Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050769.t1 | RHN76102.1 | 87.4 | 95 | 12 | 0 | 26 | 120 | 264 | 358 | 1.30E-36 | 163.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050769.t1 | Q9XE58 | 41.9 | 117 | 61 | 1 | 32 | 141 | 360 | 476 | 1.7e-18 | 94.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050769.t1 | G7IRV1 | 87.4 | 95 | 12 | 0 | 26 | 120 | 336 | 430 | 9.1e-37 | 163.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene050769.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050766 | MS.gene050769 | 0.915592 | 4.90E-85 | -1.69E-46 |
MS.gene050769 | MS.gene23136 | 0.91656 | 1.54E-85 | -1.69E-46 |
MS.gene050769 | MS.gene23140 | 0.907531 | 4.58E-81 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050769.t1 | MTR_2g097410 | 87.368 | 95 | 12 | 0 | 26 | 120 | 336 | 430 | 2.23e-50 | 174 |
MS.gene050769.t1 | MTR_4g064150 | 62.667 | 75 | 28 | 0 | 40 | 114 | 340 | 414 | 6.92e-28 | 110 |
MS.gene050769.t1 | MTR_3g087300 | 92.727 | 55 | 4 | 0 | 26 | 80 | 154 | 208 | 7.66e-28 | 105 |
MS.gene050769.t1 | MTR_4g064160 | 56.180 | 89 | 39 | 0 | 30 | 118 | 285 | 373 | 4.50e-27 | 108 |
MS.gene050769.t1 | MTR_4g064120 | 49.505 | 101 | 48 | 2 | 21 | 119 | 215 | 314 | 6.69e-25 | 102 |
MS.gene050769.t1 | MTR_7g062120 | 59.211 | 76 | 31 | 0 | 43 | 118 | 354 | 429 | 1.08e-24 | 101 |
MS.gene050769.t1 | MTR_4g064180 | 60.000 | 70 | 28 | 0 | 42 | 111 | 235 | 304 | 6.37e-23 | 96.7 |
MS.gene050769.t1 | MTR_2g097390 | 49.425 | 87 | 44 | 0 | 32 | 118 | 246 | 332 | 5.68e-21 | 90.9 |
MS.gene050769.t1 | MTR_2g097350 | 52.778 | 72 | 34 | 0 | 47 | 118 | 260 | 331 | 5.52e-20 | 88.2 |
MS.gene050769.t1 | MTR_2g097310 | 54.930 | 71 | 29 | 1 | 51 | 118 | 259 | 329 | 5.20e-19 | 85.5 |
MS.gene050769.t1 | MTR_2g097463 | 56.522 | 69 | 28 | 1 | 41 | 107 | 268 | 336 | 8.65e-17 | 79.0 |
MS.gene050769.t1 | MTR_4g064200 | 56.923 | 65 | 27 | 1 | 56 | 120 | 279 | 342 | 1.32e-15 | 75.5 |
MS.gene050769.t1 | MTR_2g097467 | 41.322 | 121 | 58 | 6 | 15 | 124 | 236 | 354 | 2.03e-15 | 74.7 |
MS.gene050769.t1 | MTR_2g097473 | 41.964 | 112 | 55 | 4 | 15 | 118 | 236 | 345 | 1.68e-14 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050769.t1 | AT1G07530 | 54.651 | 86 | 32 | 1 | 40 | 118 | 368 | 453 | 4.16e-23 | 97.4 |
MS.gene050769.t1 | AT1G07520 | 50.549 | 91 | 39 | 2 | 25 | 113 | 284 | 370 | 5.98e-20 | 88.2 |
MS.gene050769.t1 | AT1G07520 | 50.549 | 91 | 39 | 2 | 25 | 113 | 285 | 371 | 5.98e-20 | 88.2 |
MS.gene050769.t1 | AT2G29060 | 51.282 | 78 | 38 | 0 | 41 | 118 | 301 | 378 | 9.27e-20 | 87.4 |
MS.gene050769.t1 | AT1G07520 | 49.474 | 95 | 36 | 3 | 24 | 113 | 119 | 206 | 1.42e-19 | 87.0 |
MS.gene050769.t1 | AT1G07520 | 49.474 | 95 | 36 | 3 | 24 | 113 | 119 | 206 | 1.42e-19 | 87.0 |
MS.gene050769.t1 | AT2G29060 | 51.282 | 78 | 38 | 0 | 41 | 118 | 264 | 341 | 3.19e-19 | 85.9 |
MS.gene050769.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 49 | 118 | 335 | 404 | 1.91e-18 | 84.0 |
MS.gene050769.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 49 | 118 | 323 | 392 | 2.25e-18 | 83.6 |
MS.gene050769.t1 | AT2G29065 | 57.627 | 59 | 25 | 0 | 55 | 113 | 246 | 304 | 6.80e-14 | 70.5 |
MS.gene050769.t1 | AT3G46600 | 38.144 | 97 | 59 | 1 | 42 | 138 | 161 | 256 | 1.30e-13 | 69.7 |
MS.gene050769.t1 | AT3G46600 | 38.144 | 97 | 59 | 1 | 42 | 138 | 193 | 288 | 1.60e-13 | 69.3 |
MS.gene050769.t1 | AT5G59450 | 45.333 | 75 | 38 | 1 | 41 | 112 | 204 | 278 | 3.52e-13 | 68.2 |
MS.gene050769.t1 | AT3G46600 | 39.506 | 81 | 48 | 1 | 58 | 138 | 1 | 80 | 4.63e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTATACAAAAAAAAAATGAA+TGG | - | 51772:1389-1408 | MS.gene050769:intron | 15.0% |
!! | TGAACATAAATAATTATAAC+TGG | + | 51772:1899-1918 | None:intergenic | 15.0% |
!! | ATCAAGTTTGTAAACTATAA+TGG | - | 51772:499-518 | MS.gene050769:intron | 20.0% |
!! | ATCCTTAATCAATATCAAAA+GGG | + | 51772:2163-2182 | None:intergenic | 20.0% |
!!! | AACATTTTTAGCAAATTTTC+AGG | + | 51772:644-663 | None:intergenic | 20.0% |
!!! | TAATGTTAAAACTTTTTAGC+AGG | + | 51772:384-403 | None:intergenic | 20.0% |
!!! | TACTATGTTTTCCTTAATTT+TGG | - | 51772:1774-1793 | MS.gene050769:intron | 20.0% |
!!! | TTAAAATGTTCTTTGAGTTT+TGG | + | 51772:338-357 | None:intergenic | 20.0% |
!!! | TTGTATAGAATATTTTGTGT+TGG | - | 51772:1630-1649 | MS.gene050769:CDS | 20.0% |
! | CATCCTTAATCAATATCAAA+AGG | + | 51772:2164-2183 | None:intergenic | 25.0% |
! | GCTAATAAAGTTATTGCATT+TGG | - | 51772:197-216 | MS.gene050769:CDS | 25.0% |
! | GTACAGAAATTTGAATTCAT+TGG | - | 51772:700-719 | MS.gene050769:intron | 25.0% |
! | GTCTTATAAGCTAACTTTAT+TGG | - | 51772:1201-1220 | MS.gene050769:intron | 25.0% |
! | TGCATTCAACTTAAGATATT+TGG | - | 51772:1585-1604 | MS.gene050769:CDS | 25.0% |
! | TTTATGCATGTCAATATGAA+TGG | - | 51772:2015-2034 | MS.gene050769:intron | 25.0% |
!! | AATTTGGATGCTTTATTAAC+AGG | - | 51772:1673-1692 | MS.gene050769:intron | 25.0% |
!! | ACATCAGTTTTTAACAACTT+AGG | + | 51772:434-453 | None:intergenic | 25.0% |
!! | GTTAATAAAGCATCCAAATT+TGG | + | 51772:1673-1692 | None:intergenic | 25.0% |
!! | GTTAGTTTAGACCAAAATTA+AGG | + | 51772:1788-1807 | None:intergenic | 25.0% |
!! | TTTTCTTTTTGTAAGTTGCA+TGG | + | 51772:726-745 | None:intergenic | 25.0% |
!!! | ATAGTCTTGGTTAACTTTTT+TGG | - | 51772:598-617 | MS.gene050769:CDS | 25.0% |
!!! | CAACCATTTTTTTTATAAGC+AGG | + | 51772:1613-1632 | None:intergenic | 25.0% |
!!! | TAATTTTGGTCTAAACTAAC+AGG | - | 51772:1788-1807 | MS.gene050769:intron | 25.0% |
!!! | TACCCTTTTGATATTGATTA+AGG | - | 51772:2158-2177 | MS.gene050769:intron | 25.0% |
!!! | TAGAATATTTTGTGTTGGTT+TGG | - | 51772:1635-1654 | MS.gene050769:CDS | 25.0% |
!!! | TGCAGGAATTTTGATAATAT+TGG | - | 51772:1263-1282 | MS.gene050769:intron | 25.0% |
!!! | TTAATTGTTTTTCAGACTCA+TGG | - | 51772:2184-2203 | MS.gene050769:intron | 25.0% |
!!! | TTTGTGATTTTGATTGCAAA+AGG | - | 51772:1106-1125 | MS.gene050769:CDS | 25.0% |
AAGTCACAAGTAACAACAAT+AGG | - | 51772:1947-1966 | MS.gene050769:intron | 30.0% | |
ACATAGTAAATAAGTCAGCA+AGG | + | 51772:1762-1781 | None:intergenic | 30.0% | |
ACTTCTATCAAAATTAGCAG+TGG | - | 51772:1314-1333 | MS.gene050769:intron | 30.0% | |
ATGAATTGTTGAAGCAGATT+AGG | - | 51772:928-947 | MS.gene050769:intron | 30.0% | |
CAAGTAACAACAATAGGTTA+TGG | - | 51772:1953-1972 | MS.gene050769:intron | 30.0% | |
GAGCCTGCTTATAAAAAAAA+TGG | - | 51772:1607-1626 | MS.gene050769:CDS | 30.0% | |
GCTGATTAGAATACCAAATT+TGG | - | 51772:1657-1676 | MS.gene050769:CDS | 30.0% | |
GGCTCATTGTTACAATATAT+TGG | - | 51772:1525-1544 | MS.gene050769:CDS | 30.0% | |
TAGTAGTTAAAGAGAAGCTT+TGG | - | 51772:280-299 | MS.gene050769:intron | 30.0% | |
TCTGATGTTTAAGAATTTGC+TGG | - | 51772:574-593 | MS.gene050769:intron | 30.0% | |
TGAACTTTAACAACCTCTTA+TGG | - | 51772:1504-1523 | MS.gene050769:CDS | 30.0% | |
TTGCTGATCAATTGAATAAC+AGG | - | 51772:1424-1443 | MS.gene050769:CDS | 30.0% | |
! | AATCAGCACTAAACATCTTT+TGG | + | 51772:1067-1086 | None:intergenic | 30.0% |
! | CTGATGTAATGATAGTTTGT+TGG | - | 51772:447-466 | MS.gene050769:intron | 30.0% |
! | GGAATAGAAGTTTTACATAG+AGG | - | 51772:1445-1464 | MS.gene050769:CDS | 30.0% |
! | TGGTAGAGTCATGATTATTT+TGG | - | 51772:467-486 | MS.gene050769:intron | 30.0% |
AGTAGCTAGAATGAAAGTTG+AGG | - | 51772:1724-1743 | MS.gene050769:intron | 35.0% | |
GTTATTGCATTTGGCTGTAT+TGG | - | 51772:206-225 | MS.gene050769:CDS | 35.0% | |
TTGTAACAATGAGCCATAAG+AGG | + | 51772:1520-1539 | None:intergenic | 35.0% | |
! | TAGTTAAAGAGAAGCTTTGG+AGG | - | 51772:283-302 | MS.gene050769:intron | 35.0% |
! | TTTGATAATATTGGCAGCGT+TGG | - | 51772:1272-1291 | MS.gene050769:CDS | 35.0% |
!! | AGAATTTGCTGGTATAGTCT+TGG | - | 51772:585-604 | MS.gene050769:CDS | 35.0% |
!! | GTAAACTATAATGGTGCCAT+TGG | - | 51772:508-527 | MS.gene050769:intron | 35.0% |
!!! | AGTGCTGATTTTGATTGTGT+AGG | - | 51772:1077-1096 | MS.gene050769:CDS | 35.0% |
AAGGTATGTTAGCATGGGTT+CGG | - | 51772:1367-1386 | MS.gene050769:intron | 40.0% | |
ACCTTTCAGCATCATAGAGA+TGG | + | 51772:1171-1190 | None:intergenic | 40.0% | |
ATGCAACCAAAGTGATCCAA+TGG | + | 51772:527-546 | None:intergenic | 40.0% | |
CAATAGGTTATGGTCAACAG+TGG | - | 51772:1963-1982 | MS.gene050769:intron | 40.0% | |
CTGTGTCTGCTAATGACAAT+AGG | - | 51772:898-917 | MS.gene050769:intron | 40.0% | |
TCAAGCCAATCAAACTACAG+TGG | - | 51772:1834-1853 | MS.gene050769:intron | 40.0% | |
TCCATCTCTATGATGCTGAA+AGG | - | 51772:1167-1186 | MS.gene050769:CDS | 40.0% | |
TGAACAAAAGGATGGATCAG+TGG | - | 51772:761-780 | MS.gene050769:intron | 40.0% | |
TTGGATCACTTTGGTTGCAT+AGG | - | 51772:527-546 | MS.gene050769:intron | 40.0% | |
TTGTGCACACAGAACCAAAA+GGG | + | 51772:877-896 | None:intergenic | 40.0% | |
TTGTGTGCTGAACAAAAGGA+TGG | - | 51772:753-772 | MS.gene050769:intron | 40.0% | |
! | GCTGAAAGGTATGTTAGCAT+GGG | - | 51772:1362-1381 | MS.gene050769:intron | 40.0% |
! | TCCTTTTGTTCAGCACACAA+CGG | + | 51772:753-772 | None:intergenic | 40.0% |
! | TGCTGAAAGGTATGTTAGCA+TGG | - | 51772:1361-1380 | MS.gene050769:intron | 40.0% |
AAATGCGATTGAAGCGCACA+TGG | - | 51772:1004-1023 | MS.gene050769:intron | 45.0% | |
ACAAAAGGATGGATCAGTGG+TGG | - | 51772:764-783 | MS.gene050769:intron | 45.0% | |
ACCTTTCAGCACTACAACTG+AGG | + | 51772:1352-1371 | None:intergenic | 45.0% | |
AGAGGGATGTTGTGGATTTG+AGG | - | 51772:850-869 | MS.gene050769:intron | 45.0% | |
AGCCAATCAAACTACAGTGG+TGG | - | 51772:1837-1856 | MS.gene050769:intron | 45.0% | |
AGGTGATGCATCAGAGAGAA+TGG | - | 51772:968-987 | MS.gene050769:intron | 45.0% | |
CACCACCACTGTAGTTTGAT+TGG | + | 51772:1842-1861 | None:intergenic | 45.0% | |
CTTGTGCACACAGAACCAAA+AGG | + | 51772:878-897 | None:intergenic | 45.0% | |
GAAGAAACAAGGGAGGAAGA+GGG | - | 51772:833-852 | MS.gene050769:intron | 45.0% | |
GGGTACATTGCACAAAGACA+CGG | + | 51772:2143-2162 | None:intergenic | 45.0% | |
GGTACATTGCACAAAGACAC+GGG | + | 51772:2142-2161 | None:intergenic | 45.0% | |
GTATGAATGTACGACTGTGC+AGG | - | 51772:1246-1265 | MS.gene050769:intron | 45.0% | |
TAGGTTATGGTCAACAGTGG+AGG | - | 51772:1966-1985 | MS.gene050769:intron | 45.0% | |
TATGGTCAACAGTGGAGGTA+GGG | - | 51772:1971-1990 | MS.gene050769:intron | 45.0% | |
TGGAGGTAGGGCTAAAGATT+AGG | - | 51772:1983-2002 | MS.gene050769:intron | 45.0% | |
TTATGGTCAACAGTGGAGGT+AGG | - | 51772:1970-1989 | MS.gene050769:intron | 45.0% | |
! | AGTTACTTTCTTGCCTCAGG+GGG | - | 51772:1130-1149 | MS.gene050769:CDS | 45.0% |
! | CAGTTACTTTCTTGCCTCAG+GGG | - | 51772:1129-1148 | MS.gene050769:CDS | 45.0% |
! | GATGTTTTTCCTCTTGCAGC+TGG | + | 51772:1816-1835 | None:intergenic | 45.0% |
! | GCAGTTACTTTCTTGCCTCA+GGG | - | 51772:1128-1147 | MS.gene050769:CDS | 45.0% |
! | TCCTCAGTTGTAGTGCTGAA+AGG | - | 51772:1348-1367 | MS.gene050769:intron | 45.0% |
! | TGTGGATTTGAGGACCCTTT+TGG | - | 51772:860-879 | MS.gene050769:intron | 45.0% |
!! | ACACAGGTTGGTGAACTTGA+TGG | - | 51772:795-814 | MS.gene050769:intron | 45.0% |
!! | AGGAAGCATTCTTGTCCTTC+AGG | - | 51772:948-967 | MS.gene050769:intron | 45.0% |
!! | AGGTTGGTGAACTTGATGGA+GGG | - | 51772:799-818 | MS.gene050769:intron | 45.0% |
!! | ATGGTGCCATTGGATCACTT+TGG | - | 51772:518-537 | MS.gene050769:intron | 45.0% |
!! | TGGCAGCGTTGGTAATCATT+CGG | - | 51772:1283-1302 | MS.gene050769:CDS | 45.0% |
AAGGCGCGTTCGAAGAAACA+AGG | - | 51772:822-841 | MS.gene050769:intron | 50.0% | |
AGGCGCGTTCGAAGAAACAA+GGG | - | 51772:823-842 | MS.gene050769:intron | 50.0% | |
CGAAGAAACAAGGGAGGAAG+AGG | - | 51772:832-851 | MS.gene050769:intron | 50.0% | |
CTCTCTGATGCATCACCTGA+AGG | + | 51772:966-985 | None:intergenic | 50.0% | |
CTTGCAATCACAGCTCCCAA+AGG | + | 51772:2244-2263 | None:intergenic | 50.0% | |
GCCGTTGTGTGCTGAACAAA+AGG | - | 51772:749-768 | MS.gene050769:intron | 50.0% | |
GTGGAGAGTAGAACACAGGT+TGG | - | 51772:783-802 | MS.gene050769:intron | 50.0% | |
TAACAGGAACCAGCTGCAAG+AGG | - | 51772:1804-1823 | MS.gene050769:intron | 50.0% | |
TGGTGAACTTGATGGAGGGA+AGG | - | 51772:803-822 | MS.gene050769:intron | 50.0% | |
! | AGTGCTGAATGCAGTGAGCT+GGG | - | 51772:2207-2226 | MS.gene050769:CDS | 50.0% |
! | AGTGGTGGAGAGTAGAACAC+AGG | - | 51772:779-798 | MS.gene050769:intron | 50.0% |
! | GGCAGTTACTTTCTTGCCTC+AGG | - | 51772:1127-1146 | MS.gene050769:CDS | 50.0% |
!! | CACATGGTTGGTGCTGGTAA+CGG | - | 51772:1020-1039 | MS.gene050769:intron | 50.0% |
!! | CAGGTTGGTGAACTTGATGG+AGG | - | 51772:798-817 | MS.gene050769:intron | 50.0% |
AGGGAGGAAGAGGGATGTTG+TGG | - | 51772:842-861 | MS.gene050769:intron | 55.0% | |
CATACAATCTCGTCCCCCTG+AGG | + | 51772:1146-1165 | None:intergenic | 55.0% | |
CGCGTTCGAAGAAACAAGGG+AGG | - | 51772:826-845 | MS.gene050769:intron | 55.0% | |
GCGATTGAAGCGCACATGGT+TGG | - | 51772:1008-1027 | MS.gene050769:intron | 55.0% | |
GTGCTGAATGCAGTGAGCTG+GGG | - | 51772:2208-2227 | MS.gene050769:CDS | 55.0% | |
TGCTGAATGCAGTGAGCTGG+GGG | - | 51772:2209-2228 | MS.gene050769:CDS | 55.0% | |
TGGGGGACCTTGATGCCTTT+GGG | - | 51772:2226-2245 | MS.gene050769:CDS | 55.0% | |
!! | CACAGCTCCCAAAGGCATCA+AGG | + | 51772:2236-2255 | None:intergenic | 55.0% |
!! | GAGTGCTGAATGCAGTGAGC+TGG | - | 51772:2206-2225 | MS.gene050769:CDS | 55.0% |
CTGGGGGACCTTGATGCCTT+TGG | - | 51772:2225-2244 | MS.gene050769:CDS | 60.0% | |
! | GAAGCGCACATGGTTGGTGC+TGG | - | 51772:1014-1033 | MS.gene050769:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51772 | gene | 195 | 2263 | 195 | ID=MS.gene050769 |
51772 | mRNA | 195 | 2263 | 195 | ID=MS.gene050769.t1;Parent=MS.gene050769 |
51772 | exon | 2189 | 2263 | 2189 | ID=MS.gene050769.t1.exon1;Parent=MS.gene050769.t1 |
51772 | CDS | 2189 | 2263 | 2189 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
51772 | exon | 1417 | 1687 | 1417 | ID=MS.gene050769.t1.exon2;Parent=MS.gene050769.t1 |
51772 | CDS | 1417 | 1687 | 1417 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
51772 | exon | 1270 | 1330 | 1270 | ID=MS.gene050769.t1.exon3;Parent=MS.gene050769.t1 |
51772 | CDS | 1270 | 1330 | 1270 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
51772 | exon | 1070 | 1190 | 1070 | ID=MS.gene050769.t1.exon4;Parent=MS.gene050769.t1 |
51772 | CDS | 1070 | 1190 | 1070 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
51772 | exon | 583 | 648 | 583 | ID=MS.gene050769.t1.exon5;Parent=MS.gene050769.t1 |
51772 | CDS | 583 | 648 | 583 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
51772 | exon | 195 | 259 | 195 | ID=MS.gene050769.t1.exon6;Parent=MS.gene050769.t1 |
51772 | CDS | 195 | 259 | 195 | ID=cds.MS.gene050769.t1;Parent=MS.gene050769.t1 |
Gene Sequence |
Protein sequence |