Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23976.t1 | XP_024635315.1 | 99.5 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 2.50E-230 | 807.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23976.t1 | Q6K9N6 | 86.2 | 419 | 58 | 0 | 1 | 419 | 1 | 419 | 2.3e-205 | 716.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23976.t1 | A0A072VL01 | 99.5 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 1.8e-230 | 807.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050116 | MS.gene23976 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene056665 | MS.gene23976 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene057213 | MS.gene23976 | 0.805513 | 1.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23976.t1 | MTR_1g069645 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23976.t1 | AT2G20420 | 85.885 | 418 | 59 | 0 | 2 | 419 | 1 | 418 | 0.0 | 747 |
Find 82 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTTGAATATCTCTTTC+TGG | 0.175075 | 1.3:-49135788 | None:intergenic |
| GCTTATTATTGCTTGTAAAA+AGG | 0.205295 | 1.3:+49135311 | MS.gene23976:intron |
| AAGGCAGATTTAAATTATAT+TGG | 0.212296 | 1.3:+49136724 | MS.gene23976:CDS |
| ATTGGGTTAGATGGAGAAAT+TGG | 0.248780 | 1.3:+49136742 | MS.gene23976:CDS |
| TTAAATTATATTGGGTTAGA+TGG | 0.259385 | 1.3:+49136733 | MS.gene23976:CDS |
| ATTTCCAGACATGATTATTA+AGG | 0.260056 | 1.3:+49135365 | MS.gene23976:CDS |
| TGATTCTGACTGCACTCTTT+TGG | 0.271327 | 1.3:+49135589 | MS.gene23976:CDS |
| TGATTTCTATCAGCCACTTT+AGG | 0.310229 | 1.3:-49135527 | None:intergenic |
| ATTAATAACGGCTGAAGATT+TGG | 0.314200 | 1.3:+49137895 | MS.gene23976:CDS |
| GCTGAATTGATGAGCAAATA+TGG | 0.315960 | 1.3:+49133354 | MS.gene23976:CDS |
| TGACAAAGTGAAGGCGATTT+TGG | 0.316363 | 1.3:+49137159 | MS.gene23976:CDS |
| AGGCAGATTTAAATTATATT+GGG | 0.326373 | 1.3:+49136725 | MS.gene23976:CDS |
| ACCACCGACATCCAGAAAAT+TGG | 0.337667 | 1.3:-49136836 | None:intergenic |
| CCTTCAAGACGAACTATTAC+TGG | 0.352447 | 1.3:-49137692 | None:intergenic |
| TTAGCCGGTGGACGAGGATT+GGG | 0.369874 | 1.3:+49133841 | MS.gene23976:CDS |
| ACCGGGGAATGCATCTTTGA+TGG | 0.376142 | 1.3:-49133430 | None:intergenic |
| TGCAAAGGTTGTTGATGGTT+TGG | 0.380876 | 1.3:+49135502 | MS.gene23976:CDS |
| TGAGGAAACCGCTACGCCTC+TGG | 0.390330 | 1.3:-49133388 | None:intergenic |
| TCTCAACATCCACGAGTATC+AGG | 0.395102 | 1.3:+49133198 | MS.gene23976:CDS |
| TACAAAACAGTCAGGTCCTC+AGG | 0.399292 | 1.3:+49134176 | MS.gene23976:CDS |
| TTCTGCAAGGTCTTCAATGC+TGG | 0.400023 | 1.3:-49135340 | None:intergenic |
| TTTAGCCGGTGGACGAGGAT+TGG | 0.412502 | 1.3:+49133840 | MS.gene23976:CDS |
| CTCTCTCCGTCGCCGGCACA+TGG | 0.417809 | 1.3:+49133155 | MS.gene23976:CDS |
| CCAGTAATAGTTCGTCTTGA+AGG | 0.437190 | 1.3:+49137692 | MS.gene23976:CDS |
| AATGTACTTTGCTATAACTC+TGG | 0.458552 | 1.3:+49135090 | MS.gene23976:CDS |
| CAAACCTTAATAATCATGTC+TGG | 0.470096 | 1.3:-49135369 | None:intergenic |
| GATGCTGCAAAGGTTGTTGA+TGG | 0.481004 | 1.3:+49135497 | MS.gene23976:CDS |
| GGCTGCATGGTGAATGGAGC+AGG | 0.482177 | 1.3:+49136763 | MS.gene23976:CDS |
| GGATCGTAAGACTGCTGGTC+CGG | 0.485726 | 1.3:+49135111 | MS.gene23976:CDS |
| TAGCATCAGCAGCTACTAGT+TGG | 0.488406 | 1.3:-49135734 | None:intergenic |
| TTATCAGCTGTCTCCGCCAT+GGG | 0.493856 | 1.3:-49135711 | None:intergenic |
| CGCCTTCACTTTGTCATCAG+CGG | 0.496140 | 1.3:-49137152 | None:intergenic |
| GGATCAGGTGGCTGCTGCAA+AGG | 0.496306 | 1.3:+49136705 | MS.gene23976:intron |
| GTTATCAGCTGTCTCCGCCA+TGG | 0.498469 | 1.3:-49135712 | None:intergenic |
| GAAGGCACCAATGTTGATCA+AGG | 0.499839 | 1.3:+49137710 | MS.gene23976:CDS |
| AATAGTGAATGCTGCAAAGC+AGG | 0.513542 | 1.3:+49137228 | MS.gene23976:CDS |
| GCCATCAAAGATGCATTCCC+CGG | 0.516361 | 1.3:+49133429 | MS.gene23976:CDS |
| GAAATTGGCTGCATGGTGAA+TGG | 0.525680 | 1.3:+49136757 | MS.gene23976:CDS |
| GAGGAAACCGCTACGCCTCT+GGG | 0.528679 | 1.3:-49133387 | None:intergenic |
| CTGTTGATTCTGCCATGTGC+CGG | 0.536899 | 1.3:-49133167 | None:intergenic |
| TGATGGTTTGGCTCCTAAAG+TGG | 0.542936 | 1.3:+49135514 | MS.gene23976:CDS |
| ACTCTGGATCGTAAGACTGC+TGG | 0.543398 | 1.3:+49135106 | MS.gene23976:CDS |
| AAGTGGTATGGCATTAATAA+CGG | 0.545339 | 1.3:+49137883 | MS.gene23976:CDS |
| TAGCCGGTGGACGAGGATTG+GGG | 0.546458 | 1.3:+49133842 | MS.gene23976:CDS |
| TCTCGCTCTCTCTCCGTCGC+CGG | 0.547633 | 1.3:+49133148 | MS.gene23976:CDS |
| GTTTCAACAGGAAAGTGGTA+TGG | 0.559539 | 1.3:+49137871 | MS.gene23976:intron |
| AGTCCCCAATCCTCGTCCAC+CGG | 0.563023 | 1.3:-49133845 | None:intergenic |
| TGGTGCTGCCTCTGAAAACC+AGG | 0.565708 | 1.3:+49136855 | MS.gene23976:CDS |
| ATACTAGTTACAAAACAGTC+AGG | 0.567777 | 1.3:+49134168 | MS.gene23976:CDS |
| TGAATGTTTCAACAGGAAAG+TGG | 0.569848 | 1.3:+49137866 | MS.gene23976:intron |
| ATTCTGCCATGTGCCGGCGA+CGG | 0.571062 | 1.3:-49133161 | None:intergenic |
| GACCAGGTTGAAGATATAGC+TGG | 0.576329 | 1.3:+49133910 | MS.gene23976:CDS |
| AAGTGTGATGTTATAGCAAG+TGG | 0.576361 | 1.3:+49137205 | MS.gene23976:CDS |
| ATGGATATAATTAAGTTGCA+TGG | 0.580190 | 1.3:+49136802 | MS.gene23976:CDS |
| CAACTTAATTATATCCATTG+TGG | 0.580693 | 1.3:-49136797 | None:intergenic |
| TACTGATGAAGATGCTGCAA+AGG | 0.593207 | 1.3:+49135487 | MS.gene23976:CDS |
| ACAAAACAGTCAGGTCCTCA+GGG | 0.599578 | 1.3:+49134177 | MS.gene23976:CDS |
| GGATTGGGGACTTTCAAAAG+TGG | 0.603342 | 1.3:+49133856 | MS.gene23976:CDS |
| ACTTCGTGATACAACACAAG+AGG | 0.604434 | 1.3:+49135806 | MS.gene23976:CDS |
| TAACGTTCCCAGAGGCGTAG+CGG | 0.610301 | 1.3:+49133380 | MS.gene23976:CDS |
| TCTTTCACAGATCAATCCCA+TGG | 0.610578 | 1.3:+49135695 | MS.gene23976:intron |
| GCATTTAACTATACCTCTCG+AGG | 0.610638 | 1.3:-49135831 | None:intergenic |
| TCAAGGGAAAAGCATTCTGA+AGG | 0.611993 | 1.3:+49137727 | MS.gene23976:CDS |
| TATCTCTTTCTGGCGATATG+CGG | 0.620041 | 1.3:-49135778 | None:intergenic |
| AGATGGAGAAATTGGCTGCA+TGG | 0.622314 | 1.3:+49136750 | MS.gene23976:CDS |
| AAGGCACCAATGTTGATCAA+GGG | 0.623746 | 1.3:+49137711 | MS.gene23976:CDS |
| CCGACATCCAGAAAATTGGC+AGG | 0.624013 | 1.3:-49136832 | None:intergenic |
| AACCGCTGATGACAAAGTGA+AGG | 0.632167 | 1.3:+49137150 | MS.gene23976:CDS |
| TGCATTCCCCGGTCAAAACG+AGG | 0.636965 | 1.3:+49133440 | MS.gene23976:CDS |
| AGGGTTAGCAATGGCCACAA+TGG | 0.643855 | 1.3:+49136783 | MS.gene23976:CDS |
| CGAGAGGGACCTGATACTCG+TGG | 0.643858 | 1.3:-49133207 | None:intergenic |
| ACCCTAACAACAATGGTCAG+AGG | 0.649848 | 1.3:+49133106 | None:intergenic |
| GAATGGAGCAGGGTTAGCAA+TGG | 0.649914 | 1.3:+49136774 | MS.gene23976:CDS |
| GCACATTGTTAAGACTGACC+AGG | 0.652128 | 1.3:+49133894 | MS.gene23976:CDS |
| TACCAGCTATATCTTCAACC+TGG | 0.653753 | 1.3:-49133912 | None:intergenic |
| GATACTCGTGGATGTTGAGA+CGG | 0.670255 | 1.3:-49133195 | None:intergenic |
| AACACAAGAGGATCCTCGAG+AGG | 0.699355 | 1.3:+49135818 | MS.gene23976:CDS |
| ACTCGTGGATGTTGAGACGG+CGG | 0.714705 | 1.3:-49133192 | None:intergenic |
| GATATAATTAAGTTGCATGG+CGG | 0.729232 | 1.3:+49136805 | MS.gene23976:CDS |
| GCTGCATGGTGAATGGAGCA+GGG | 0.729760 | 1.3:+49136764 | MS.gene23976:CDS |
| TTCACAGATCAATCCCATGG+CGG | 0.738791 | 1.3:+49135698 | MS.gene23976:intron |
| TATGGAGTTAACGTTCCCAG+AGG | 0.766145 | 1.3:+49133372 | MS.gene23976:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATAAAATAAAAAA+AGG | - | chr1.3:49137608-49137627 | None:intergenic | 0.0% |
| !! | AATAAATTAATACTTATGAA+TGG | - | chr1.3:49134026-49134045 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAAAATTCAGT+TGG | - | chr1.3:49134697-49134716 | None:intergenic | 10.0% |
| !! | ATTATATAAAACTGCTAATA+AGG | - | chr1.3:49137385-49137404 | None:intergenic | 15.0% |
| !! | GTATGTAAAAAAATAAAAAG+TGG | - | chr1.3:49134956-49134975 | None:intergenic | 15.0% |
| !!! | AAAGTAAGATTTTAATAATC+AGG | - | chr1.3:49136612-49136631 | None:intergenic | 15.0% |
| !!! | ATTAAAACATTTTGCAATTA+TGG | - | chr1.3:49133612-49133631 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTGATTTTTTTT+TGG | + | chr1.3:49134093-49134112 | MS.gene23976:intron | 15.0% |
| !!! | GTATGCATTTTAAAATAAAA+TGG | - | chr1.3:49134920-49134939 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTTAAAGCACT+GGG | + | chr1.3:49137613-49137632 | MS.gene23976:intron | 15.0% |
| !!! | TTATTAGCAGTTTTATATAA+TGG | + | chr1.3:49137384-49137403 | MS.gene23976:intron | 15.0% |
| !!! | TTATTTTATTTTTAAAGCAC+TGG | + | chr1.3:49137612-49137631 | MS.gene23976:intron | 15.0% |
| !!! | TTTTATATAATGGTTTTGTT+TGG | + | chr1.3:49137394-49137413 | MS.gene23976:intron | 15.0% |
| !!! | TTTTTTTGTTTAACTAATTG+AGG | + | chr1.3:49133568-49133587 | MS.gene23976:intron | 15.0% |
| !! | AAGGCAGATTTAAATTATAT+TGG | + | chr1.3:49136724-49136743 | MS.gene23976:CDS | 20.0% |
| !! | AGGCAGATTTAAATTATATT+GGG | + | chr1.3:49136725-49136744 | MS.gene23976:CDS | 20.0% |
| !! | CAATATAAGTTATTATTGTG+TGG | - | chr1.3:49136089-49136108 | None:intergenic | 20.0% |
| !! | CATCTTATATAGAATTAGAA+AGG | - | chr1.3:49133998-49134017 | None:intergenic | 20.0% |
| !! | CTGTAAAAAAATTAGACAAT+TGG | - | chr1.3:49135035-49135054 | None:intergenic | 20.0% |
| !! | CTTATTATTGCTTGTAAAAA+GGG | + | chr1.3:49135312-49135331 | MS.gene23976:CDS | 20.0% |
| !! | GTACATATAGATATAACAAT+TGG | - | chr1.3:49134795-49134814 | None:intergenic | 20.0% |
| !! | TATACACTTAAAACCATTTA+TGG | + | chr1.3:49134754-49134773 | MS.gene23976:intron | 20.0% |
| !! | TATTCAATTTGAATTTAGAG+AGG | + | chr1.3:49134042-49134061 | MS.gene23976:intron | 20.0% |
| !! | TTAAAACCATTTATGGTATT+TGG | + | chr1.3:49134761-49134780 | MS.gene23976:intron | 20.0% |
| !! | TTATTATTGGTCAAATTTAG+AGG | - | chr1.3:49135248-49135267 | None:intergenic | 20.0% |
| !!! | AAAATGTTTTAATGCATGTT+TGG | + | chr1.3:49133619-49133638 | MS.gene23976:intron | 20.0% |
| !!! | AAAGTTTAGTCATTTTTTTC+TGG | + | chr1.3:49134473-49134492 | MS.gene23976:intron | 20.0% |
| !!! | ACTTGATAATCTAGATTTTT+TGG | + | chr1.3:49134079-49134098 | MS.gene23976:intron | 20.0% |
| !!! | AGAATAAAGCTGTTTTTAAA+CGG | - | chr1.3:49137296-49137315 | None:intergenic | 20.0% |
| !!! | AGTATAACCTTTAAAATTCA+CGG | - | chr1.3:49133680-49133699 | None:intergenic | 20.0% |
| !!! | ATTTCTGTTTTATATTACAC+AGG | + | chr1.3:49135860-49135879 | MS.gene23976:intron | 20.0% |
| !!! | ATTTTATTTTTAAAGCACTG+GGG | + | chr1.3:49137614-49137633 | MS.gene23976:intron | 20.0% |
| !!! | CAATTGTCTAATTTTTTTAC+AGG | + | chr1.3:49135033-49135052 | MS.gene23976:intron | 20.0% |
| !!! | TTAAATTATATTGGGTTAGA+TGG | + | chr1.3:49136733-49136752 | MS.gene23976:CDS | 20.0% |
| !!! | TTTCAATTTTCGTGAAATTA+GGG | + | chr1.3:49133330-49133349 | MS.gene23976:intron | 20.0% |
| !!! | TTTGAAGCATTTTTATATAG+TGG | + | chr1.3:49137422-49137441 | MS.gene23976:intron | 20.0% |
| !!! | TTTTAGAGAACAAAATTGTT+TGG | - | chr1.3:49134272-49134291 | None:intergenic | 20.0% |
| !!! | TTTTATATAGTGGTTTTGTT+TGG | + | chr1.3:49137432-49137451 | MS.gene23976:intron | 20.0% |
| !!! | TTTTCAATTTTCGTGAAATT+AGG | + | chr1.3:49133329-49133348 | MS.gene23976:intron | 20.0% |
| ! | AAAAACCACTTAGAATCTAA+CGG | - | chr1.3:49134820-49134839 | None:intergenic | 25.0% |
| ! | AAATACATCATGTGAAATCT+TGG | - | chr1.3:49136586-49136605 | None:intergenic | 25.0% |
| ! | AACTGATGATAAGAAACAAA+AGG | - | chr1.3:49136641-49136660 | None:intergenic | 25.0% |
| ! | AATTGTCCTGAATAAAATGT+TGG | + | chr1.3:49136236-49136255 | MS.gene23976:intron | 25.0% |
| ! | ATACGTAGAATATATATGCA+AGG | + | chr1.3:49134972-49134991 | MS.gene23976:intron | 25.0% |
| ! | ATTTCCAGACATGATTATTA+AGG | + | chr1.3:49135365-49135384 | MS.gene23976:CDS | 25.0% |
| ! | ATTTGAACAAAAACATCTCA+AGG | - | chr1.3:49137085-49137104 | None:intergenic | 25.0% |
| ! | CAACTTAATTATATCCATTG+TGG | - | chr1.3:49136800-49136819 | None:intergenic | 25.0% |
| ! | CATATCAATCTTATTGATGT+AGG | - | chr1.3:49136922-49136941 | None:intergenic | 25.0% |
| ! | GCTTATTATTGCTTGTAAAA+AGG | + | chr1.3:49135311-49135330 | MS.gene23976:intron | 25.0% |
| ! | TAAAGCTAATATACTGACAT+AGG | - | chr1.3:49135144-49135163 | None:intergenic | 25.0% |
| ! | TACGTAGAATATATATGCAA+GGG | + | chr1.3:49134973-49134992 | MS.gene23976:intron | 25.0% |
| ! | TATATAGAATTAGAAAGGCA+TGG | - | chr1.3:49133993-49134012 | None:intergenic | 25.0% |
| ! | TATGGAAAACTTCATAACAA+AGG | - | chr1.3:49133594-49133613 | None:intergenic | 25.0% |
| ! | TGGAACTATTTGATATTGAA+AGG | + | chr1.3:49137452-49137471 | MS.gene23976:intron | 25.0% |
| ! | TTTGAATTTAGAGAGGTTAT+AGG | + | chr1.3:49134049-49134068 | MS.gene23976:intron | 25.0% |
| !! | AACATCTTTTGTAACAATCA+GGG | + | chr1.3:49136027-49136046 | MS.gene23976:intron | 25.0% |
| !! | ATGGATATAATTAAGTTGCA+TGG | + | chr1.3:49136802-49136821 | MS.gene23976:CDS | 25.0% |
| !! | CATTTTATTCAGGACAATTT+TGG | - | chr1.3:49136235-49136254 | None:intergenic | 25.0% |
| !! | TAGCTTTTACAAAATCACAA+TGG | + | chr1.3:49133703-49133722 | MS.gene23976:intron | 25.0% |
| !! | TATTTGAAATTTACACCCTT+TGG | + | chr1.3:49134370-49134389 | MS.gene23976:intron | 25.0% |
| !! | TTCTCTAAAAATCGAAATTC+TGG | + | chr1.3:49134282-49134301 | MS.gene23976:intron | 25.0% |
| !!! | ACAAACCATCTCTTTTAAAA+AGG | + | chr1.3:49137779-49137798 | MS.gene23976:intron | 25.0% |
| !!! | ATGGTTTTAAGTGTATAACT+TGG | - | chr1.3:49134751-49134770 | None:intergenic | 25.0% |
| !!! | TGTGTCTTATAACTTTTTTC+TGG | + | chr1.3:49136684-49136703 | MS.gene23976:intron | 25.0% |
| !!! | TTAATTTTGATCTATGACGT+GGG | + | chr1.3:49137515-49137534 | MS.gene23976:intron | 25.0% |
| !!! | TTATAACTTTTTTCTGGATC+AGG | + | chr1.3:49136690-49136709 | MS.gene23976:intron | 25.0% |
| !!! | TTCTCTTGCTGTTATTTTTT+AGG | + | chr1.3:49137655-49137674 | MS.gene23976:intron | 25.0% |
| !!! | TTGGTGATTTTTTTTTGGTT+TGG | + | chr1.3:49134098-49134117 | MS.gene23976:intron | 25.0% |
| !!! | TTGTCATTGTTGTTTTTTCA+GGG | + | chr1.3:49134130-49134149 | MS.gene23976:intron | 25.0% |
| !!! | TTTAATTTTGATCTATGACG+TGG | + | chr1.3:49137514-49137533 | MS.gene23976:intron | 25.0% |
| !!! | TTTGTCATTGTTGTTTTTTC+AGG | + | chr1.3:49134129-49134148 | MS.gene23976:intron | 25.0% |
| AACCATTTATGGTATTTGGT+AGG | + | chr1.3:49134765-49134784 | MS.gene23976:intron | 30.0% | |
| AAGTGGTATGGCATTAATAA+CGG | + | chr1.3:49137883-49137902 | MS.gene23976:CDS | 30.0% | |
| AATTATGGTCTACAGAATCA+TGG | - | chr1.3:49133470-49133489 | None:intergenic | 30.0% | |
| ACATATGATAGAGAATGAAC+AGG | + | chr1.3:49137323-49137342 | MS.gene23976:intron | 30.0% | |
| ACCTTGTCGAAATAATAACT+GGG | - | chr1.3:49136206-49136225 | None:intergenic | 30.0% | |
| ACGTAGAATATATATGCAAG+GGG | + | chr1.3:49134974-49134993 | MS.gene23976:intron | 30.0% | |
| AGATGTTCTACAATATTGAG+CGG | - | chr1.3:49136014-49136033 | None:intergenic | 30.0% | |
| ATAAAAACCCTTGGAATTTC+AGG | - | chr1.3:49137001-49137020 | None:intergenic | 30.0% | |
| ATACTAGTTACAAAACAGTC+AGG | + | chr1.3:49134168-49134187 | MS.gene23976:CDS | 30.0% | |
| ATGGACATGAAATGAAAACA+AGG | - | chr1.3:49133974-49133993 | None:intergenic | 30.0% | |
| ATGTAAACCAAATATTGGGT+TGG | + | chr1.3:49136180-49136199 | MS.gene23976:intron | 30.0% | |
| ATTAATAACGGCTGAAGATT+TGG | + | chr1.3:49137895-49137914 | MS.gene23976:CDS | 30.0% | |
| ATTATTGCTTGTAAAAAGGG+AGG | + | chr1.3:49135315-49135334 | MS.gene23976:CDS | 30.0% | |
| ATTGAACTGAGAAACAACAA+AGG | - | chr1.3:49133948-49133967 | None:intergenic | 30.0% | |
| CAAACCTTAATAATCATGTC+TGG | - | chr1.3:49135372-49135391 | None:intergenic | 30.0% | |
| CATATGATAGAGAATGAACA+GGG | + | chr1.3:49137324-49137343 | MS.gene23976:intron | 30.0% | |
| CTGCATGTAAACCAAATATT+GGG | + | chr1.3:49136176-49136195 | MS.gene23976:intron | 30.0% | |
| GAAGTTTGAATATCTCTTTC+TGG | - | chr1.3:49135791-49135810 | None:intergenic | 30.0% | |
| GTTCATTCTCTATCATATGT+AGG | - | chr1.3:49137323-49137342 | None:intergenic | 30.0% | |
| TATGAAACAGGATGATATCT+TGG | - | chr1.3:49136432-49136451 | None:intergenic | 30.0% | |
| TCTGCATGTAAACCAAATAT+TGG | + | chr1.3:49136175-49136194 | MS.gene23976:intron | 30.0% | |
| TGGGTTTAGATTCTTGATAT+TGG | + | chr1.3:49137534-49137553 | MS.gene23976:intron | 30.0% | |
| TGTAAAGAAAAAAAGTCCCA+CGG | - | chr1.3:49134402-49134421 | None:intergenic | 30.0% | |
| TGTATGTAGCTAATTAAGCT+AGG | - | chr1.3:49136474-49136493 | None:intergenic | 30.0% | |
| TTCATTGTGAATGTTTCAAC+AGG | + | chr1.3:49137859-49137878 | MS.gene23976:intron | 30.0% | |
| TTGAACTGAGAAACAACAAA+GGG | - | chr1.3:49133947-49133966 | None:intergenic | 30.0% | |
| TTGTGCTTATGATACAGTTA+AGG | + | chr1.3:49136379-49136398 | MS.gene23976:intron | 30.0% | |
| TTGTGCTTATGATACAGTTA+TGG | + | chr1.3:49136379-49136398 | MS.gene23976:intron | 30.0% | |
| TTTACATGCAATATGTCTGT+CGG | + | chr1.3:49134416-49134435 | MS.gene23976:intron | 30.0% | |
| ! | AATGTACTTTGCTATAACTC+TGG | + | chr1.3:49135090-49135109 | MS.gene23976:CDS | 30.0% |
| ! | ACTTTCAAAAGTGGTTTTCA+GGG | + | chr1.3:49133865-49133884 | MS.gene23976:CDS | 30.0% |
| ! | CACAATCCAACATTTTATTC+AGG | - | chr1.3:49136245-49136264 | None:intergenic | 30.0% |
| ! | GAACATCTTTTGTAACAATC+AGG | + | chr1.3:49136026-49136045 | MS.gene23976:intron | 30.0% |
| ! | GATATAATTAAGTTGCATGG+CGG | + | chr1.3:49136805-49136824 | MS.gene23976:CDS | 30.0% |
| ! | GCTTTTCTAATAAAAACCCT+TGG | - | chr1.3:49137010-49137029 | None:intergenic | 30.0% |
| ! | GGAAGTAAATTTTCGTCAAT+TGG | + | chr1.3:49134851-49134870 | MS.gene23976:intron | 30.0% |
| ! | TTAAGCTAGGCTTTATGTTT+AGG | - | chr1.3:49136461-49136480 | None:intergenic | 30.0% |
| ! | TTGGGTTCAATTCACATTTT+GGG | + | chr1.3:49135967-49135986 | MS.gene23976:intron | 30.0% |
| !! | AGTGGTTTTTGTATTGATCA+TGG | + | chr1.3:49134830-49134849 | MS.gene23976:intron | 30.0% |
| !! | GTTAAGAGTCAAATTTTAGC+CGG | + | chr1.3:49133826-49133845 | MS.gene23976:CDS | 30.0% |
| !! | TATTTTTAAAAGTGGCCAAC+TGG | + | chr1.3:49134714-49134733 | MS.gene23976:intron | 30.0% |
| !! | TGCTTCCTTTTTAAAAGAGA+TGG | - | chr1.3:49137787-49137806 | None:intergenic | 30.0% |
| AAGTGTGATGTTATAGCAAG+TGG | + | chr1.3:49137205-49137224 | MS.gene23976:CDS | 35.0% | |
| AGAGAACAAATCATTGAAGG+TGG | - | chr1.3:49137061-49137080 | None:intergenic | 35.0% | |
| AGCCTACCAAATACCATAAA+TGG | - | chr1.3:49134770-49134789 | None:intergenic | 35.0% | |
| AGTCCTTCAAAAACATCAAC+AGG | - | chr1.3:49135467-49135486 | None:intergenic | 35.0% | |
| CGTAAGTAGCTAATTAAGCT+AGG | - | chr1.3:49136330-49136349 | None:intergenic | 35.0% | |
| CGTAGAATATATATGCAAGG+GGG | + | chr1.3:49134975-49134994 | MS.gene23976:intron | 35.0% | |
| CTTATGATACAGTTAAGGAG+TGG | + | chr1.3:49136538-49136557 | MS.gene23976:intron | 35.0% | |
| CTTGTCTGTAATACATTACC+TGG | - | chr1.3:49136876-49136895 | None:intergenic | 35.0% | |
| GACCTTGTCGAAATAATAAC+TGG | - | chr1.3:49136207-49136226 | None:intergenic | 35.0% | |
| GATGTTCTACAATATTGAGC+GGG | - | chr1.3:49136013-49136032 | None:intergenic | 35.0% | |
| GCAACGTAGCTGTTTATTAT+TGG | - | chr1.3:49135261-49135280 | None:intergenic | 35.0% | |
| GCATTAACCTGAAATTCCAA+GGG | + | chr1.3:49136991-49137010 | MS.gene23976:intron | 35.0% | |
| GCTGAATTGATGAGCAAATA+TGG | + | chr1.3:49133354-49133373 | MS.gene23976:CDS | 35.0% | |
| GTTATTATTGTGTGGAGTAC+AGG | - | chr1.3:49136081-49136100 | None:intergenic | 35.0% | |
| TACAAACTGGTGTGTGATAT+AGG | - | chr1.3:49136961-49136980 | None:intergenic | 35.0% | |
| TACTGACATAGGAAACTTAC+CGG | - | chr1.3:49135133-49135152 | None:intergenic | 35.0% | |
| TACTTCCGTTAGATTCTAAG+TGG | + | chr1.3:49134812-49134831 | MS.gene23976:intron | 35.0% | |
| TCAGGGAAAAATTGTTAGCA+AGG | + | chr1.3:49134194-49134213 | MS.gene23976:CDS | 35.0% | |
| TGAATAAACGAATCTCGAGA+GGG | - | chr1.3:49133225-49133244 | None:intergenic | 35.0% | |
| TGAATGTTTCAACAGGAAAG+TGG | + | chr1.3:49137866-49137885 | MS.gene23976:intron | 35.0% | |
| TTAAAATTCACGGTAGCTCA+CGG | - | chr1.3:49133670-49133689 | None:intergenic | 35.0% | |
| TTGGATAACAAATGTCCAGT+TGG | - | chr1.3:49134732-49134751 | None:intergenic | 35.0% | |
| TTTCAGCAAACATCAAGTGA+TGG | - | chr1.3:49133497-49133516 | None:intergenic | 35.0% | |
| ! | ACTCTGATGCTTTTGATATC+TGG | + | chr1.3:49136507-49136526 | MS.gene23976:intron | 35.0% |
| ! | AGACAAGATTGCTCTCATTT+TGG | + | chr1.3:49136889-49136908 | MS.gene23976:intron | 35.0% |
| ! | AGCACTTTAAGAATTGCTCA+TGG | + | chr1.3:49134882-49134901 | MS.gene23976:intron | 35.0% |
| ! | ATGCATTCCTTCTTTCTAGT+AGG | + | chr1.3:49135439-49135458 | MS.gene23976:intron | 35.0% |
| ! | ATTGGGTTAGATGGAGAAAT+TGG | + | chr1.3:49136742-49136761 | MS.gene23976:CDS | 35.0% |
| ! | GACTTTCAAAAGTGGTTTTC+AGG | + | chr1.3:49133864-49133883 | MS.gene23976:CDS | 35.0% |
| ! | GTTGGGTTCAATTCACATTT+TGG | + | chr1.3:49135966-49135985 | MS.gene23976:intron | 35.0% |
| ! | TCAAGTGATGGTGTGAATTA+TGG | - | chr1.3:49133485-49133504 | None:intergenic | 35.0% |
| ! | TGAGCTACCGTGAATTTTAA+AGG | + | chr1.3:49133670-49133689 | MS.gene23976:intron | 35.0% |
| ! | TGATTTCTATCAGCCACTTT+AGG | - | chr1.3:49135530-49135549 | None:intergenic | 35.0% |
| ! | TGTCTGGAAATTTTTCTGCA+AGG | - | chr1.3:49135356-49135375 | None:intergenic | 35.0% |
| ! | TTGCTAACAATTTTTCCCTG+AGG | - | chr1.3:49134195-49134214 | None:intergenic | 35.0% |
| ! | TTTTCTGACTTCTTCAACTG+AGG | - | chr1.3:49133409-49133428 | None:intergenic | 35.0% |
| !! | AAACGGCGTCAATTTTGTTT+TGG | - | chr1.3:49137279-49137298 | None:intergenic | 35.0% |
| !! | ATACATTACCTGGTTTTCAG+AGG | - | chr1.3:49136866-49136885 | None:intergenic | 35.0% |
| !! | ATTTTGGTGAACATCTTTGG+TGG | + | chr1.3:49137175-49137194 | MS.gene23976:CDS | 35.0% |
| !! | GTACCTGTTGATGTTTTTGA+AGG | + | chr1.3:49135461-49135480 | MS.gene23976:CDS | 35.0% |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | - | chr1.3:49136317-49136336 | None:intergenic | 35.0% |
| !! | TTTAGGAGTGCTTATGAAAC+AGG | - | chr1.3:49136444-49136463 | None:intergenic | 35.0% |
| !!! | ATTTTTAAAGCACTGGGGTT+GGG | + | chr1.3:49137619-49137638 | MS.gene23976:intron | 35.0% |
| !!! | TAACTTTTTTCTGGATCAGG+TGG | + | chr1.3:49136693-49136712 | MS.gene23976:intron | 35.0% |
| !!! | TATTTTTAAAGCACTGGGGT+TGG | + | chr1.3:49137618-49137637 | MS.gene23976:intron | 35.0% |
| !!! | TTTTTTCAGGGAAGATGCTT+GGG | + | chr1.3:49134142-49134161 | MS.gene23976:intron | 35.0% |
| AAAGAAAAAAAGTCCCACGG+TGG | - | chr1.3:49134399-49134418 | None:intergenic | 40.0% | |
| AACTGGCAAACCGATACAAA+TGG | + | chr1.3:49134657-49134676 | MS.gene23976:intron | 40.0% | |
| AACTGGGATTATTGTGCAGT+TGG | + | chr1.3:49133801-49133820 | MS.gene23976:intron | 40.0% | |
| AAGAAAAAAAGTCCCACGGT+GGG | - | chr1.3:49134398-49134417 | None:intergenic | 40.0% | |
| AATAGTGAATGCTGCAAAGC+AGG | + | chr1.3:49137228-49137247 | MS.gene23976:CDS | 40.0% | |
| ACAGGTACCTACTAGAAAGA+AGG | - | chr1.3:49135449-49135468 | None:intergenic | 40.0% | |
| ACAGTGATACTGAACATGAG+TGG | + | chr1.3:49133749-49133768 | MS.gene23976:intron | 40.0% | |
| ACCCAACCCAAAAACATATC+AGG | - | chr1.3:49135953-49135972 | None:intergenic | 40.0% | |
| ACTTCGTGATACAACACAAG+AGG | + | chr1.3:49135806-49135825 | MS.gene23976:CDS | 40.0% | |
| ATGCATGTTTGGTATCACGA+CGG | + | chr1.3:49133630-49133649 | MS.gene23976:intron | 40.0% | |
| CATGAACACCAGACCAATTT+GGG | + | chr1.3:49134560-49134579 | MS.gene23976:intron | 40.0% | |
| CCAGTAATAGTTCGTCTTGA+AGG | + | chr1.3:49137692-49137711 | MS.gene23976:CDS | 40.0% | |
| CCCAACCCAAAAACATATCA+GGG | - | chr1.3:49135952-49135971 | None:intergenic | 40.0% | |
| CCTTCAAGACGAACTATTAC+TGG | - | chr1.3:49137695-49137714 | None:intergenic | 40.0% | |
| CGTATAAGACAGGATGAGAT+GGG | - | chr1.3:49136290-49136309 | None:intergenic | 40.0% | |
| CTAGAAAGAAGGAATGCATC+AGG | - | chr1.3:49135438-49135457 | None:intergenic | 40.0% | |
| CTAGTGAGTAGCAACAACTA+AGG | - | chr1.3:49137035-49137054 | None:intergenic | 40.0% | |
| CTCATGTTCAGTATCACTGT+CGG | - | chr1.3:49133749-49133768 | None:intergenic | 40.0% | |
| GAGTGAAGTGAGGTTCTATA+TGG | + | chr1.3:49136401-49136420 | MS.gene23976:intron | 40.0% | |
| GCATTTAACTATACCTCTCG+AGG | - | chr1.3:49135834-49135853 | None:intergenic | 40.0% | |
| GCCCAGTTATTATTTCGACA+AGG | + | chr1.3:49136202-49136221 | MS.gene23976:intron | 40.0% | |
| GGCAGAGAACAAATCATTGA+AGG | - | chr1.3:49137064-49137083 | None:intergenic | 40.0% | |
| GGCATTAACCTGAAATTCCA+AGG | + | chr1.3:49136990-49137009 | MS.gene23976:intron | 40.0% | |
| GTCATTACAACTTGAGTCCA+GGG | + | chr1.3:49135913-49135932 | MS.gene23976:intron | 40.0% | |
| GTGAATAAACGAATCTCGAG+AGG | - | chr1.3:49133226-49133245 | None:intergenic | 40.0% | |
| GTTTCAACAGGAAAGTGGTA+TGG | + | chr1.3:49137871-49137890 | MS.gene23976:intron | 40.0% | |
| TACAGTTATGGAGTGAAGTG+AGG | + | chr1.3:49136391-49136410 | MS.gene23976:intron | 40.0% | |
| TACCAGCTATATCTTCAACC+TGG | - | chr1.3:49133915-49133934 | None:intergenic | 40.0% | |
| TACTGATGAAGATGCTGCAA+AGG | + | chr1.3:49135487-49135506 | MS.gene23976:CDS | 40.0% | |
| TCATGAACACCAGACCAATT+TGG | + | chr1.3:49134559-49134578 | MS.gene23976:intron | 40.0% | |
| TCATTACAACTTGAGTCCAG+GGG | + | chr1.3:49135914-49135933 | MS.gene23976:intron | 40.0% | |
| TCTTTCACAGATCAATCCCA+TGG | + | chr1.3:49135695-49135714 | MS.gene23976:intron | 40.0% | |
| TGTCATTACAACTTGAGTCC+AGG | + | chr1.3:49135912-49135931 | MS.gene23976:intron | 40.0% | |
| ! | AAGGCACCAATGTTGATCAA+GGG | + | chr1.3:49137711-49137730 | MS.gene23976:CDS | 40.0% |
| ! | GCTTTTCCCTTGATCAACAT+TGG | - | chr1.3:49137720-49137739 | None:intergenic | 40.0% |
| ! | GGACTCAAGTTGTAATGACA+GGG | - | chr1.3:49135912-49135931 | None:intergenic | 40.0% |
| ! | TATCTCTTTCTGGCGATATG+CGG | - | chr1.3:49135781-49135800 | None:intergenic | 40.0% |
| ! | TCAAGTTGTAATGACAGGGT+GGG | - | chr1.3:49135908-49135927 | None:intergenic | 40.0% |
| ! | TCCAACGATGCCATTTGTAT+CGG | - | chr1.3:49134670-49134689 | None:intergenic | 40.0% |
| ! | TGACAAAGTGAAGGCGATTT+TGG | + | chr1.3:49137159-49137178 | MS.gene23976:CDS | 40.0% |
| ! | TGATTCTGACTGCACTCTTT+TGG | + | chr1.3:49135589-49135608 | MS.gene23976:CDS | 40.0% |
| ! | TGGACTCAAGTTGTAATGAC+AGG | - | chr1.3:49135913-49135932 | None:intergenic | 40.0% |
| ! | TTTAGGAGTGCGTATAAGAC+AGG | - | chr1.3:49136300-49136319 | None:intergenic | 40.0% |
| !! | AAGAGTCAAATTTTAGCCGG+TGG | + | chr1.3:49133829-49133848 | MS.gene23976:CDS | 40.0% |
| !! | ACACTGTTGCTTTCGATATC+TGG | + | chr1.3:49136353-49136372 | MS.gene23976:intron | 40.0% |
| !! | ATGGATTACCTCGTTTTGAC+CGG | - | chr1.3:49133451-49133470 | None:intergenic | 40.0% |
| !! | GCGATTTTGGTGAACATCTT+TGG | + | chr1.3:49137172-49137191 | MS.gene23976:CDS | 40.0% |
| !! | TCAAGGGAAAAGCATTCTGA+AGG | + | chr1.3:49137727-49137746 | MS.gene23976:CDS | 40.0% |
| !! | TGCAAAGGTTGTTGATGGTT+TGG | + | chr1.3:49135502-49135521 | MS.gene23976:CDS | 40.0% |
| !! | TTCAAAAGTGGTTTTCAGGG+AGG | + | chr1.3:49133868-49133887 | MS.gene23976:CDS | 40.0% |
| !!! | ATTTTGACTGTGATGAGGAG+TGG | + | chr1.3:49133775-49133794 | MS.gene23976:intron | 40.0% |
| !!! | CCCTGATATGTTTTTGGGTT+GGG | + | chr1.3:49135949-49135968 | MS.gene23976:intron | 40.0% |
| !!! | GGAGAATTTTGACTGTGATG+AGG | + | chr1.3:49133770-49133789 | MS.gene23976:intron | 40.0% |
| !!! | GTTTTTTCAGGGAAGATGCT+TGG | + | chr1.3:49134141-49134160 | MS.gene23976:intron | 40.0% |
| AACCATCCAGCACTTGAAAC+TGG | + | chr1.3:49134640-49134659 | MS.gene23976:intron | 45.0% | |
| AACCGCTGATGACAAAGTGA+AGG | + | chr1.3:49137150-49137169 | MS.gene23976:CDS | 45.0% | |
| AACTGGGCCAACCCAATATT+TGG | - | chr1.3:49136190-49136209 | None:intergenic | 45.0% | |
| ACAAAACAGTCAGGTCCTCA+GGG | + | chr1.3:49134177-49134196 | MS.gene23976:CDS | 45.0% | |
| ACAATGGCTCAATGTGACTC+TGG | + | chr1.3:49133719-49133738 | MS.gene23976:intron | 45.0% | |
| ACCACCGACATCCAGAAAAT+TGG | - | chr1.3:49136839-49136858 | None:intergenic | 45.0% | |
| ACCCAAAAACATATCAGGGC+TGG | - | chr1.3:49135948-49135967 | None:intergenic | 45.0% | |
| ACCGATACAAATGGCATCGT+TGG | + | chr1.3:49134666-49134685 | MS.gene23976:intron | 45.0% | |
| AGATGGAGAAATTGGCTGCA+TGG | + | chr1.3:49136750-49136769 | MS.gene23976:CDS | 45.0% | |
| ATGCAATATGTCTGTCGGAG+AGG | + | chr1.3:49134421-49134440 | MS.gene23976:intron | 45.0% | |
| CACCAGTTTGTAGTCTGCTT+TGG | + | chr1.3:49136969-49136988 | MS.gene23976:intron | 45.0% | |
| CTGAAATCCAACGCCCAAAT+TGG | - | chr1.3:49134538-49134557 | None:intergenic | 45.0% | |
| GAAATTGGCTGCATGGTGAA+TGG | + | chr1.3:49136757-49136776 | MS.gene23976:CDS | 45.0% | |
| GATACTCGTGGATGTTGAGA+CGG | - | chr1.3:49133198-49133217 | None:intergenic | 45.0% | |
| GATGCTGCAAAGGTTGTTGA+TGG | + | chr1.3:49135497-49135516 | MS.gene23976:CDS | 45.0% | |
| GCACATTGTTAAGACTGACC+AGG | + | chr1.3:49133894-49133913 | MS.gene23976:CDS | 45.0% | |
| GCGTATAAGACAGGATGAGA+TGG | - | chr1.3:49136291-49136310 | None:intergenic | 45.0% | |
| GGATTGGGGACTTTCAAAAG+TGG | + | chr1.3:49133856-49133875 | MS.gene23976:CDS | 45.0% | |
| TACAAAACAGTCAGGTCCTC+AGG | + | chr1.3:49134176-49134195 | MS.gene23976:CDS | 45.0% | |
| TACAAATGGCATCGTTGGAC+TGG | + | chr1.3:49134671-49134690 | MS.gene23976:intron | 45.0% | |
| TACAGTTAAGGAGTGGAGTG+AGG | + | chr1.3:49136545-49136564 | MS.gene23976:intron | 45.0% | |
| TAGCATCAGCAGCTACTAGT+TGG | - | chr1.3:49135737-49135756 | None:intergenic | 45.0% | |
| TATGGAGTTAACGTTCCCAG+AGG | + | chr1.3:49133372-49133391 | MS.gene23976:CDS | 45.0% | |
| TCTCAACATCCACGAGTATC+AGG | + | chr1.3:49133198-49133217 | MS.gene23976:CDS | 45.0% | |
| TGATGAGGAGTGGTGTAACT+GGG | + | chr1.3:49133785-49133804 | MS.gene23976:intron | 45.0% | |
| TGCATGTTTGGTATCACGAC+GGG | + | chr1.3:49133631-49133650 | MS.gene23976:intron | 45.0% | |
| TGCCAAAGCAGACTACAAAC+TGG | - | chr1.3:49136974-49136993 | None:intergenic | 45.0% | |
| TGGGATTATTGTGCAGTTGG+TGG | + | chr1.3:49133804-49133823 | MS.gene23976:intron | 45.0% | |
| TTCACAGATCAATCCCATGG+CGG | + | chr1.3:49135698-49135717 | MS.gene23976:intron | 45.0% | |
| TTCTGCAAGGTCTTCAATGC+TGG | - | chr1.3:49135343-49135362 | None:intergenic | 45.0% | |
| ! | AGCCAGCCCTGATATGTTTT+TGG | + | chr1.3:49135943-49135962 | MS.gene23976:intron | 45.0% |
| ! | CCTGCCAATTTTCTGGATGT+CGG | + | chr1.3:49136832-49136851 | MS.gene23976:CDS | 45.0% |
| ! | CTCAAGTTGTAATGACAGGG+TGG | - | chr1.3:49135909-49135928 | None:intergenic | 45.0% |
| ! | GACCAGGTTGAAGATATAGC+TGG | + | chr1.3:49133910-49133929 | MS.gene23976:CDS | 45.0% |
| ! | GCCAGCCCTGATATGTTTTT+GGG | + | chr1.3:49135944-49135963 | MS.gene23976:intron | 45.0% |
| ! | GTAATGACAGGGTGGGTTTA+GGG | - | chr1.3:49135901-49135920 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCTCCTAAAG+TGG | + | chr1.3:49135514-49135533 | MS.gene23976:CDS | 45.0% |
| ! | TGTAATGACAGGGTGGGTTT+AGG | - | chr1.3:49135902-49135921 | None:intergenic | 45.0% |
| ! | TTTTTCTGGACTGATCCTGC+TGG | + | chr1.3:49134487-49134506 | MS.gene23976:intron | 45.0% |
| !! | CATTTTGGGTAAGCCGAAGT+CGG | + | chr1.3:49135981-49136000 | MS.gene23976:intron | 45.0% |
| !! | GAAGGCACCAATGTTGATCA+AGG | + | chr1.3:49137710-49137729 | MS.gene23976:CDS | 45.0% |
| !! | GAGTGGAGTGAGGTTCTAAA+TGG | + | chr1.3:49136555-49136574 | MS.gene23976:intron | 45.0% |
| !! | TGGATTACCTCGTTTTGACC+GGG | - | chr1.3:49133450-49133469 | None:intergenic | 45.0% |
| !!! | GCCCTGATATGTTTTTGGGT+TGG | + | chr1.3:49135948-49135967 | MS.gene23976:intron | 45.0% |
| !!! | TTTATTTTTATTTTTAAAAG+TGG | + | chr1.3:49134706-49134725 | MS.gene23976:intron | 5.0% |
| AACACAAGAGGATCCTCGAG+AGG | + | chr1.3:49135818-49135837 | MS.gene23976:CDS | 50.0% | |
| AACTGGCCACCAGACCAATT+TGG | + | chr1.3:49134521-49134540 | MS.gene23976:intron | 50.0% | |
| ACCGGGGAATGCATCTTTGA+TGG | - | chr1.3:49133433-49133452 | None:intergenic | 50.0% | |
| ACTCTGGATCGTAAGACTGC+TGG | + | chr1.3:49135106-49135125 | MS.gene23976:CDS | 50.0% | |
| ACTGGCCACCAGACCAATTT+GGG | + | chr1.3:49134522-49134541 | MS.gene23976:intron | 50.0% | |
| AGTTTACCAGTCCAACCAGC+AGG | - | chr1.3:49134505-49134524 | None:intergenic | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | - | chr1.3:49134533-49134552 | None:intergenic | 50.0% | |
| CCGACATCCAGAAAATTGGC+AGG | - | chr1.3:49136835-49136854 | None:intergenic | 50.0% | |
| CGCCTTCACTTTGTCATCAG+CGG | - | chr1.3:49137155-49137174 | None:intergenic | 50.0% | |
| GCCATCAAAGATGCATTCCC+CGG | + | chr1.3:49133429-49133448 | MS.gene23976:CDS | 50.0% | |
| GTGATGAGGAGTGGTGTAAC+TGG | + | chr1.3:49133784-49133803 | MS.gene23976:intron | 50.0% | |
| TTATCAGCTGTCTCCGCCAT+GGG | - | chr1.3:49135714-49135733 | None:intergenic | 50.0% | |
| ! | AGGGTTAGCAATGGCCACAA+TGG | + | chr1.3:49136783-49136802 | MS.gene23976:CDS | 50.0% |
| ! | CGGTACTCCTGCCAATTTTC+TGG | + | chr1.3:49136825-49136844 | MS.gene23976:CDS | 50.0% |
| ! | GAATGGAGCAGGGTTAGCAA+TGG | + | chr1.3:49136774-49136793 | MS.gene23976:CDS | 50.0% |
| ! | GCCAATTTTCTGGATGTCGG+TGG | + | chr1.3:49136835-49136854 | MS.gene23976:CDS | 50.0% |
| ! | GGTTTGCCAGTTTCAAGTGC+TGG | - | chr1.3:49134649-49134668 | None:intergenic | 50.0% |
| !! | CAAATTTTAGCCGGTGGACG+AGG | + | chr1.3:49133835-49133854 | MS.gene23976:CDS | 50.0% |
| !! | CTGTTGATTCTGCCATGTGC+CGG | - | chr1.3:49133170-49133189 | None:intergenic | 50.0% |
| !! | GGATTACCTCGTTTTGACCG+GGG | - | chr1.3:49133449-49133468 | None:intergenic | 50.0% |
| !! | TGCCAGTTTCAAGTGCTGGA+TGG | - | chr1.3:49134645-49134664 | None:intergenic | 50.0% |
| !! | TGCTGGTTGGACTGGTAAAC+TGG | + | chr1.3:49134504-49134523 | MS.gene23976:intron | 50.0% |
| ACTCGTGGATGTTGAGACGG+CGG | - | chr1.3:49133195-49133214 | None:intergenic | 55.0% | |
| CACCAGACCAATTTGGGCGT+TGG | + | chr1.3:49134528-49134547 | MS.gene23976:intron | 55.0% | |
| GCTGCATGGTGAATGGAGCA+GGG | + | chr1.3:49136764-49136783 | MS.gene23976:CDS | 55.0% | |
| GGATCGTAAGACTGCTGGTC+CGG | + | chr1.3:49135111-49135130 | MS.gene23976:CDS | 55.0% | |
| GTTATCAGCTGTCTCCGCCA+TGG | - | chr1.3:49135715-49135734 | None:intergenic | 55.0% | |
| TCTGGACTGATCCTGCTGGT+TGG | + | chr1.3:49134491-49134510 | MS.gene23976:intron | 55.0% | |
| TGCATTCCCCGGTCAAAACG+AGG | + | chr1.3:49133440-49133459 | MS.gene23976:CDS | 55.0% | |
| TTAGCCGGTGGACGAGGATT+GGG | + | chr1.3:49133841-49133860 | MS.gene23976:CDS | 55.0% | |
| TTTAGCCGGTGGACGAGGAT+TGG | + | chr1.3:49133840-49133859 | MS.gene23976:CDS | 55.0% | |
| ! | ACTGATCCTGCTGGTTGGAC+TGG | + | chr1.3:49134496-49134515 | MS.gene23976:intron | 55.0% |
| ! | CAACGCCCAAATTGGTCTGG+TGG | - | chr1.3:49134530-49134549 | None:intergenic | 55.0% |
| ! | TAACGTTCCCAGAGGCGTAG+CGG | + | chr1.3:49133380-49133399 | MS.gene23976:CDS | 55.0% |
| !! | TGGTGCTGCCTCTGAAAACC+AGG | + | chr1.3:49136855-49136874 | MS.gene23976:CDS | 55.0% |
| ACACCCTTTGGATCCCACCG+TGG | + | chr1.3:49134382-49134401 | MS.gene23976:intron | 60.0% | |
| AGTCCCACGGTGGGATCCAA+AGG | - | chr1.3:49134389-49134408 | None:intergenic | 60.0% | |
| AGTCCCCAATCCTCGTCCAC+CGG | - | chr1.3:49133848-49133867 | None:intergenic | 60.0% | |
| CACCCTTTGGATCCCACCGT+GGG | + | chr1.3:49134383-49134402 | MS.gene23976:intron | 60.0% | |
| CGAGAGGGACCTGATACTCG+TGG | - | chr1.3:49133210-49133229 | None:intergenic | 60.0% | |
| GAGGAAACCGCTACGCCTCT+GGG | - | chr1.3:49133390-49133409 | None:intergenic | 60.0% | |
| GGATCAGGTGGCTGCTGCAA+AGG | + | chr1.3:49136705-49136724 | MS.gene23976:intron | 60.0% | |
| GGCTGCATGGTGAATGGAGC+AGG | + | chr1.3:49136763-49136782 | MS.gene23976:CDS | 60.0% | |
| GTCCCACGGTGGGATCCAAA+GGG | - | chr1.3:49134388-49134407 | None:intergenic | 60.0% | |
| TAGCCGGTGGACGAGGATTG+GGG | + | chr1.3:49133842-49133861 | MS.gene23976:CDS | 60.0% | |
| TGAGGAAACCGCTACGCCTC+TGG | - | chr1.3:49133391-49133410 | None:intergenic | 60.0% | |
| ! | ATTCTGCCATGTGCCGGCGA+CGG | - | chr1.3:49133164-49133183 | None:intergenic | 60.0% |
| !! | AGGGCTGGCTAGAAAACCCC+TGG | - | chr1.3:49135933-49135952 | None:intergenic | 60.0% |
| !! | GAGCGGGATAGTGCCGACTT+CGG | - | chr1.3:49135997-49136016 | None:intergenic | 60.0% |
| TCTCGCTCTCTCTCCGTCGC+CGG | + | chr1.3:49133148-49133167 | MS.gene23976:CDS | 65.0% | |
| CTCTCTCCGTCGCCGGCACA+TGG | + | chr1.3:49133155-49133174 | MS.gene23976:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49133118 | 49137955 | 49133118 | ID=MS.gene23976 |
| chr1.3 | mRNA | 49133118 | 49137955 | 49133118 | ID=MS.gene23976.t1;Parent=MS.gene23976 |
| chr1.3 | exon | 49133118 | 49133219 | 49133118 | ID=MS.gene23976.t1.exon1;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49133118 | 49133219 | 49133118 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49133351 | 49133461 | 49133351 | ID=MS.gene23976.t1.exon2;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49133351 | 49133461 | 49133351 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49133820 | 49133931 | 49133820 | ID=MS.gene23976.t1.exon3;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49133820 | 49133931 | 49133820 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49134151 | 49134215 | 49134151 | ID=MS.gene23976.t1.exon4;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49134151 | 49134215 | 49134151 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49135055 | 49135132 | 49135055 | ID=MS.gene23976.t1.exon5;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49135055 | 49135132 | 49135055 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49135312 | 49135386 | 49135312 | ID=MS.gene23976.t1.exon6;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49135312 | 49135386 | 49135312 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49135461 | 49135613 | 49135461 | ID=MS.gene23976.t1.exon7;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49135461 | 49135613 | 49135461 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49135705 | 49135839 | 49135705 | ID=MS.gene23976.t1.exon8;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49135705 | 49135839 | 49135705 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49136712 | 49136876 | 49136712 | ID=MS.gene23976.t1.exon9;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49136712 | 49136876 | 49136712 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49137127 | 49137249 | 49137127 | ID=MS.gene23976.t1.exon10;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49137127 | 49137249 | 49137127 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49137677 | 49137748 | 49137677 | ID=MS.gene23976.t1.exon11;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49137677 | 49137748 | 49137677 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| chr1.3 | exon | 49137881 | 49137955 | 49137881 | ID=MS.gene23976.t1.exon12;Parent=MS.gene23976.t1 |
| chr1.3 | CDS | 49137881 | 49137955 | 49137881 | ID=cds.MS.gene23976.t1;Parent=MS.gene23976.t1 |
| Gene Sequence |
| Protein sequence |
