AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23882

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23882.t1 MTR_7g021130 94.949 198 10 0 1 198 146 343 1.72e-139 399
MS.gene23882.t1 MTR_3g498755 70.854 199 56 1 2 198 133 331 4.71e-104 308
MS.gene23882.t1 MTR_8g099930 68.500 200 61 1 1 198 149 348 1.05e-99 298
MS.gene23882.t1 MTR_3g434850 61.111 198 74 1 1 198 146 340 3.24e-86 263
MS.gene23882.t1 MTR_2g449850 53.266 199 88 2 1 199 156 349 1.29e-70 223
MS.gene23882.t1 MTR_1g040370 42.714 199 72 3 1 199 146 302 9.09e-50 168
MS.gene23882.t1 MTR_3g090150 39.901 203 111 5 2 198 152 349 7.51e-45 156
MS.gene23882.t1 MTR_3g090130 39.109 202 113 5 2 198 146 342 2.15e-43 152
MS.gene23882.t1 MTR_1g102130 46.853 143 75 1 57 199 236 377 2.49e-42 150
MS.gene23882.t1 MTR_5g072570 38.614 202 118 4 2 198 147 347 2.32e-41 147
MS.gene23882.t1 MTR_3g034290 39.000 200 108 5 2 198 193 381 3.02e-40 142
MS.gene23882.t1 MTR_3g034290 39.000 200 108 5 2 198 193 381 1.45e-39 142
MS.gene23882.t1 MTR_0003s0560 38.693 199 108 5 2 198 192 378 4.45e-38 138
MS.gene23882.t1 MTR_1g021020 40.704 199 100 6 2 197 197 380 2.38e-35 131
MS.gene23882.t1 MTR_3g079600 36.364 198 114 5 2 197 195 382 4.10e-35 130
MS.gene23882.t1 MTR_4g075150 33.816 207 120 5 1 196 153 353 8.93e-35 129
MS.gene23882.t1 MTR_4g075150 34.146 205 120 5 1 196 153 351 1.05e-34 129
MS.gene23882.t1 MTR_7g013790 34.450 209 118 4 2 198 154 355 1.54e-34 128
MS.gene23882.t1 MTR_1g095560 35.644 202 117 6 2 198 154 347 5.67e-34 127
MS.gene23882.t1 MTR_1g095560 35.644 202 117 6 2 198 154 347 8.83e-34 127
MS.gene23882.t1 MTR_3g079620 36.000 200 112 6 2 199 197 382 1.26e-33 126
MS.gene23882.t1 MTR_3g079590 34.483 203 118 5 2 202 197 386 4.16e-33 125
MS.gene23882.t1 MTR_1g021010 39.086 197 97 6 5 195 198 377 4.97e-32 122
MS.gene23882.t1 MTR_3g079630 35.714 196 110 6 2 195 197 378 1.00e-31 121
MS.gene23882.t1 MTR_3g079560 34.975 203 117 4 2 202 197 386 1.20e-31 121
MS.gene23882.t1 MTR_3g079570 34.483 203 117 5 2 202 198 386 1.59e-31 120
MS.gene23882.t1 MTR_1g095540 33.333 201 123 5 2 198 154 347 1.30e-30 117
MS.gene23882.t1 MTR_4g089155 34.450 209 119 6 2 198 174 376 1.69e-30 117
MS.gene23882.t1 MTR_2g012850 33.495 206 119 5 2 195 154 353 4.42e-30 116
MS.gene23882.t1 MTR_1g020090 38.191 199 103 7 2 197 209 390 6.86e-30 116
MS.gene23882.t1 MTR_2g062980 33.333 201 123 5 2 198 160 353 7.66e-30 115
MS.gene23882.t1 MTR_2g012860 33.495 206 121 6 2 195 160 361 9.81e-30 115
MS.gene23882.t1 MTR_2g063000 33.333 201 123 5 2 198 161 354 1.55e-29 115
MS.gene23882.t1 MTR_2g062990 31.841 201 126 5 2 198 160 353 5.44e-29 113
MS.gene23882.t1 MTR_4g122950 35.122 205 102 5 3 186 159 353 2.41e-28 112
MS.gene23882.t1 MTR_0003s0560 40.714 140 74 3 2 140 192 323 1.12e-27 108
MS.gene23882.t1 MTR_2g081620 32.850 207 118 7 2 199 161 355 5.19e-26 105
MS.gene23882.t1 MTR_4g122960 31.841 201 108 6 3 184 159 349 3.64e-25 103
MS.gene23882.t1 MTR_0075s0010 34.400 125 75 1 57 174 156 280 1.89e-20 88.6
MS.gene23882.t1 MTR_2g063000 28.736 174 113 5 29 198 157 323 4.54e-16 77.0
MS.gene23882.t1 MTR_7g051430 36.620 142 72 5 5 140 155 284 2.69e-14 71.6
MS.gene23882.t1 MTR_7g051430 36.620 142 72 5 5 140 155 284 3.55e-14 71.6
MS.gene23882.t1 MTR_1g050545 25.871 201 127 5 3 198 186 369 1.72e-13 69.7
MS.gene23882.t1 MTR_8g011350 36.220 127 71 5 2 125 153 272 9.39e-13 67.4
MS.gene23882.t1 MTR_8g011350 36.220 127 71 5 2 125 153 272 9.78e-13 67.4
MS.gene23882.t1 MTR_7g080180 34.127 126 77 4 2 123 152 275 1.97e-12 66.2
MS.gene23882.t1 MTR_7g080180 34.127 126 77 4 2 123 152 275 2.10e-12 66.2
MS.gene23882.t1 MTR_1g094155 27.174 184 115 5 3 181 192 361 2.40e-12 66.2
MS.gene23882.t1 MTR_7g100560 34.211 114 36 1 2 115 151 225 3.60e-12 65.1
MS.gene23882.t1 MTR_2g095710 30.198 202 106 11 8 198 192 369 3.82e-11 62.4
MS.gene23882.t1 MTR_2g095750 39.535 86 50 2 3 86 204 289 9.69e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23882.t1 AT1G28110 77.273 198 45 0 1 198 147 344 7.65e-113 331
MS.gene23882.t1 AT1G28110 77.273 198 45 0 1 198 147 344 7.65e-113 331
MS.gene23882.t1 AT2G33530 71.000 200 56 1 1 198 149 348 5.60e-107 317
MS.gene23882.t1 AT1G43780 41.176 204 111 5 2 198 155 356 2.01e-46 160
MS.gene23882.t1 AT5G42230 40.099 202 115 4 2 198 146 346 8.02e-44 153
MS.gene23882.t1 AT5G42230 40.099 202 115 4 2 198 146 346 8.02e-44 153
MS.gene23882.t1 AT5G42240 40.594 202 114 4 2 198 150 350 4.69e-43 151
MS.gene23882.t1 AT2G12480 40.816 196 104 6 5 195 152 340 5.90e-40 143
MS.gene23882.t1 AT2G05850 34.184 196 117 4 1 195 185 369 9.01e-37 135
MS.gene23882.t1 AT3G63470 36.869 198 115 5 2 198 200 388 1.35e-35 132
MS.gene23882.t1 AT4G30610 32.381 210 123 6 2 199 152 354 8.32e-34 126
MS.gene23882.t1 AT2G35770 33.668 199 121 4 2 198 157 346 1.53e-33 125
MS.gene23882.t1 AT2G12480 38.144 194 88 6 5 195 152 316 3.18e-33 124
MS.gene23882.t1 AT2G12480 43.448 145 73 4 5 147 152 289 3.38e-32 122
MS.gene23882.t1 AT2G12480 43.448 145 73 4 5 147 152 289 3.73e-32 122
MS.gene23882.t1 AT2G24000 32.227 211 119 7 2 198 150 350 7.44e-32 121
MS.gene23882.t1 AT3G52010 36.548 197 109 7 2 195 186 369 1.09e-31 121
MS.gene23882.t1 AT3G07990 36.408 206 110 7 2 198 155 348 1.23e-31 120
MS.gene23882.t1 AT4G30810 33.333 207 118 7 2 198 157 353 1.78e-31 120
MS.gene23882.t1 AT1G61130 34.634 205 117 8 1 195 149 346 2.03e-31 120
MS.gene23882.t1 AT2G35780 31.841 201 124 5 2 198 151 342 2.33e-31 120
MS.gene23882.t1 AT5G08260 32.889 225 109 6 1 198 158 367 5.40e-31 119
MS.gene23882.t1 AT5G23210 30.088 226 122 6 1 198 74 291 6.05e-31 117
MS.gene23882.t1 AT3G02110 32.710 214 120 5 2 198 156 362 7.13e-31 119
MS.gene23882.t1 AT2G24010 34.975 203 117 6 2 198 135 328 1.16e-30 116
MS.gene23882.t1 AT5G23210 30.088 226 122 6 1 198 74 291 1.16e-30 117
MS.gene23882.t1 AT5G23210 30.088 226 122 6 1 198 75 292 1.47e-30 117
MS.gene23882.t1 AT5G23210 30.088 226 122 6 1 198 170 387 2.33e-30 117
MS.gene23882.t1 AT5G23210 30.088 226 122 6 1 198 170 387 4.08e-30 117
MS.gene23882.t1 AT2G24010 34.975 203 117 6 2 198 149 342 6.83e-30 115
MS.gene23882.t1 AT2G24010 34.975 203 117 6 2 198 164 357 9.08e-30 115
MS.gene23882.t1 AT1G11080 33.953 215 115 6 2 195 169 377 7.86e-29 113
MS.gene23882.t1 AT1G11080 33.953 215 115 6 2 195 169 377 8.08e-29 113
MS.gene23882.t1 AT4G15100 32.864 213 118 7 2 195 163 369 3.14e-28 111
MS.gene23882.t1 AT3G52000 35.025 197 112 7 2 195 181 364 4.01e-28 111
MS.gene23882.t1 AT3G17180 32.558 215 119 5 3 199 160 366 6.40e-28 110
MS.gene23882.t1 AT3G17180 32.558 215 119 5 3 199 160 366 1.26e-27 110
MS.gene23882.t1 AT3G52020 30.233 215 135 6 2 213 197 399 1.00e-25 104
MS.gene23882.t1 AT2G24010 31.140 228 117 7 2 198 135 353 5.47e-25 102
MS.gene23882.t1 AT2G24000 27.933 179 105 7 34 198 119 287 2.41e-17 80.5
MS.gene23882.t1 AT2G22990 26.840 231 134 7 9 222 37 249 3.28e-15 73.9
MS.gene23882.t1 AT3G25420 35.417 144 81 5 2 140 150 286 3.31e-15 74.7
MS.gene23882.t1 AT2G22990 26.840 231 134 7 9 222 37 249 3.44e-15 73.9
MS.gene23882.t1 AT2G22990 26.840 231 134 7 9 222 151 363 6.11e-15 73.9
MS.gene23882.t1 AT2G22990 26.840 231 134 7 9 222 151 363 8.20e-15 73.2
MS.gene23882.t1 AT2G22990 26.230 244 145 7 9 235 142 367 8.52e-15 73.2
MS.gene23882.t1 AT2G22990 26.230 244 145 7 9 235 151 376 9.47e-15 73.2
MS.gene23882.t1 AT4G12910 39.623 106 62 1 2 105 157 262 1.55e-13 69.7
MS.gene23882.t1 AT4G12910 39.623 106 62 1 2 105 157 262 1.73e-13 69.7
MS.gene23882.t1 AT1G73300 27.320 194 117 7 9 198 162 335 2.42e-12 66.2
MS.gene23882.t1 AT1G73300 27.320 194 117 7 9 198 162 335 2.42e-12 66.2
MS.gene23882.t1 AT1G73290 28.796 191 108 7 9 194 161 328 7.87e-12 64.7
MS.gene23882.t1 AT1G73290 28.796 191 108 7 9 194 161 328 9.42e-12 64.3
MS.gene23882.t1 AT5G09640 36.957 92 56 1 9 98 156 247 9.64e-12 64.3
MS.gene23882.t1 AT1G73290 35.165 91 57 1 9 97 161 251 1.33e-11 63.5
MS.gene23882.t1 AT1G73280 26.842 190 115 7 9 194 35 204 3.00e-11 62.4
MS.gene23882.t1 AT1G73280 26.842 190 115 7 9 194 162 331 3.07e-11 62.8
MS.gene23882.t1 AT1G73280 26.842 190 115 7 9 194 60 229 3.47e-11 62.4
MS.gene23882.t1 AT1G73280 26.842 190 115 7 9 194 162 331 5.46e-11 62.0

Find 36 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAGTTGTTTAATTTAAA+AGG 0.202110 7.1:+77331764 MS.gene23882:CDS
GGTGGTTGGACTCAAGTTTA+TGG 0.215056 7.1:+77333391 MS.gene23882:CDS
ATCTAATCTTCTTGCAAAAC+TGG 0.232198 7.1:+77331323 MS.gene23882:CDS
AAGCTTCTGTTTCTGTATTC+AGG 0.258582 7.1:-77331358 None:intergenic
ATTCAAGAGCTGAGTTCTTT+TGG 0.300704 7.1:+77332164 MS.gene23882:CDS
TATGCTCCAATTCAACAAAA+AGG 0.337276 7.1:+77331742 MS.gene23882:CDS
AGACTGTCAATTATCTTAAC+AGG 0.354537 7.1:+77332744 MS.gene23882:CDS
GCTCATTACACTTGAACAAA+TGG 0.365760 7.1:-77332284 None:intergenic
TCTGTTGCAAATTCTAGAAC+TGG 0.381458 7.1:-77332136 None:intergenic
GCTTTACATGCACATCTGAT+TGG 0.395553 7.1:+77332782 MS.gene23882:CDS
TACTATCATTTGCAACAGTT+AGG 0.406670 7.1:+77333419 MS.gene23882:CDS
AGCTTCTGTTTCTGTATTCA+GGG 0.412704 7.1:-77331357 None:intergenic
AGGTCATTATGTTCCTCAAT+TGG 0.418352 7.1:+77331712 MS.gene23882:intron
ACTATCATTTGCAACAGTTA+GGG 0.420978 7.1:+77333420 MS.gene23882:CDS
TACTTGTTTCTGTACTAACT+TGG 0.447886 7.1:-77332306 None:intergenic
CGATCTCTCAGGCTGTGAAA+AGG 0.457438 7.1:-77333461 None:intergenic
CTCATTACACTTGAACAAAT+GGG 0.461870 7.1:-77332283 None:intergenic
CAAAGAGAATTACCTGCTGC+AGG 0.474248 7.1:-77332822 None:intergenic
CACCTGAGTATTGAGGACTT+TGG 0.483689 7.1:-77332389 None:intergenic
CAAGAAGATTAGATTATCCC+TGG 0.488331 7.1:-77331314 None:intergenic
ACTTGAACAAATGGGAGAAA+CGG 0.502123 7.1:-77332275 None:intergenic
CAGAAGATATACAAACATCA+AGG 0.511989 7.1:-77332354 None:intergenic
ATCTGATTGGAGTACATAGA+TGG 0.512377 7.1:+77332795 MS.gene23882:CDS
AACAGCACAAGCGATCTCTC+AGG 0.518018 7.1:-77333472 None:intergenic
GATCTCTCAGGCTGTGAAAA+GGG 0.519136 7.1:-77333460 None:intergenic
ATAGATGGTCTCCCTGCAGC+AGG 0.526560 7.1:+77332810 MS.gene23882:CDS
ATCGTAGGAGAGAGCTATGC+CGG 0.540126 7.1:+77331385 MS.gene23882:CDS
ATAAACTCACCTGAGTATTG+AGG 0.563913 7.1:-77332396 None:intergenic
AGCATAAGCTCAGCCAATTG+AGG 0.572712 7.1:-77331725 None:intergenic
CAAATAGCAAGTGACTGAAA+CGG 0.583402 7.1:+77332700 MS.gene23882:intron
TATGTGAGAGAATACTATAA+CGG 0.590701 7.1:+77332250 MS.gene23882:CDS
CTATCATTTGCAACAGTTAG+GGG 0.601913 7.1:+77333421 MS.gene23882:CDS
AGAAGATATACAAACATCAA+GGG 0.621855 7.1:-77332353 None:intergenic
AACCAAAGTCCTCAATACTC+AGG 0.621880 7.1:+77332387 MS.gene23882:CDS
AAAGAGAATTACCTGCTGCA+GGG 0.624612 7.1:-77332821 None:intergenic
AACAGAAGCTTGTTCATCGT+AGG 0.672452 7.1:+77331370 MS.gene23882:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAACAAAAAATATAATAA+GGG - chr7.1:77333283-77333302 None:intergenic 10.0%
!! TTTGAACAAAAAATATAATA+AGG - chr7.1:77333284-77333303 None:intergenic 10.0%
!!! TTTTTTGTTCAAAATATTAA+TGG + chr7.1:77333291-77333310 MS.gene23882:intron 10.0%
!! AATAAGAAAAGAAGAATAAT+TGG - chr7.1:77331817-77331836 None:intergenic 15.0%
!! TAAAATACAAACTTCAAATT+TGG - chr7.1:77332509-77332528 None:intergenic 15.0%
!!! TATTACTTTGTTTATTTCTT+TGG + chr7.1:77331631-77331650 MS.gene23882:intron 15.0%
!!! TATTTACATTTTACAATTCT+AGG + chr7.1:77331573-77331592 MS.gene23882:intron 15.0%
!! ATTGTAAAAACTGTAATTGA+AGG - chr7.1:77332626-77332645 None:intergenic 20.0%
!!! AACATGTTTTATGATAAGAA+AGG - chr7.1:77333188-77333207 None:intergenic 20.0%
!!! AGAAACATGATTTTAAATTG+CGG + chr7.1:77332860-77332879 MS.gene23882:intron 20.0%
!!! ATGATAAGTTATTGTTTTAC+CGG - chr7.1:77331407-77331426 None:intergenic 20.0%
!!! GAGAAGTTGTTTAATTTAAA+AGG + chr7.1:77331764-77331783 MS.gene23882:CDS 20.0%
!!! GTGTTTTGTAATTTATCATT+AGG + chr7.1:77331692-77331711 MS.gene23882:intron 20.0%
!!! TTTAAAATCATGTTTCTTGT+AGG - chr7.1:77332857-77332876 None:intergenic 20.0%
! AAAACCAAGACAAATCTTTA+AGG - chr7.1:77331265-77331284 None:intergenic 25.0%
! ACAAATTCTACATTGAAATC+TGG + chr7.1:77333105-77333124 MS.gene23882:intron 25.0%
! AGAAGATATACAAACATCAA+GGG - chr7.1:77332356-77332375 None:intergenic 25.0%
! AGAATATTCATAACGTGTAA+GGG - chr7.1:77331461-77331480 None:intergenic 25.0%
! TAGAATATTCATAACGTGTA+AGG - chr7.1:77331462-77331481 None:intergenic 25.0%
! TATGTGAGAGAATACTATAA+CGG + chr7.1:77332250-77332269 MS.gene23882:CDS 25.0%
ACTATCATTTGCAACAGTTA+GGG + chr7.1:77333420-77333439 MS.gene23882:CDS 30.0%
AGACTGTCAATTATCTTAAC+AGG + chr7.1:77332744-77332763 MS.gene23882:CDS 30.0%
ATAAACCAGAAAGAAAAAGC+TGG - chr7.1:77331883-77331902 None:intergenic 30.0%
ATCTAATCTTCTTGCAAAAC+TGG + chr7.1:77331323-77331342 MS.gene23882:CDS 30.0%
CAGAAGATATACAAACATCA+AGG - chr7.1:77332357-77332376 None:intergenic 30.0%
CAGCAATAAGGTTTAAATTG+AGG - chr7.1:77332960-77332979 None:intergenic 30.0%
CTCATTACACTTGAACAAAT+GGG - chr7.1:77332286-77332305 None:intergenic 30.0%
TACTATCATTTGCAACAGTT+AGG + chr7.1:77333419-77333438 MS.gene23882:CDS 30.0%
TATGCTCCAATTCAACAAAA+AGG + chr7.1:77331742-77331761 MS.gene23882:CDS 30.0%
TGTACCTTAAAGATTTGTCT+TGG + chr7.1:77331258-77331277 MS.gene23882:intron 30.0%
! ACTTCTCCTTTTTGTTGAAT+TGG - chr7.1:77331751-77331770 None:intergenic 30.0%
! CATCACCTTTTTCTTTATGT+TGG + chr7.1:77331855-77331874 MS.gene23882:intron 30.0%
!! CAATCAAGTTTAAAGTACTG+AGG + chr7.1:77332642-77332661 MS.gene23882:intron 30.0%
!! TACTTGTTTCTGTACTAACT+TGG - chr7.1:77332309-77332328 None:intergenic 30.0%
!!! ATAATCTCGCTCTTATTTTC+AGG + chr7.1:77333366-77333385 MS.gene23882:intron 30.0%
AATGTCGAAGACACGTTTAA+AGG + chr7.1:77331535-77331554 MS.gene23882:intron 35.0%
ACTTGAACAAATGGGAGAAA+CGG - chr7.1:77332278-77332297 None:intergenic 35.0%
AGGTCATTATGTTCCTCAAT+TGG + chr7.1:77331712-77331731 MS.gene23882:intron 35.0%
ATATTGACATGTGTGACATG+CGG + chr7.1:77331990-77332009 MS.gene23882:intron 35.0%
ATCTGATTGGAGTACATAGA+TGG + chr7.1:77332795-77332814 MS.gene23882:CDS 35.0%
ATTTAGATCGAAGTCATGTC+CGG + chr7.1:77331938-77331957 MS.gene23882:intron 35.0%
CAAATAGCAAGTGACTGAAA+CGG + chr7.1:77332700-77332719 MS.gene23882:intron 35.0%
CAAGAAGATTAGATTATCCC+TGG - chr7.1:77331317-77331336 None:intergenic 35.0%
CAATTCAAATTCAAGAGGCA+AGG - chr7.1:77332985-77333004 None:intergenic 35.0%
CTATCATTTGCAACAGTTAG+GGG + chr7.1:77333421-77333440 MS.gene23882:CDS 35.0%
GCTCATTACACTTGAACAAA+TGG - chr7.1:77332287-77332306 None:intergenic 35.0%
GGGACTAAATTGATGCAAAT+TGG - chr7.1:77331441-77331460 None:intergenic 35.0%
GGGCATTTAACTATATGTGT+CGG - chr7.1:77333263-77333282 None:intergenic 35.0%
TACTCAGGTGAGTTTATCAT+CGG + chr7.1:77332402-77332421 MS.gene23882:intron 35.0%
TGGCACCAACATAAAGAAAA+AGG - chr7.1:77331863-77331882 None:intergenic 35.0%
TGTCTTTCTCTTTATAGCCA+GGG + chr7.1:77331297-77331316 MS.gene23882:intron 35.0%
TTCTTATTCTTGCTAGTGCT+AGG + chr7.1:77331829-77331848 MS.gene23882:intron 35.0%
TTGTCTTTCTCTTTATAGCC+AGG + chr7.1:77331296-77331315 MS.gene23882:intron 35.0%
! ATAAACTCACCTGAGTATTG+AGG - chr7.1:77332399-77332418 None:intergenic 35.0%
! ATTCAAGAGCTGAGTTCTTT+TGG + chr7.1:77332164-77332183 MS.gene23882:CDS 35.0%
!! AAGCTTCTGTTTCTGTATTC+AGG - chr7.1:77331361-77331380 None:intergenic 35.0%
!! AGCTTCTGTTTCTGTATTCA+GGG - chr7.1:77331360-77331379 None:intergenic 35.0%
!! TCTGTTGCAAATTCTAGAAC+TGG - chr7.1:77332139-77332158 None:intergenic 35.0%
AAAGAGAATTACCTGCTGCA+GGG - chr7.1:77332824-77332843 None:intergenic 40.0%
AACCAAAGTCCTCAATACTC+AGG + chr7.1:77332387-77332406 MS.gene23882:CDS 40.0%
ATCCGTGCATTCAGATACAT+TGG - chr7.1:77332601-77332620 None:intergenic 40.0%
CACACATGTCAATATCGTGT+TGG - chr7.1:77331985-77332004 None:intergenic 40.0%
CACCAATGTATCTGAATGCA+CGG + chr7.1:77332596-77332615 MS.gene23882:intron 40.0%
GCAGGCAATTCAAATTCAAG+AGG - chr7.1:77332990-77333009 None:intergenic 40.0%
GCTTTACATGCACATCTGAT+TGG + chr7.1:77332782-77332801 MS.gene23882:CDS 40.0%
GTTGATCGATCAAGATTGTG+CGG - chr7.1:77332576-77332595 None:intergenic 40.0%
TCGACATTGTTACCAATGCA+GGG - chr7.1:77331523-77331542 None:intergenic 40.0%
TTCGACATTGTTACCAATGC+AGG - chr7.1:77331524-77331543 None:intergenic 40.0%
TTGGTTATCGTTGGACTGTT+CGG - chr7.1:77333136-77333155 None:intergenic 40.0%
! AACAGAAGCTTGTTCATCGT+AGG + chr7.1:77331370-77331389 MS.gene23882:CDS 40.0%
!!! CTTATTTTCAGGTTGGTGGT+TGG + chr7.1:77333377-77333396 MS.gene23882:intron 40.0%
!!! TCTCGCTCTTATTTTCAGGT+TGG + chr7.1:77333370-77333389 MS.gene23882:intron 40.0%
AGCATAAGCTCAGCCAATTG+AGG - chr7.1:77331728-77331747 None:intergenic 45.0%
CAAAGAGAATTACCTGCTGC+AGG - chr7.1:77332825-77332844 None:intergenic 45.0%
CACTGACACATGTTTGACAC+CGG - chr7.1:77331960-77331979 None:intergenic 45.0%
CATTGTTACCAATGCAGGGA+CGG - chr7.1:77331519-77331538 None:intergenic 45.0%
CGTGCATTCAGATACATTGG+TGG - chr7.1:77332598-77332617 None:intergenic 45.0%
GATCTCTCAGGCTGTGAAAA+GGG - chr7.1:77333463-77333482 None:intergenic 45.0%
GGTGAGTTTATCATCGGATC+TGG + chr7.1:77332408-77332427 MS.gene23882:intron 45.0%
GGTGGTTGGACTCAAGTTTA+TGG + chr7.1:77333391-77333410 MS.gene23882:CDS 45.0%
TCCAACGATAACCAATGTGC+CGG + chr7.1:77333141-77333160 MS.gene23882:intron 45.0%
! GAGTTTGCTTTCATGCAGCT+TGG + chr7.1:77332109-77332128 MS.gene23882:intron 45.0%
! GCTGAGTTCTTTTGGTCTCA+TGG + chr7.1:77332172-77332191 MS.gene23882:CDS 45.0%
!! CACCTGAGTATTGAGGACTT+TGG - chr7.1:77332392-77332411 None:intergenic 45.0%
!! CATGGAATTGTGTTGACTGC+AGG - chr7.1:77333008-77333027 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTGT+AGG - chr7.1:77333252-77333271 None:intergenic 45.0%
!! TGGTGCCAGCTTTTTCTTTC+TGG + chr7.1:77331875-77331894 MS.gene23882:intron 45.0%
!!! CGCTCTTATTTTCAGGTTGG+TGG + chr7.1:77333373-77333392 MS.gene23882:intron 45.0%
AACAGCACAAGCGATCTCTC+AGG - chr7.1:77333475-77333494 None:intergenic 50.0%
AATCAAGTCCGTCCCTGCAT+TGG + chr7.1:77331508-77331527 MS.gene23882:intron 50.0%
AGAGGCAAGGCACAGCAATA+AGG - chr7.1:77332972-77332991 None:intergenic 50.0%
ATCGTAGGAGAGAGCTATGC+CGG + chr7.1:77331385-77331404 MS.gene23882:CDS 50.0%
CGATCTCTCAGGCTGTGAAA+AGG - chr7.1:77333464-77333483 None:intergenic 50.0%
! AATGCAGGGACGGACTTGAT+TGG - chr7.1:77331509-77331528 None:intergenic 50.0%
! CGGTGTCAAACATGTGTCAG+TGG + chr7.1:77331958-77331977 MS.gene23882:intron 50.0%
ATAGATGGTCTCCCTGCAGC+AGG + chr7.1:77332810-77332829 MS.gene23882:CDS 55.0%
CATGCAGTCAGGCACATTGG+CGG + chr7.1:77332459-77332478 MS.gene23882:intron 55.0%
CATTCACACAGCCGGCACAT+TGG - chr7.1:77333155-77333174 None:intergenic 55.0%
CCATGCAGTCAGCACATCAG+TGG + chr7.1:77333023-77333042 MS.gene23882:intron 55.0%
CTCCCACACATTCACACAGC+CGG - chr7.1:77333163-77333182 None:intergenic 55.0%
CTGCATGCAGTCAGGCACAT+TGG + chr7.1:77332456-77332475 MS.gene23882:intron 55.0%
GAGGTGTGCAACTGCGATTC+TGG - chr7.1:77332941-77332960 None:intergenic 55.0%
TGCCTGACTGCATGCAGTCA+CGG - chr7.1:77332453-77332472 None:intergenic 55.0%
! GCCGGCACATTGGTTATCGT+TGG - chr7.1:77333145-77333164 None:intergenic 55.0%
! TGCCGGCTGTGTGAATGTGT+GGG + chr7.1:77333158-77333177 MS.gene23882:intron 55.0%
!! CCACTGATGTGCTGACTGCA+TGG - chr7.1:77333026-77333045 None:intergenic 55.0%
!! GTCGGTGTCGTGTAGGACAT+TGG - chr7.1:77333245-77333264 None:intergenic 55.0%
GCCTGACTGCATGCAGTCAC+GGG - chr7.1:77332452-77332471 None:intergenic 60.0%
TCCCGTGACTGCATGCAGTC+AGG + chr7.1:77332448-77332467 MS.gene23882:intron 60.0%
!! GTGCCGGCTGTGTGAATGTG+TGG + chr7.1:77333157-77333176 MS.gene23882:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 77331252 77333508 77331252 ID=MS.gene23882
chr7.1 mRNA 77331252 77333508 77331252 ID=MS.gene23882.t1;Parent=MS.gene23882
chr7.1 exon 77331252 77331258 77331252 ID=MS.gene23882.t1.exon1;Parent=MS.gene23882.t1
chr7.1 CDS 77331252 77331258 77331252 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
chr7.1 exon 77331314 77331406 77331314 ID=MS.gene23882.t1.exon2;Parent=MS.gene23882.t1
chr7.1 CDS 77331314 77331406 77331314 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
chr7.1 exon 77331714 77331793 77331714 ID=MS.gene23882.t1.exon3;Parent=MS.gene23882.t1
chr7.1 CDS 77331714 77331793 77331714 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
chr7.1 exon 77332127 77332408 77332127 ID=MS.gene23882.t1.exon4;Parent=MS.gene23882.t1
chr7.1 CDS 77332127 77332408 77332127 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
chr7.1 exon 77332707 77332831 77332707 ID=MS.gene23882.t1.exon5;Parent=MS.gene23882.t1
chr7.1 CDS 77332707 77332831 77332707 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
chr7.1 exon 77333388 77333508 77333388 ID=MS.gene23882.t1.exon6;Parent=MS.gene23882.t1
chr7.1 CDS 77333388 77333508 77333388 ID=cds.MS.gene23882.t1;Parent=MS.gene23882.t1
Gene Sequence

>MS.gene23882

ATGTCATGTACCTTAAAGATTTGTCTTGGTTTTCTGAAATTATTTTGTCTTTCTCTTTATAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTGAAGTTCCCTGAATACAGAAACAGAAGCTTGTTCATCGTAGGAGAGAGCTATGCCGGTAAAACAATAACTTATCATTGAATAAATATCCAATTTGCATCAATTTAGTCCCTTACACGTTATGAATATTCTAAAATGATCTTGAAATTGTAAAACTCCAATCAAGTCCGTCCCTGCATTGGTAACAATGTCGAAGACACGTTTAAAGGAATCAAGATGAATTTTATTTACATTTTACAATTCTAGGCATCATTTTGAAATATTTAATATTTACTCATTTATTATTACTTTGTTTATTTCTTTGGTGAAGTTGAGATAATAACATAATTATGCAGCTAATGATGTGTTTTGTAATTTATCATTAGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTGTAAGTTAAAGCACAAACTTCCAATTATTCTTCTTTTCTTATTCTTGCTAGTGCTAGGCTTCATCACCTTTTTCTTTATGTTGGTGCCAGCTTTTTCTTTCTGGTTTATGTAAAAGTAACTGAAGAAAACTAAATACTACTAAAATTTAGATCGAAGTCATGTCCGGTGTCAAACATGTGTCAGTGGTCCAACACGATATTGACATGTGTGACATGCGGTTACATTCAATCACTTTTTATTTTCTTAATTTACTACAAGTGTTTACGTGTCAATGTGAGTATCGTGTTTGTATCAGTGCTTTTGTTGTAGCTAACGAGTTTGCTTTCATGCAGCTTGGTAATCCAGTTCTAGAATTTGCAACAGACTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCATGGATTGATCTCAGACTTAACATTTAAAATGTTCACTTCAGTTTGTAACTATTCAAGATATGTGAGAGAATACTATAACGGTGCCGTTTCTCCCATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATACTCAGGTGAGTTTATCATCGGATCTGGATTGTGCGCTATCACAATCCCGTGACTGCATGCAGTCAGGCACATTGGCGGTTGTTTAGTCAAATATCACATAGTCCAAATTTGAAGTTTGTATTTTAGATTTTTAAAATAATGCAAAAAAATGTATACGTTGAAATCTAGACCGCACAATCTTGATCGATCAACCACCAATGTATCTGAATGCACGGATGTCCTTCAATTACAGTTTTTACAATCAAGTTTAAAGTACTGAGGTATGACATGATGCTCGTGTTTTTGTTGTCATTTGTCAAATAGCAAGTGACTGAAACGGTTGATGTATGCGTTGAAGACGAGACTGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACATGCACATCTGATTGGAGTACATAGATGGTCTCCCTGCAGCAGGTAATTCTCTTTGTATAATGTGCCTACAAGAAACATGATTTTAAATTGCGGTTGCAATTGCAGTCGCGATACAGTTACAAAATATCTTCAAATCTGTATTCTGCGACCAGAATCGCAGTTGCACACCTCAATTTAAACCTTATTGCTGTGCCTTGCCTCTTGAATTTGAATTGCCTGCAGTCAACACAATTCCATGCAGTCAGCACATCAGTGGTCGTTAGATTGTATTAAACGATTCATATTTCAAGCTCTTTATTTAGATTATCTAAAAAAACAAATTCTACATTGAAATCTGGATCGTCCGAACAGTCCAACGATAACCAATGTGCCGGCTGTGTGAATGTGTGGGAGTTCCTTTCTTATCATAAAACATGTTTTTGCTTTTTATAGTACATATATAAGACATGTGTCCAATGTCCTACACGACACCGACACATATAGTTAAATGCCCTTATTATATTTTTTGTTCAAAATATTAATGGTATCGACGTGTTAGAGTCATGTCTCGTGTATGTGTCTATGTCGTGCTTAAGAATAATCTCGCTCTTATTTTCAGGTTGGTGGTTGGACTCAAGTTTATGGCAACATACTATCATTTGCAACAGTTAGGGGAGCATCACATGAAGTACCCTTTTCACAGCCTGAGAGATCGCTTGTGCTGTTTAAGTCTTTCTTAG
Protein sequence

>MS.gene23882.t1

MSSRDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNTQQVTETVDVCVEDETVNYLNRKDVQSALHAHLIGVHRWSPCSRLVVGLKFMATYYHLQQLGEHHMKYPFHSLRDRLCCLSLS