Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054118.t1 | KEH40400.1 | 96.9 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 9.40E-174 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054118.t1 | A2Z3C4 | 64.5 | 242 | 84 | 2 | 78 | 317 | 80 | 321 | 3.8e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054118.t1 | A0A072VQL3 | 96.9 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 6.8e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054118 | MS.gene058909 | 0.837921 | 3.91E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene058912 | 0.839552 | 1.48E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene06793 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene054118 | MS.gene07246 | 0.807173 | 5.75E-50 | -1.69E-46 |
| MS.gene054118 | MS.gene072526 | 0.821899 | 3.16E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene072528 | 0.823382 | 1.43E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene08339 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene054118 | MS.gene22789 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene22792 | 0.805484 | 1.31E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene29077 | 0.850478 | 1.65E-60 | -1.69E-46 |
| MS.gene054118 | MS.gene32360 | 0.863055 | 3.27E-64 | -1.69E-46 |
| MS.gene054118 | MS.gene34953 | 0.82017 | 7.90E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene35007 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene37329 | 0.820823 | 5.60E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene42263 | 0.80873 | 2.68E-50 | -1.69E-46 |
| MS.gene054118 | MS.gene44375 | 0.827371 | 1.62E-54 | -1.69E-46 |
| MS.gene054118 | MS.gene47958 | 0.836582 | 8.60E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene47960 | 0.839558 | 1.47E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene47963 | 0.837082 | 6.41E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene53003 | 0.833915 | 4.05E-56 | -1.69E-46 |
| MS.gene054118 | MS.gene53004 | 0.820464 | 6.76E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene53481 | 0.829242 | 5.74E-55 | -1.69E-46 |
| MS.gene054118 | MS.gene62603 | 0.824046 | 9.98E-54 | -1.69E-46 |
| MS.gene054118 | MS.gene62780 | 0.815226 | 1.03E-51 | -1.69E-46 |
| MS.gene054118 | MS.gene70711 | 0.837489 | 5.04E-57 | -1.69E-46 |
| MS.gene054118 | MS.gene71459 | 0.844804 | 6.02E-59 | -1.69E-46 |
| MS.gene054118 | MS.gene71460 | 0.867688 | 1.14E-65 | -1.69E-46 |
| MS.gene054118 | MS.gene71461 | 0.823953 | 1.05E-53 | -1.69E-46 |
| MS.gene054118 | MS.gene71779 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene054118 | MS.gene75220 | 0.847766 | 9.39E-60 | -1.69E-46 |
| MS.gene054118 | MS.gene84497 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene054118 | MS.gene96235 | 0.826999 | 1.99E-54 | -1.69E-46 |
| MS.gene054118 | MS.gene99415 | 0.817798 | 2.74E-52 | -1.69E-46 |
| MS.gene054118 | MS.gene99526 | 0.822285 | 2.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054118.t1 | MTR_1g028320 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 633 |
| MS.gene054118.t1 | MTR_1g028330 | 62.539 | 323 | 112 | 6 | 1 | 319 | 1 | 318 | 2.43e-134 | 384 |
| MS.gene054118.t1 | MTR_3g092110 | 63.636 | 286 | 93 | 5 | 37 | 317 | 30 | 309 | 8.35e-121 | 350 |
| MS.gene054118.t1 | MTR_5g045000 | 47.036 | 253 | 131 | 3 | 68 | 317 | 7 | 259 | 2.63e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054118.t1 | AT5G24400 | 62.903 | 248 | 87 | 3 | 72 | 317 | 81 | 325 | 4.39e-105 | 310 |
| MS.gene054118.t1 | AT3G49360 | 54.286 | 245 | 103 | 4 | 78 | 317 | 11 | 251 | 1.22e-85 | 258 |
| MS.gene054118.t1 | AT1G13700 | 50.000 | 242 | 117 | 2 | 80 | 317 | 20 | 261 | 8.80e-82 | 249 |
| MS.gene054118.t1 | AT1G13700 | 50.000 | 242 | 117 | 2 | 80 | 317 | 20 | 261 | 8.80e-82 | 249 |
| MS.gene054118.t1 | AT1G13700 | 50.000 | 242 | 117 | 2 | 80 | 317 | 20 | 261 | 8.80e-82 | 249 |
| MS.gene054118.t1 | AT5G24410 | 52.653 | 245 | 107 | 4 | 78 | 317 | 17 | 257 | 5.42e-80 | 244 |
| MS.gene054118.t1 | AT5G24420 | 51.837 | 245 | 110 | 4 | 78 | 317 | 11 | 252 | 7.30e-79 | 241 |
Find 67 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCAAAACTGTTTA+AGG | 0.136078 | 1.3:-14448590 | MS.gene054118:CDS |
| ATTCTCTCTGATGGTGGTTT+TGG | 0.280005 | 1.3:+14448787 | None:intergenic |
| AACACTTTATTATGCCTTAG+AGG | 0.288583 | 1.3:+14449981 | None:intergenic |
| AAACCATAGATTGGTCAAAA+TGG | 0.294312 | 1.3:-14449509 | MS.gene054118:CDS |
| AGGAGCATGAGATCAAATTT+TGG | 0.311450 | 1.3:+14448904 | None:intergenic |
| TATTTCACCGTTGCTTTGTC+TGG | 0.353961 | 1.3:-14449807 | MS.gene054118:CDS |
| CAATCTATGGTTTCAGCATA+TGG | 0.367849 | 1.3:+14449519 | None:intergenic |
| TTACTTTCTAAGTTATCCTT+TGG | 0.368874 | 1.3:+14449456 | None:intergenic |
| TACTTTCTAAGTTATCCTTT+GGG | 0.377965 | 1.3:+14449457 | None:intergenic |
| GTGCACAAAATAAGCTACTT+TGG | 0.391008 | 1.3:+14450075 | None:intergenic |
| TGATCTCATGCTCCTAGGTA+TGG | 0.406465 | 1.3:-14448896 | MS.gene054118:CDS |
| TGAAACAACCCTAAGACGTT+TGG | 0.412525 | 1.3:-14448965 | MS.gene054118:CDS |
| GGAACATCTTGCTGTGTCAT+TGG | 0.418210 | 1.3:-14449877 | MS.gene054118:CDS |
| TTCTCCAAGAGGATCAGAAA+TGG | 0.419423 | 1.3:-14448831 | MS.gene054118:CDS |
| AACAAATTCATCAAAGAAAG+AGG | 0.421608 | 1.3:-14449831 | MS.gene054118:CDS |
| TAAACGTTGAGAGGAGGAAT+TGG | 0.435865 | 1.3:+14449033 | None:intergenic |
| GGCATCACTTAAGTGGGAAA+AGG | 0.443000 | 1.3:-14449928 | MS.gene054118:CDS |
| TAACCCATTTCTGATCCTCT+TGG | 0.454962 | 1.3:+14448827 | None:intergenic |
| GAAAAGGTTTCACCTCTTGA+AGG | 0.456560 | 1.3:-14448640 | MS.gene054118:CDS |
| CATGTTGCATCTTTATTCCC+AGG | 0.457125 | 1.3:-14448862 | MS.gene054118:CDS |
| CTCTTGAAGGGGAATTGAAA+TGG | 0.460789 | 1.3:-14448627 | MS.gene054118:CDS |
| AAAGATGCAACATGTCCATC+TGG | 0.461834 | 1.3:+14448871 | None:intergenic |
| TTCACCGTTGCTTTGTCTGG+TGG | 0.468066 | 1.3:-14449804 | MS.gene054118:CDS |
| TAAACATCAGCTGCTCCATC+AGG | 0.473530 | 1.3:+14448988 | None:intergenic |
| AATTATAAGCTTGCCAGTGA+TGG | 0.484242 | 1.3:-14449435 | MS.gene054118:CDS |
| GATCTCATGCTCCTAGGTAT+GGG | 0.491824 | 1.3:-14448895 | MS.gene054118:CDS |
| TGTCATGTTGCCTGTTGAAA+AGG | 0.494449 | 1.3:-14448656 | MS.gene054118:CDS |
| AAATAGAGGCATCACTTAAG+TGG | 0.496228 | 1.3:-14449935 | MS.gene054118:CDS |
| CGCAGTTTACACTGCACTTG+AGG | 0.500062 | 1.3:-14448692 | MS.gene054118:CDS |
| GCATCACTTAAGTGGGAAAA+GGG | 0.504570 | 1.3:-14449927 | MS.gene054118:CDS |
| TCTCCAAGAGGATCAGAAAT+GGG | 0.506655 | 1.3:-14448830 | MS.gene054118:CDS |
| CAGCTGCTCCATCAGGTGGT+AGG | 0.508616 | 1.3:+14448995 | None:intergenic |
| AAATTTGATCTCATGCTCCT+AGG | 0.509138 | 1.3:-14448901 | MS.gene054118:CDS |
| AAAAGGTTTCACCTCTTGAA+GGG | 0.515655 | 1.3:-14448639 | MS.gene054118:CDS |
| AGTCACCACCATTGCAACAT+TGG | 0.519798 | 1.3:+14448732 | None:intergenic |
| CATATGCTGAAACCATAGAT+TGG | 0.520043 | 1.3:-14449518 | MS.gene054118:CDS |
| GATCATTGATCAAGTACCTA+AGG | 0.528998 | 1.3:-14449782 | MS.gene054118:intron |
| AGCTGCTCCATCAGGTGGTA+GGG | 0.529718 | 1.3:+14448996 | None:intergenic |
| GTGAAAGTAATTCTCTCTGA+TGG | 0.540458 | 1.3:+14448778 | None:intergenic |
| TTGGAAGAAGCATTGATCAC+TGG | 0.541052 | 1.3:+14448751 | None:intergenic |
| ATTAGTCAAAGTTGTTGAGA+AGG | 0.549232 | 1.3:+14450109 | None:intergenic |
| GCAATGGTGGTGACTGGCGC+GGG | 0.551673 | 1.3:-14448724 | MS.gene054118:CDS |
| CTCCTAGGTATGGGTCCAGA+TGG | 0.553952 | 1.3:-14448886 | MS.gene054118:CDS |
| AATAGAGGCATCACTTAAGT+GGG | 0.554935 | 1.3:-14449934 | MS.gene054118:CDS |
| TTGAAATGGTACTTAGACAA+AGG | 0.555841 | 1.3:-14448613 | MS.gene054118:CDS |
| TGCTTCTTCCAATGTTGCAA+TGG | 0.565044 | 1.3:-14448740 | MS.gene054118:CDS |
| CATTTCAATTCCCCTTCAAG+AGG | 0.566687 | 1.3:+14448628 | None:intergenic |
| GATGATTCCCTACCACCTGA+TGG | 0.566852 | 1.3:-14449003 | MS.gene054118:CDS |
| AATGTTGCAATGGTGGTGAC+TGG | 0.569664 | 1.3:-14448730 | MS.gene054118:CDS |
| TTCTTCCAATGTTGCAATGG+TGG | 0.573190 | 1.3:-14448737 | MS.gene054118:CDS |
| AAAATTGATGTCTTTAGTGA+TGG | 0.578624 | 1.3:+14450038 | None:intergenic |
| AAAGGGTTATAAGAATGTTG+AGG | 0.580239 | 1.3:-14449910 | MS.gene054118:CDS |
| TGCAATGGTGGTGACTGGCG+CGG | 0.584998 | 1.3:-14448725 | MS.gene054118:CDS |
| AAAGGTTTCACCTCTTGAAG+GGG | 0.598919 | 1.3:-14448638 | MS.gene054118:CDS |
| CTTGGAGAGAAATCCATCAC+TGG | 0.601315 | 1.3:+14449422 | None:intergenic |
| CTTGGAGAAGAGCATGACCT+GGG | 0.611662 | 1.3:+14448845 | None:intergenic |
| TCAATAGCATAAACGTTGAG+AGG | 0.614316 | 1.3:+14449024 | None:intergenic |
| AAAGTAATTCTCTCTGATGG+TGG | 0.620404 | 1.3:+14448781 | None:intergenic |
| CAGTGATGGATTTCTCTCCA+AGG | 0.622114 | 1.3:-14449421 | MS.gene054118:intron |
| TCTTGGAGAAGAGCATGACC+TGG | 0.622800 | 1.3:+14448844 | None:intergenic |
| ACATCAGCTGCTCCATCAGG+TGG | 0.642046 | 1.3:+14448991 | None:intergenic |
| ATAGCATAAACGTTGAGAGG+AGG | 0.649459 | 1.3:+14449027 | None:intergenic |
| AGGTCATGCTCTTCTCCAAG+AGG | 0.654284 | 1.3:-14448842 | MS.gene054118:CDS |
| TGATGAGAGAGTTGTCCCAA+AGG | 0.660738 | 1.3:-14449472 | MS.gene054118:CDS |
| GTCCATCTGGACCCATACCT+AGG | 0.668407 | 1.3:+14448884 | None:intergenic |
| CTCAAGTGCAGTGTAAACTG+CGG | 0.695035 | 1.3:+14448693 | None:intergenic |
| TGATCCACCAGACAAAGCAA+CGG | 0.707909 | 1.3:+14449800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAACATTTATATTAAA+AGG | + | chr1.3:14449384-14449403 | None:intergenic | 10.0% |
| !! | ATTTAAATGGAATTGTAATT+AGG | - | chr1.3:14449052-14449071 | MS.gene054118:intron | 15.0% |
| !! | TTTGTTAACCTAATTTAAAT+AGG | - | chr1.3:14448988-14449007 | MS.gene054118:CDS | 15.0% |
| !!! | ATATGATTTTAATGTTACAT+AGG | - | chr1.3:14449021-14449040 | MS.gene054118:CDS | 15.0% |
| !!! | CAATTTTATGTTTTTATTTC+AGG | - | chr1.3:14449141-14449160 | MS.gene054118:intron | 15.0% |
| !! | AGCCTAGAAATAAATAATTA+AGG | + | chr1.3:14449100-14449119 | None:intergenic | 20.0% |
| !! | ATGATATCGTAATTAGATAA+GGG | + | chr1.3:14449518-14449537 | None:intergenic | 20.0% |
| !! | TATGATATCGTAATTAGATA+AGG | + | chr1.3:14449519-14449538 | None:intergenic | 20.0% |
| !! | TTATCTAATTACGATATCAT+AGG | - | chr1.3:14449518-14449537 | MS.gene054118:CDS | 20.0% |
| !!! | ATAGGTTGGTATAATTTAAA+TGG | - | chr1.3:14449039-14449058 | MS.gene054118:CDS | 20.0% |
| !!! | ATCAAATTTTGGTAATTCAT+TGG | + | chr1.3:14449786-14449805 | None:intergenic | 20.0% |
| !!! | ATGTTTTTATTTCAGGAAAT+TGG | - | chr1.3:14449148-14449167 | MS.gene054118:intron | 20.0% |
| !!! | CACCTTAATTATTTATTTCT+AGG | - | chr1.3:14449095-14449114 | MS.gene054118:intron | 20.0% |
| !!! | GAAATTAATCATTTTGATGT+TGG | - | chr1.3:14449357-14449376 | MS.gene054118:intron | 20.0% |
| ! | AAAATTGATGTCTTTAGTGA+TGG | + | chr1.3:14448663-14448682 | None:intergenic | 25.0% |
| ! | AAATCGAACAACTAATCAAA+TGG | + | chr1.3:14449476-14449495 | None:intergenic | 25.0% |
| ! | AACAAATTCATCAAAGAAAG+AGG | - | chr1.3:14448867-14448886 | MS.gene054118:CDS | 25.0% |
| ! | GAATTAACAATCATCAAACT+TGG | + | chr1.3:14449557-14449576 | None:intergenic | 25.0% |
| ! | TACTTTCTAAGTTATCCTTT+GGG | + | chr1.3:14449244-14449263 | None:intergenic | 25.0% |
| ! | TCGACAATAAGATTTATTGA+CGG | + | chr1.3:14449580-14449599 | None:intergenic | 25.0% |
| ! | TTAACCTAATTTAAATAGGC+TGG | - | chr1.3:14448992-14449011 | MS.gene054118:CDS | 25.0% |
| ! | TTACTTTCTAAGTTATCCTT+TGG | + | chr1.3:14449245-14449264 | None:intergenic | 25.0% |
| !! | ATTTCCATTATTCTTTTGTC+AGG | - | chr1.3:14449640-14449659 | MS.gene054118:intron | 25.0% |
| !!! | GATTTTAATGTTACATAGGT+TGG | - | chr1.3:14449025-14449044 | MS.gene054118:CDS | 25.0% |
| AAAGGGTTATAAGAATGTTG+AGG | - | chr1.3:14448788-14448807 | MS.gene054118:CDS | 30.0% | |
| AACACTTTATTATGCCTTAG+AGG | + | chr1.3:14448720-14448739 | None:intergenic | 30.0% | |
| ATTAGTCAAAGTTGTTGAGA+AGG | + | chr1.3:14448592-14448611 | None:intergenic | 30.0% | |
| CGACAATAAGATTTATTGAC+GGG | + | chr1.3:14449579-14449598 | None:intergenic | 30.0% | |
| TTGAAATGGTACTTAGACAA+AGG | - | chr1.3:14450085-14450104 | MS.gene054118:CDS | 30.0% | |
| TTGTTAAGATTACACACCTT+AGG | + | chr1.3:14448935-14448954 | None:intergenic | 30.0% | |
| ! | AAACCATAGATTGGTCAAAA+TGG | - | chr1.3:14449189-14449208 | MS.gene054118:intron | 30.0% |
| ! | AACCAATCTTTTTCCCAATT+TGG | + | chr1.3:14448692-14448711 | None:intergenic | 30.0% |
| ! | ACCAATCTTTTTCCCAATTT+GGG | + | chr1.3:14448691-14448710 | None:intergenic | 30.0% |
| ! | ATTTTTCCGACACATCTATT+TGG | + | chr1.3:14448747-14448766 | None:intergenic | 30.0% |
| ! | CAATTTTACCAACCCAAATT+GGG | - | chr1.3:14448676-14448695 | MS.gene054118:CDS | 30.0% |
| ! | TCAATTTTACCAACCCAAAT+TGG | - | chr1.3:14448675-14448694 | MS.gene054118:CDS | 30.0% |
| ! | TTTTCACCAAATAGATGTGT+CGG | - | chr1.3:14448738-14448757 | MS.gene054118:CDS | 30.0% |
| AAAAGGTTTCACCTCTTGAA+GGG | - | chr1.3:14450059-14450078 | MS.gene054118:CDS | 35.0% | |
| AAAGTAATTCTCTCTGATGG+TGG | + | chr1.3:14449920-14449939 | None:intergenic | 35.0% | |
| AAATTTGATCTCATGCTCCT+AGG | - | chr1.3:14449797-14449816 | MS.gene054118:CDS | 35.0% | |
| AATTATAAGCTTGCCAGTGA+TGG | - | chr1.3:14449263-14449282 | MS.gene054118:intron | 35.0% | |
| ACCCAAATTGGGAAAAAGAT+TGG | - | chr1.3:14448687-14448706 | MS.gene054118:CDS | 35.0% | |
| ACCTAATTTAAATAGGCTGG+TGG | - | chr1.3:14448995-14449014 | MS.gene054118:CDS | 35.0% | |
| CAATCTATGGTTTCAGCATA+TGG | + | chr1.3:14449182-14449201 | None:intergenic | 35.0% | |
| CATATGCTGAAACCATAGAT+TGG | - | chr1.3:14449180-14449199 | MS.gene054118:intron | 35.0% | |
| CTTATTGTCGATCTTTAGTG+AGG | - | chr1.3:14449589-14449608 | MS.gene054118:intron | 35.0% | |
| GATCATTGATCAAGTACCTA+AGG | - | chr1.3:14448916-14448935 | MS.gene054118:CDS | 35.0% | |
| GTGAAAGTAATTCTCTCTGA+TGG | + | chr1.3:14449923-14449942 | None:intergenic | 35.0% | |
| GTGCACAAAATAAGCTACTT+TGG | + | chr1.3:14448626-14448645 | None:intergenic | 35.0% | |
| TAGATGTGTCGGAAAAATAG+AGG | - | chr1.3:14448749-14448768 | MS.gene054118:CDS | 35.0% | |
| TCAATAGCATAAACGTTGAG+AGG | + | chr1.3:14449677-14449696 | None:intergenic | 35.0% | |
| TCCACCAGCCTATTTAAATT+AGG | + | chr1.3:14448999-14449018 | None:intergenic | 35.0% | |
| TGCTTGAAGAAGAATGATGA+TGG | - | chr1.3:14449330-14449349 | MS.gene054118:intron | 35.0% | |
| TTCAAGCAAAACAATCAACC+TGG | + | chr1.3:14449318-14449337 | None:intergenic | 35.0% | |
| ! | ATCTTTTTCCCAATTTGGGT+TGG | + | chr1.3:14448687-14448706 | None:intergenic | 35.0% |
| ! | GAATGTTGAGGTTTTCAGTA+AGG | - | chr1.3:14448800-14448819 | MS.gene054118:CDS | 35.0% |
| ! | GCTTTTAACCAAACGTCTTA+GGG | + | chr1.3:14449744-14449763 | None:intergenic | 35.0% |
| ! | GTCAAAATGGCATGTTTTCT+GGG | - | chr1.3:14449202-14449221 | MS.gene054118:intron | 35.0% |
| ! | TGCTGCTTCAAAACTGTTTA+AGG | - | chr1.3:14450108-14450127 | MS.gene054118:CDS | 35.0% |
| ! | TGCTTTTAACCAAACGTCTT+AGG | + | chr1.3:14449745-14449764 | None:intergenic | 35.0% |
| !! | AAATAGAGGCATCACTTAAG+TGG | - | chr1.3:14448763-14448782 | MS.gene054118:CDS | 35.0% |
| !! | AATAGAGGCATCACTTAAGT+GGG | - | chr1.3:14448764-14448783 | MS.gene054118:CDS | 35.0% |
| !! | AGGAGCATGAGATCAAATTT+TGG | + | chr1.3:14449797-14449816 | None:intergenic | 35.0% |
| !!! | AGATTGGTTTTCAACCTCTA+AGG | - | chr1.3:14448703-14448722 | MS.gene054118:CDS | 35.0% |
| !!! | ATGCCATTTTGACCAATCTA+TGG | + | chr1.3:14449195-14449214 | None:intergenic | 35.0% |
| AAAGATGCAACATGTCCATC+TGG | + | chr1.3:14449830-14449849 | None:intergenic | 40.0% | |
| AAAGGTTTCACCTCTTGAAG+GGG | - | chr1.3:14450060-14450079 | MS.gene054118:CDS | 40.0% | |
| AGGTAATTAACTCATGTGCC+AGG | - | chr1.3:14449297-14449316 | MS.gene054118:intron | 40.0% | |
| ATAGCATAAACGTTGAGAGG+AGG | + | chr1.3:14449674-14449693 | None:intergenic | 40.0% | |
| ATTACGATATCATAGGTGCG+AGG | - | chr1.3:14449525-14449544 | MS.gene054118:CDS | 40.0% | |
| CATGTTGCATCTTTATTCCC+AGG | - | chr1.3:14449836-14449855 | MS.gene054118:CDS | 40.0% | |
| CATTTCAATTCCCCTTCAAG+AGG | + | chr1.3:14450073-14450092 | None:intergenic | 40.0% | |
| CTCTTGAAGGGGAATTGAAA+TGG | - | chr1.3:14450071-14450090 | MS.gene054118:CDS | 40.0% | |
| GAAAAGGTTTCACCTCTTGA+AGG | - | chr1.3:14450058-14450077 | MS.gene054118:CDS | 40.0% | |
| GCATCACTTAAGTGGGAAAA+GGG | - | chr1.3:14448771-14448790 | MS.gene054118:CDS | 40.0% | |
| GGCACATGAGTTAATTACCT+TGG | + | chr1.3:14449297-14449316 | None:intergenic | 40.0% | |
| GGCACCTGACAAAAGAATAA+TGG | + | chr1.3:14449647-14449666 | None:intergenic | 40.0% | |
| TAAACGTTGAGAGGAGGAAT+TGG | + | chr1.3:14449668-14449687 | None:intergenic | 40.0% | |
| TAACCCATTTCTGATCCTCT+TGG | + | chr1.3:14449874-14449893 | None:intergenic | 40.0% | |
| TACTAGCATATCGTGACATG+TGG | - | chr1.3:14449430-14449449 | MS.gene054118:CDS | 40.0% | |
| TCTCCAAGAGGATCAGAAAT+GGG | - | chr1.3:14449868-14449887 | MS.gene054118:CDS | 40.0% | |
| TGAAACAACCCTAAGACGTT+TGG | - | chr1.3:14449733-14449752 | MS.gene054118:intron | 40.0% | |
| TGCTTCTTCCAATGTTGCAA+TGG | - | chr1.3:14449958-14449977 | MS.gene054118:CDS | 40.0% | |
| TGTCATGTTGCCTGTTGAAA+AGG | - | chr1.3:14450042-14450061 | MS.gene054118:CDS | 40.0% | |
| TTCTCCAAGAGGATCAGAAA+TGG | - | chr1.3:14449867-14449886 | MS.gene054118:CDS | 40.0% | |
| TTCTTCCAATGTTGCAATGG+TGG | - | chr1.3:14449961-14449980 | MS.gene054118:CDS | 40.0% | |
| ! | AGAGGTGAAACCTTTTCAAC+AGG | + | chr1.3:14450055-14450074 | None:intergenic | 40.0% |
| ! | GGTCAAAATGGCATGTTTTC+TGG | - | chr1.3:14449201-14449220 | MS.gene054118:intron | 40.0% |
| ! | TATTTCACCGTTGCTTTGTC+TGG | - | chr1.3:14448891-14448910 | MS.gene054118:CDS | 40.0% |
| !! | TTGGAAGAAGCATTGATCAC+TGG | + | chr1.3:14449950-14449969 | None:intergenic | 40.0% |
| !!! | ATTCTCTCTGATGGTGGTTT+TGG | + | chr1.3:14449914-14449933 | None:intergenic | 40.0% |
| AGTCACCACCATTGCAACAT+TGG | + | chr1.3:14449969-14449988 | None:intergenic | 45.0% | |
| CTCAAGTGCAGTGTAAACTG+CGG | + | chr1.3:14450008-14450027 | None:intergenic | 45.0% | |
| CTTGGAGAGAAATCCATCAC+TGG | + | chr1.3:14449279-14449298 | None:intergenic | 45.0% | |
| GATCTCATGCTCCTAGGTAT+GGG | - | chr1.3:14449803-14449822 | MS.gene054118:CDS | 45.0% | |
| GGCATCACTTAAGTGGGAAA+AGG | - | chr1.3:14448770-14448789 | MS.gene054118:CDS | 45.0% | |
| TAAACATCAGCTGCTCCATC+AGG | + | chr1.3:14449713-14449732 | None:intergenic | 45.0% | |
| TGATCCACCAGACAAAGCAA+CGG | + | chr1.3:14448901-14448920 | None:intergenic | 45.0% | |
| TGATCTCATGCTCCTAGGTA+TGG | - | chr1.3:14449802-14449821 | MS.gene054118:CDS | 45.0% | |
| TGATGAGAGAGTTGTCCCAA+AGG | - | chr1.3:14449226-14449245 | MS.gene054118:intron | 45.0% | |
| ! | AATGTTGCAATGGTGGTGAC+TGG | - | chr1.3:14449968-14449987 | MS.gene054118:CDS | 45.0% |
| ! | GGAACATCTTGCTGTGTCAT+TGG | - | chr1.3:14448821-14448840 | MS.gene054118:CDS | 45.0% |
| !! | CAGTGATGGATTTCTCTCCA+AGG | - | chr1.3:14449277-14449296 | MS.gene054118:intron | 45.0% |
| AGGTCATGCTCTTCTCCAAG+AGG | - | chr1.3:14449856-14449875 | MS.gene054118:CDS | 50.0% | |
| CGCAGTTTACACTGCACTTG+AGG | - | chr1.3:14450006-14450025 | MS.gene054118:CDS | 50.0% | |
| GATGATTCCCTACCACCTGA+TGG | - | chr1.3:14449695-14449714 | MS.gene054118:intron | 50.0% | |
| ! | CTTGGAGAAGAGCATGACCT+GGG | + | chr1.3:14449856-14449875 | None:intergenic | 50.0% |
| ! | TCTTGGAGAAGAGCATGACC+TGG | + | chr1.3:14449857-14449876 | None:intergenic | 50.0% |
| ! | TTCACCGTTGCTTTGTCTGG+TGG | - | chr1.3:14448894-14448913 | MS.gene054118:CDS | 50.0% |
| !!! | GTGGTTTTGGTGAGTCAGTG+AGG | + | chr1.3:14449901-14449920 | None:intergenic | 50.0% |
| ACATCAGCTGCTCCATCAGG+TGG | + | chr1.3:14449710-14449729 | None:intergenic | 55.0% | |
| AGCTGCTCCATCAGGTGGTA+GGG | + | chr1.3:14449705-14449724 | None:intergenic | 55.0% | |
| CTCCTAGGTATGGGTCCAGA+TGG | - | chr1.3:14449812-14449831 | MS.gene054118:CDS | 55.0% | |
| GTCCATCTGGACCCATACCT+AGG | + | chr1.3:14449817-14449836 | None:intergenic | 55.0% | |
| CAGCTGCTCCATCAGGTGGT+AGG | + | chr1.3:14449706-14449725 | None:intergenic | 60.0% | |
| ! | TGCAATGGTGGTGACTGGCG+CGG | - | chr1.3:14449973-14449992 | MS.gene054118:CDS | 60.0% |
| ! | GCAATGGTGGTGACTGGCGC+GGG | - | chr1.3:14449974-14449993 | MS.gene054118:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 14448585 | 14450135 | 14448585 | ID=MS.gene054118 |
| chr1.3 | mRNA | 14448585 | 14450135 | 14448585 | ID=MS.gene054118.t1;Parent=MS.gene054118 |
| chr1.3 | exon | 14449783 | 14450135 | 14449783 | ID=MS.gene054118.t1.exon1;Parent=MS.gene054118.t1 |
| chr1.3 | CDS | 14449783 | 14450135 | 14449783 | ID=cds.MS.gene054118.t1;Parent=MS.gene054118.t1 |
| chr1.3 | exon | 14449422 | 14449557 | 14449422 | ID=MS.gene054118.t1.exon2;Parent=MS.gene054118.t1 |
| chr1.3 | CDS | 14449422 | 14449557 | 14449422 | ID=cds.MS.gene054118.t1;Parent=MS.gene054118.t1 |
| chr1.3 | exon | 14448585 | 14449058 | 14448585 | ID=MS.gene054118.t1.exon3;Parent=MS.gene054118.t1 |
| chr1.3 | CDS | 14448585 | 14449058 | 14448585 | ID=cds.MS.gene054118.t1;Parent=MS.gene054118.t1 |
| Gene Sequence |
| Protein sequence |
