Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050116.t1 | RHN42411.1 | 96.6 | 417 | 13 | 1 | 18 | 434 | 1 | 416 | 5.30E-228 | 800 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050116.t1 | Q9SGE9 | 73.6 | 417 | 98 | 3 | 18 | 434 | 1 | 405 | 4.9e-174 | 612.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050116.t1 | A0A396GQF4 | 96.6 | 417 | 13 | 1 | 18 | 434 | 1 | 416 | 3.8e-228 | 800.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene050116 | 0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene050116 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene050116 | 0.861474 | 1.00E-63 | -1.69E-46 |
| MS.gene050116 | MS.gene050117 | 0.866033 | 3.83E-65 | -1.69E-46 |
| MS.gene050116 | MS.gene051809 | 0.820121 | 8.11E-53 | -1.69E-46 |
| MS.gene050116 | MS.gene057213 | 0.815709 | 8.05E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene058638 | 0.851703 | 7.47E-61 | -1.69E-46 |
| MS.gene050116 | MS.gene058639 | 0.835117 | 2.02E-56 | -1.69E-46 |
| MS.gene050116 | MS.gene058758 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene059007 | 0.832334 | 1.00E-55 | -1.69E-46 |
| MS.gene050116 | MS.gene060563 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene065593 | 0.837185 | 6.03E-57 | -1.69E-46 |
| MS.gene050116 | MS.gene065934 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene06946 | 0.805379 | 1.37E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene072285 | -0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene050116 | MS.gene20018 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene22545 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene23976 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene24205 | 0.840696 | 7.44E-58 | -1.69E-46 |
| MS.gene050116 | MS.gene26396 | 0.817315 | 3.52E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene26426 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene27287 | 0.85805 | 1.07E-62 | -1.69E-46 |
| MS.gene050116 | MS.gene28613 | 0.808893 | 2.48E-50 | -1.69E-46 |
| MS.gene050116 | MS.gene29047 | 0.821505 | 3.90E-53 | -1.69E-46 |
| MS.gene050116 | MS.gene29109 | 0.802705 | 4.94E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene29229 | 0.830388 | 3.02E-55 | -1.69E-46 |
| MS.gene050116 | MS.gene30760 | 0.823312 | 1.48E-53 | -1.69E-46 |
| MS.gene050116 | MS.gene34282 | 0.816194 | 6.27E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene34907 | 0.851905 | 6.54E-61 | -1.69E-46 |
| MS.gene050116 | MS.gene35651 | 0.816768 | 4.66E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene44170 | 0.809246 | 2.08E-50 | -1.69E-46 |
| MS.gene050116 | MS.gene46910 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene47554 | 0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene47695 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene47985 | 0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene050116 | MS.gene48283 | 0.838615 | 2.59E-57 | -1.69E-46 |
| MS.gene050116 | MS.gene51028 | 0.834049 | 3.75E-56 | -1.69E-46 |
| MS.gene050116 | MS.gene51029 | 0.837022 | 6.64E-57 | -1.69E-46 |
| MS.gene050116 | MS.gene54037 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene58134 | 0.800644 | 1.31E-48 | -1.69E-46 |
| MS.gene050116 | MS.gene58508 | 0.826609 | 2.47E-54 | -1.69E-46 |
| MS.gene050116 | MS.gene58617 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene59366 | 0.828939 | 6.80E-55 | -1.69E-46 |
| MS.gene050116 | MS.gene60144 | 0.813452 | 2.54E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene62501 | 0.822009 | 2.98E-53 | -1.69E-46 |
| MS.gene050116 | MS.gene64734 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene66637 | 0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene66825 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene66858 | 0.814885 | 1.23E-51 | -1.69E-46 |
| MS.gene050116 | MS.gene73340 | 0.801549 | 8.55E-49 | -1.69E-46 |
| MS.gene050116 | MS.gene76581 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene050116 | MS.gene76632 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene050116 | MS.gene80202 | 0.824972 | 6.04E-54 | -1.69E-46 |
| MS.gene050116 | MS.gene82989 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene050116 | MS.gene83689 | 0.822958 | 1.79E-53 | -1.69E-46 |
| MS.gene050116 | MS.gene89570 | 0.843018 | 1.81E-58 | -1.69E-46 |
| MS.gene050116 | MS.gene99525 | 0.813668 | 2.28E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050116.t1 | MTR_4g112680 | 94.484 | 417 | 21 | 2 | 18 | 434 | 1 | 415 | 0.0 | 810 |
| MS.gene050116.t1 | MTR_4g112680 | 94.484 | 417 | 21 | 2 | 18 | 434 | 1 | 415 | 0.0 | 809 |
| MS.gene050116.t1 | MTR_5g077610 | 93.724 | 239 | 14 | 1 | 18 | 256 | 1 | 238 | 7.05e-152 | 441 |
| MS.gene050116.t1 | MTR_5g077610 | 97.727 | 88 | 2 | 0 | 347 | 434 | 251 | 338 | 2.67e-50 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050116.t1 | AT1G72550 | 72.902 | 417 | 101 | 3 | 18 | 434 | 1 | 405 | 0.0 | 610 |
| MS.gene050116.t1 | AT1G72550 | 72.902 | 417 | 101 | 3 | 18 | 434 | 1 | 405 | 0.0 | 610 |
Find 83 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGATGTTGCCATCGCTTA+TGG | 0.168492 | 4.4:-17138118 | MS.gene050116:CDS |
| TCAAGCAATAATCGATAATA+AGG | 0.251278 | 4.4:-17138077 | MS.gene050116:CDS |
| TTATGGGTTCAATGCTATTA+AGG | 0.258944 | 4.4:-17138101 | MS.gene050116:CDS |
| GTTTCTCTATCTTACATTAC+TGG | 0.270965 | 4.4:-17139071 | MS.gene050116:CDS |
| AAATCAACCTCGTAGGTAAA+AGG | 0.313790 | 4.4:+17141422 | None:intergenic |
| GAAGACCTATGCTTCAGTTT+TGG | 0.314391 | 4.4:-17143474 | MS.gene050116:CDS |
| CACTCATGATCTGGATAAAC+TGG | 0.323256 | 4.4:-17141450 | MS.gene050116:CDS |
| TGATTTATCCGTCTACAATA+TGG | 0.331082 | 4.4:-17139096 | MS.gene050116:CDS |
| CGCCATTGGCACTCATGATC+TGG | 0.341241 | 4.4:-17141459 | MS.gene050116:CDS |
| ATTTATAAGTAGGGATTTCC+TGG | 0.342583 | 4.4:+17142321 | None:intergenic |
| AGCATGCCTACCGTGAGTTT+AGG | 0.345299 | 4.4:-17143615 | MS.gene050116:CDS |
| CATGGCAGGAAAGGAGCTTC+AGG | 0.351391 | 4.4:-17141069 | MS.gene050116:intron |
| CTCTTACTATCATATATAAC+TGG | 0.371043 | 4.4:+17140782 | None:intergenic |
| GCATGCCTACCGTGAGTTTA+GGG | 0.375297 | 4.4:-17143614 | MS.gene050116:CDS |
| TTGCATCCGGTTTAAGAACT+TGG | 0.381322 | 4.4:+17138342 | None:intergenic |
| AAATTGAAATTCCTGCTAAT+AGG | 0.389907 | 4.4:-17143264 | MS.gene050116:intron |
| TATGACCTACTCTGCCTTGA+AGG | 0.394474 | 4.4:-17142377 | MS.gene050116:CDS |
| GAATGCGCACCATTGATAAT+TGG | 0.394590 | 4.4:+17139390 | None:intergenic |
| AGGATGTTGCCATCGCTTAT+GGG | 0.398057 | 4.4:-17138117 | MS.gene050116:CDS |
| TCTTCATCCATGTGATGTTA+TGG | 0.411069 | 4.4:-17138242 | MS.gene050116:CDS |
| TAACTTTACGCCTCTAAAAC+AGG | 0.412093 | 4.4:-17141230 | MS.gene050116:intron |
| TCATATATAACTGGATAAAC+AGG | 0.422626 | 4.4:+17140791 | None:intergenic |
| AGCTTCATCAAAATATTTGT+CGG | 0.433457 | 4.4:-17142070 | MS.gene050116:intron |
| CCTACTCTGCCTTGAAGGAT+TGG | 0.437874 | 4.4:-17142372 | MS.gene050116:CDS |
| TAAATTGTCTGACATTAGTA+AGG | 0.440874 | 4.4:-17142303 | MS.gene050116:CDS |
| CAAGCAATAATCGATAATAA+GGG | 0.444484 | 4.4:-17138076 | MS.gene050116:CDS |
| TGTCAGACAATTTATAAGTA+GGG | 0.445766 | 4.4:+17142312 | None:intergenic |
| TCTATCTTACATTACTGGAT+TGG | 0.449912 | 4.4:-17139066 | MS.gene050116:CDS |
| GAAATTCTTGCATATAATTG+AGG | 0.460329 | 4.4:-17140819 | MS.gene050116:CDS |
| TCTTTACCACCAATTATCAA+TGG | 0.464631 | 4.4:-17139399 | MS.gene050116:CDS |
| CAGTTATATATGATAGTAAG+AGG | 0.467004 | 4.4:-17140781 | MS.gene050116:intron |
| GCTTAGCATGCAATTGCATC+CGG | 0.467826 | 4.4:+17138329 | None:intergenic |
| TTCTTAGGTAACAGCCTTCG+CGG | 0.469465 | 4.4:-17139192 | MS.gene050116:intron |
| AGGTTACCAAGTTCTTAAAC+CGG | 0.469844 | 4.4:-17138348 | MS.gene050116:CDS |
| ATGTCAGACAATTTATAAGT+AGG | 0.470269 | 4.4:+17142311 | None:intergenic |
| GTCGAAGTGATTTCTTCTGA+TGG | 0.483259 | 4.4:-17139137 | MS.gene050116:CDS |
| ATATTGTAGACGGATAAATC+AGG | 0.491517 | 4.4:+17139098 | None:intergenic |
| GGGCTTGAGCCAATCCTTCA+AGG | 0.493616 | 4.4:+17142363 | None:intergenic |
| CGAAGAACTCTTGTCGCCAT+TGG | 0.496917 | 4.4:-17141473 | MS.gene050116:CDS |
| ATTGGTCGGAGTATCGTTAG+AGG | 0.505470 | 4.4:-17139048 | MS.gene050116:CDS |
| CTTCAGGGCTGATGAGCTCA+TGG | 0.507491 | 4.4:-17141053 | MS.gene050116:CDS |
| CTTGACACTACTTCCTCTGC+AGG | 0.508890 | 4.4:-17138032 | MS.gene050116:CDS |
| ATGGCAGGAAAGGAGCTTCA+GGG | 0.512062 | 4.4:-17141068 | MS.gene050116:intron |
| TCAGAAGAAATCACTTCGAC+AGG | 0.520858 | 4.4:+17139140 | None:intergenic |
| GGCGTAAAGTTAATACTAGA+AGG | 0.521759 | 4.4:+17141241 | None:intergenic |
| TGAAGAACATCACTTCTAGT+AGG | 0.530614 | 4.4:+17138259 | None:intergenic |
| AGGGGTGGGTACCTATTAGC+AGG | 0.533127 | 4.4:+17143253 | None:intergenic |
| GTTGTATGTGCTGTATTAAG+AGG | 0.534713 | 4.4:-17142143 | MS.gene050116:CDS |
| GTTCTTTGTCTCCAGAGTGA+TGG | 0.544499 | 4.4:+17139365 | None:intergenic |
| CCTGGAACCCACAGAAAACT+CGG | 0.547117 | 4.4:+17142339 | None:intergenic |
| GCCTACCGTGAGTTTAGGGC+GGG | 0.550193 | 4.4:-17143610 | MS.gene050116:CDS |
| GAGCGATCTTATCAGAAAAG+AGG | 0.555737 | 4.4:-17138005 | MS.gene050116:CDS |
| CAATTCCAAAACTGAAGCAT+AGG | 0.560611 | 4.4:+17143469 | None:intergenic |
| AATACAGCACATACAACATA+CGG | 0.563509 | 4.4:+17142149 | None:intergenic |
| TGCTGTTCTTCGCAAAATCG+CGG | 0.567136 | 4.4:+17143634 | None:intergenic |
| TGCGCATTCAGCCATCACTC+TGG | 0.580971 | 4.4:-17139376 | MS.gene050116:CDS |
| ATCCAGATCATGAGTGCCAA+TGG | 0.581047 | 4.4:+17141457 | None:intergenic |
| AGAACAAGAAGAAGCTGATG+AGG | 0.587439 | 4.4:-17143305 | MS.gene050116:CDS |
| TCTTACATTACTGGATTGGT+CGG | 0.588320 | 4.4:-17139062 | MS.gene050116:CDS |
| AGTATCGTTAGAGGCAGAAG+AGG | 0.589218 | 4.4:-17139039 | MS.gene050116:intron |
| GATCGACTGTTTGCAGCTCT+AGG | 0.594041 | 4.4:-17143588 | MS.gene050116:CDS |
| AAGCAATAATCGATAATAAG+GGG | 0.604733 | 4.4:-17138075 | MS.gene050116:CDS |
| TCATCCATGTGATGTTATGG+AGG | 0.610955 | 4.4:-17138239 | MS.gene050116:intron |
| CCAATCCTTCAAGGCAGAGT+AGG | 0.611521 | 4.4:+17142372 | None:intergenic |
| AGAAACTTCCATATTGTAGA+CGG | 0.611613 | 4.4:+17139088 | None:intergenic |
| TATTGTAGACGGATAAATCA+GGG | 0.617329 | 4.4:+17139099 | None:intergenic |
| TTGAAAGAAATCAACCTCGT+AGG | 0.620527 | 4.4:+17141415 | None:intergenic |
| AGCATTGAACCCATAAGCGA+TGG | 0.622930 | 4.4:+17138108 | None:intergenic |
| CTGCAGAGGAAGTAGTGTCA+AGG | 0.624219 | 4.4:+17138033 | None:intergenic |
| TCATGATCTGGATAAACTGG+AGG | 0.627307 | 4.4:-17141447 | MS.gene050116:CDS |
| AGAACATCACTTCTAGTAGG+AGG | 0.638419 | 4.4:+17138262 | None:intergenic |
| TCGATCCCGCCCTAAACTCA+CGG | 0.638719 | 4.4:+17143605 | None:intergenic |
| CACTGCTACTGATCTGACAA+AGG | 0.639733 | 4.4:-17139328 | MS.gene050116:CDS |
| TAAAATACATATAAAGCCAG+AGG | 0.642113 | 4.4:-17142270 | MS.gene050116:intron |
| TGCCTACCGTGAGTTTAGGG+CGG | 0.643150 | 4.4:-17143611 | MS.gene050116:CDS |
| GAACCCACAGAAAACTCGGA+GGG | 0.649688 | 4.4:+17142343 | None:intergenic |
| TGCGCACCATTGATAATTGG+TGG | 0.652799 | 4.4:+17139393 | None:intergenic |
| AGATCGCTCAGCTCCTGCAG+AGG | 0.653077 | 4.4:+17138019 | None:intergenic |
| AGTACCTCCATAACATCACA+TGG | 0.655899 | 4.4:+17138235 | None:intergenic |
| CATGATCTGGATAAACTGGA+GGG | 0.664709 | 4.4:-17141446 | MS.gene050116:CDS |
| GTAAAGTTAATACTAGAAGG+TGG | 0.672394 | 4.4:+17141244 | None:intergenic |
| TCCCGCCCTAAACTCACGGT+AGG | 0.675464 | 4.4:+17143609 | None:intergenic |
| GGAACCCACAGAAAACTCGG+AGG | 0.726992 | 4.4:+17142342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAATATAACTTATAA+AGG | + | chr4.4:17142750-17142769 | None:intergenic | 10.0% |
| !! | TTATAAGTTATATTTACAAT+TGG | - | chr4.4:17142750-17142769 | MS.gene050116:intron | 10.0% |
| !!! | ACAATTTTATTATTAGTTTA+GGG | + | chr4.4:17141084-17141103 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTCTTTGATT+TGG | - | chr4.4:17138822-17138841 | MS.gene050116:intron | 10.0% |
| !! | AAATAAATTAGAATTTCAAC+AGG | + | chr4.4:17141846-17141865 | None:intergenic | 15.0% |
| !! | ACAAAAAACACTTAAAAAAA+AGG | + | chr4.4:17138479-17138498 | None:intergenic | 15.0% |
| !! | ACTAATAATAAAATTGTGAA+TGG | - | chr4.4:17141087-17141106 | MS.gene050116:intron | 15.0% |
| !! | ATCAAAGAAAAATAAATAAG+AGG | + | chr4.4:17138821-17138840 | None:intergenic | 15.0% |
| !! | TAATCAAATTAGTAAGAAAA+TGG | + | chr4.4:17140334-17140353 | None:intergenic | 15.0% |
| !! | TAATTATAAAATTTATGGCA+TGG | - | chr4.4:17141199-17141218 | MS.gene050116:intron | 15.0% |
| !! | TATACTATATATATAAAGCA+AGG | + | chr4.4:17140669-17140688 | None:intergenic | 15.0% |
| !! | TTATTATGATGATAATTAGT+TGG | + | chr4.4:17138263-17138282 | None:intergenic | 15.0% |
| !!! | AAAAATTGTTCTAAATACAA+TGG | - | chr4.4:17142359-17142378 | MS.gene050116:CDS | 15.0% |
| !!! | AAGTTTTGCAAATTTAAAAA+TGG | + | chr4.4:17140929-17140948 | None:intergenic | 15.0% |
| !!! | AATTTAAAAATTGTTGGTTT+TGG | + | chr4.4:17138594-17138613 | None:intergenic | 15.0% |
| !!! | AATTTTTTAAGTAAACAGAT+AGG | + | chr4.4:17139695-17139714 | None:intergenic | 15.0% |
| !!! | AGTTTTGCAAATTTAAAAAT+GGG | + | chr4.4:17140928-17140947 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTAGTGCATAAA+AGG | - | chr4.4:17140024-17140043 | MS.gene050116:intron | 15.0% |
| !!! | CACAATTTTATTATTAGTTT+AGG | + | chr4.4:17141085-17141104 | None:intergenic | 15.0% |
| !!! | TTTTTTAAGTGTTTTTTGTT+TGG | - | chr4.4:17138480-17138499 | MS.gene050116:intron | 15.0% |
| !! | AATACTTATTATCAATGATG+TGG | - | chr4.4:17139103-17139122 | MS.gene050116:CDS | 20.0% |
| !! | AATTAACAGAAAATAGAGAA+GGG | + | chr4.4:17142119-17142138 | None:intergenic | 20.0% |
| !! | ATAATTGAAGAATGATTGAA+AGG | + | chr4.4:17138132-17138151 | None:intergenic | 20.0% |
| !! | ATATTGATACTTAGTTAAAC+TGG | - | chr4.4:17138906-17138925 | MS.gene050116:intron | 20.0% |
| !! | CACACATAAAAAATTTAGAT+TGG | + | chr4.4:17138777-17138796 | None:intergenic | 20.0% |
| !! | GAAAAAATTGGGAAAAATTA+TGG | + | chr4.4:17143295-17143314 | None:intergenic | 20.0% |
| !! | GCAACATAAACATAAAATAT+AGG | + | chr4.4:17138701-17138720 | None:intergenic | 20.0% |
| !! | GTACTTCTCAATAAATTTAT+AGG | + | chr4.4:17142659-17142678 | None:intergenic | 20.0% |
| !! | TAAGCTTTCTATCATTAATT+AGG | - | chr4.4:17142701-17142720 | MS.gene050116:intron | 20.0% |
| !!! | ATACAAGAAATATGACTTTT+TGG | - | chr4.4:17141660-17141679 | MS.gene050116:intron | 20.0% |
| !!! | ATTTATTCTGTTTTTCTGTT+TGG | - | chr4.4:17140752-17140771 | MS.gene050116:intron | 20.0% |
| !!! | CAACAATTTTTAAATTTGCA+GGG | - | chr4.4:17138598-17138617 | MS.gene050116:intron | 20.0% |
| !!! | GCATGTTATTTTTTTAGTTT+TGG | - | chr4.4:17141400-17141419 | MS.gene050116:intron | 20.0% |
| !!! | GTGAGAAAAAAAAATGTTTT+TGG | - | chr4.4:17140507-17140526 | MS.gene050116:intron | 20.0% |
| !!! | GTTTTGCAAATTTAAAAATG+GGG | + | chr4.4:17140927-17140946 | None:intergenic | 20.0% |
| !!! | TAAAACAGGTAACTTTATTT+GGG | - | chr4.4:17140447-17140466 | MS.gene050116:intron | 20.0% |
| !!! | TAATTTTTCCCAATTTTTTC+AGG | - | chr4.4:17143295-17143314 | MS.gene050116:CDS | 20.0% |
| !!! | TCTAGATCATTAACTTTTTT+GGG | - | chr4.4:17142848-17142867 | MS.gene050116:intron | 20.0% |
| !!! | TGTAGAAATGCTTTTAATTA+TGG | - | chr4.4:17142092-17142111 | MS.gene050116:CDS | 20.0% |
| !!! | TTTTTTATCAAGTAGTTTAG+TGG | - | chr4.4:17138963-17138982 | MS.gene050116:intron | 20.0% |
| ! | AAAAAATAACATGCAACCAA+TGG | + | chr4.4:17141394-17141413 | None:intergenic | 25.0% |
| ! | AAATGAAAAATTGTGACATG+TGG | - | chr4.4:17142152-17142171 | MS.gene050116:CDS | 25.0% |
| ! | AAATTAGAATTTCAACAGGT+AGG | + | chr4.4:17141842-17141861 | None:intergenic | 25.0% |
| ! | AAATTGAAATTCCTGCTAAT+AGG | - | chr4.4:17138399-17138418 | MS.gene050116:intron | 25.0% |
| ! | AAGCAATAATCGATAATAAG+GGG | - | chr4.4:17143588-17143607 | MS.gene050116:CDS | 25.0% |
| ! | AATATTGTAACACCAAGAAA+AGG | + | chr4.4:17142424-17142443 | None:intergenic | 25.0% |
| ! | AATCTGTCTATTATCTAACA+TGG | - | chr4.4:17141465-17141484 | MS.gene050116:CDS | 25.0% |
| ! | AATTAGAATTTCAACAGGTA+GGG | + | chr4.4:17141841-17141860 | None:intergenic | 25.0% |
| ! | ACAGCATTACTGAATATTAA+AGG | + | chr4.4:17142178-17142197 | None:intergenic | 25.0% |
| ! | AGCTTCATCAAAATATTTGT+CGG | - | chr4.4:17139593-17139612 | MS.gene050116:intron | 25.0% |
| ! | AGGAGAAATAATATAACTAG+TGG | + | chr4.4:17141781-17141800 | None:intergenic | 25.0% |
| ! | ATAAAAACGCAATAATTGCA+GGG | + | chr4.4:17138448-17138467 | None:intergenic | 25.0% |
| ! | ATGATATCAAAAACTCGATA+AGG | + | chr4.4:17140002-17140021 | None:intergenic | 25.0% |
| ! | ATGTCAGACAATTTATAAGT+AGG | + | chr4.4:17139355-17139374 | None:intergenic | 25.0% |
| ! | ATTAACAGAAAATAGAGAAG+GGG | + | chr4.4:17142118-17142137 | None:intergenic | 25.0% |
| ! | CAAGAAAAGGTAAACAAAAA+AGG | + | chr4.4:17142411-17142430 | None:intergenic | 25.0% |
| ! | CAAGCAATAATCGATAATAA+GGG | - | chr4.4:17143587-17143606 | MS.gene050116:CDS | 25.0% |
| ! | CAATTAACAGAAAATAGAGA+AGG | + | chr4.4:17142120-17142139 | None:intergenic | 25.0% |
| ! | CAGTTATATATGATAGTAAG+AGG | - | chr4.4:17140882-17140901 | MS.gene050116:intron | 25.0% |
| ! | CCTGCAAATTTAAAAATTGT+TGG | + | chr4.4:17138600-17138619 | None:intergenic | 25.0% |
| ! | CCTTAAAAGAATTCAAATAC+GGG | + | chr4.4:17140284-17140303 | None:intergenic | 25.0% |
| ! | CTAAAACAAACGAAACAAAT+TGG | + | chr4.4:17141738-17141757 | None:intergenic | 25.0% |
| ! | CTAAAACAGGTAACTTTATT+TGG | - | chr4.4:17140446-17140465 | MS.gene050116:intron | 25.0% |
| ! | CTACATTGAAAAAGTTAAGT+AGG | - | chr4.4:17141931-17141950 | MS.gene050116:intron | 25.0% |
| ! | CTCTTACTATCATATATAAC+TGG | + | chr4.4:17140884-17140903 | None:intergenic | 25.0% |
| ! | CTTAAAAGAATTCAAATACG+GGG | + | chr4.4:17140283-17140302 | None:intergenic | 25.0% |
| ! | CTTAGTTAAACTGGAATTAA+TGG | - | chr4.4:17138915-17138934 | MS.gene050116:intron | 25.0% |
| ! | GAAATTCTTGCATATAATTG+AGG | - | chr4.4:17140844-17140863 | MS.gene050116:intron | 25.0% |
| ! | GAAGCATATTTGACTAAATA+TGG | + | chr4.4:17139723-17139742 | None:intergenic | 25.0% |
| ! | GACTATGTTAAATAATGTTC+AGG | - | chr4.4:17141160-17141179 | MS.gene050116:intron | 25.0% |
| ! | GCCTTAAAAGAATTCAAATA+CGG | + | chr4.4:17140285-17140304 | None:intergenic | 25.0% |
| ! | TAAAATACATATAAAGCCAG+AGG | - | chr4.4:17139393-17139412 | MS.gene050116:CDS | 25.0% |
| ! | TAAATACAAACAAAGCTTTG+TGG | + | chr4.4:17140990-17141009 | None:intergenic | 25.0% |
| ! | TAAATTGTCTGACATTAGTA+AGG | - | chr4.4:17139360-17139379 | MS.gene050116:CDS | 25.0% |
| ! | TAAGATCTGTACATAATACA+GGG | - | chr4.4:17143088-17143107 | MS.gene050116:intron | 25.0% |
| ! | TATACATGTTCAGTATTTGT+TGG | - | chr4.4:17142786-17142805 | MS.gene050116:intron | 25.0% |
| ! | TCAAGCAATAATCGATAATA+AGG | - | chr4.4:17143586-17143605 | MS.gene050116:CDS | 25.0% |
| ! | TCATATATAACTGGATAAAC+AGG | + | chr4.4:17140875-17140894 | None:intergenic | 25.0% |
| ! | TCATGCTGTAAATTAAAATC+TGG | + | chr4.4:17142993-17143012 | None:intergenic | 25.0% |
| ! | TGTCAGACAATTTATAAGTA+GGG | + | chr4.4:17139354-17139373 | None:intergenic | 25.0% |
| ! | TTAAGATCTGTACATAATAC+AGG | - | chr4.4:17143087-17143106 | MS.gene050116:intron | 25.0% |
| ! | TTGATTATATCTTGTTCTCT+AGG | - | chr4.4:17140347-17140366 | MS.gene050116:intron | 25.0% |
| !! | AAAACAGGTAACTTTATTTG+GGG | - | chr4.4:17140448-17140467 | MS.gene050116:intron | 25.0% |
| !! | AAACAATTCATTTTCCACTT+AGG | + | chr4.4:17139462-17139481 | None:intergenic | 25.0% |
| !! | ACATATATGTTTTACAGACA+AGG | - | chr4.4:17143496-17143515 | MS.gene050116:intron | 25.0% |
| !! | ATTTTCAGTGAAAAATCTCA+AGG | + | chr4.4:17141588-17141607 | None:intergenic | 25.0% |
| !! | ATTTTTCACTGAAAATTCAG+AGG | - | chr4.4:17141592-17141611 | MS.gene050116:intron | 25.0% |
| !! | CCAACAATTTTTAAATTTGC+AGG | - | chr4.4:17138597-17138616 | MS.gene050116:intron | 25.0% |
| !! | TAATTTATTTCTCGGACTAA+AGG | - | chr4.4:17143028-17143047 | MS.gene050116:intron | 25.0% |
| !! | TTACCTGCTAATTTATTTCT+CGG | - | chr4.4:17143020-17143039 | MS.gene050116:intron | 25.0% |
| !! | TTGTTCTAAATACAATGGTA+TGG | - | chr4.4:17142364-17142383 | MS.gene050116:CDS | 25.0% |
| !!! | AATAAAGTTACCTGTTTTAG+AGG | + | chr4.4:17140446-17140465 | None:intergenic | 25.0% |
| !!! | ACAAAGCTTTGTTTGTATTT+AGG | - | chr4.4:17140989-17141008 | MS.gene050116:intron | 25.0% |
| !!! | ACAATTGTTTTAGAATTTGC+AGG | + | chr4.4:17138513-17138532 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTCATTCTGTTTC+AGG | - | chr4.4:17140167-17140186 | MS.gene050116:intron | 25.0% |
| !!! | CAATTGTTTTAGAATTTGCA+GGG | + | chr4.4:17138512-17138531 | None:intergenic | 25.0% |
| !!! | CTAGATCATTAACTTTTTTG+GGG | - | chr4.4:17142849-17142868 | MS.gene050116:intron | 25.0% |
| !!! | CTTTTTTGTTTACCTTTTCT+TGG | - | chr4.4:17142409-17142428 | MS.gene050116:intron | 25.0% |
| !!! | GTCTAGATCATTAACTTTTT+TGG | - | chr4.4:17142847-17142866 | MS.gene050116:intron | 25.0% |
| !!! | TTCTTGGTGTTACAATATTT+CGG | - | chr4.4:17142425-17142444 | MS.gene050116:intron | 25.0% |
| !!! | TTTGTTTCGTTTGTTTTAGT+TGG | - | chr4.4:17141739-17141758 | MS.gene050116:intron | 25.0% |
| !!! | TTTTTAGTTTTGGTATTGCT+TGG | - | chr4.4:17141410-17141429 | MS.gene050116:intron | 25.0% |
| AACTGGAATTAATGGAATAC+TGG | - | chr4.4:17138923-17138942 | MS.gene050116:intron | 30.0% | |
| AAGATCTGTACATAATACAG+GGG | - | chr4.4:17143089-17143108 | MS.gene050116:intron | 30.0% | |
| AATACAGCACATACAACATA+CGG | + | chr4.4:17139517-17139536 | None:intergenic | 30.0% | |
| AATCATTCACAGATGCATAT+TGG | - | chr4.4:17143466-17143485 | MS.gene050116:CDS | 30.0% | |
| ACTCGATAAGGAGAAAATAA+AGG | + | chr4.4:17139990-17140009 | None:intergenic | 30.0% | |
| AGAAACTTCCATATTGTAGA+CGG | + | chr4.4:17142578-17142597 | None:intergenic | 30.0% | |
| AGAATAAATGAACACCTTGT+TGG | + | chr4.4:17140741-17140760 | None:intergenic | 30.0% | |
| AGAATGATTGAAAGGAGAAA+TGG | + | chr4.4:17138124-17138143 | None:intergenic | 30.0% | |
| AGACTATTCTCTGATTTCTT+AGG | - | chr4.4:17142456-17142475 | MS.gene050116:intron | 30.0% | |
| AGATAAAAGAACCAAAAGAG+GGG | + | chr4.4:17143524-17143543 | None:intergenic | 30.0% | |
| AGTTGGAGTTGGAAATAAAA+AGG | + | chr4.4:17138246-17138265 | None:intergenic | 30.0% | |
| ATATTGTAGACGGATAAATC+AGG | + | chr4.4:17142568-17142587 | None:intergenic | 30.0% | |
| ATGACATGATTGAGTAAATG+TGG | - | chr4.4:17138746-17138765 | MS.gene050116:intron | 30.0% | |
| ATTTATAAGTAGGGATTTCC+TGG | + | chr4.4:17139345-17139364 | None:intergenic | 30.0% | |
| CAAACATCGCTTCATATTAA+AGG | + | chr4.4:17141691-17141710 | None:intergenic | 30.0% | |
| CAGATAAAAGAACCAAAAGA+GGG | + | chr4.4:17143525-17143544 | None:intergenic | 30.0% | |
| CTACTTCTTATTGATGTGTA+CGG | - | chr4.4:17141543-17141562 | MS.gene050116:intron | 30.0% | |
| GAAAGGTAGAGACAAAATTT+AGG | + | chr4.4:17139898-17139917 | None:intergenic | 30.0% | |
| GAAGTAAAAAGACCAAACAA+AGG | + | chr4.4:17143126-17143145 | None:intergenic | 30.0% | |
| GAATAAATGAACACCTTGTT+GGG | + | chr4.4:17140740-17140759 | None:intergenic | 30.0% | |
| GATAAAAACGCAATAATTGC+AGG | + | chr4.4:17138449-17138468 | None:intergenic | 30.0% | |
| GCTAATTTATACAGCTACAA+CGG | + | chr4.4:17139826-17139845 | None:intergenic | 30.0% | |
| GTAAAGTTAATACTAGAAGG+TGG | + | chr4.4:17140422-17140441 | None:intergenic | 30.0% | |
| GTTTCTCTATCTTACATTAC+TGG | - | chr4.4:17142592-17142611 | MS.gene050116:intron | 30.0% | |
| TAAAAACGCAATAATTGCAG+GGG | + | chr4.4:17138447-17138466 | None:intergenic | 30.0% | |
| TATTGTAGACGGATAAATCA+GGG | + | chr4.4:17142567-17142586 | None:intergenic | 30.0% | |
| TCTATCATTAATTAGGCTTC+AGG | - | chr4.4:17142708-17142727 | MS.gene050116:intron | 30.0% | |
| TCTATCTTACATTACTGGAT+TGG | - | chr4.4:17142597-17142616 | MS.gene050116:intron | 30.0% | |
| TCTTTACCACCAATTATCAA+TGG | - | chr4.4:17142264-17142283 | MS.gene050116:intron | 30.0% | |
| TGATGATAATTAGTTGGAGT+TGG | + | chr4.4:17138257-17138276 | None:intergenic | 30.0% | |
| TGATTTATCCGTCTACAATA+TGG | - | chr4.4:17142567-17142586 | MS.gene050116:intron | 30.0% | |
| TGGATGTTACAAAAAGACAT+TGG | - | chr4.4:17141107-17141126 | MS.gene050116:intron | 30.0% | |
| TGTACTATTATTGTTGCGTA+CGG | - | chr4.4:17141024-17141043 | MS.gene050116:intron | 30.0% | |
| TTAGCAGAATTCATACGTTT+GGG | - | chr4.4:17139846-17139865 | MS.gene050116:intron | 30.0% | |
| TTATGGGTTCAATGCTATTA+AGG | - | chr4.4:17143562-17143581 | MS.gene050116:intron | 30.0% | |
| TTCCCCACTTATTCATTTAA+GGG | + | chr4.4:17139000-17139019 | None:intergenic | 30.0% | |
| ! | ACAACAGTTGTAATTTTCTG+TGG | - | chr4.4:17139778-17139797 | MS.gene050116:intron | 30.0% |
| ! | ACCTTAAGTTCTATTTTGCT+AGG | - | chr4.4:17143181-17143200 | MS.gene050116:intron | 30.0% |
| ! | ACTTGGTAACCTGAAAAAAT+TGG | + | chr4.4:17143307-17143326 | None:intergenic | 30.0% |
| ! | ATTTTATTAGAGAGAGAGAG+AGG | + | chr4.4:17141801-17141820 | None:intergenic | 30.0% |
| ! | CCCGTATTTGAATTCTTTTA+AGG | - | chr4.4:17140281-17140300 | MS.gene050116:intron | 30.0% |
| ! | CTTGGTAACCTGAAAAAATT+GGG | + | chr4.4:17143306-17143325 | None:intergenic | 30.0% |
| !! | GTTTGGTCTTTTTACTTCTA+TGG | - | chr4.4:17143128-17143147 | MS.gene050116:intron | 30.0% |
| !!! | AAATCTTTTAGCTCTCATTC+TGG | - | chr4.4:17140951-17140970 | MS.gene050116:intron | 30.0% |
| !!! | AAGCTTTTTGAGTACATTAG+CGG | - | chr4.4:17138874-17138893 | MS.gene050116:intron | 30.0% |
| !!! | TATTTTGATGAAGCTTGTCT+TGG | + | chr4.4:17139588-17139607 | None:intergenic | 30.0% |
| !!! | TCATGTTTTTTTCTTTTGCC+AGG | - | chr4.4:17140391-17140410 | MS.gene050116:intron | 30.0% |
| !!! | TTTCGTTTGTTTTAGTTGGT+GGG | - | chr4.4:17141743-17141762 | MS.gene050116:intron | 30.0% |
| AAATCAACCTCGTAGGTAAA+AGG | + | chr4.4:17140244-17140263 | None:intergenic | 35.0% | |
| AACCAAATCCTTACAATTGC+AGG | - | chr4.4:17138656-17138675 | MS.gene050116:intron | 35.0% | |
| AATATAACTAGTGGAAGACG+AGG | + | chr4.4:17141772-17141791 | None:intergenic | 35.0% | |
| ACCAAATCCTTACAATTGCA+GGG | - | chr4.4:17138657-17138676 | MS.gene050116:intron | 35.0% | |
| ACCCCTTAAATGAATAAGTG+GGG | - | chr4.4:17138995-17139014 | MS.gene050116:intron | 35.0% | |
| AGATCTGTACATAATACAGG+GGG | - | chr4.4:17143090-17143109 | MS.gene050116:intron | 35.0% | |
| AGCAAAATGTCATGCTGAAT+TGG | - | chr4.4:17139244-17139263 | MS.gene050116:intron | 35.0% | |
| AGGTTACCAAGTTCTTAAAC+CGG | - | chr4.4:17143315-17143334 | MS.gene050116:CDS | 35.0% | |
| AGTCCGAGAAATAAATTAGC+AGG | + | chr4.4:17143026-17143045 | None:intergenic | 35.0% | |
| ATTCATCTTGTGCTGAGAAA+TGG | + | chr4.4:17138167-17138186 | None:intergenic | 35.0% | |
| CAAAACTATGCACAAAGACA+TGG | + | chr4.4:17141521-17141540 | None:intergenic | 35.0% | |
| CAATTCCAAAACTGAAGCAT+AGG | + | chr4.4:17138197-17138216 | None:intergenic | 35.0% | |
| CACCCCTTAAATGAATAAGT+GGG | - | chr4.4:17138994-17139013 | MS.gene050116:intron | 35.0% | |
| CATCAAATTCTCTGCTTTCA+TGG | + | chr4.4:17141635-17141654 | None:intergenic | 35.0% | |
| CCCAAACAAAAAAACTTGTG+CGG | - | chr4.4:17138627-17138646 | MS.gene050116:intron | 35.0% | |
| CTATTATCTAACATGGCCTA+GGG | - | chr4.4:17141472-17141491 | MS.gene050116:CDS | 35.0% | |
| CTTAGCAGAATTCATACGTT+TGG | - | chr4.4:17139845-17139864 | MS.gene050116:intron | 35.0% | |
| GCAGATAAAAGAACCAAAAG+AGG | + | chr4.4:17143526-17143545 | None:intergenic | 35.0% | |
| GCAGCATGAAACAAATAAAG+TGG | + | chr4.4:17139636-17139655 | None:intergenic | 35.0% | |
| GCCTAGCAAAATAGAACTTA+AGG | + | chr4.4:17143185-17143204 | None:intergenic | 35.0% | |
| GGCGTAAAGTTAATACTAGA+AGG | + | chr4.4:17140425-17140444 | None:intergenic | 35.0% | |
| GTTCCCCACTTATTCATTTA+AGG | + | chr4.4:17139001-17139020 | None:intergenic | 35.0% | |
| GTTGTATGTGCTGTATTAAG+AGG | - | chr4.4:17139520-17139539 | MS.gene050116:intron | 35.0% | |
| TAAAATCTGGAAAGAACAGC+AGG | + | chr4.4:17142980-17142999 | None:intergenic | 35.0% | |
| TAGAGACAAAATTTAGGCGA+TGG | + | chr4.4:17139892-17139911 | None:intergenic | 35.0% | |
| TAGTACAAGTCTTTCCTAAG+TGG | - | chr4.4:17139445-17139464 | MS.gene050116:intron | 35.0% | |
| TATTATTGTTGCGTACGGAT+GGG | - | chr4.4:17141029-17141048 | MS.gene050116:intron | 35.0% | |
| TCACCCCTTAAATGAATAAG+TGG | - | chr4.4:17138993-17139012 | MS.gene050116:intron | 35.0% | |
| TCCCCACTTATTCATTTAAG+GGG | + | chr4.4:17138999-17139018 | None:intergenic | 35.0% | |
| TCTATTATCTAACATGGCCT+AGG | - | chr4.4:17141471-17141490 | MS.gene050116:CDS | 35.0% | |
| TCTTATTGATGTGTACGGTA+GGG | - | chr4.4:17141548-17141567 | MS.gene050116:intron | 35.0% | |
| TCTTCATCCATGTGATGTTA+TGG | - | chr4.4:17143421-17143440 | MS.gene050116:intron | 35.0% | |
| TGAAGAACATCACTTCTAGT+AGG | + | chr4.4:17143407-17143426 | None:intergenic | 35.0% | |
| TGATTGAAAGGAGAAATGGA+AGG | + | chr4.4:17138120-17138139 | None:intergenic | 35.0% | |
| TTAACCAGACCAAAATTCAG+TGG | + | chr4.4:17142070-17142089 | None:intergenic | 35.0% | |
| TTCTTATTGATGTGTACGGT+AGG | - | chr4.4:17141547-17141566 | MS.gene050116:intron | 35.0% | |
| TTGAAAGAAATCAACCTCGT+AGG | + | chr4.4:17140251-17140270 | None:intergenic | 35.0% | |
| ! | ATTTTCACAATATTCCGCGA+AGG | + | chr4.4:17142488-17142507 | None:intergenic | 35.0% |
| ! | GATGCTTTTCCACTGAATTT+TGG | - | chr4.4:17142058-17142077 | MS.gene050116:intron | 35.0% |
| ! | GATTTTTCTTCCTCTGTTCT+TGG | - | chr4.4:17140571-17140590 | MS.gene050116:intron | 35.0% |
| ! | GGTTGATTTCTTTCAAACTC+AGG | - | chr4.4:17140255-17140274 | MS.gene050116:intron | 35.0% |
| ! | TAGAGCTTGCTTTCTATTGT+TGG | - | chr4.4:17139076-17139095 | MS.gene050116:CDS | 35.0% |
| ! | TCAAACTCACAAGGCTATTT+TGG | + | chr4.4:17139952-17139971 | None:intergenic | 35.0% |
| ! | TTTTAGTCCCTGCAATTGTA+AGG | + | chr4.4:17138667-17138686 | None:intergenic | 35.0% |
| !! | ACATCACTGATTTGAGAAAC+AGG | + | chr4.4:17139665-17139684 | None:intergenic | 35.0% |
| !! | TAACTTTACGCCTCTAAAAC+AGG | - | chr4.4:17140433-17140452 | MS.gene050116:intron | 35.0% |
| !! | TAGGGTACCTTCTTTTCTTT+GGG | - | chr4.4:17141490-17141509 | MS.gene050116:intron | 35.0% |
| !! | TCTTACATTACTGGATTGGT+CGG | - | chr4.4:17142601-17142620 | MS.gene050116:intron | 35.0% |
| !! | TTTTCCACTGAATTTTGGTC+TGG | - | chr4.4:17142063-17142082 | MS.gene050116:intron | 35.0% |
| !!! | CCGCACAAGTTTTTTTGTTT+GGG | + | chr4.4:17138630-17138649 | None:intergenic | 35.0% |
| !!! | CTTTTGGTTCTTTTATCTGC+AGG | - | chr4.4:17143526-17143545 | MS.gene050116:intron | 35.0% |
| !!! | GTTTCGTTTGTTTTAGTTGG+TGG | - | chr4.4:17141742-17141761 | MS.gene050116:intron | 35.0% |
| !!! | TCCGCACAAGTTTTTTTGTT+TGG | + | chr4.4:17138631-17138650 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAATTTGCAGGGA+CGG | + | chr4.4:17138508-17138527 | None:intergenic | 35.0% |
| !!! | TTCGTTTGTTTTAGTTGGTG+GGG | - | chr4.4:17141744-17141763 | MS.gene050116:intron | 35.0% |
| AACAAATTGGCCCAATTCTC+AGG | + | chr4.4:17141725-17141744 | None:intergenic | 40.0% | |
| AACATGCAACCAATGGCAAT+AGG | + | chr4.4:17141387-17141406 | None:intergenic | 40.0% | |
| ACAAAACTCAGCTCAGAGTA+CGG | + | chr4.4:17140056-17140075 | None:intergenic | 40.0% | |
| AGAACAAGAAGAAGCTGATG+AGG | - | chr4.4:17138358-17138377 | MS.gene050116:intron | 40.0% | |
| AGAACATCACTTCTAGTAGG+AGG | + | chr4.4:17143404-17143423 | None:intergenic | 40.0% | |
| AGAGAATGAGACAGAGAGAA+AGG | + | chr4.4:17139915-17139934 | None:intergenic | 40.0% | |
| AGCAATGACAATGTGTGATG+AGG | + | chr4.4:17139186-17139205 | None:intergenic | 40.0% | |
| AGGGATACTACAGAATGTAG+GGG | + | chr4.4:17139029-17139048 | None:intergenic | 40.0% | |
| AGTACCTCCATAACATCACA+TGG | + | chr4.4:17143431-17143450 | None:intergenic | 40.0% | |
| AGTATTCAGACGCATCTCAA+AGG | + | chr4.4:17140786-17140805 | None:intergenic | 40.0% | |
| ATGTACAGCATATCTACCTC+TGG | + | chr4.4:17139412-17139431 | None:intergenic | 40.0% | |
| ATTGTGCAACCTATGACTTC+AGG | + | chr4.4:17138544-17138563 | None:intergenic | 40.0% | |
| CACTCATGATCTGGATAAAC+TGG | - | chr4.4:17140213-17140232 | MS.gene050116:intron | 40.0% | |
| CAGGGATACTACAGAATGTA+GGG | + | chr4.4:17139030-17139049 | None:intergenic | 40.0% | |
| CATGATCTGGATAAACTGGA+GGG | - | chr4.4:17140217-17140236 | MS.gene050116:intron | 40.0% | |
| CTATTATTGTTGCGTACGGA+TGG | - | chr4.4:17141028-17141047 | MS.gene050116:intron | 40.0% | |
| CTTATTGATGTGTACGGTAG+GGG | - | chr4.4:17141549-17141568 | MS.gene050116:intron | 40.0% | |
| GAGCGATCTTATCAGAAAAG+AGG | - | chr4.4:17143658-17143677 | MS.gene050116:CDS | 40.0% | |
| GCTTGCTTTCTATTGTTGGA+AGG | - | chr4.4:17139080-17139099 | MS.gene050116:CDS | 40.0% | |
| GGACTACGTATTCCTTTGTT+TGG | - | chr4.4:17143111-17143130 | MS.gene050116:intron | 40.0% | |
| GTCGAAGTGATTTCTTCTGA+TGG | - | chr4.4:17142526-17142545 | MS.gene050116:intron | 40.0% | |
| TAAATGAACACCTTGTTGGG+TGG | + | chr4.4:17140737-17140756 | None:intergenic | 40.0% | |
| TCAGAAGAAATCACTTCGAC+AGG | + | chr4.4:17142526-17142545 | None:intergenic | 40.0% | |
| TCATCCATGTGATGTTATGG+AGG | - | chr4.4:17143424-17143443 | MS.gene050116:intron | 40.0% | |
| TCATGATCTGGATAAACTGG+AGG | - | chr4.4:17140216-17140235 | MS.gene050116:intron | 40.0% | |
| TCCCTGCAATTGTAAGGATT+TGG | + | chr4.4:17138661-17138680 | None:intergenic | 40.0% | |
| TGACAGCATTCAAACTCACA+AGG | + | chr4.4:17139961-17139980 | None:intergenic | 40.0% | |
| TGCAGGGGACTATAATGATA+GGG | + | chr4.4:17138432-17138451 | None:intergenic | 40.0% | |
| TGCTTGGCATTAGAAGATAG+CGG | - | chr4.4:17141426-17141445 | MS.gene050116:intron | 40.0% | |
| TTATTGATGTGTACGGTAGG+GGG | - | chr4.4:17141550-17141569 | MS.gene050116:intron | 40.0% | |
| TTGCAGGGGACTATAATGAT+AGG | + | chr4.4:17138433-17138452 | None:intergenic | 40.0% | |
| TTGCATCCGGTTTAAGAACT+TGG | + | chr4.4:17143324-17143343 | None:intergenic | 40.0% | |
| TTGTGCAACCTATGACTTCA+GGG | + | chr4.4:17138543-17138562 | None:intergenic | 40.0% | |
| ! | ATGTGATGTTATGGAGGTAC+TGG | - | chr4.4:17143430-17143449 | MS.gene050116:intron | 40.0% |
| ! | GAAGACCTATGCTTCAGTTT+TGG | - | chr4.4:17138189-17138208 | MS.gene050116:intron | 40.0% |
| ! | GAATGCGCACCATTGATAAT+TGG | + | chr4.4:17142276-17142295 | None:intergenic | 40.0% |
| !! | CAAAGAAAAGAAGGTACCCT+AGG | + | chr4.4:17141491-17141510 | None:intergenic | 40.0% |
| !! | CTAGGGTACCTTCTTTTCTT+TGG | - | chr4.4:17141489-17141508 | MS.gene050116:intron | 40.0% |
| !! | TTTTTAGCCCCTGAAGTCAT+AGG | - | chr4.4:17138532-17138551 | MS.gene050116:intron | 40.0% |
| AATGAATAAGTGGGGAACCC+CGG | - | chr4.4:17139003-17139022 | MS.gene050116:intron | 45.0% | |
| ACAGTCAGTGCCTGAGAATT+GGG | - | chr4.4:17141712-17141731 | MS.gene050116:intron | 45.0% | |
| AGGATGTTGCCATCGCTTAT+GGG | - | chr4.4:17143546-17143565 | MS.gene050116:intron | 45.0% | |
| AGTATCGTTAGAGGCAGAAG+AGG | - | chr4.4:17142624-17142643 | MS.gene050116:intron | 45.0% | |
| ATACTACAGAATGTAGGGGC+CGG | + | chr4.4:17139025-17139044 | None:intergenic | 45.0% | |
| ATCCAGATCATGAGTGCCAA+TGG | + | chr4.4:17140209-17140228 | None:intergenic | 45.0% | |
| CACAATATAATCACGCCACG+TGG | - | chr4.4:17138558-17138577 | MS.gene050116:intron | 45.0% | |
| CACTGCTACTGATCTGACAA+AGG | - | chr4.4:17142335-17142354 | MS.gene050116:CDS | 45.0% | |
| CTCATAAGCTTACTCGTGCT+AGG | + | chr4.4:17140704-17140723 | None:intergenic | 45.0% | |
| GCAGGGATACTACAGAATGT+AGG | + | chr4.4:17139031-17139050 | None:intergenic | 45.0% | |
| GCAGGGGACTATAATGATAG+GGG | + | chr4.4:17138431-17138450 | None:intergenic | 45.0% | |
| GCTTAGCATGCAATTGCATC+CGG | + | chr4.4:17143337-17143356 | None:intergenic | 45.0% | |
| GGGACTATAATGATAGGGGT+GGG | + | chr4.4:17138427-17138446 | None:intergenic | 45.0% | |
| GGTTCCTCCCAAAGAAAAGA+AGG | + | chr4.4:17141500-17141519 | None:intergenic | 45.0% | |
| TACTAGAAGGTGGTAAAGCC+TGG | + | chr4.4:17140412-17140431 | None:intergenic | 45.0% | |
| TATGACCTACTCTGCCTTGA+AGG | - | chr4.4:17139286-17139305 | MS.gene050116:intron | 45.0% | |
| TATTGATGTGTACGGTAGGG+GGG | - | chr4.4:17141551-17141570 | MS.gene050116:intron | 45.0% | |
| TCATTCTAGTCCACCCAACA+AGG | - | chr4.4:17140724-17140743 | MS.gene050116:intron | 45.0% | |
| TGCTGTTCTTCGCAAAATCG+CGG | + | chr4.4:17138032-17138051 | None:intergenic | 45.0% | |
| TGTGCAACCTATGACTTCAG+GGG | + | chr4.4:17138542-17138561 | None:intergenic | 45.0% | |
| TTCTTAGGTAACAGCCTTCG+CGG | - | chr4.4:17142471-17142490 | MS.gene050116:intron | 45.0% | |
| TTCTTCCTCTGTTCTTGGCA+TGG | - | chr4.4:17140576-17140595 | MS.gene050116:intron | 45.0% | |
| ! | AGCATTGAACCCATAAGCGA+TGG | + | chr4.4:17143558-17143577 | None:intergenic | 45.0% |
| ! | GCATTAGAAGATAGCGGCAT+TGG | - | chr4.4:17141432-17141451 | MS.gene050116:CDS | 45.0% |
| ! | GGTACCTTCTTTTCTTTGGG+AGG | - | chr4.4:17141493-17141512 | MS.gene050116:intron | 45.0% |
| ! | GTGTGATGAGGTGCTTCAAA+TGG | + | chr4.4:17139174-17139193 | None:intergenic | 45.0% |
| ! | TCAGAGCATCCTATTGCCAT+TGG | - | chr4.4:17141375-17141394 | MS.gene050116:intron | 45.0% |
| ! | TGCGCACCATTGATAATTGG+TGG | + | chr4.4:17142273-17142292 | None:intergenic | 45.0% |
| ! | TTAGAAGATAGCGGCATTGG+TGG | - | chr4.4:17141435-17141454 | MS.gene050116:CDS | 45.0% |
| !! | ATTGGTCGGAGTATCGTTAG+AGG | - | chr4.4:17142615-17142634 | MS.gene050116:intron | 45.0% |
| !! | AAGTATAATTATAAAATTTA+TGG | - | chr4.4:17141194-17141213 | MS.gene050116:intron | 5.0% |
| AATCACGCCACGTGGACATT+AGG | - | chr4.4:17138566-17138585 | MS.gene050116:intron | 50.0% | |
| AGCATGCCTACCGTGAGTTT+AGG | - | chr4.4:17138048-17138067 | MS.gene050116:CDS | 50.0% | |
| ATCACGCCACGTGGACATTA+GGG | - | chr4.4:17138567-17138586 | MS.gene050116:intron | 50.0% | |
| ATGGCAGGAAAGGAGCTTCA+GGG | - | chr4.4:17140595-17140614 | MS.gene050116:intron | 50.0% | |
| CACAGTCAGTGCCTGAGAAT+TGG | - | chr4.4:17141711-17141730 | MS.gene050116:intron | 50.0% | |
| CAGGATGTTGCCATCGCTTA+TGG | - | chr4.4:17143545-17143564 | MS.gene050116:intron | 50.0% | |
| CCAATCCTTCAAGGCAGAGT+AGG | + | chr4.4:17139294-17139313 | None:intergenic | 50.0% | |
| CCTACTCTGCCTTGAAGGAT+TGG | - | chr4.4:17139291-17139310 | MS.gene050116:intron | 50.0% | |
| CCTGGAACCCACAGAAAACT+CGG | + | chr4.4:17139327-17139346 | None:intergenic | 50.0% | |
| CGAAGAACTCTTGTCGCCAT+TGG | - | chr4.4:17140190-17140209 | MS.gene050116:intron | 50.0% | |
| CTGCAGAGGAAGTAGTGTCA+AGG | + | chr4.4:17143633-17143652 | None:intergenic | 50.0% | |
| CTTGACACTACTTCCTCTGC+AGG | - | chr4.4:17143631-17143650 | MS.gene050116:CDS | 50.0% | |
| GAACCCACAGAAAACTCGGA+GGG | + | chr4.4:17139323-17139342 | None:intergenic | 50.0% | |
| GATCGACTGTTTGCAGCTCT+AGG | - | chr4.4:17138075-17138094 | MS.gene050116:CDS | 50.0% | |
| GCATGCCTACCGTGAGTTTA+GGG | - | chr4.4:17138049-17138068 | MS.gene050116:CDS | 50.0% | |
| GGGGACTATAATGATAGGGG+TGG | + | chr4.4:17138428-17138447 | None:intergenic | 50.0% | |
| TACTACAGAATGTAGGGGCC+GGG | + | chr4.4:17139024-17139043 | None:intergenic | 50.0% | |
| TGAGCATAGCTCAGTTGGCA+GGG | + | chr4.4:17139048-17139067 | None:intergenic | 50.0% | |
| TGCCAACTGAGCTATGCTCA+CGG | - | chr4.4:17139048-17139067 | MS.gene050116:CDS | 50.0% | |
| TGTTCTTGGCATGGCAGGAA+AGG | - | chr4.4:17140585-17140604 | MS.gene050116:intron | 50.0% | |
| TTTGGTCCCTAATGTCCACG+TGG | + | chr4.4:17138576-17138595 | None:intergenic | 50.0% | |
| ! | AAGCCCTCCGAGTTTTCTGT+GGG | - | chr4.4:17139317-17139336 | MS.gene050116:CDS | 50.0% |
| ACTACAGAATGTAGGGGCCG+GGG | + | chr4.4:17139023-17139042 | None:intergenic | 55.0% | |
| AGGGGTGGGTACCTATTAGC+AGG | + | chr4.4:17138413-17138432 | None:intergenic | 55.0% | |
| CATGGCAGGAAAGGAGCTTC+AGG | - | chr4.4:17140594-17140613 | MS.gene050116:intron | 55.0% | |
| CGCCATTGGCACTCATGATC+TGG | - | chr4.4:17140204-17140223 | MS.gene050116:intron | 55.0% | |
| CTTCAGGGCTGATGAGCTCA+TGG | - | chr4.4:17140610-17140629 | MS.gene050116:intron | 55.0% | |
| GCCAACTGAGCTATGCTCAC+GGG | - | chr4.4:17139049-17139068 | MS.gene050116:CDS | 55.0% | |
| GGAACCCACAGAAAACTCGG+AGG | + | chr4.4:17139324-17139343 | None:intergenic | 55.0% | |
| GGGCTTGAGCCAATCCTTCA+AGG | + | chr4.4:17139303-17139322 | None:intergenic | 55.0% | |
| GTGAGCATAGCTCAGTTGGC+AGG | + | chr4.4:17139049-17139068 | None:intergenic | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr4.4:17139053-17139072 | None:intergenic | 55.0% | |
| TCCTCTGTTCTTGGCATGGC+AGG | - | chr4.4:17140580-17140599 | MS.gene050116:intron | 55.0% | |
| TCCTGCCATGCCAAGAACAG+AGG | + | chr4.4:17140584-17140603 | None:intergenic | 55.0% | |
| TCGATCCCGCCCTAAACTCA+CGG | + | chr4.4:17138061-17138080 | None:intergenic | 55.0% | |
| TGCCTACCGTGAGTTTAGGG+CGG | - | chr4.4:17138052-17138071 | MS.gene050116:CDS | 55.0% | |
| TGCGTACGGATGGGAATGCA+TGG | - | chr4.4:17141038-17141057 | MS.gene050116:intron | 55.0% | |
| ! | CAAGCCCTCCGAGTTTTCTG+TGG | - | chr4.4:17139316-17139335 | MS.gene050116:CDS | 55.0% |
| ! | CCGAGTTTTCTGTGGGTTCC+AGG | - | chr4.4:17139324-17139343 | MS.gene050116:CDS | 55.0% |
| ! | GGAGGGTCCTTTTACCTACG+AGG | - | chr4.4:17140234-17140253 | MS.gene050116:intron | 55.0% |
| !! | CAGACAAGGCACCCCTCTTT+TGG | - | chr4.4:17143510-17143529 | MS.gene050116:intron | 55.0% |
| AGATCGCTCAGCTCCTGCAG+AGG | + | chr4.4:17143647-17143666 | None:intergenic | 60.0% | |
| TCCCGCCCTAAACTCACGGT+AGG | + | chr4.4:17138057-17138076 | None:intergenic | 60.0% | |
| ! | GCCTACCGTGAGTTTAGGGC+GGG | - | chr4.4:17138053-17138072 | MS.gene050116:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17138000 | 17143685 | 17138000 | ID=MS.gene050116 |
| chr4.4 | mRNA | 17138000 | 17143685 | 17138000 | ID=MS.gene050116.t1;Parent=MS.gene050116 |
| chr4.4 | exon | 17143577 | 17143685 | 17143577 | ID=MS.gene050116.t1.exon1;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17143577 | 17143685 | 17143577 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17143451 | 17143510 | 17143451 | ID=MS.gene050116.t1.exon2;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17143451 | 17143510 | 17143451 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17143265 | 17143364 | 17143265 | ID=MS.gene050116.t1.exon3;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17143265 | 17143364 | 17143265 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17142271 | 17142400 | 17142271 | ID=MS.gene050116.t1.exon4;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17142271 | 17142400 | 17142271 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17142071 | 17142186 | 17142071 | ID=MS.gene050116.t1.exon5;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17142071 | 17142186 | 17142071 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17141430 | 17141496 | 17141430 | ID=MS.gene050116.t1.exon6;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17141430 | 17141496 | 17141430 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17141231 | 17141272 | 17141231 | ID=MS.gene050116.t1.exon7;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17141231 | 17141272 | 17141231 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17141042 | 17141083 | 17141042 | ID=MS.gene050116.t1.exon8;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17141042 | 17141083 | 17141042 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17140782 | 17140858 | 17140782 | ID=MS.gene050116.t1.exon9;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17140782 | 17140858 | 17140782 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17139305 | 17139431 | 17139305 | ID=MS.gene050116.t1.exon10;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17139305 | 17139431 | 17139305 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17139040 | 17139207 | 17139040 | ID=MS.gene050116.t1.exon11;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17139040 | 17139207 | 17139040 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17138240 | 17138368 | 17138240 | ID=MS.gene050116.t1.exon12;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17138240 | 17138368 | 17138240 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| chr4.4 | exon | 17138000 | 17138137 | 17138000 | ID=MS.gene050116.t1.exon13;Parent=MS.gene050116.t1 |
| chr4.4 | CDS | 17138000 | 17138137 | 17138000 | ID=cds.MS.gene050116.t1;Parent=MS.gene050116.t1 |
| Gene Sequence |
| Protein sequence |
