AlfalfaGEDB | MS.gene23140

M. sativa cultivar XinJiangDaYe / MS.gene23140

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23140.t1	RHN76102.1	87.4	95	12	0	26	120	264	358	1.40E-36	163.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23140.t1	Q9XE58	41.9	117	61	1	32	141	360	476	1.9e-18	94.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23140.t1	G7IRV1	87.4	95	12	0	26	120	336	430	1.0e-36	163.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23140.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050766	MS.gene23140	0.981148	6.86E-152	-1.69E-46
MS.gene050769	MS.gene23140	0.907531	4.58E-81	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23140.t1	MTR_2g097410	87.368	95	12	0	26	120	336	430	5.83e-49	171
MS.gene23140.t1	MTR_4g064150	62.667	75	28	0	40	114	340	414	1.42e-27	110
MS.gene23140.t1	MTR_3g087300	92.727	55	4	0	26	80	154	208	1.52e-27	105
MS.gene23140.t1	MTR_4g064160	56.180	89	39	0	30	118	285	373	2.44e-25	104
MS.gene23140.t1	MTR_4g064120	49.505	101	48	2	21	119	215	314	2.15e-24	101
MS.gene23140.t1	MTR_7g062120	59.211	76	31	0	43	118	354	429	1.02e-23	99.8
MS.gene23140.t1	MTR_4g064180	60.000	70	28	0	42	111	235	304	2.04e-22	95.9
MS.gene23140.t1	MTR_2g097390	49.425	87	44	0	32	118	246	332	1.23e-20	90.9
MS.gene23140.t1	MTR_2g097350	52.778	72	34	0	47	118	260	331	1.05e-19	88.2
MS.gene23140.t1	MTR_2g097310	54.930	71	29	1	51	118	259	329	1.26e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23140.t1	AT1G07530	54.651	86	32	1	40	118	368	453	9.95e-23	97.1
MS.gene23140.t1	AT1G07520	49.474	95	36	3	24	113	119	206	2.34e-19	87.0
MS.gene23140.t1	AT1G07520	49.474	95	36	3	24	113	119	206	2.34e-19	87.0
MS.gene23140.t1	AT1G07520	49.474	95	36	3	24	113	283	370	2.86e-19	87.0
MS.gene23140.t1	AT1G07520	49.474	95	36	3	24	113	284	371	2.97e-19	87.0
MS.gene23140.t1	AT2G29060	51.282	78	38	0	41	118	264	341	5.20e-19	86.3
MS.gene23140.t1	AT2G29060	51.282	78	38	0	41	118	301	378	5.56e-19	86.3
MS.gene23140.t1	AT2G37650	55.714	70	31	0	49	118	335	404	3.63e-18	83.6
MS.gene23140.t1	AT2G37650	55.714	70	31	0	49	118	323	392	3.90e-18	83.6
MS.gene23140.t1	AT2G29065	57.627	59	25	0	55	113	246	304	1.17e-13	70.5

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Find 0 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCACAAGTAACAACAAT+AGG	-	51771:6123-6142	MS.gene23140:intron	30.0%
ACATAGTAAATAAGTCAGCA+AGG	+	51771:5938-5957	None:intergenic	30.0%
ACTTCTATCAAAATTAGCAG+TGG	-	51771:5490-5509	MS.gene23140:intron	30.0%
ATGAATTGTTGAAGCAGATT+AGG	-	51771:5104-5123	MS.gene23140:intron	30.0%
CAAGTAACAACAATAGGTTA+TGG	-	51771:6129-6148	MS.gene23140:intron	30.0%
GAGCCTGCTTATAAAAAAAA+TGG	-	51771:5783-5802	MS.gene23140:CDS	30.0%
GCTGATTAGAATACCAAATT+TGG	-	51771:5833-5852	MS.gene23140:CDS	30.0%
GGCTCATTGTTACAATATAT+TGG	-	51771:5701-5720	MS.gene23140:CDS	30.0%
TAGTAGTTAAAGAGAAGCTT+TGG	-	51771:4455-4474	MS.gene23140:CDS	30.0%
TCTGATGTTTAAGAATTTGC+TGG	-	51771:4750-4769	MS.gene23140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
51771	gene	4370	6515	4370	ID=MS.gene23140
51771	mRNA	4370	6515	4370	ID=MS.gene23140.t1;Parent=MS.gene23140
51771	exon	6441	6515	6441	ID=MS.gene23140.t1.exon1;Parent=MS.gene23140.t1
51771	CDS	6441	6515	6441	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1
51771	exon	5668	5938	5668	ID=MS.gene23140.t1.exon2;Parent=MS.gene23140.t1
51771	CDS	5668	5938	5668	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1
51771	exon	5521	5581	5521	ID=MS.gene23140.t1.exon3;Parent=MS.gene23140.t1
51771	CDS	5521	5581	5521	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1
51771	exon	5321	5441	5321	ID=MS.gene23140.t1.exon4;Parent=MS.gene23140.t1
51771	CDS	5321	5441	5321	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1
51771	exon	4834	4899	4834	ID=MS.gene23140.t1.exon5;Parent=MS.gene23140.t1
51771	CDS	4834	4899	4834	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1
51771	exon	4370	4510	4370	ID=MS.gene23140.t1.exon6;Parent=MS.gene23140.t1
51771	CDS	4370	4510	4370	ID=cds.MS.gene23140.t1;Parent=MS.gene23140.t1

Gene Sequence

>MS.gene23140

ATGCTAATAAAGTTATTGCATTTGGCTGTATTGGTGACATATATCAGTGATGAATTTGTTGCTCTATATCACTGTGTAAGAAGTTTAGTAGTTAAAGAGAAGCTTTGGAGGAAGTTTAGCAGAAAGTAATTTTGTTAGTGCCAAAACTCAAAGAACATTTTTAAAGATACTTAGATGCATGATTTTACCTGCTAAAAAGTTTTAACATTATATTTGAAAGTGACAGATGCAGTTGTGCCTAAGTTGTTAAAAACTGATGTAATGATAGTTTGTTGGTAGAGTCATGATTATTTTGGTTAAAATCAATCAAGTTTGTAAACTATAATGGTGCCATTGGATCACTTTGGTTGCATAGGATTGATTGATTTGAATTGTTAGAATCTGATGTTTAAGAATTTGCTGGTATAGTCTTGGTTAACTTTTTTGGATACATTAAAGTAATTGTTACCTGAAAATTTGCTAAAAATGTTAAGTTCTTGTGATCTGATTGCTGAGTTTGAGAGCATGTACAGAAATTTGAATTCATTGGCCATGCAACTTACAAAAAGAAAATGTGCCGTTGTGTGCTGAACAAAAGGATGGATCAGTGGTGGAGAGTAGAACACAGGTTGGTGAACTTGATGGAGGGAAGGCGCGTTCGAAGAAACAAGGGAGGAAGAGGGATGTTGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGATAATGAATTGTTGAAGCAGATTAGGAAGCATTCTTGTCCTTCAGGTGATGCATCAGAGAGAATGGCTCATTACTTTGCAAATGCGATTGAAGCGCACATGGTTGGTGCTGGTAACGGTACACAAATATTATATATGAGCCAAAAGATGTTTAGTGCTGATTTTGATTGTGTAGGTATGAATTTGTGATTTTGATTGCAAAAGGCAGTTACTTTCTTGCCTCAGGGGGACGAGATTGTATGATCCATCTCTATGATGCTGAAAGGTGTAGTTATCAGTCTTATAAGCTAACTTTATTGGCTGCTTGTGCATTTTGATGACTGTATGAATGTACGACTGTGCAGGAATTTTGATAATATTGGCAGCGTTGGTAATCATTCGGCTGCAGTGACTTCTATCAAAATTAGCAGTGGCAGTTGCAAGATCCTCAGTTGTAGTGCTGAAAGGTATGTTAGCATGGGTTCGGTATACAAAAAAAAAATGAATGGACTGTGTATGTTTTGCTGATCAATTGAATAACAGGAATAGAAGTTTTACATAGAGGTTCTGACTTTTTTGTGTAAAAAACTACAAATGAATTTGAACTTTAACAACCTCTTATGGCTCATTGTTACAATATATTGGTTTAGTTTTTTCATATGTACATGTGTTACAATGATTGTGCATTCAACTTAAGATATTTGGAGCCTGCTTATAAAAAAAATGGTTGTATAGAATATTTTGTGTTGGTTTGGCTGATTAGAATACCAAATTTGGATGCTTTATTAACAGGAAATTCATGATATGCTAAACTTTGAGAAAGTAGCTAGAATGAAAGTTGAGGACATAACTTATTCCTTGCTGACTTATTTACTATGTTTTCCTTAATTTTGGTCTAAACTAACAGGAACCAGCTGCAAGAGGAAAAACATCAAGCCAATCAAACTACAGTGGTGGTGCATTTTGCACAACAGTGCGTTTATTAATCAAACACCAGTTATAATTATTTATGTTCATGAAACTGATTGCTTTTTGAAAATTTAGAAGTCACAAGTAACAACAATAGGTTATGGTCAACAGTGGAGGTAGGGCTAAAGATTAGGAGTACAATATTTATGCATGTCAATATGAATGGTACACAAAAGTATTTGAGAAAGTTCTAAATTTATATTCAGAATCATAAAATCATATGATATTTTAATTTTAATGAATGACGATGCATAGATTTTAAAATCTCCCGTGTCTTTGTGCAATGTACCCTTTTGATATTGATTAAGGATGTTAATTGTTTTTCAGACTCATGGAGTGCTGAATGCAGTGAGCTGGGGGACCTTGATGCCTTTGGGAGCTGTGATTGCAAGGTACTTGAAGGTGTTCAAATATGCAGACCTTGCTTGGTTTTACCTTATGTTACTTGCCAATCAGCTTCCTATATAG

Protein sequence

>MS.gene23140.t1

MLIKLLHLAVLVTYISDEFVALYHCDGSVVESRTQVGELDGGKARSKKQGRKRDVVDLRTLLVLCAQAVSANDNRTDNELLKQIRKHSCPSGDASERMAHYFANAIEAHMVGAGNGSYFLASGGRDCMIHLYDAERNFDNIGSVGNHSAAVTSIKISSGSCKILSCSAERYVSMGSEPAARGKTSSQSNYSGGAFCTTTHGVLNAVSWGTLMPLGAVIARYLKVFKYADLAWFYLMLLANQLPI