Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056665.t1 | XP_013456370.1 | 95 | 757 | 37 | 1 | 1 | 756 | 1 | 757 | 0.00E+00 | 1307.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056665.t1 | P27612 | 35.3 | 795 | 433 | 19 | 8 | 738 | 8 | 785 | 3.3e-77 | 291.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056665.t1 | A0A072UM09 | 95.0 | 757 | 37 | 1 | 1 | 756 | 1 | 757 | 0.0e+00 | 1307.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056097 | MS.gene056665 | 0.806986 | 6.30E-50 | -1.69E-46 |
MS.gene056665 | MS.gene059007 | 0.812174 | 4.84E-51 | -1.69E-46 |
MS.gene056665 | MS.gene23976 | 0.805779 | 1.13E-49 | -1.69E-46 |
MS.gene056665 | MS.gene24205 | 0.801352 | 9.38E-49 | -1.69E-46 |
MS.gene056665 | MS.gene27287 | 0.817303 | 3.54E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene056665 | MS.gene007767 | PPI |
MS.gene94627 | MS.gene056665 | PPI |
MS.gene056665 | MS.gene049739 | PPI |
MS.gene35337 | MS.gene056665 | PPI |
MS.gene056665 | MS.gene03728 | PPI |
MS.gene056665 | MS.gene073119 | PPI |
MS.gene07066 | MS.gene056665 | PPI |
MS.gene22513 | MS.gene056665 | PPI |
MS.gene056665 | MS.gene27391 | PPI |
MS.gene056665 | MS.gene28820 | PPI |
MS.gene056665 | MS.gene072689 | PPI |
MS.gene056665 | MS.gene069676 | PPI |
MS.gene041682 | MS.gene056665 | PPI |
MS.gene056665 | MS.gene065924 | PPI |
MS.gene056665 | MS.gene09394 | PPI |
MS.gene056665 | MS.gene91510 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056665.t1 | MTR_4g069090 | 94.980 | 757 | 37 | 1 | 1 | 756 | 1 | 757 | 0.0 | 1477 |
MS.gene056665.t1 | MTR_4g119620 | 30.350 | 257 | 155 | 13 | 13 | 253 | 73 | 321 | 3.27e-20 | 92.8 |
MS.gene056665.t1 | MTR_4g119620 | 32.787 | 183 | 104 | 8 | 128 | 291 | 7 | 189 | 7.39e-13 | 70.9 |
MS.gene056665.t1 | MTR_1g072140 | 29.457 | 258 | 156 | 13 | 13 | 253 | 64 | 312 | 1.83e-14 | 75.5 |
MS.gene056665.t1 | MTR_2g012630 | 28.889 | 180 | 118 | 7 | 84 | 253 | 32 | 211 | 2.45e-14 | 77.8 |
MS.gene056665.t1 | MTR_8g106790 | 27.673 | 318 | 164 | 15 | 10 | 308 | 7 | 277 | 2.99e-14 | 75.1 |
MS.gene056665.t1 | MTR_2g012630 | 28.889 | 180 | 118 | 7 | 84 | 253 | 32 | 211 | 3.00e-14 | 77.4 |
MS.gene056665.t1 | MTR_6g004040 | 28.177 | 181 | 120 | 7 | 83 | 253 | 32 | 212 | 6.94e-14 | 75.9 |
MS.gene056665.t1 | MTR_5g016370 | 25.556 | 270 | 173 | 11 | 34 | 283 | 321 | 582 | 7.36e-14 | 75.5 |
MS.gene056665.t1 | MTR_4g105700 | 27.273 | 264 | 164 | 10 | 14 | 255 | 398 | 655 | 2.18e-13 | 74.3 |
MS.gene056665.t1 | MTR_2g436510 | 24.176 | 273 | 182 | 10 | 10 | 265 | 204 | 468 | 3.53e-13 | 73.2 |
MS.gene056665.t1 | MTR_2g436510 | 25.890 | 309 | 195 | 15 | 5 | 291 | 160 | 456 | 2.63e-11 | 67.0 |
MS.gene056665.t1 | MTR_5g016350 | 25.556 | 270 | 173 | 10 | 34 | 283 | 309 | 570 | 3.74e-13 | 73.2 |
MS.gene056665.t1 | MTR_8g104010 | 27.778 | 234 | 153 | 8 | 30 | 255 | 880 | 1105 | 5.28e-13 | 73.6 |
MS.gene056665.t1 | MTR_8g104010 | 23.944 | 284 | 176 | 8 | 102 | 361 | 849 | 1116 | 2.02e-11 | 68.2 |
MS.gene056665.t1 | MTR_5g016350 | 25.455 | 275 | 177 | 10 | 29 | 283 | 240 | 506 | 5.41e-13 | 72.8 |
MS.gene056665.t1 | MTR_8g104010 | 27.778 | 234 | 153 | 8 | 30 | 255 | 517 | 742 | 1.44e-12 | 71.6 |
MS.gene056665.t1 | MTR_8g104010 | 24.028 | 283 | 175 | 8 | 103 | 361 | 487 | 753 | 4.33e-11 | 67.0 |
MS.gene056665.t1 | MTR_8g104010 | 27.778 | 234 | 153 | 8 | 30 | 255 | 600 | 825 | 1.79e-12 | 71.6 |
MS.gene056665.t1 | MTR_8g104010 | 24.028 | 283 | 175 | 8 | 103 | 361 | 570 | 836 | 4.51e-11 | 67.0 |
MS.gene056665.t1 | MTR_5g022690 | 32.812 | 192 | 109 | 8 | 34 | 214 | 294 | 476 | 1.91e-12 | 70.9 |
MS.gene056665.t1 | MTR_5g022690 | 27.848 | 237 | 152 | 11 | 31 | 256 | 250 | 478 | 1.85e-11 | 67.8 |
MS.gene056665.t1 | MTR_1g011610 | 25.424 | 236 | 149 | 8 | 34 | 254 | 670 | 893 | 1.94e-12 | 71.2 |
MS.gene056665.t1 | MTR_1g011610 | 25.424 | 236 | 149 | 8 | 34 | 254 | 679 | 902 | 1.99e-12 | 71.2 |
MS.gene056665.t1 | MTR_8g092620 | 25.256 | 293 | 195 | 12 | 14 | 291 | 14 | 297 | 2.18e-12 | 68.9 |
MS.gene056665.t1 | MTR_2g102277 | 29.688 | 192 | 116 | 9 | 34 | 213 | 72 | 256 | 5.11e-12 | 70.1 |
MS.gene056665.t1 | MTR_2g102277 | 29.688 | 192 | 116 | 9 | 34 | 213 | 72 | 256 | 5.87e-12 | 69.7 |
MS.gene056665.t1 | MTR_3g107910 | 25.652 | 230 | 152 | 7 | 34 | 254 | 685 | 904 | 9.40e-12 | 69.3 |
MS.gene056665.t1 | MTR_3g107910 | 25.652 | 230 | 152 | 7 | 34 | 254 | 678 | 897 | 1.08e-11 | 68.9 |
MS.gene056665.t1 | MTR_2g101410 | 29.279 | 222 | 119 | 14 | 109 | 293 | 187 | 407 | 1.10e-11 | 68.2 |
MS.gene056665.t1 | MTR_4g011950 | 29.167 | 192 | 117 | 9 | 34 | 213 | 72 | 256 | 1.47e-11 | 68.6 |
MS.gene056665.t1 | MTR_8g092620 | 25.896 | 251 | 166 | 9 | 14 | 253 | 21 | 262 | 3.07e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056665.t1 | AT3G18860 | 66.974 | 760 | 244 | 4 | 1 | 755 | 3 | 760 | 0.0 | 1083 |
MS.gene056665.t1 | AT3G18860 | 66.974 | 760 | 244 | 4 | 1 | 755 | 3 | 760 | 0.0 | 1082 |
MS.gene056665.t1 | AT3G49660 | 30.196 | 255 | 156 | 12 | 13 | 253 | 66 | 312 | 9.06e-24 | 103 |
MS.gene056665.t1 | AT3G49660 | 27.451 | 306 | 201 | 12 | 5 | 292 | 11 | 313 | 5.67e-14 | 74.3 |
MS.gene056665.t1 | AT4G02730 | 28.409 | 264 | 166 | 12 | 7 | 254 | 74 | 330 | 8.35e-18 | 85.9 |
MS.gene056665.t1 | AT1G49040 | 30.045 | 223 | 143 | 9 | 81 | 291 | 868 | 1089 | 1.99e-15 | 81.3 |
MS.gene056665.t1 | AT1G49040 | 28.980 | 245 | 154 | 10 | 30 | 262 | 866 | 1102 | 8.57e-15 | 79.3 |
MS.gene056665.t1 | AT1G49040 | 28.148 | 270 | 161 | 11 | 4 | 253 | 925 | 1181 | 1.27e-14 | 78.6 |
MS.gene056665.t1 | AT4G32551 | 27.948 | 229 | 152 | 6 | 34 | 254 | 746 | 969 | 7.78e-15 | 79.3 |
MS.gene056665.t1 | AT4G32551 | 27.948 | 229 | 152 | 6 | 34 | 254 | 708 | 931 | 9.04e-15 | 79.0 |
MS.gene056665.t1 | AT2G41500 | 29.004 | 231 | 145 | 11 | 34 | 253 | 313 | 535 | 4.29e-14 | 76.3 |
MS.gene056665.t1 | AT2G41500 | 29.004 | 231 | 145 | 11 | 34 | 253 | 313 | 535 | 4.29e-14 | 76.3 |
MS.gene056665.t1 | AT5G23430 | 28.729 | 181 | 119 | 7 | 83 | 253 | 32 | 212 | 2.68e-13 | 74.3 |
MS.gene056665.t1 | AT5G23430 | 28.729 | 181 | 119 | 7 | 83 | 253 | 32 | 212 | 2.68e-13 | 74.3 |
MS.gene056665.t1 | AT5G23430 | 28.729 | 181 | 119 | 7 | 83 | 253 | 32 | 212 | 2.71e-13 | 74.3 |
MS.gene056665.t1 | AT1G48630 | 27.481 | 262 | 164 | 11 | 10 | 253 | 7 | 260 | 8.18e-13 | 70.9 |
MS.gene056665.t1 | AT1G24530 | 28.704 | 216 | 119 | 8 | 109 | 294 | 194 | 404 | 1.70e-12 | 70.5 |
MS.gene056665.t1 | AT3G18130 | 27.481 | 262 | 164 | 11 | 10 | 253 | 7 | 260 | 2.84e-12 | 68.9 |
MS.gene056665.t1 | AT1G52360 | 29.167 | 192 | 117 | 9 | 34 | 213 | 72 | 256 | 3.33e-12 | 70.9 |
MS.gene056665.t1 | AT1G52360 | 29.167 | 192 | 117 | 9 | 34 | 213 | 72 | 256 | 3.33e-12 | 70.9 |
MS.gene056665.t1 | AT1G52360 | 29.167 | 192 | 117 | 9 | 34 | 213 | 116 | 300 | 3.34e-12 | 70.9 |
MS.gene056665.t1 | AT1G52360 | 29.167 | 192 | 117 | 9 | 34 | 213 | 72 | 256 | 3.59e-12 | 70.5 |
MS.gene056665.t1 | AT5G52820 | 26.596 | 282 | 158 | 10 | 59 | 291 | 190 | 471 | 4.35e-12 | 69.7 |
MS.gene056665.t1 | AT1G61210 | 27.222 | 180 | 121 | 7 | 84 | 253 | 32 | 211 | 1.27e-11 | 68.9 |
MS.gene056665.t1 | AT1G18080 | 29.583 | 240 | 141 | 12 | 10 | 229 | 7 | 238 | 1.56e-11 | 67.0 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 567 | 787 | 1.63e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 567 | 787 | 1.63e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 567 | 787 | 1.63e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 567 | 787 | 1.63e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 567 | 787 | 1.63e-11 | 68.6 |
MS.gene056665.t1 | AT1G61210 | 27.222 | 180 | 121 | 7 | 84 | 253 | 32 | 211 | 1.67e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 565 | 785 | 1.69e-11 | 68.2 |
MS.gene056665.t1 | AT1G61210 | 27.222 | 180 | 121 | 7 | 84 | 253 | 32 | 211 | 1.71e-11 | 68.6 |
MS.gene056665.t1 | AT2G32700 | 23.913 | 230 | 157 | 9 | 34 | 254 | 586 | 806 | 1.80e-11 | 68.2 |
MS.gene056665.t1 | AT1G49040 | 27.746 | 173 | 102 | 5 | 103 | 253 | 836 | 1007 | 2.64e-11 | 67.8 |
MS.gene056665.t1 | AT1G79990 | 31.361 | 169 | 99 | 8 | 57 | 213 | 93 | 256 | 3.39e-11 | 67.4 |
MS.gene056665.t1 | AT1G79990 | 31.361 | 169 | 99 | 8 | 57 | 213 | 93 | 256 | 3.64e-11 | 67.4 |
MS.gene056665.t1 | AT1G11160 | 26.519 | 181 | 123 | 7 | 83 | 253 | 31 | 211 | 4.91e-11 | 67.0 |
MS.gene056665.t1 | AT5G64730 | 23.891 | 293 | 199 | 11 | 14 | 291 | 14 | 297 | 5.31e-11 | 65.1 |
MS.gene056665.t1 | AT1G11160 | 26.519 | 181 | 123 | 7 | 83 | 253 | 31 | 211 | 5.33e-11 | 67.0 |
MS.gene056665.t1 | AT1G11160 | 26.519 | 181 | 123 | 7 | 83 | 253 | 31 | 211 | 6.17e-11 | 66.6 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGGAATCGTTGGGTTTA+TGG | 0.150998 | 4.3:-36199558 | None:intergenic |
TGTTTGGGATACAAAATTTA+TGG | 0.153293 | 4.3:+36194285 | MS.gene056665:CDS |
GATACAAAATTTATGGAAAA+TGG | 0.165551 | 4.3:+36194292 | MS.gene056665:CDS |
ACTACAGTTCTCTGAGATTA+TGG | 0.176090 | 4.3:+36193483 | MS.gene056665:intron |
CCACACGGTGGTGTTGTTTC+TGG | 0.196876 | 4.3:+36191618 | MS.gene056665:CDS |
TTCAGATTCTGCAAATTTAC+TGG | 0.225599 | 4.3:-36198607 | None:intergenic |
AGCAACTAAAGCACGAAATT+TGG | 0.240275 | 4.3:-36202348 | None:intergenic |
GAGGGTTGGAGGATTGAAAT+TGG | 0.276314 | 4.3:+36194742 | MS.gene056665:CDS |
CATATGATGCTGCTGATAAA+TGG | 0.284265 | 4.3:+36196276 | MS.gene056665:CDS |
GCCTACCTGGTCGGATAATA+AGG | 0.288926 | 4.3:-36197790 | None:intergenic |
GAGAAGGTGCAGAGTCTTAA+AGG | 0.307254 | 4.3:+36191684 | MS.gene056665:CDS |
GGATACTCTTGTGTTGGTTT+GGG | 0.310737 | 4.3:+36191647 | MS.gene056665:CDS |
CGTGAAGTTCACAGCGTAAT+TGG | 0.317010 | 4.3:-36191407 | None:intergenic |
AGTGCTATTGATTGAATCTA+AGG | 0.317141 | 4.3:+36201339 | MS.gene056665:CDS |
ATACAAAATTTATGGAAAAT+GGG | 0.317845 | 4.3:+36194293 | MS.gene056665:CDS |
GATGGTGTTCAGTATGATTA+TGG | 0.317950 | 4.3:+36195181 | MS.gene056665:CDS |
TGGATACTCTTGTGTTGGTT+TGG | 0.324878 | 4.3:+36191646 | MS.gene056665:CDS |
TAGAGCATCCTGGTTGTGTT+TGG | 0.330251 | 4.3:+36194269 | MS.gene056665:CDS |
GGTCATCAATTGCAGGTTAC+TGG | 0.336331 | 4.3:+36191705 | MS.gene056665:CDS |
TTTGATACTGCTCAATTTGA+TGG | 0.343640 | 4.3:+36197735 | MS.gene056665:CDS |
TTGGAGATGGTATGCCTATC+AGG | 0.348798 | 4.3:+36195307 | MS.gene056665:CDS |
ACACCACCGTGTGGCAAATC+AGG | 0.349373 | 4.3:-36191609 | None:intergenic |
AGTAAGTGGTGAAGTGTTAA+TGG | 0.353713 | 4.3:+36193508 | MS.gene056665:CDS |
CCCACAGGAGAGCTTGTTAC+AGG | 0.356136 | 4.3:+36192759 | MS.gene056665:CDS |
ACGCATTTGGACTGTAAATC+AGG | 0.364122 | 4.3:+36194348 | MS.gene056665:CDS |
TCAGTGTTTGATGTGGATAT+TGG | 0.367485 | 4.3:+36195288 | MS.gene056665:intron |
AGATCCTACTTCAGCAATCT+TGG | 0.375918 | 4.3:-36203030 | None:intergenic |
CTGAATAAACAATTGCAGTA+TGG | 0.377369 | 4.3:-36193541 | None:intergenic |
TGAAGTGCAATAGCCCCGTC+TGG | 0.377385 | 4.3:-36198880 | None:intergenic |
AGAGGGCGATTTGATTCTTC+CGG | 0.381445 | 4.3:-36195154 | None:intergenic |
TTTGTACCTGATCGGTTGTA+TGG | 0.382114 | 4.3:-36195336 | None:intergenic |
AGAGCATCCTGGTTGTGTTT+GGG | 0.384125 | 4.3:+36194270 | MS.gene056665:CDS |
AGAATTCATGCTTCTACAAC+TGG | 0.385701 | 4.3:+36199621 | MS.gene056665:CDS |
CTACAGTTCTCTGAGATTAT+GGG | 0.388543 | 4.3:+36193484 | MS.gene056665:intron |
CCAACCACAATGATATTTCC+TGG | 0.389390 | 4.3:+36198663 | MS.gene056665:CDS |
TACTGAATATGCTATCTTCA+TGG | 0.394037 | 4.3:+36198640 | MS.gene056665:CDS |
GGAACATGGCAGAACAGAAA+TGG | 0.394356 | 4.3:+36194989 | MS.gene056665:CDS |
CTGATGGAATTGTACGCATT+TGG | 0.398577 | 4.3:+36194335 | MS.gene056665:CDS |
AAAAGCAGCAAAGGGTTCTA+AGG | 0.399602 | 4.3:+36203004 | MS.gene056665:CDS |
TTGTTTCATCTTCTATTGAT+TGG | 0.400975 | 4.3:+36191751 | MS.gene056665:CDS |
CAGTTCATACTTCAAAATAC+TGG | 0.403359 | 4.3:+36196344 | MS.gene056665:CDS |
ATTTCTTGTGTAGTACTTTG+AGG | 0.407655 | 4.3:+36192664 | MS.gene056665:intron |
GTCTTGAACAAGGTTCTTGT+AGG | 0.407719 | 4.3:+36191543 | MS.gene056665:CDS |
TTTAGTTGCTGTTGGATCAC+TGG | 0.408298 | 4.3:+36202361 | MS.gene056665:CDS |
GCATGAATTCTTAAAGAGAT+TGG | 0.411971 | 4.3:-36199609 | None:intergenic |
ATACTAGTCAACAGATTTGC+AGG | 0.427032 | 4.3:-36199575 | None:intergenic |
TCAGTTGATTCACATGCATC+AGG | 0.432496 | 4.3:+36193560 | MS.gene056665:CDS |
TGTGTAGTACTTTGAGGAGG+TGG | 0.434586 | 4.3:+36192670 | MS.gene056665:intron |
TTGAAATTGGAGGAGTTACC+AGG | 0.436590 | 4.3:+36194755 | MS.gene056665:CDS |
TTGGCTGTGATGTCTGATCT+TGG | 0.438344 | 4.3:+36193337 | MS.gene056665:CDS |
AAAGCACGAAATTTGGAATC+AGG | 0.440555 | 4.3:-36202341 | None:intergenic |
CTTTGAGGAGGTGGAGGAAT+GGG | 0.444827 | 4.3:+36192679 | MS.gene056665:CDS |
TTTAACAATGGCATCCAGTC+TGG | 0.446187 | 4.3:-36198556 | None:intergenic |
TTTCTCAATACAAGTCTAGT+AGG | 0.451806 | 4.3:+36194416 | MS.gene056665:CDS |
TTTCGTGCTTTAGTTGCTGT+TGG | 0.452911 | 4.3:+36202353 | MS.gene056665:CDS |
AAGATTGGTGAAGTTGTTGA+TGG | 0.453927 | 4.3:+36195130 | MS.gene056665:intron |
TTGTATGGCAACTTCCTGAT+AGG | 0.456527 | 4.3:-36195321 | None:intergenic |
TTCCGCGAACGTCGTCTTCG+TGG | 0.457119 | 4.3:-36191431 | None:intergenic |
GTGACAAAACGGTTAGGTTA+TGG | 0.457307 | 4.3:+36191499 | MS.gene056665:CDS |
TCAGCCAATGCTTACGTACC+AGG | 0.458333 | 4.3:+36196537 | MS.gene056665:intron |
ATTGGAGGAGTTACCAGGCT+TGG | 0.459142 | 4.3:+36194760 | MS.gene056665:CDS |
AACAGATTTGCAGGAATCGT+TGG | 0.461890 | 4.3:-36199566 | None:intergenic |
TACAGATACTGTTCGTGGCT+TGG | 0.462670 | 4.3:+36193318 | MS.gene056665:intron |
ACAGATTTGCAGGAATCGTT+GGG | 0.462737 | 4.3:-36199565 | None:intergenic |
GGTCAACCTTCTCGCACATC+TGG | 0.462896 | 4.3:+36196558 | MS.gene056665:CDS |
TATGCTAGAAAGAGGGTTGG+AGG | 0.463864 | 4.3:+36194731 | MS.gene056665:intron |
GAAGTTGTCTTTGACCGAGT+TGG | 0.465297 | 4.3:+36198527 | MS.gene056665:CDS |
GCCGTTGTCGCCGCCGCAGA+TGG | 0.466421 | 4.3:-36191457 | None:intergenic |
TGGTAATTCTTCACCCAGAC+GGG | 0.468152 | 4.3:+36198866 | MS.gene056665:CDS |
CAATTACGCTGTGAACTTCA+CGG | 0.469838 | 4.3:+36191408 | MS.gene056665:CDS |
AGCTTTATAACTGCTTGAAT+CGG | 0.476468 | 4.3:-36192735 | None:intergenic |
TCTTAAAGGTCATCAATTGC+AGG | 0.479911 | 4.3:+36191698 | MS.gene056665:CDS |
ACTGGTATTGTGGTTGATGA+TGG | 0.480401 | 4.3:+36191723 | MS.gene056665:CDS |
TTCGGTGGAATCCATGATAT+AGG | 0.482787 | 4.3:-36191585 | None:intergenic |
AACTTCATCGCGTGACAAAA+CGG | 0.488695 | 4.3:+36191488 | MS.gene056665:CDS |
TGGCATGGATACTCTTGTGT+TGG | 0.488991 | 4.3:+36191641 | MS.gene056665:CDS |
GTTGTCAGAGAGGGAGATAA+CGG | 0.489482 | 4.3:+36194952 | MS.gene056665:CDS |
TTAGGAATATGCTTGAAAGT+AGG | 0.492360 | 4.3:-36196898 | None:intergenic |
TTGATACTGCTCAATTTGAT+GGG | 0.492366 | 4.3:+36197736 | MS.gene056665:CDS |
CCGTGTGGCAAATCAGGGTT+CGG | 0.498948 | 4.3:-36191603 | None:intergenic |
GAACATGGCAGAACAGAAAT+GGG | 0.499199 | 4.3:+36194990 | MS.gene056665:CDS |
TCCTATCTGCATCTCATGAT+GGG | 0.503124 | 4.3:+36193362 | MS.gene056665:CDS |
AGCATTGCAAAAGCAGCAAA+GGG | 0.507494 | 4.3:+36202996 | MS.gene056665:CDS |
TACAAAATTTATGGAAAATG+GGG | 0.508270 | 4.3:+36194294 | MS.gene056665:CDS |
TACTTTCAAGCATATTCCTA+AGG | 0.508389 | 4.3:+36196900 | MS.gene056665:CDS |
ATCCTATCTGCATCTCATGA+TGG | 0.509522 | 4.3:+36193361 | MS.gene056665:CDS |
GAGCATTGCAAAAGCAGCAA+AGG | 0.509606 | 4.3:+36202995 | MS.gene056665:CDS |
ATCTTCAGTGTATCCAAGCC+TGG | 0.510656 | 4.3:-36194773 | None:intergenic |
TTGGTTTGGGACTTGAATAG+TGG | 0.519590 | 4.3:+36191660 | MS.gene056665:CDS |
ATTTATGCTAGAAAGAGGGT+TGG | 0.520811 | 4.3:+36194728 | MS.gene056665:intron |
ACCCATCATGAGATGCAGAT+AGG | 0.520890 | 4.3:-36193363 | None:intergenic |
TGTATAAATCAAGCTCTAGC+TGG | 0.521315 | 4.3:-36194384 | None:intergenic |
AGAGACATGGGAGGCTCACA+AGG | 0.527540 | 4.3:+36192710 | MS.gene056665:CDS |
ACCATCTGCGGCGGCGACAA+CGG | 0.529117 | 4.3:+36191456 | MS.gene056665:CDS |
GTAGTACTTTGAGGAGGTGG+AGG | 0.537286 | 4.3:+36192673 | MS.gene056665:intron |
CATCGCGTGACAAAACGGTT+AGG | 0.543736 | 4.3:+36191493 | MS.gene056665:CDS |
ACTTTGAGGAGGTGGAGGAA+TGG | 0.546137 | 4.3:+36192678 | MS.gene056665:CDS |
AAGTTGCCATACAACCGATC+AGG | 0.546615 | 4.3:+36195330 | MS.gene056665:CDS |
TGGTGTTGTTTCTGGTGGCA+TGG | 0.553218 | 4.3:+36191626 | MS.gene056665:CDS |
TGGTGAAGTTGTTGATGGAC+CGG | 0.556485 | 4.3:+36195135 | MS.gene056665:CDS |
GTTAATTTATGCTAGAAAGA+GGG | 0.556604 | 4.3:+36194724 | MS.gene056665:intron |
TGTTCTATCAGCAGCACTTG+AGG | 0.557792 | 4.3:+36201381 | MS.gene056665:CDS |
GGTTGGAGGATTGAAATTGG+AGG | 0.557821 | 4.3:+36194745 | MS.gene056665:CDS |
TGGTGAAGTGTTAATGGAGA+TGG | 0.558610 | 4.3:+36193514 | MS.gene056665:CDS |
TCAAATCGCCCTCTCTTCGA+TGG | 0.558656 | 4.3:+36195163 | MS.gene056665:CDS |
ACCTGTAACAAGCTCTCCTG+TGG | 0.558940 | 4.3:-36192760 | None:intergenic |
TTGTACTTACAGCCGGTGTA+CGG | 0.561463 | 4.3:-36196404 | None:intergenic |
TCGCAAATTCGTCTTGAACA+AGG | 0.562186 | 4.3:+36191533 | MS.gene056665:CDS |
GTTATTGCATGCTTACATTG+TGG | 0.563138 | 4.3:-36201286 | None:intergenic |
TTGGATACACTGAAGATCCC+AGG | 0.564786 | 4.3:+36194779 | MS.gene056665:CDS |
ATTGCAGGTTACTGGTATTG+TGG | 0.567738 | 4.3:+36191713 | MS.gene056665:CDS |
ATTGTGACAGCATGTTCTGA+TGG | 0.570097 | 4.3:+36194319 | MS.gene056665:CDS |
CCAGGAAATATCATTGTGGT+TGG | 0.571275 | 4.3:-36198663 | None:intergenic |
CTGAGATTATGGGCAGTAAG+TGG | 0.572984 | 4.3:+36193494 | MS.gene056665:CDS |
ATAACGGAGTTGCGTATGCA+TGG | 0.573334 | 4.3:+36194968 | MS.gene056665:CDS |
GGCCACGAAGACGACGTTCG+CGG | 0.576951 | 4.3:+36191429 | MS.gene056665:CDS |
CACGGTGGTGTTGTTTCTGG+TGG | 0.577915 | 4.3:+36191621 | MS.gene056665:CDS |
ACTTGCTCACGAAAAGAAAG+AGG | 0.579161 | 4.3:-36196317 | None:intergenic |
AGTAATTGATATTACAAGGA+TGG | 0.580730 | 4.3:+36198846 | MS.gene056665:intron |
TGGCTATTCAGTGTTTGATG+TGG | 0.585313 | 4.3:+36195281 | MS.gene056665:intron |
CACCACCGTGTGGCAAATCA+GGG | 0.586231 | 4.3:-36191608 | None:intergenic |
ATGCAGTAATTGATATTACA+AGG | 0.586946 | 4.3:+36198842 | MS.gene056665:intron |
CCGAACCCTGATTTGCCACA+CGG | 0.587140 | 4.3:+36191603 | MS.gene056665:CDS |
TTTGTATCCCAAACACAACC+AGG | 0.587884 | 4.3:-36194277 | None:intergenic |
GTTCAGAGCATAGAGCATCC+TGG | 0.589154 | 4.3:+36194259 | MS.gene056665:CDS |
TTGACCTGGTACGTAAGCAT+TGG | 0.590773 | 4.3:-36196541 | None:intergenic |
ATGGGCAATGCATAGAGACA+TGG | 0.594108 | 4.3:+36192697 | MS.gene056665:CDS |
TAATAAGGCATTATTGAACT+CGG | 0.595227 | 4.3:-36197775 | None:intergenic |
ATTGAATCTAAGGATCAAGA+AGG | 0.596449 | 4.3:+36201349 | MS.gene056665:CDS |
GAATGTACAGATACTGTTCG+TGG | 0.597426 | 4.3:+36193313 | MS.gene056665:intron |
GAAGTGCAATAGCCCCGTCT+GGG | 0.600322 | 4.3:-36198879 | None:intergenic |
TGCTGATAAATGGCTACTCA+AGG | 0.601467 | 4.3:+36196286 | MS.gene056665:CDS |
TAATTACCAGATGTGCGAGA+AGG | 0.603021 | 4.3:-36196564 | None:intergenic |
TCATTTCGTGATCCGTACAC+CGG | 0.603848 | 4.3:+36196392 | MS.gene056665:CDS |
ATCTGCGGCGGCGACAACGG+CGG | 0.605668 | 4.3:+36191459 | MS.gene056665:CDS |
CAGTCTGGTAAAATCCAACT+CGG | 0.608266 | 4.3:-36198541 | None:intergenic |
TTGTGAACAGGAACTTCTGA+TGG | 0.608359 | 4.3:+36194919 | MS.gene056665:intron |
CCAAACAAAAGTTGTCAGAG+AGG | 0.608732 | 4.3:+36194942 | MS.gene056665:CDS |
ACTGAACACCATCGAAGAGA+GGG | 0.608786 | 4.3:-36195171 | None:intergenic |
ATGGTAATTCTTCACCCAGA+CGG | 0.609330 | 4.3:+36198865 | MS.gene056665:CDS |
GTGACACTACTTTAAAGACC+TGG | 0.611314 | 4.3:+36192923 | MS.gene056665:CDS |
TGATAAATGGCTACTCAAGG+AGG | 0.613548 | 4.3:+36196289 | MS.gene056665:CDS |
GAGGATCACATCAAAAGTCA+AGG | 0.615612 | 4.3:-36201308 | None:intergenic |
TAATGCCTTATTATCCGACC+AGG | 0.616392 | 4.3:+36197785 | MS.gene056665:CDS |
AGATAGCATATTCAGTAGCA+AGG | 0.619959 | 4.3:-36198634 | None:intergenic |
TCTTGTGTAGTACTTTGAGG+AGG | 0.621080 | 4.3:+36192667 | MS.gene056665:intron |
CAAACAAAAGTTGTCAGAGA+GGG | 0.623484 | 4.3:+36194943 | MS.gene056665:CDS |
TTTGATGTGGATATTGGAGA+TGG | 0.624587 | 4.3:+36195294 | MS.gene056665:CDS |
CCTGTAACAAGCTCTCCTGT+GGG | 0.625764 | 4.3:-36192759 | None:intergenic |
TGGGCAATGCATAGAGACAT+GGG | 0.626538 | 4.3:+36192698 | MS.gene056665:CDS |
TACTGAACACCATCGAAGAG+AGG | 0.628823 | 4.3:-36195172 | None:intergenic |
TGTGGCAAATCAGGGTTCGG+TGG | 0.629930 | 4.3:-36191600 | None:intergenic |
GGACTTGAATAGTGGTGAGA+AGG | 0.631251 | 4.3:+36191668 | MS.gene056665:CDS |
ACTACTTTAAAGACCTGGAA+GGG | 0.635641 | 4.3:+36192928 | MS.gene056665:CDS |
GACTCCAAGATTGCTGAAGT+AGG | 0.638044 | 4.3:+36203026 | MS.gene056665:CDS |
GATAAATGGCTACTCAAGGA+GGG | 0.639126 | 4.3:+36196290 | MS.gene056665:CDS |
GCAGTTATAAAGCTACCCAC+AGG | 0.640686 | 4.3:+36192744 | MS.gene056665:CDS |
CACTACTTTAAAGACCTGGA+AGG | 0.647189 | 4.3:+36192927 | MS.gene056665:CDS |
GCATCAGGACTTATTGTCAG+TGG | 0.647307 | 4.3:+36193575 | MS.gene056665:CDS |
CGCGGAATAACCATCTGCGG+CGG | 0.647933 | 4.3:+36191447 | MS.gene056665:CDS |
AGTTGCGTATGCATGGAACA+TGG | 0.650590 | 4.3:+36194975 | MS.gene056665:CDS |
GAGACATGGGAGGCTCACAA+GGG | 0.670228 | 4.3:+36192711 | MS.gene056665:CDS |
AATCATGTAGCCTACCTGGT+CGG | 0.670619 | 4.3:-36197799 | None:intergenic |
GGTAATTCTTCACCCAGACG+GGG | 0.681729 | 4.3:+36198867 | MS.gene056665:CDS |
GATGTGCGAGAAGGTTGACC+TGG | 0.684233 | 4.3:-36196555 | None:intergenic |
TCAATAGCACTGCATAACTG+AGG | 0.687060 | 4.3:-36201327 | None:intergenic |
AGACATGGGAGGCTCACAAG+GGG | 0.691916 | 4.3:+36192712 | MS.gene056665:CDS |
AACCCTGATTTGCCACACGG+TGG | 0.695182 | 4.3:+36191606 | MS.gene056665:CDS |
CTAACCAGGAAATATCATTG+TGG | 0.698335 | 4.3:-36198667 | None:intergenic |
GATTGTCGAGGATGAAAACG+TGG | 0.708560 | 4.3:+36202316 | MS.gene056665:intron |
GTTCGCGGAATAACCATCTG+CGG | 0.717853 | 4.3:+36191444 | MS.gene056665:CDS |
CCAGAAACAACACCACCGTG+TGG | 0.726363 | 4.3:-36191618 | None:intergenic |
GAAGTGTTAATGGAGATGGT+TGG | 0.733230 | 4.3:+36193518 | MS.gene056665:CDS |
GCAATGCATAGAGACATGGG+AGG | 0.774744 | 4.3:+36192701 | MS.gene056665:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 36191384 | 36203082 | 36191384 | ID=MS.gene056665 |
chr4.3 | mRNA | 36191384 | 36203082 | 36191384 | ID=MS.gene056665.t1;Parent=MS.gene056665 |
chr4.3 | exon | 36191384 | 36191772 | 36191384 | ID=MS.gene056665.t1.exon1;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36191384 | 36191772 | 36191384 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36192677 | 36192780 | 36192677 | ID=MS.gene056665.t1.exon2;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36192677 | 36192780 | 36192677 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36192917 | 36192985 | 36192917 | ID=MS.gene056665.t1.exon3;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36192917 | 36192985 | 36192917 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36193323 | 36193383 | 36193323 | ID=MS.gene056665.t1.exon4;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36193323 | 36193383 | 36193323 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36193490 | 36193629 | 36193490 | ID=MS.gene056665.t1.exon5;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36193490 | 36193629 | 36193490 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36194248 | 36194437 | 36194248 | ID=MS.gene056665.t1.exon6;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36194248 | 36194437 | 36194248 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36194739 | 36194800 | 36194739 | ID=MS.gene056665.t1.exon7;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36194739 | 36194800 | 36194739 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36194929 | 36195017 | 36194929 | ID=MS.gene056665.t1.exon8;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36194929 | 36195017 | 36194929 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36195133 | 36195202 | 36195133 | ID=MS.gene056665.t1.exon9;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36195133 | 36195202 | 36195133 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36195292 | 36195351 | 36195292 | ID=MS.gene056665.t1.exon10;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36195292 | 36195351 | 36195292 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36196270 | 36196416 | 36196270 | ID=MS.gene056665.t1.exon11;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36196270 | 36196416 | 36196270 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36196541 | 36196579 | 36196541 | ID=MS.gene056665.t1.exon12;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36196541 | 36196579 | 36196541 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36196884 | 36196921 | 36196884 | ID=MS.gene056665.t1.exon13;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36196884 | 36196921 | 36196884 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36197720 | 36197806 | 36197720 | ID=MS.gene056665.t1.exon14;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36197720 | 36197806 | 36197720 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36198519 | 36198684 | 36198519 | ID=MS.gene056665.t1.exon15;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36198519 | 36198684 | 36198519 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36198848 | 36198925 | 36198848 | ID=MS.gene056665.t1.exon16;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36198848 | 36198925 | 36198848 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36199528 | 36199659 | 36199528 | ID=MS.gene056665.t1.exon17;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36199528 | 36199659 | 36199528 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36201254 | 36201402 | 36201254 | ID=MS.gene056665.t1.exon18;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36201254 | 36201402 | 36201254 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36202317 | 36202382 | 36202317 | ID=MS.gene056665.t1.exon19;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36202317 | 36202382 | 36202317 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
chr4.3 | exon | 36202948 | 36203082 | 36202948 | ID=MS.gene056665.t1.exon20;Parent=MS.gene056665.t1 |
chr4.3 | CDS | 36202948 | 36203082 | 36202948 | ID=cds.MS.gene056665.t1;Parent=MS.gene056665.t1 |
Gene Sequence |
Protein sequence |