AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23118

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23118.t1 MTR_7g112700 99.344 305 2 0 1 305 1 305 0.0 630
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23118.t1 AT3G05520 71.525 295 84 0 11 305 41 335 2.06e-167 468
MS.gene23118.t1 AT3G05520 71.525 295 84 0 11 305 14 308 2.73e-167 467
MS.gene23118.t1 AT3G05520 71.525 295 84 0 11 305 14 308 1.89e-166 468

Find 60 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTGTCTACTGTGTAAA+TGG 0.194304 7.2:+4097086 MS.gene23118:CDS
ATGGGAGTTGGTGCTCAATT+TGG 0.234047 7.2:+4097314 MS.gene23118:CDS
AAGTGTGATTTGTTGTAAAT+TGG 0.238558 7.2:-4095495 None:intergenic
GGCATAGCCCACAAAATTTC+TGG 0.238634 7.2:+4097168 MS.gene23118:CDS
ATTGCTACTTGAGCAGTTCT+AGG 0.251268 7.2:-4095780 None:intergenic
CAACAAACAGTGGACGTAAA+AGG 0.272987 7.2:+4097358 MS.gene23118:CDS
CCTTCCTGATTCTACTTTCA+AGG 0.294319 7.2:+4097955 MS.gene23118:CDS
CTGCATACATTGAAGAATTT+CGG 0.307423 7.2:+4096174 MS.gene23118:CDS
TAGACAGAACAGACACCTTT+TGG 0.313335 7.2:-4097074 None:intergenic
GGAAATAAGGTGCGGGTGAC+TGG 0.335841 7.2:-4098081 None:intergenic
CAGGTATTGGTTACTTCATA+TGG 0.389015 7.2:+4095729 MS.gene23118:intron
TTTCTTCTCAATTCTCCTCC+TGG 0.404211 7.2:+4095306 MS.gene23118:CDS
ATGGCAAGCGCACAATCATC+AGG 0.408097 7.2:-4097757 None:intergenic
ATAATTTATTGCAGGATCTT+CGG 0.419155 7.2:+4098049 MS.gene23118:intron
TGTTTATTGCAGATTCAGTC+TGG 0.425383 7.2:+4097016 MS.gene23118:intron
GTGACGAATAATGCTTGATA+TGG 0.433415 7.2:-4097776 None:intergenic
AGTGTTATGCCATGGAAATA+AGG 0.442011 7.2:-4098094 None:intergenic
GTTGAAGAAGTTTATCCAAA+AGG 0.446811 7.2:+4097059 MS.gene23118:CDS
GGACGTAAAAGGGAAATTGC+AGG 0.448824 7.2:+4097369 MS.gene23118:CDS
GAAATTCAATACGTTGCAAA+AGG 0.451513 7.2:+4095330 MS.gene23118:CDS
CGAACCATCATCGTTGAGAA+TGG 0.453171 7.2:-4095445 None:intergenic
AACAAACAGTGGACGTAAAA+GGG 0.455021 7.2:+4097359 MS.gene23118:CDS
GTTACATCTCCGCTTCGGTC+AGG 0.469021 7.2:-4095534 None:intergenic
GGTACCTTGAAAGTAGAATC+AGG 0.469238 7.2:-4097959 None:intergenic
AAGCAAGGTACTCTGTTTCA+TGG 0.469951 7.2:-4097798 None:intergenic
GTTGTAAATTGGAAATGCTT+CGG 0.474209 7.2:-4095484 None:intergenic
CTGTTGTGATTTCTGCTGCT+AGG 0.485098 7.2:+4097147 MS.gene23118:CDS
TTGTTTATAGCAATGGGAGT+TGG 0.503772 7.2:+4097302 MS.gene23118:intron
ATCTCAAAAGAACTTGGCAT+TGG 0.506508 7.2:+4098141 MS.gene23118:CDS
GCAAGCTCAAAATCAGAACC+TGG 0.521132 7.2:-4097125 None:intergenic
AAATCCATTCTCAACGATGA+TGG 0.529327 7.2:+4095441 MS.gene23118:CDS
AGTTAGTTACATCTCCGCTT+CGG 0.532930 7.2:-4095539 None:intergenic
GTTCTGTCTACTGTGTAAAT+GGG 0.536017 7.2:+4097087 MS.gene23118:CDS
AGAGACATCTCAAAAGAACT+TGG 0.537783 7.2:+4098135 MS.gene23118:CDS
TACTTCATATGGCGAGCTTG+AGG 0.551778 7.2:+4095740 MS.gene23118:CDS
TCACCCGCACCTTATTTCCA+TGG 0.565832 7.2:+4098085 MS.gene23118:CDS
AATTCTTCAATGTATGCAGA+TGG 0.567391 7.2:-4096170 None:intergenic
AATTGCAAAGTGTTATGCCA+TGG 0.570664 7.2:-4098102 None:intergenic
TACAGAGGTGAGACCTGCAC+TGG 0.572920 7.2:+4096136 MS.gene23118:CDS
GGAAGTTCTTCATCCAGTGC+AGG 0.573658 7.2:-4096149 None:intergenic
GGGAAGGATACTGAGGGCCC+AGG 0.574847 7.2:+4097107 MS.gene23118:CDS
GCAACGTATTGAATTTCACC+AGG 0.590563 7.2:-4095324 None:intergenic
CAAGCTCAAAATCAGAACCT+GGG 0.599793 7.2:-4097124 None:intergenic
CCTTGAAAGTAGAATCAGGA+AGG 0.604482 7.2:-4097955 None:intergenic
TGTCTACTGTGTAAATGGGA+AGG 0.606579 7.2:+4097091 MS.gene23118:CDS
ACACACTTACTTGTTTAACA+TGG 0.606781 7.2:-4095809 None:intergenic
TGGCAAGCGCACAATCATCA+GGG 0.608171 7.2:-4097756 None:intergenic
CTTTCAATGCCTGACCGAAG+CGG 0.608367 7.2:+4095525 MS.gene23118:CDS
AGAGTACCTTGCTTCTCTTG+AGG 0.615925 7.2:+4097807 MS.gene23118:CDS
ATTTATTGCAGGATCTTCGG+AGG 0.625709 7.2:+4098052 MS.gene23118:intron
ATGCCATGGAAATAAGGTGC+GGG 0.634497 7.2:-4098088 None:intergenic
AGAAAGTTGAAATCGCGAAG+TGG 0.636965 7.2:+4095283 MS.gene23118:CDS
TCAGAACCTCAAGAGAAGCA+AGG 0.655359 7.2:-4097813 None:intergenic
TGTAAATGGGAAGGATACTG+AGG 0.655670 7.2:+4097100 MS.gene23118:CDS
GTAAATGGGAAGGATACTGA+GGG 0.655998 7.2:+4097101 MS.gene23118:CDS
CAAAGACGACCAACAAACAG+TGG 0.675897 7.2:+4097348 MS.gene23118:CDS
GGCAAGCGCACAATCATCAG+GGG 0.679461 7.2:-4097755 None:intergenic
TATGTTTCAGGTCTGTACAG+AGG 0.688165 7.2:+4096121 MS.gene23118:intron
ACGTATTGAATTTCACCAGG+AGG 0.702006 7.2:-4095321 None:intergenic
TATGCCATGGAAATAAGGTG+CGG 0.767155 7.2:-4098089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATTATGTTAAAGT+AGG - chr7.2:4097444-4097463 None:intergenic 15.0%
!! AAAATGATTATGTTAAAGTA+GGG - chr7.2:4097443-4097462 None:intergenic 15.0%
!! AATATAGGATTATATAATAG+AGG - chr7.2:4097984-4098003 None:intergenic 15.0%
!! ATATAGGATTATATAATAGA+GGG - chr7.2:4097983-4098002 None:intergenic 15.0%
!! TTTGTATATATATTCGAAAA+TGG + chr7.2:4097677-4097696 MS.gene23118:intron 15.0%
!!! AATTTTTCAATTAATTGGAT+CGG + chr7.2:4095619-4095638 MS.gene23118:intron 15.0%
!!! ATCATTTTTATCCTATTTTT+AGG + chr7.2:4097455-4097474 MS.gene23118:intron 15.0%
!!! TAATTCTTTTGGTTAAAATA+AGG + chr7.2:4096762-4096781 MS.gene23118:intron 15.0%
!!! TAATTGTTTTCTAATTCTTA+GGG + chr7.2:4095574-4095593 MS.gene23118:intron 15.0%
!!! TTAATTGTTTTCTAATTCTT+AGG + chr7.2:4095573-4095592 MS.gene23118:intron 15.0%
!!! TTTTAAAATGACTGATAAAT+TGG + chr7.2:4096831-4096850 MS.gene23118:intron 15.0%
!! AAGTAAAATATTTGAGAGAA+AGG - chr7.2:4096721-4096740 None:intergenic 20.0%
!! AATTTCAATAAGCAGAAAAT+TGG - chr7.2:4095920-4095939 None:intergenic 20.0%
!! ATTAATACAACAAAGAATTG+TGG - chr7.2:4096746-4096765 None:intergenic 20.0%
!! ATTAGAAGGAAATATTTAGT+TGG + chr7.2:4095984-4096003 MS.gene23118:intron 20.0%
!! ATTAGATTGTCAAAAATAAG+TGG - chr7.2:4097636-4097655 None:intergenic 20.0%
!! TATATATACAAAAAGAGACA+AGG - chr7.2:4097669-4097688 None:intergenic 20.0%
!! TATTAAAGAAGAGATCTATT+TGG - chr7.2:4096446-4096465 None:intergenic 20.0%
!! TGCAATAAATTATAATCAGA+AGG - chr7.2:4098042-4098061 None:intergenic 20.0%
!! TTCTGATTATAATTTATTGC+AGG + chr7.2:4098041-4098060 MS.gene23118:intron 20.0%
!! TTTACTTAAAAATGAGCTTT+AGG + chr7.2:4095848-4095867 MS.gene23118:intron 20.0%
!!! CTTTGTTGTATTAATTCTTT+TGG + chr7.2:4096751-4096770 MS.gene23118:intron 20.0%
!!! CTTTTGATTTATTTATGTTC+AGG + chr7.2:4097732-4097751 MS.gene23118:intron 20.0%
!!! TTTTTATCCTATTTTTAGGT+CGG + chr7.2:4097459-4097478 MS.gene23118:intron 20.0%
! AAAATCTCAATCATGGAAAT+TGG - chr7.2:4096209-4096228 None:intergenic 25.0%
! AAATATTTAGTTGGAGGTTA+GGG + chr7.2:4095993-4096012 MS.gene23118:intron 25.0%
! AAGATTAACGGAATATCAAA+TGG - chr7.2:4096242-4096261 None:intergenic 25.0%
! ACAAATCTATACTTGTCAAA+AGG - chr7.2:4096540-4096559 None:intergenic 25.0%
! AGTAAAACAGCAATTAATCT+TGG + chr7.2:4096806-4096825 MS.gene23118:intron 25.0%
! ATAATTTATTGCAGGATCTT+CGG + chr7.2:4098049-4098068 MS.gene23118:intron 25.0%
! ATTCGAAAATGGTAAGATAT+AGG + chr7.2:4097688-4097707 MS.gene23118:intron 25.0%
! CATAGGCTTAACATAAATAT+AGG - chr7.2:4097999-4098018 None:intergenic 25.0%
! GACAAATTGAAATGTAAAAG+TGG - chr7.2:4095395-4095414 None:intergenic 25.0%
! GACAATTTGATATATGTTTC+AGG + chr7.2:4096109-4096128 MS.gene23118:intron 25.0%
! GACATAAAAAATCTCAATCA+TGG - chr7.2:4096216-4096235 None:intergenic 25.0%
! GTGAAAACATTGAAATTAGA+AGG + chr7.2:4095970-4095989 MS.gene23118:intron 25.0%
! TAAACAAAAGCCAAAGAAAA+AGG - chr7.2:4097289-4097308 None:intergenic 25.0%
! TAAAGCAAAACAGGAAAATT+TGG + chr7.2:4096018-4096037 MS.gene23118:intron 25.0%
! TAGGTAAGATCATTTATGTT+TGG + chr7.2:4095867-4095886 MS.gene23118:intron 25.0%
! TCACTTCAGTAAAAGATTAA+CGG - chr7.2:4096254-4096273 None:intergenic 25.0%
!! AACACTTTAAAAGAAAAGGA+GGG + chr7.2:4096875-4096894 MS.gene23118:intron 25.0%
!! ACAATGATTTTTGATGTTGA+GGG + chr7.2:4096279-4096298 MS.gene23118:intron 25.0%
!!! AAGTGTGATTTGTTGTAAAT+TGG - chr7.2:4095498-4095517 None:intergenic 25.0%
AACATCAAAAATCATTGTGC+GGG - chr7.2:4096277-4096296 None:intergenic 30.0%
AATTCTTCAATGTATGCAGA+TGG - chr7.2:4096173-4096192 None:intergenic 30.0%
ACACACTTACTTGTTTAACA+TGG - chr7.2:4095812-4095831 None:intergenic 30.0%
AGAAGGAAATATTTAGTTGG+AGG + chr7.2:4095987-4096006 MS.gene23118:intron 30.0%
CAAAAATCAACGACTATCAT+AGG - chr7.2:4098016-4098035 None:intergenic 30.0%
CAACATCAAAAATCATTGTG+CGG - chr7.2:4096278-4096297 None:intergenic 30.0%
CTGCATACATTGAAGAATTT+CGG + chr7.2:4096174-4096193 MS.gene23118:CDS 30.0%
GAAATATTTAGTTGGAGGTT+AGG + chr7.2:4095992-4096011 MS.gene23118:intron 30.0%
GAAATTCAATACGTTGCAAA+AGG + chr7.2:4095330-4095349 MS.gene23118:CDS 30.0%
GATTGTCAAAAATAAGTGGA+TGG - chr7.2:4097632-4097651 None:intergenic 30.0%
GTTGAAGAAGTTTATCCAAA+AGG + chr7.2:4097059-4097078 MS.gene23118:CDS 30.0%
GTTGTAAATTGGAAATGCTT+CGG - chr7.2:4095487-4095506 None:intergenic 30.0%
TGCTTATTGAAATTGCATGT+TGG + chr7.2:4095926-4095945 MS.gene23118:intron 30.0%
TTTATGTTTGGATTTGTGTG+TGG + chr7.2:4095879-4095898 MS.gene23118:intron 30.0%
! AGTTAGTACTCCTTTTTCTT+TGG + chr7.2:4097276-4097295 MS.gene23118:intron 30.0%
! CAACACTTTAAAAGAAAAGG+AGG + chr7.2:4096874-4096893 MS.gene23118:intron 30.0%
! CAATGATTTTTGATGTTGAG+GGG + chr7.2:4096280-4096299 MS.gene23118:intron 30.0%
! CACAATGATTTTTGATGTTG+AGG + chr7.2:4096278-4096297 MS.gene23118:intron 30.0%
! GAGCAACACTTTAAAAGAAA+AGG + chr7.2:4096871-4096890 MS.gene23118:intron 30.0%
!! AGTCAAAGAATGCTGATTTA+TGG - chr7.2:4097562-4097581 None:intergenic 30.0%
!! TGGCTTTTGTTTATAGCAAT+GGG + chr7.2:4097296-4097315 MS.gene23118:intron 30.0%
!! TTCGTTTTAAGCGTCTTTTA+AGG + chr7.2:4096648-4096667 MS.gene23118:intron 30.0%
!! TTGGCTTTTGTTTATAGCAA+TGG + chr7.2:4097295-4097314 MS.gene23118:intron 30.0%
AAATCCATTCTCAACGATGA+TGG + chr7.2:4095441-4095460 MS.gene23118:CDS 35.0%
AACAAACAGTGGACGTAAAA+GGG + chr7.2:4097359-4097378 MS.gene23118:CDS 35.0%
ACAGCAACACAAGTCATATT+TGG - chr7.2:4096052-4096071 None:intergenic 35.0%
AGAGACATCTCAAAAGAACT+TGG + chr7.2:4098135-4098154 MS.gene23118:CDS 35.0%
AGTGTTATGCCATGGAAATA+AGG - chr7.2:4098097-4098116 None:intergenic 35.0%
ATATGAAGCCTGTCAAGTTA+TGG - chr7.2:4097930-4097949 None:intergenic 35.0%
ATCTCAAAAGAACTTGGCAT+TGG + chr7.2:4098141-4098160 MS.gene23118:CDS 35.0%
GAATTCGATTTCTTGTAGCT+AGG + chr7.2:4097834-4097853 MS.gene23118:intron 35.0%
GGAATGAAAATGAAATGCTG+AGG - chr7.2:4095374-4095393 None:intergenic 35.0%
GTGACGAATAATGCTTGATA+TGG - chr7.2:4097779-4097798 None:intergenic 35.0%
GTTAGGGTATAAAGCAAAAC+AGG + chr7.2:4096009-4096028 MS.gene23118:intron 35.0%
GTTCTGTCTACTGTGTAAAT+GGG + chr7.2:4097087-4097106 MS.gene23118:CDS 35.0%
TGAAATTGCATGTTGGAACT+TGG + chr7.2:4095933-4095952 MS.gene23118:intron 35.0%
TGTTCTGTCTACTGTGTAAA+TGG + chr7.2:4097086-4097105 MS.gene23118:CDS 35.0%
TGTTTATTGCAGATTCAGTC+TGG + chr7.2:4097016-4097035 MS.gene23118:intron 35.0%
TTGTTTATAGCAATGGGAGT+TGG + chr7.2:4097302-4097321 MS.gene23118:intron 35.0%
! AATTGCAAAGTGTTATGCCA+TGG - chr7.2:4098105-4098124 None:intergenic 35.0%
! CAAAAGGCATGATTCATGAT+AGG - chr7.2:4096524-4096543 None:intergenic 35.0%
! CAAAGATGCAACTCTTTTTC+AGG + chr7.2:4097533-4097552 MS.gene23118:CDS 35.0%
! TCACACACCAGAAATTTTGT+GGG - chr7.2:4097178-4097197 None:intergenic 35.0%
! TTCACACACCAGAAATTTTG+TGG - chr7.2:4097179-4097198 None:intergenic 35.0%
!! CAGGTATTGGTTACTTCATA+TGG + chr7.2:4095729-4095748 MS.gene23118:intron 35.0%
!! TGTGTGTGGAGAGTATTATA+AGG + chr7.2:4095893-4095912 MS.gene23118:intron 35.0%
ACATTGTAACTAACCCCATC+TGG - chr7.2:4096501-4096520 None:intergenic 40.0%
ACGTATTGAATTTCACCAGG+AGG - chr7.2:4095324-4095343 None:intergenic 40.0%
AGAAAGTTGAAATCGCGAAG+TGG + chr7.2:4095283-4095302 MS.gene23118:CDS 40.0%
AGTTAGTTACATCTCCGCTT+CGG - chr7.2:4095542-4095561 None:intergenic 40.0%
ATAAGTGGATGGACATGTAC+AGG - chr7.2:4097621-4097640 None:intergenic 40.0%
ATCTGGTGGGAAAACTGAAA+AGG - chr7.2:4096484-4096503 None:intergenic 40.0%
ATGATGCATGCAAAAGACAC+AGG - chr7.2:4096976-4096995 None:intergenic 40.0%
ATTTATTGCAGGATCTTCGG+AGG + chr7.2:4098052-4098071 MS.gene23118:intron 40.0%
CAACAAACAGTGGACGTAAA+AGG + chr7.2:4097358-4097377 MS.gene23118:CDS 40.0%
CAAGCTCAAAATCAGAACCT+GGG - chr7.2:4097127-4097146 None:intergenic 40.0%
CATATATGAGTCTCACTTCC+TGG - chr7.2:4096607-4096626 None:intergenic 40.0%
CCTTCCTGATTCTACTTTCA+AGG + chr7.2:4097955-4097974 MS.gene23118:CDS 40.0%
CCTTGAAAGTAGAATCAGGA+AGG - chr7.2:4097958-4097977 None:intergenic 40.0%
CTCAATCATGGAAATTGGAG+AGG - chr7.2:4096204-4096223 None:intergenic 40.0%
GCAACGTATTGAATTTCACC+AGG - chr7.2:4095327-4095346 None:intergenic 40.0%
GCTAATGACCATAACTTGAC+AGG + chr7.2:4097919-4097938 MS.gene23118:intron 40.0%
GGTACCTTGAAAGTAGAATC+AGG - chr7.2:4097962-4097981 None:intergenic 40.0%
GTAAATGGGAAGGATACTGA+GGG + chr7.2:4097101-4097120 MS.gene23118:CDS 40.0%
TAACACAAATCCCCTGACTT+GGG + chr7.2:4095693-4095712 MS.gene23118:intron 40.0%
TAAGTTCACGCAGATGATTG+AGG - chr7.2:4096394-4096413 None:intergenic 40.0%
TATGCCATGGAAATAAGGTG+CGG - chr7.2:4098092-4098111 None:intergenic 40.0%
TGGGAAAACTGAAAAGGCTT+TGG - chr7.2:4096478-4096497 None:intergenic 40.0%
TGTAAATGGGAAGGATACTG+AGG + chr7.2:4097100-4097119 MS.gene23118:CDS 40.0%
TGTCTACTGTGTAAATGGGA+AGG + chr7.2:4097091-4097110 MS.gene23118:CDS 40.0%
TTTCTTCTCAATTCTCCTCC+TGG + chr7.2:4095306-4095325 MS.gene23118:CDS 40.0%
TTTGTGCTAAGCTGTATCGT+TGG + chr7.2:4096073-4096092 MS.gene23118:intron 40.0%
! AAGCAAGGTACTCTGTTTCA+TGG - chr7.2:4097801-4097820 None:intergenic 40.0%
! ATTGCTACTTGAGCAGTTCT+AGG - chr7.2:4095783-4095802 None:intergenic 40.0%
! CTTTTACGTCCACTGTTTGT+TGG - chr7.2:4097360-4097379 None:intergenic 40.0%
! GAAAACTGAAAAGGCTTTGG+TGG - chr7.2:4096475-4096494 None:intergenic 40.0%
! TAGACAGAACAGACACCTTT+TGG - chr7.2:4097077-4097096 None:intergenic 40.0%
! TATGTTTCAGGTCTGTACAG+AGG + chr7.2:4096121-4096140 MS.gene23118:intron 40.0%
! TTTCAGTTTTCCCACCAGAT+GGG + chr7.2:4096484-4096503 MS.gene23118:intron 40.0%
! TTTTCAGTTTTCCCACCAGA+TGG + chr7.2:4096483-4096502 MS.gene23118:intron 40.0%
!! AAAGAAAAGGAGGGAGCATT+TGG + chr7.2:4096884-4096903 MS.gene23118:intron 40.0%
!! ATGAGCACCGACCTAAAAAT+AGG - chr7.2:4097469-4097488 None:intergenic 40.0%
!!! GGTGCTCATTATTTTGAGGA+AGG + chr7.2:4097480-4097499 MS.gene23118:CDS 40.0%
ATGCCATGGAAATAAGGTGC+GGG - chr7.2:4098091-4098110 None:intergenic 45.0%
CAAAGACGACCAACAAACAG+TGG + chr7.2:4097348-4097367 MS.gene23118:CDS 45.0%
CATCATCGCTTGCATAACAC+AGG + chr7.2:4096990-4097009 MS.gene23118:intron 45.0%
CGAACCATCATCGTTGAGAA+TGG - chr7.2:4095448-4095467 None:intergenic 45.0%
CTCACTTCCTGGCTACAATA+GGG - chr7.2:4096596-4096615 None:intergenic 45.0%
CTGTTGTGATTTCTGCTGCT+AGG + chr7.2:4097147-4097166 MS.gene23118:CDS 45.0%
GCAAGCTCAAAATCAGAACC+TGG - chr7.2:4097128-4097147 None:intergenic 45.0%
GGACGTAAAAGGGAAATTGC+AGG + chr7.2:4097369-4097388 MS.gene23118:CDS 45.0%
GGCATAGCCCACAAAATTTC+TGG + chr7.2:4097168-4097187 MS.gene23118:CDS 45.0%
GTAACACAAATCCCCTGACT+TGG + chr7.2:4095692-4095711 MS.gene23118:intron 45.0%
TACTTCATATGGCGAGCTTG+AGG + chr7.2:4095740-4095759 MS.gene23118:CDS 45.0%
TCAGAACCTCAAGAGAAGCA+AGG - chr7.2:4097816-4097835 None:intergenic 45.0%
TCTCACTTCCTGGCTACAAT+AGG - chr7.2:4096597-4096616 None:intergenic 45.0%
TGTAACTAACCCCATCTGGT+GGG - chr7.2:4096497-4096516 None:intergenic 45.0%
TTGTAACTAACCCCATCTGG+TGG - chr7.2:4096498-4096517 None:intergenic 45.0%
! AACTGAAAAGGCTTTGGTGG+TGG - chr7.2:4096472-4096491 None:intergenic 45.0%
! AGAGTACCTTGCTTCTCTTG+AGG + chr7.2:4097807-4097826 MS.gene23118:CDS 45.0%
! TTCAGTTTTCCCACCAGATG+GGG + chr7.2:4096485-4096504 MS.gene23118:intron 45.0%
!! ATGGGAGTTGGTGCTCAATT+TGG + chr7.2:4097314-4097333 MS.gene23118:CDS 45.0%
!! GGTCGGTGCTCATTATTTTG+AGG + chr7.2:4097476-4097495 MS.gene23118:intron 45.0%
!!! TATTTAATTTTTCAATTAAT+TGG + chr7.2:4095614-4095633 MS.gene23118:intron 5.0%
AACCAATACCTGCATGCAGC+AGG - chr7.2:4095721-4095740 None:intergenic 50.0%
AACCTGCTGCATGCAGGTAT+TGG + chr7.2:4095716-4095735 MS.gene23118:intron 50.0%
ACGTGAACCCTATTGTAGCC+AGG + chr7.2:4096586-4096605 MS.gene23118:intron 50.0%
ATGGCAAGCGCACAATCATC+AGG - chr7.2:4097760-4097779 None:intergenic 50.0%
CTTTCAATGCCTGACCGAAG+CGG + chr7.2:4095525-4095544 MS.gene23118:CDS 50.0%
GGAAGTTCTTCATCCAGTGC+AGG - chr7.2:4096152-4096171 None:intergenic 50.0%
TGGCAAGCGCACAATCATCA+GGG - chr7.2:4097759-4097778 None:intergenic 50.0%
! TCACCCGCACCTTATTTCCA+TGG + chr7.2:4098085-4098104 MS.gene23118:CDS 50.0%
ATGCAGCAGGTTCCCAAGTC+AGG - chr7.2:4095708-4095727 None:intergenic 55.0%
GGAAATAAGGTGCGGGTGAC+TGG - chr7.2:4098084-4098103 None:intergenic 55.0%
GGCAAGCGCACAATCATCAG+GGG - chr7.2:4097758-4097777 None:intergenic 55.0%
GTTACATCTCCGCTTCGGTC+AGG - chr7.2:4095537-4095556 None:intergenic 55.0%
TACAGAGGTGAGACCTGCAC+TGG + chr7.2:4096136-4096155 MS.gene23118:CDS 55.0%
TGCAGCAGGTTCCCAAGTCA+GGG - chr7.2:4095707-4095726 None:intergenic 55.0%
CTTGGGAACCTGCTGCATGC+AGG + chr7.2:4095710-4095729 MS.gene23118:intron 60.0%
GCAGCAGGTTCCCAAGTCAG+GGG - chr7.2:4095706-4095725 None:intergenic 60.0%
GGGAAGGATACTGAGGGCCC+AGG + chr7.2:4097107-4097126 MS.gene23118:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4095243 4098170 4095243 ID=MS.gene23118
chr7.2 mRNA 4095243 4098170 4095243 ID=MS.gene23118.t1;Parent=MS.gene23118
chr7.2 exon 4095243 4095351 4095243 ID=MS.gene23118.t1.exon1;Parent=MS.gene23118.t1
chr7.2 CDS 4095243 4095351 4095243 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4095436 4095551 4095436 ID=MS.gene23118.t1.exon2;Parent=MS.gene23118.t1
chr7.2 CDS 4095436 4095551 4095436 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4095732 4095821 4095732 ID=MS.gene23118.t1.exon3;Parent=MS.gene23118.t1
chr7.2 CDS 4095732 4095821 4095732 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4096131 4096195 4096131 ID=MS.gene23118.t1.exon4;Parent=MS.gene23118.t1
chr7.2 CDS 4096131 4096195 4096131 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4097028 4097189 4097028 ID=MS.gene23118.t1.exon5;Parent=MS.gene23118.t1
chr7.2 CDS 4097028 4097189 4097028 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4097312 4097390 4097312 ID=MS.gene23118.t1.exon6;Parent=MS.gene23118.t1
chr7.2 CDS 4097312 4097390 4097312 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4097477 4097554 4097477 ID=MS.gene23118.t1.exon7;Parent=MS.gene23118.t1
chr7.2 CDS 4097477 4097554 4097477 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4097754 4097828 4097754 ID=MS.gene23118.t1.exon8;Parent=MS.gene23118.t1
chr7.2 CDS 4097754 4097828 4097754 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4097941 4097976 4097941 ID=MS.gene23118.t1.exon9;Parent=MS.gene23118.t1
chr7.2 CDS 4097941 4097976 4097941 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
chr7.2 exon 4098063 4098170 4098063 ID=MS.gene23118.t1.exon10;Parent=MS.gene23118.t1
chr7.2 CDS 4098063 4098170 4098063 ID=cds.MS.gene23118.t1;Parent=MS.gene23118.t1
Gene Sequence

>MS.gene23118

ATGGCAGAAGAAGAAGAAGAATCAGAGCTTAGCGAGAAGCAGAAAGTTGAAATCGCGAAGTGGTTTCTTCTCAATTCTCCTCCTGGTGAAATTCAATACGTTGCAAAAGGTTCTTTTACATTTTTCTTCCTCAGCATTTCATTTTCATTCCACTTTTACATTTCAATTTGTCTAATCGTTTCTTCTTCTTCAGATGTGAAATCCATTCTCAACGATGATGGTTCGTTTAACGAAGCTGCATCCGAAGCATTTCCAATTTACAACAAATCACACTTCATTGTTCTTTCAATGCCTGACCGAAGCGGAGATGTAACTAACTTTTCATATTTTTTAATTGTTTTCTAATTCTTAGGGTTTCATATTTTTTTTACTATTTAATTTTTCAATTAATTGGATCGGTATCATGCTATATGAATGTATGATTGATAAATCAATGTGTATTTTCTTATGTAACACAAATCCCCTGACTTGGGAACCTGCTGCATGCAGGTATTGGTTACTTCATATGGCGAGCTTGAGGACAATGCATATCTTGATCCTAGAACTGCTCAAGTAGCAATAGTTGACCATGTTAAACAAGTAAGTGTGTGTTTGATTGAATTTATTTTACTTAAAAATGAGCTTTAGGTAAGATCATTTATGTTTGGATTTGTGTGTGGAGAGTATTATAAGGACCAATTTTCTGCTTATTGAAATTGCATGTTGGAACTTGGAAAATGTGTTTTCTGTGAAAACATTGAAATTAGAAGGAAATATTTAGTTGGAGGTTAGGGTATAAAGCAAAACAGGAAAATTTGGTATTGCAGCCAAATATGACTTGTGTTGCTGTATTTGTGCTAAGCTGTATCGTTGGCATGTTTTCTTATGACAATTTGATATATGTTTCAGGTCTGTACAGAGGTGAGACCTGCACTGGATGAAGAACTTCCATCTGCATACATTGAAGAATTTCGGTAATCCTCTCCAATTTCCATGATTGAGATTTTTTATGTCTTACCATTTGATATTCCGTTAATCTTTTACTGAAGTGACCCGCACAATGATTTTTGATGTTGAGGGGTAGAACATGCTGCTTCATTTTAGATTTTAATGAACTTATTTGCTTTTCAAATAAACTTTTTATTCTCTAGTGCTAGTACTTTATTATTCCTCAATCATCTGCGTGAACTTAGACTTTTTAAATTGTTCAAAATAGATTGACCAAATAGATCTCTTCTTTAATACAGCCACCACCAAAGCCTTTTCAGTTTTCCCACCAGATGGGGTTAGTTACAATGTCCTATCATGAATCATGCCTTTTGACAAGTATAGATTTGTTCTTCTATGCAACTATTCTATTGAGAACGTGAACCCTATTGTAGCCAGGAAGTGAGACTCATATATGTGATAGATATTAATCTCTTTGTTCGTTTTAAGCGTCTTTTAAGGTTATGACACACAAATTAAGAATAACTTGTGTTTAGTTTTTAATTTATCCTTTCTCTCAAATATTTTACTTCTCCACAATTCTTTGTTGTATTAATTCTTTTGGTTAAAATAAGGATATACTGTAATTGACAAATGAGTAAAACAGCAATTAATCTTGGACTTTTAAAATGACTGATAAATTGGAACATAAGCTTTTCTTTGAGCAACACTTTAAAAGAAAAGGAGGGAGCATTTGGCTGTATATATCTTGTCATTAAAAAACTATATTGACTGCTTGCATAAAGTAGCTTGAGTATCGCATGCCTGTGTCTTTTGCATGCATCATCGCTTGCATAACACAGGACTTGTTTATTGCAGATTCAGTCTGGATGCTGAAATACTTAAATATGTTGAAGAAGTTTATCCAAAAGGTGTCTGTTCTGTCTACTGTGTAAATGGGAAGGATACTGAGGGCCCAGGTTCTGATTTTGAGCTTGCTGTTGTGATTTCTGCTGCTAGGCATAGCCCACAAAATTTCTGGTGTGTGAATTTAGTTGAAAAAAATTCGAACTGTTAGATGACTACTTTACTAGTTATAGTTACATAGTAAAAAAATGTATTAATAAAGTTAGTACTCCTTTTTCTTTGGCTTTTGTTTATAGCAATGGGAGTTGGTGCTCAATTTGGAATATTGATTTCAAAGACGACCAACAAACAGTGGACGTAAAAGGGAAATTGCAGGTAATTTTATGTAGATATTTGATGCATTGATTTGAATGATACTTTACAGCCCTACTTTAACATAATCATTTTTATCCTATTTTTAGGTCGGTGCTCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATGCAACTCTTTTTCAGGTTACCATAAATCAGCATTCTTTGACTTATCAGTATATTATGTGTGAATGTATCAGCAAGTTACCTGTACATGTCCATCCACTTATTTTTGACAATCTAATGTATATGCATCCTTGTCTCTTTTTGTATATATATTCGAAAATGGTAAGATATAGGTATAGATTATTCATGTTTCATCTTTTGATTTATTTATGTTCAGGCCCCTGATGATTGTGCGCTTGCCATATCAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGGTTCTGAATTCGATTTCTTGTAGCTAGGATCATTCTCTTTTTCTTCTTTTTTTTCTTTCTTCTTTTCTTCTTCTTCTTCTTGTTAATGTTGCTAATGACCATAACTTGACAGGCTTCATATCTAAACCTTCCTGATTCTACTTTCAAGGTACCCTCTATTATATAATCCTATATTTATGTTAAGCCTATGATAGTCGTTGATTTTTGAAGCCTTCTGATTATAATTTATTGCAGGATCTTCGGAGGAAGCTTCCAGTCACCCGCACCTTATTTCCATGGCATAACACTTTGCAATTTAGCTTGTCAAGAGACATCTCAAAAGAACTTGGCATTGGAAAGTAA
Protein sequence

>MS.gene23118.t1

MAEEEEESELSEKQKVEIAKWFLLNSPPGEIQYVAKDVKSILNDDGSFNEAASEAFPIYNKSHFIVLSMPDRSGDVLVTSYGELEDNAYLDPRTAQVAIVDHVKQVCTEVRPALDEELPSAYIEEFRFSLDAEILKYVEEVYPKGVCSVYCVNGKDTEGPGSDFELAVVISAARHSPQNFCNGSWCSIWNIDFKDDQQTVDVKGKLQVGAHYFEEGNVQLDAKHECKDATLFQAPDDCALAISSIIRHHETEYLASLEASYLNLPDSTFKDLRRKLPVTRTLFPWHNTLQFSLSRDISKELGIGK