.gene22792:CDS 30.0%
!! ATAGACTTCATTTTTGGGAA+TGG - chr7.3:4097882-4097901 MS.gene22792:CDS 30.0%
!! GAACCATAGACTTCATTTTT+GGG - chr7.3:4097877-4097896 MS.gene22792:CDS 30.0%
AACAGTATTTCTCTAGCGTA+AGG - chr7.3:4097553-4097572 MS.gene22792:CDS 35.0%
AAGCTTGCATATCTTGAGTT+TGG + chr7.3:4096665-4096684 None:intergenic 35.0%
ACAGAACATTACTGATAAGC+TGG + chr7.3:4097115-4097134 None:intergenic 35.0%
ACATGTATTGAAGGGTTTGA+AGG - chr7.3:4097038-4097057 MS.gene22792:CDS 35.0%
ACTTTGCATTAGACACTTTG+TGG - chr7.3:4098153-4098172 MS.gene22792:CDS 35.0%
AGAACTCTACTTACCAAAAG+TGG + chr7.3:4097528-4097547 None:intergenic 35.0%
AGGCCAAAACATAACTATCT+TGG + chr7.3:4098022-4098041 None:intergenic 35.0%
AGTTCCACTTCCATTACAAA+AGG - chr7.3:4097941-4097960 MS.gene22792:CDS 35.0%
ATTGCGATTGCTTGTAACAA+TGG + chr7.3:4097474-4097493 None:intergenic 35.0%
CAGAACATTACTGATAAGCT+GGG + chr7.3:4097114-4097133 None:intergenic 35.0%
GAAAAGGAAATTCACTAGCA+AGG + chr7.3:4096577-4096596 None:intergenic 35.0%
GAGAGAACTTGATCAAATGA+TGG + chr7.3:4096615-4096634 None:intergenic 35.0%
GAGTGTGTTAGAGAATGAAT+TGG - chr7.3:4097620-4097639 MS.gene22792:CDS 35.0%
GATCTTTGTCATGTTGTTGA+TGG + chr7.3:4096832-4096851 None:intergenic 35.0%
GTTAATGTGTAGCTGTATCT+GGG - chr7.3:4097673-4097692 MS.gene22792:CDS 35.0%
TACACCTAAAGAATGCAGAT+TGG + chr7.3:4097785-4097804 None:intergenic 35.0%
TACGGTGAATACAGGAATTA+TGG - chr7.3:4098176-4098195 MS.gene22792:CDS 35.0%
TGTTAATGTGTAGCTGTATC+TGG - chr7.3:4097672-4097691 MS.gene22792:CDS 35.0%
TTAATGACAGAAGTTGGACT+TGG + chr7.3:4096771-4096790 None:intergenic 35.0%
TTCCATAGATTTCGCATTCA+CGG + chr7.3:4097860-4097879 None:intergenic 35.0%
TTCTTTAGGTGTAGCATAGA+AGG - chr7.3:4097792-4097811 MS.gene22792:CDS 35.0%
! AAAGTTTGGAGTTTCCTGAA+TGG - chr7.3:4097210-4097229 MS.gene22792:CDS 35.0%
! ATCAGTACTAGTTTCATGCA+AGG + chr7.3:4097189-4097208 None:intergenic 35.0%
! GGAACCATAGACTTCATTTT+TGG - chr7.3:4097876-4097895 MS.gene22792:CDS 35.0%
! TAACAGCTTCGTTGATTGTA+CGG + chr7.3:4097325-4097344 None:intergenic 35.0%
!! GTAACCTTTTGTAATGGAAG+TGG + chr7.3:4097948-4097967 None:intergenic 35.0%
!! GTTCTAGAATATTCCTTCCA+AGG + chr7.3:4098068-4098087 None:intergenic 35.0%
AAAAGTCCACATCAAAGCAC+AGG - chr7.3:4097987-4098006 MS.gene22792:CDS 40.0%
AAAAGTGGCAGTTCGAAAAG+TGG + chr7.3:4097513-4097532 None:intergenic 40.0%
AAGGTTACAATCACAGCTCA+AGG - chr7.3:4097960-4097979 MS.gene22792:CDS 40.0%
ACCACAATCAATGAAGCCAT+AGG - chr7.3:4096804-4096823 MS.gene22792:CDS 40.0%
ACTTGCCATAGAAGATTGCA+AGG - chr7.3:4096881-4096900 MS.gene22792:CDS 40.0%
AGCAATCGCAATTTCATGCA+AGG - chr7.3:4097482-4097501 MS.gene22792:CDS 40.0%
AGCTTAATCGCTTACCCTTT+AGG - chr7.3:4097147-4097166 MS.gene22792:CDS 40.0%
ATCACCAACGATCATGATGT+TGG + chr7.3:4097438-4097457 None:intergenic 40.0%
ATCGCAATTTCATGCAAGGA+TGG - chr7.3:4097486-4097505 MS.gene22792:CDS 40.0%
ATCTTGAGTTTGGATGTCTG+AGG + chr7.3:4096655-4096674 None:intergenic 40.0%
ATGACCAACATCATGATCGT+TGG - chr7.3:4097431-4097450 MS.gene22792:CDS 40.0%
ATGTCTGAGGGAATTTCATC+TGG + chr7.3:4096642-4096661 None:intergenic 40.0%
CAGACCAATCTGCATTCTTT+AGG - chr7.3:4097778-4097797 MS.gene22792:CDS 40.0%
CCTCACAACCTACATATTTG+GGG - chr7.3:4098039-4098058 MS.gene22792:CDS 40.0%
CGTCTTGAGAGTTACATTAG+TGG - chr7.3:4097071-4097090 MS.gene22792:CDS 40.0%
CTACTTAAATCTAAGCCGCA+CGG - chr7.3:4097254-4097273 MS.gene22792:intron 40.0%
GAATACAGGAATTATGGACC+CGG - chr7.3:4098182-4098201 MS.gene22792:CDS 40.0%
GCAGCATTAATGACAGAAGT+TGG + chr7.3:4096777-4096796 None:intergenic 40.0%
GCATTAGACACTTTGTGGTA+CGG - chr7.3:4098158-4098177 MS.gene22792:CDS 40.0%
GCCTCACAACCTACATATTT+GGG - chr7.3:4098038-4098057 MS.gene22792:CDS 40.0%
GCTCGTTATGAATGTTTGTG+AGG + chr7.3:4096731-4096750 None:intergenic 40.0%
GTGAACTTAACACCTGTTCT+AGG + chr7.3:4098317-4098336 None:intergenic 40.0%
TACCGTGAATGCGAAATCTA+TGG - chr7.3:4097855-4097874 MS.gene22792:CDS 40.0%
TCTTGAGTTTGGATGTCTGA+GGG + chr7.3:4096654-4096673 None:intergenic 40.0%
TGTCTCCTATTGCTATGACT+AGG + chr7.3:4097356-4097375 None:intergenic 40.0%
TGTCTGAGGGAATTTCATCT+GGG + chr7.3:4096641-4096660 None:intergenic 40.0%
TGTGAAGAAGGGACTATACA+AGG - chr7.3:4097385-4097404 MS.gene22792:intron 40.0%
TTACAATCACAGCTCAAGGT+AGG - chr7.3:4097964-4097983 MS.gene22792:CDS 40.0%
TTTGATTGCACAAGCTTGCA+TGG - chr7.3:4096683-4096702 MS.gene22792:CDS 40.0%
! AACATCATGATCGTTGGTGA+TGG - chr7.3:4097437-4097456 MS.gene22792:CDS 40.0%
! ACCTATGGCTTCATTGATTG+TGG + chr7.3:4096808-4096827 None:intergenic 40.0%
! TGTTTGTGAGGCATGAGTTT+TGG + chr7.3:4096719-4096738 None:intergenic 40.0%
!! ATGATCGTTGGTGATGGTAT+TGG - chr7.3:4097443-4097462 MS.gene22792:CDS 40.0%
!!! ACTTTTCGAACTGCCACTTT+TGG - chr7.3:4097512-4097531 MS.gene22792:CDS 40.0%
ACAGGTGTTAAGTTCACAGC+AGG - chr7.3:4098320-4098339 MS.gene22792:CDS 45.0%
AGTAGTATGGTTCAACCTCG+AGG - chr7.3:4098110-4098129 MS.gene22792:CDS 45.0%
AGTGTGCGTAAAGTGTGTCT+TGG + chr7.3:4097821-4097840 None:intergenic 45.0%
AGTGTTCCTTGGAGACCTAA+AGG + chr7.3:4097165-4097184 None:intergenic 45.0%
ATGACAGAAGTTGGACTTGG+AGG + chr7.3:4096768-4096787 None:intergenic 45.0%
ATGCAGTTGTTGCGTTGGAT+GGG - chr7.3:4097288-4097307 MS.gene22792:intron 45.0%
ATGTGTAGCTGTATCTGGGA+AGG - chr7.3:4097677-4097696 MS.gene22792:CDS 45.0%
CACAACCTACATATTTGGGG+AGG - chr7.3:4098042-4098061 MS.gene22792:CDS 45.0%
CAGCTCCTAGTCATAGCAAT+AGG - chr7.3:4097348-4097367 MS.gene22792:intron 45.0%
CAGGTGTTAAGTTCACAGCA+GGG - chr7.3:4098321-4098340 MS.gene22792:CDS 45.0%
CATAACGAGCTAACCAGAAC+AGG - chr7.3:4096741-4096760 MS.gene22792:CDS 45.0%
CCCCAAATATGTAGGTTGTG+AGG + chr7.3:4098042-4098061 None:intergenic 45.0%
CCGCTGAACCGTAAAATAAC+CGG + chr7.3:4098270-4098289 None:intergenic 45.0%
CTGAACCGTAAAATAACCGG+CGG + chr7.3:4098267-4098286 None:intergenic 45.0%
CTTTGTGGTACGGTGAATAC+AGG - chr7.3:4098168-4098187 MS.gene22792:CDS 45.0%
GAGCTCCTTGCAATCTTCTA+TGG + chr7.3:4096889-4096908 None:intergenic 45.0%
GCTCTGACACAGAGAAATCA+AGG + chr7.3:4096911-4096930 None:intergenic 45.0%
GGCCTCACAACCTACATATT+TGG - chr7.3:4098037-4098056 MS.gene22792:CDS 45.0%
GTAGTATGGTTCAACCTCGA+GGG - chr7.3:4098111-4098130 MS.gene22792:CDS 45.0%
GTGTTCCTTGGAGACCTAAA+GGG + chr7.3:4097164-4097183 None:intergenic 45.0%
GTTTCCTGAATGGATGACAG+AGG - chr7.3:4097220-4097239 MS.gene22792:CDS 45.0%
TCATGCAAGGTAGTGTTCCT+TGG + chr7.3:4097176-4097195 None:intergenic 45.0%
TGACAGAAGTTGGACTTGGA+GGG + chr7.3:4096767-4096786 None:intergenic 45.0%
TGGGAAGGGTTTCATTGCAA+GGG - chr7.3:4097692-4097711 MS.gene22792:CDS 45.0%
TGTGTAGCTGTATCTGGGAA+GGG - chr7.3:4097678-4097697 MS.gene22792:CDS 45.0%
TTGCAAGGGACATGACATTC+CGG - chr7.3:4097706-4097725 MS.gene22792:CDS 45.0%
!! CATGTTGTTGATGGCACCTA+TGG + chr7.3:4096823-4096842 None:intergenic 45.0%
!! CCGGTTATTTTACGGTTCAG+CGG - chr7.3:4098267-4098286 MS.gene22792:CDS 45.0%
!! TTCTGCCGCCGGTTATTTTA+CGG - chr7.3:4098259-4098278 MS.gene22792:CDS 45.0%
ACGAAGGAAACCTCGAAGCA+TGG - chr7.3:4096988-4097007 MS.gene22792:CDS 50.0%
ACGGTTCAGCGGTTCCTTAA+CGG - chr7.3:4098278-4098297 MS.gene22792:CDS 50.0%
AGAGCTTGCATGGTCGTTAG+GGG - chr7.3:4096926-4096945 MS.gene22792:CDS 50.0%
ATATTTGGGGAGGCCTTGGA+AGG - chr7.3:4098052-4098071 MS.gene22792:CDS 50.0%
ATGACATTCCGGAACACTGC+TGG - chr7.3:4097717-4097736 MS.gene22792:CDS 50.0%
ATTAAAGACGCTTCTGCCGC+CGG - chr7.3:4098248-4098267 MS.gene22792:CDS 50.0%
CAAGGCCTCCCCAAATATGT+AGG + chr7.3:4098050-4098069 None:intergenic 50.0%
CAGAGCTTGCATGGTCGTTA+GGG - chr7.3:4096925-4096944 MS.gene22792:CDS 50.0%
CTACATATTTGGGGAGGCCT+TGG - chr7.3:4098048-4098067 MS.gene22792:CDS 50.0%
CTGGGAAGGGTTTCATTGCA+AGG - chr7.3:4097691-4097710 MS.gene22792:CDS 50.0%
CTTCTATGGCAAGTTGCTCG+CGG + chr7.3:4096875-4096894 None:intergenic 50.0%
GAGATGAGGAGAATTCGAGC+CGG - chr7.3:4096948-4096967 MS.gene22792:CDS 50.0%
GATGCAGTTGTTGCGTTGGA+TGG - chr7.3:4097287-4097306 MS.gene22792:intron 50.0%
GCATCTGCAATCTTACCGTG+CGG + chr7.3:4097272-4097291 None:intergenic 50.0%
GCTTACCCTTTAGGTCTCCA+AGG - chr7.3:4097156-4097175 MS.gene22792:CDS 50.0%
GGTTCATGGTTGCCTAGAAC+AGG - chr7.3:4098302-4098321 MS.gene22792:CDS 50.0%
GTGAAGCCTGTGCTTTGATG+TGG + chr7.3:4097996-4098015 None:intergenic 50.0%
TCAGAGCTTGCATGGTCGTT+AGG - chr7.3:4096924-4096943 MS.gene22792:CDS 50.0%
TCAGCCTCTGTCATCCATTC+AGG + chr7.3:4097227-4097246 None:intergenic 50.0%
TCTCTGTGTCAGAGCTTGCA+TGG - chr7.3:4096916-4096935 MS.gene22792:CDS 50.0%
TGAATCGACACGCAATGCCA+CGG + chr7.3:4097760-4097779 None:intergenic 50.0%
TGCAGATGCAGTTGTTGCGT+TGG - chr7.3:4097283-4097302 MS.gene22792:intron 50.0%
ACCGGTAAACCATCAAGCCG+TGG - chr7.3:4097740-4097759 MS.gene22792:CDS 55.0%
ATTCCGGAACACTGCTGGAC+CGG - chr7.3:4097722-4097741 MS.gene22792:CDS 55.0%
CATGGTCGTTAGGGGAGATG+AGG - chr7.3:4096934-4096953 MS.gene22792:CDS 55.0%
CCTCGAAGCATGGCTAAGTG+CGG - chr7.3:4096998-4097017 MS.gene22792:CDS 55.0%
CGCTCGCTGGTAGAGTCAAA+TGG - chr7.3:4098210-4098229 MS.gene22792:CDS 55.0%
GACAGAACTGCGCAGTACGA+AGG - chr7.3:4096972-4096991 MS.gene22792:CDS 55.0%
GCAACCATGAACCGCCGTTA+AGG + chr7.3:4098295-4098314 None:intergenic 55.0%
GCTGGTAGAGTCAAATGGCC+TGG - chr7.3:4098215-4098234 MS.gene22792:CDS 55.0%
GGTTCCTTAACGGCGGTTCA+TGG - chr7.3:4098288-4098307 MS.gene22792:CDS 55.0%
GTATGGTTCAACCTCGAGGG+TGG - chr7.3:4098114-4098133 MS.gene22792:CDS 55.0%
GTTCAGCGGTTCCTTAACGG+CGG - chr7.3:4098281-4098300 MS.gene22792:CDS 55.0%
GTTGTTGCGTTGGATGGGAG+CGG - chr7.3:4097293-4097312 MS.gene22792:intron 55.0%
TCTACCAGCGAGCGATGAAC+CGG + chr7.3:4098204-4098223 None:intergenic 55.0%
TTACCGGTCCAGCAGTGTTC+CGG + chr7.3:4097728-4097747 None:intergenic 55.0%
! GCCACGGCTTGATGGTTTAC+CGG + chr7.3:4097744-4097763 None:intergenic 55.0%
AACCTCGAGGGTGGCTTGAG+TGG - chr7.3:4098123-4098142 MS.gene22792:CDS 60.0%
CACGCAATGCCACGGCTTGA+TGG + chr7.3:4097752-4097771 None:intergenic 60.0%
CCGCACTTAGCCATGCTTCG+AGG + chr7.3:4097001-4097020 None:intergenic 60.0%
CTACCAGCGAGCGATGAACC+GGG + chr7.3:4098203-4098222 None:intergenic 60.0%
GTACTGCGCAGTTCTGTCGC+CGG + chr7.3:4096970-4096989 None:intergenic 60.0%
TGGACTTGGAGGGCCTGTTC+TGG + chr7.3:4096757-4096776 None:intergenic 60.0%
AGCCACTCAAGCCACCCTCG+AGG + chr7.3:4098128-4098147 None:intergenic 65.0%
CGAGGGTGGCTTGAGTGGCT+CGG - chr7.3:4098128-4098147 MS.gene22792:CDS 65.0%
GGACCCGGTTCATCGCTCGC+TGG - chr7.3:4098197-4098216 MS.gene22792:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 4096570 4098355 4096570 ID=MS.gene22792
chr7.3 mRNA 4096570 4098355 4096570 ID=MS.gene22792.t1;Parent=MS.gene22792
chr7.3 exon 4097392 4098355 4097392 ID=MS.gene22792.t1.exon1;Parent=MS.gene22792.t1
chr7.3 CDS 4097392 4098355 4097392 ID=cds.MS.gene22792.t1;Parent=MS.gene22792.t1
chr7.3 exon 4096570 4097240 4096570 ID=MS.gene22792.t1.exon2;Parent=MS.gene22792.t1
chr7.3 CDS 4096570 4097240 4096570 ID=cds.MS.gene22792.t1;Parent=MS.gene22792.t1
Gene Sequence

>MS.gene22792

ATGGCCTTGCTAGTGAATTTCCTTTTCATTCTCATCCTTTTACCATCATTTGATCAAGTTCTCTCATTCCCAGATGAAATTCCCTCAGACATCCAAACTCAAGATATGCAAGCTTTGATTGCACAAGCTTGCATGGATATTGAAAACCAAAACTCATGCCTCACAAACATTCATAACGAGCTAACCAGAACAGGCCCTCCAAGTCCAACTTCTGTCATTAATGCTGCACTTAGAACCACAATCAATGAAGCCATAGGTGCCATCAACAACATGACAAAGATCAGTACATTCTCTGTTAATAACCGCGAGCAACTTGCCATAGAAGATTGCAAGGAGCTCCTTGATTTCTCTGTGTCAGAGCTTGCATGGTCGTTAGGGGAGATGAGGAGAATTCGAGCCGGCGACAGAACTGCGCAGTACGAAGGAAACCTCGAAGCATGGCTAAGTGCGGCGCTTAGCAATCAAGACACATGTATTGAAGGGTTTGAAGGCACTGATAGACGTCTTGAGAGTTACATTAGTGGAAGCTTAACACAAGTAACCCAGCTTATCAGTAATGTTCTGTCTTTGTACACTCAGCTTAATCGCTTACCCTTTAGGTCTCCAAGGAACACTACCTTGCATGAAACTAGTACTGATGAAAGTTTGGAGTTTCCTGAATGGATGACAGAGGCTGATCAAGAGCTACTTAAATCTAAGCCGCACGGTAAGATTGCAGATGCAGTTGTTGCGTTGGATGGGAGCGGTCAGTACCGTACAATCAACGAAGCTGTTAATGCAGCTCCTAGTCATAGCAATAGGAGACATGTTATCTATGTGAAGAAGGGACTATACAAGGAGAATATTGATATGAAGAAGAAGATGACCAACATCATGATCGTTGGTGATGGTATTGGTCAAACCATTGTTACAAGCAATCGCAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACTTTTGGTAAGTAGAGTTCTTATTTAACAGTATTTCTCTAGCGTAAGGAATTGAAATCTGTGTTTTTTGTACTATCACCTACATATTGAAAAGAGTGTGTTAGAGAATGAATTGGTATATACTGAATTGGTTGATAATTTGAAATGTTAATGTGTAGCTGTATCTGGGAAGGGTTTCATTGCAAGGGACATGACATTCCGGAACACTGCTGGACCGGTAAACCATCAAGCCGTGGCATTGCGTGTCGATTCAGACCAATCTGCATTCTTTAGGTGTAGCATAGAAGGAAACCAAGACACACTTTACGCACACTCACTGAGACAGTTCTACCGTGAATGCGAAATCTATGGAACCATAGACTTCATTTTTGGGAATGGAGCTGCTGTGCTACAAAACTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCACATCAAAGCACAGGCTTCACAATCCAAGATAGTTATGTTTTGGCCTCACAACCTACATATTTGGGGAGGCCTTGGAAGGAATATTCTAGAACAGTTTACATTAACACATACATGAGTAGTATGGTTCAACCTCGAGGGTGGCTTGAGTGGCTCGGTAACTTTGCATTAGACACTTTGTGGTACGGTGAATACAGGAATTATGGACCCGGTTCATCGCTCGCTGGTAGAGTCAAATGGCCTGGTTATCATGTCATTAAAGACGCTTCTGCCGCCGGTTATTTTACGGTTCAGCGGTTCCTTAACGGCGGTTCATGGTTGCCTAGAACAGGTGTTAAGTTCACAGCAGGGCTAAGCAATTGA
Protein sequence

>MS.gene22792.t1

MALLVNFLFILILLPSFDQVLSFPDEIPSDIQTQDMQALIAQACMDIENQNSCLTNIHNELTRTGPPSPTSVINAALRTTINEAIGAINNMTKISTFSVNNREQLAIEDCKELLDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLNRLPFRSPRNTTLHETSTDESLEFPEWMTEADQELLKSKPHGKIADAVVALDGSGQYRTINEAVNAAPSHSNRRHVIYVKKGLYKENIDMKKKMTNIMIVGDGIGQTIVTSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGNQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKEYSRTVYINTYMSSMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVKWPGYHVIKDASAAGYFTVQRFLNGGSWLPRTGVKFTAGLSN